Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610400 | XP_003607813.1 | 96.690 | 423 | 11 | 2 | 1 | 420 | 1 | 423 | 0.0 | 829 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610400 | sp|Q8JFW1|ASND1_DANRE | 31.308 | 428 | 204 | 15 | 53 | 420 | 7 | 404 | 2.09e-37 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029240 | Msa0610400 | 0.816134 | 6.466345e-52 | -8.615850e-47 |
| Msa0054480 | Msa0610400 | 0.814743 | 1.318976e-51 | -8.615850e-47 |
| Msa0061080 | Msa0610400 | 0.811929 | 5.474299e-51 | -8.615850e-47 |
| Msa0101700 | Msa0610400 | 0.812402 | 4.317141e-51 | -8.615850e-47 |
| Msa0105620 | Msa0610400 | 0.805803 | 1.118940e-49 | -8.615850e-47 |
| Msa0610400 | Msa0610430 | 0.846338 | 2.313423e-59 | -8.615850e-47 |
| Msa0610400 | Msa0625720 | 0.807280 | 5.460153e-50 | -8.615850e-47 |
| Msa0610400 | Msa0650930 | 0.879055 | 1.702205e-69 | -8.615850e-47 |
| Msa0610400 | Msa0663390 | 0.802928 | 4.444369e-49 | -8.615850e-47 |
| Msa0610400 | Msa0673460 | 0.803903 | 2.791992e-49 | -8.615850e-47 |
| Msa0610400 | Msa0683170 | 0.808108 | 3.641418e-50 | -8.615850e-47 |
| Msa0610400 | Msa0692830 | 0.924391 | 7.496856e-90 | -8.615850e-47 |
| Msa0610400 | Msa0692950 | 0.938981 | 2.732066e-99 | -8.615850e-47 |
| Msa0610400 | Msa0711780 | 0.817042 | 4.048021e-52 | -8.615850e-47 |
| Msa0610400 | Msa0715700 | 0.818590 | 1.810396e-52 | -8.615850e-47 |
| Msa0610400 | Msa0794670 | 0.811921 | 5.496332e-51 | -8.615850e-47 |
| Msa0610400 | Msa0808080 | 0.800317 | 1.525133e-48 | -8.615850e-47 |
| Msa0610400 | Msa0849030 | 0.810838 | 9.444958e-51 | -8.615850e-47 |
| Msa0610400 | Msa0876810 | 0.805290 | 1.433480e-49 | -8.615850e-47 |
| Msa0610400 | Msa0933100 | 0.800581 | 1.347498e-48 | -8.615850e-47 |
| Msa0610400 | Msa0987370 | 0.811527 | 6.696301e-51 | -8.615850e-47 |
| Msa0610400 | Msa1009820 | 0.801650 | 8.146571e-49 | -8.615850e-47 |
| Msa0610400 | Msa1051200 | 0.822646 | 2.119770e-53 | -8.615850e-47 |
| Msa0610400 | Msa1137700 | 0.817710 | 2.862755e-52 | -8.615850e-47 |
| Msa0610400 | Msa1160590 | 0.801338 | 9.437151e-49 | -8.615850e-47 |
| Msa0610400 | Msa1162270 | 0.811745 | 6.002234e-51 | -8.615850e-47 |
| Msa0610400 | Msa1174040 | 0.815217 | 1.034986e-51 | -8.615850e-47 |
| Msa0610400 | Msa1180500 | 0.810280 | 1.247072e-50 | -8.615850e-47 |
| Msa0610400 | Msa1181250 | 0.815192 | 1.048689e-51 | -8.615850e-47 |
| Msa0610400 | Msa1181330 | 0.803322 | 3.683448e-49 | -8.615850e-47 |
| Msa0610400 | Msa1208880 | 0.804887 | 1.740947e-49 | -8.615850e-47 |
| Msa0610400 | Msa1231840 | 0.800023 | 1.750391e-48 | -8.615850e-47 |
| Msa0610400 | Msa1245930 | 0.805149 | 1.534206e-49 | -8.615850e-47 |
| Msa0610400 | Msa1259060 | 0.801545 | 8.561725e-49 | -8.615850e-47 |
| Msa0610400 | Msa1277660 | 0.810740 | 9.919981e-51 | -8.615850e-47 |
| Msa0610400 | Msa1312520 | 0.813209 | 2.874467e-51 | -8.615850e-47 |
| Msa0610400 | Msa1331000 | 0.808803 | 2.587690e-50 | -8.615850e-47 |
| Msa0610400 | Msa1386780 | 0.809447 | 1.883852e-50 | -8.615850e-47 |
| Msa0610400 | Msa1400580 | 0.802082 | 6.641038e-49 | -8.615850e-47 |
| Msa0610400 | Msa1427230 | 0.807379 | 5.202984e-50 | -8.615850e-47 |
| Msa0610400 | Msa1454480 | 0.847316 | 1.248914e-59 | -8.615850e-47 |
| Msa0610400 | Msa1460830 | 0.813766 | 2.167185e-51 | -8.615850e-47 |
| Msa0127020 | Msa0610400 | 0.803340 | 3.653528e-49 | -8.615850e-47 |
| Msa0127800 | Msa0610400 | 0.803082 | 4.131378e-49 | -8.615850e-47 |
| Msa0145440 | Msa0610400 | 0.803001 | 4.293648e-49 | -8.615850e-47 |
| Msa0150820 | Msa0610400 | 0.814315 | 1.640151e-51 | -8.615850e-47 |
| Msa0160550 | Msa0610400 | 0.801863 | 7.366422e-49 | -8.615850e-47 |
| Msa0165210 | Msa0610400 | 0.802583 | 5.235791e-49 | -8.615850e-47 |
| Msa0166870 | Msa0610400 | 0.804997 | 1.651183e-49 | -8.615850e-47 |
| Msa0169280 | Msa0610400 | 0.806260 | 8.968785e-50 | -8.615850e-47 |
| Msa0388700 | Msa0610400 | 0.801429 | 9.041186e-49 | -8.615850e-47 |
| Msa0481530 | Msa0610400 | 0.808309 | 3.300316e-50 | -8.615850e-47 |
| Msa0253200 | Msa0610400 | 0.823519 | 1.325847e-53 | -8.615850e-47 |
| Msa0279220 | Msa0610400 | 0.820802 | 5.657733e-53 | -8.615850e-47 |
| Msa0279240 | Msa0610400 | 0.804196 | 2.425948e-49 | -8.615850e-47 |
| Msa0279700 | Msa0610400 | 0.811367 | 7.254091e-51 | -8.615850e-47 |
| Msa0292030 | Msa0610400 | 0.827205 | 1.779466e-54 | -8.615850e-47 |
| Msa0315290 | Msa0610400 | 0.800465 | 1.423065e-48 | -8.615850e-47 |
| Msa0318980 | Msa0610400 | 0.809423 | 1.906339e-50 | -8.615850e-47 |
| Msa0339620 | Msa0610400 | 0.814530 | 1.469763e-51 | -8.615850e-47 |
| Msa0363790 | Msa0610400 | 0.806107 | 9.659015e-50 | -8.615850e-47 |
| Msa0512750 | Msa0610400 | 0.820737 | 5.856141e-53 | -8.615850e-47 |
| Msa0522070 | Msa0610400 | 0.824361 | 8.415637e-54 | -8.615850e-47 |
| Msa0529890 | Msa0610400 | 0.808357 | 3.222602e-50 | -8.615850e-47 |
| Msa0585560 | Msa0610400 | 0.809934 | 1.480658e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610400 | MtrunA17_Chr4g0043241 | 96.690 | 423 | 11 | 2 | 1 | 420 | 1 | 423 | 0.0 | 829 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610400 | AT2G03667.2 | 50.939 | 426 | 162 | 10 | 1 | 420 | 1 | 385 | 3.92e-115 | 349 |
| Msa0610400 | AT2G03667.1 | 50.939 | 426 | 162 | 10 | 1 | 420 | 1 | 385 | 5.83e-115 | 349 |
Find 86 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCGAATTCAAACGGATTTC+TGG | 0.151787 | 4_2:+58097228 | Msa0610400:CDS |
| TATGATACTTGCGGCATTAC+TGG | 0.227735 | 4_2:+58098743 | Msa0610400:CDS |
| TTCTCCGCAGAGCTTCTTTC+AGG | 0.244260 | 4_2:-58095455 | None:intergenic |
| GATGTTCTTTCTACAATTAA+AGG | 0.246010 | 4_2:+58096163 | Msa0610400:CDS |
| CGTTTCGTCGTGTTCTATAA+AGG | 0.266928 | 4_2:-58095541 | None:intergenic |
| CTACTTACTGTAAGCTTTGA+TGG | 0.268070 | 4_2:+58099502 | Msa0610400:CDS |
| GAATTGAACATCTTAGTTAC+TGG | 0.314500 | 4_2:+58097164 | Msa0610400:CDS |
| ATACCAGTGGCCTGCTGATC+TGG | 0.314738 | 4_2:-58096430 | None:intergenic |
| CGGTGCAACTTTGCAGCTTA+GGG | 0.326746 | 4_2:+58095611 | Msa0610400:CDS |
| TTCTTCACACCCAAGCTATC+AGG | 0.334928 | 4_2:-58095483 | None:intergenic |
| TCGGTGCAACTTTGCAGCTT+AGG | 0.341471 | 4_2:+58095610 | Msa0610400:CDS |
| ATTGCATAGGCTGTGATATC+TGG | 0.346833 | 4_2:+58098663 | Msa0610400:intron |
| TCCGCTTGTTCAGCCTTTAG+TGG | 0.349517 | 4_2:+58095641 | Msa0610400:CDS |
| CGAAACATTCTGGTGTATAA+TGG | 0.352754 | 4_2:+58095672 | Msa0610400:CDS |
| GGATGCTTCTCGAAACATTC+TGG | 0.367158 | 4_2:+58095662 | Msa0610400:CDS |
| GTTCTATAAAGGATGAGATT+TGG | 0.372374 | 4_2:-58095530 | None:intergenic |
| GCCTGCTGATCTGGAGCAAC+TGG | 0.375811 | 4_2:-58096421 | None:intergenic |
| TTGGGGAAGTTGAGTGGAAT+GGG | 0.390754 | 4_2:-58095184 | None:intergenic |
| GCAGAAAATGAAGCTCATAA+TGG | 0.407580 | 4_2:+58097142 | Msa0610400:intron |
| TCCTGTGGTTCTTATTTGAC+TGG | 0.408994 | 4_2:+58096106 | Msa0610400:CDS |
| GTCATTGTATACTATCTATC+AGG | 0.417008 | 4_2:+58097660 | Msa0610400:CDS |
| CTTGGGAATTGTTGCTCCTG+TGG | 0.427510 | 4_2:+58096091 | Msa0610400:CDS |
| AGGATAGTTCAAGGACCCTT+TGG | 0.431242 | 4_2:+58096311 | Msa0610400:intron |
| TTCTATTGCAGGATAGTTCA+AGG | 0.432555 | 4_2:+58096302 | Msa0610400:intron |
| GGAATTGCATTGACCGTCTC+AGG | 0.441436 | 4_2:+58095137 | Msa0610400:CDS |
| GGCGGAGCCTTCTTGTTCAC+TGG | 0.445360 | 4_2:+58096356 | Msa0610400:CDS |
| AGTTCAAGGACCCTTTGGTT+TGG | 0.446623 | 4_2:+58096316 | Msa0610400:CDS |
| GACCATGGGCTATCATCTAT+TGG | 0.452967 | 4_2:+58096185 | Msa0610400:CDS |
| AGTTTCTTATGCAGACTCTT+GGG | 0.458584 | 4_2:+58096074 | Msa0610400:CDS |
| TTTGGGGAAGTTGAGTGGAA+TGG | 0.465230 | 4_2:-58095185 | None:intergenic |
| AGTTGAGTGGAATGGGAGAG+AGG | 0.468545 | 4_2:-58095177 | None:intergenic |
| AGCACTCACAACTGGGATCC+AGG | 0.469254 | 4_2:-58098773 | None:intergenic |
| GAGAAGAGGTCCTGATAGCT+TGG | 0.474458 | 4_2:+58095473 | Msa0610400:CDS |
| TGGTTTGGCCGAGATGCATT+TGG | 0.474834 | 4_2:+58096331 | Msa0610400:CDS |
| GAGTTTCTTATGCAGACTCT+TGG | 0.484407 | 4_2:+58096073 | Msa0610400:CDS |
| GATAGAAAATCTGCCAAGGC+AGG | 0.484885 | 4_2:+58099538 | Msa0610400:CDS |
| TAGTTCTTTCAACCCTGCCT+TGG | 0.492382 | 4_2:-58099551 | None:intergenic |
| TTCTACAATTAAAGGACCAT+GGG | 0.492445 | 4_2:+58096171 | Msa0610400:CDS |
| TGGATTGCATACCGTCTTGA+CGG | 0.501054 | 4_2:-58099586 | None:intergenic |
| GCCAGTTGCTCCAGATCAGC+AGG | 0.501944 | 4_2:+58096420 | Msa0610400:CDS |
| ATATACAAACTCAACATTGA+AGG | 0.502927 | 4_2:+58097273 | Msa0610400:CDS |
| CCAGAGAAAAGAATTGCAAC+AGG | 0.504982 | 4_2:-58098708 | None:intergenic |
| GGCGATTTGGGGAAGTTGAG+TGG | 0.513848 | 4_2:-58095190 | None:intergenic |
| TTTCTACAATTAAAGGACCA+TGG | 0.517454 | 4_2:+58096170 | Msa0610400:CDS |
| ATGCATCTCGGCCAAACCAA+AGG | 0.517811 | 4_2:-58096327 | None:intergenic |
| GAGACAGTTCCATGCGAAGC+AGG | 0.526342 | 4_2:+58097403 | Msa0610400:CDS |
| AATTGAACATCTTAGTTACT+GGG | 0.534296 | 4_2:+58097165 | Msa0610400:CDS |
| AGAAGAGGTCCTGATAGCTT+GGG | 0.535911 | 4_2:+58095474 | Msa0610400:CDS |
| GCCGAGATGCATTTGGTAGG+CGG | 0.538103 | 4_2:+58096338 | Msa0610400:CDS |
| TTTCGAGAAGCATCCACTAA+AGG | 0.538876 | 4_2:-58095654 | None:intergenic |
| GTGGATGCTTCGAATTCAAA+CGG | 0.541109 | 4_2:+58097220 | Msa0610400:CDS |
| TGCATCTCGGCCAAACCAAA+GGG | 0.542020 | 4_2:-58096326 | None:intergenic |
| ATGGGCTATCATCTATTGGC+AGG | 0.544781 | 4_2:+58096189 | Msa0610400:CDS |
| GGCATTACTGGATCAATGCC+TGG | 0.546449 | 4_2:+58098755 | Msa0610400:CDS |
| AACGGAGAACTTCATTTCAT+CGG | 0.547006 | 4_2:+58095591 | Msa0610400:CDS |
| AACTGTGTTAAATGCGGGAA+AGG | 0.547646 | 4_2:+58096130 | Msa0610400:CDS |
| GCTCCAGATCAGCAGGCCAC+TGG | 0.553421 | 4_2:+58096427 | Msa0610400:CDS |
| ACTTAGGGCAGGATGTCTGC+AGG | 0.555484 | 4_2:-58097342 | None:intergenic |
| TAGTAATAACCTGCTTCGCA+TGG | 0.561332 | 4_2:-58097412 | None:intergenic |
| AAAGAAGCTCTGCGGAGAAG+AGG | 0.562727 | 4_2:+58095459 | Msa0610400:CDS |
| TTGGCCGAGATGCATTTGGT+AGG | 0.570304 | 4_2:+58096335 | Msa0610400:CDS |
| AATTCAAACGGATTTCTGGT+TGG | 0.573232 | 4_2:+58097232 | Msa0610400:CDS |
| TCCACTAAAGGCTGAACAAG+CGG | 0.574215 | 4_2:-58095642 | None:intergenic |
| AGCAACATATGAGCTCGCAT+TGG | 0.577951 | 4_2:-58097604 | None:intergenic |
| ACCAGTCAAATAAGAACCAC+AGG | 0.577955 | 4_2:-58096107 | None:intergenic |
| AAAGTTGAATCATCTTCTGT+AGG | 0.580809 | 4_2:-58096379 | None:intergenic |
| TCCGCCTACCAAATGCATCT+CGG | 0.585873 | 4_2:-58096339 | None:intergenic |
| GGTGCAACTTTGCAGCTTAG+GGG | 0.596413 | 4_2:+58095612 | Msa0610400:CDS |
| CTGGTAACTGTGTTAAATGC+GGG | 0.603339 | 4_2:+58096125 | Msa0610400:CDS |
| AAGAGTCTGCATAAGAAACT+CGG | 0.611073 | 4_2:-58096071 | None:intergenic |
| GAAGCAGAAACGAAGATGTG+TGG | 0.614701 | 4_2:+58095116 | None:intergenic |
| ATAGAAAATCTGCCAAGGCA+GGG | 0.618548 | 4_2:+58099539 | Msa0610400:CDS |
| CTGTAGGCCAGTGAACAAGA+AGG | 0.621892 | 4_2:-58096363 | None:intergenic |
| TCCTGATAGAAAATCTGCCA+AGG | 0.622329 | 4_2:+58099534 | Msa0610400:CDS |
| CATTGAAGGAACTTATCAAG+TGG | 0.622380 | 4_2:+58097287 | Msa0610400:CDS |
| ATTGAAGGAACTTATCAAGT+GGG | 0.628054 | 4_2:+58097288 | Msa0610400:CDS |
| GCTGGATTCTATGATACTTG+CGG | 0.628488 | 4_2:+58098734 | Msa0610400:CDS |
| GTTAATTCGAATGCCTGAGA+CGG | 0.629293 | 4_2:-58095150 | None:intergenic |
| AAAGAGTTGCACCGTCAAGA+CGG | 0.637047 | 4_2:+58099575 | Msa0610400:CDS |
| TGCCAATAGATGATAGCCCA+TGG | 0.642233 | 4_2:-58096187 | None:intergenic |
| TCTGCAAATGAAGACAGTAA+CGG | 0.682909 | 4_2:+58095573 | Msa0610400:CDS |
| ACTGGTAACTGTGTTAAATG+CGG | 0.692384 | 4_2:+58096124 | Msa0610400:CDS |
| TACTGGGAAGAGCTACCATG+TGG | 0.698665 | 4_2:+58097181 | Msa0610400:CDS |
| TGCATACTATATATTCCACA+TGG | 0.727847 | 4_2:-58097196 | None:intergenic |
| ATGACCTGAAAGAAGCTCTG+CGG | 0.729969 | 4_2:+58095451 | Msa0610400:CDS |
| TGGAATATATAGTATGCACG+TGG | 0.745413 | 4_2:+58097201 | Msa0610400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTCTAATAATTGAATT+TGG | + | chr4_2:58098488-58098507 | Msa0610400:intron | 10.0% |
| !!! | TAATTTTTTTTATGTTCTTC+AGG | + | chr4_2:58096004-58096023 | Msa0610400:intron | 15.0% |
| !!! | ATTTCTATTATATGTTTTGT+AGG | + | chr4_2:58098511-58098530 | Msa0610400:intron | 15.0% |
| !!! | TTTCTATTATATGTTTTGTA+GGG | + | chr4_2:58098512-58098531 | Msa0610400:intron | 15.0% |
| !!! | ATTAACTTACATTTTCAGAT+TGG | - | chr4_2:58095214-58095233 | None:intergenic | 20.0% |
| !! | TTAAGTAAAACGAAAAGTTA+TGG | - | chr4_2:58095380-58095399 | None:intergenic | 20.0% |
| !! | ATATCAACATTTCTACAATA+GGG | + | chr4_2:58095793-58095812 | Msa0610400:intron | 20.0% |
| !!! | CTTTTTTACTAAATGACAAT+AGG | - | chr4_2:58096541-58096560 | None:intergenic | 20.0% |
| !! | ATTTATCTCAAGAATTTCAT+TGG | + | chr4_2:58096714-58096733 | Msa0610400:intron | 20.0% |
| !! | TTGAAGATGATTACAAAATA+TGG | - | chr4_2:58096782-58096801 | None:intergenic | 20.0% |
| !! | AGAGATTGTCAAAAATTTAA+GGG | - | chr4_2:58097549-58097568 | None:intergenic | 20.0% |
| !!! | TATGTTGCTAAATGTTTTAA+AGG | + | chr4_2:58097618-58097637 | Msa0610400:CDS | 20.0% |
| !! | TCTTATTAACATCATACAAA+CGG | - | chr4_2:58097771-58097790 | None:intergenic | 20.0% |
| !!! | TAATAAGATGTTTTCAACTT+TGG | + | chr4_2:58097783-58097802 | Msa0610400:intron | 20.0% |
| !!! | AATAAGATGTTTTCAACTTT+GGG | + | chr4_2:58097784-58097803 | Msa0610400:intron | 20.0% |
| !! | TCTTGAAATTTCAAAAAACA+AGG | + | chr4_2:58098275-58098294 | Msa0610400:intron | 20.0% |
| !! | TTTAGTTACAATTTGCATAT+GGG | - | chr4_2:58098433-58098452 | None:intergenic | 20.0% |
| !! | ATTTAGTTACAATTTGCATA+TGG | - | chr4_2:58098434-58098453 | None:intergenic | 20.0% |
| !! | ATATACCATTTGTTCTTTAA+TGG | + | chr4_2:58098539-58098558 | Msa0610400:intron | 20.0% |
| !! | TATACCATTTGTTCTTTAAT+GGG | + | chr4_2:58098540-58098559 | Msa0610400:intron | 20.0% |
| !! | ATATAAAAGAAATCTACTGA+AGG | - | chr4_2:58098621-58098640 | None:intergenic | 20.0% |
| !! | AATTCAAACTGCAATTAATT+AGG | + | chr4_2:58098925-58098944 | Msa0610400:intron | 20.0% |
| !! | TTCTTCTAAATAAAGATTCA+AGG | - | chr4_2:58099217-58099236 | None:intergenic | 20.0% |
| !! | ATTCATATGATTTAATCCAA+TGG | - | chr4_2:58099338-58099357 | None:intergenic | 20.0% |
| !! | ATTGGATTAAATCATATGAA+TGG | + | chr4_2:58099337-58099356 | Msa0610400:intron | 20.0% |
| ! | AATGTAAGTTAATTGTACCT+CGG | + | chr4_2:58095221-58095240 | Msa0610400:intron | 25.0% |
| !! | TTCATTTTCTCAACTTATTG+TGG | + | chr4_2:58095293-58095312 | Msa0610400:intron | 25.0% |
| !! | TCATTTTCTCAACTTATTGT+GGG | + | chr4_2:58095294-58095313 | Msa0610400:intron | 25.0% |
| !! | TTTTTACTGTGTGATTGATT+TGG | + | chr4_2:58095407-58095426 | Msa0610400:intron | 25.0% |
| ! | GATATCAACATTTCTACAAT+AGG | + | chr4_2:58095792-58095811 | Msa0610400:intron | 25.0% |
| ! | TGAAACATAGTTATAAACTG+TGG | + | chr4_2:58095866-58095885 | Msa0610400:intron | 25.0% |
| ! | GATGTTCTTTCTACAATTAA+AGG | + | chr4_2:58096163-58096182 | Msa0610400:CDS | 25.0% |
| !!! | TACTTTCTTTTTTCTATTGC+AGG | + | chr4_2:58096291-58096310 | Msa0610400:intron | 25.0% |
| ! | TGGTATGTAATACATGAAAT+TGG | + | chr4_2:58096447-58096466 | Msa0610400:intron | 25.0% |
| ! | TGTAATACATGAAATTGGAA+TGG | + | chr4_2:58096452-58096471 | Msa0610400:intron | 25.0% |
| ! | ATAAATAGCGTCAATTAAAG+AGG | - | chr4_2:58096700-58096719 | None:intergenic | 25.0% |
| ! | CTGTATATAAATAAGAGGAA+GGG | - | chr4_2:58096999-58097018 | None:intergenic | 25.0% |
| ! | AATTGAACATCTTAGTTACT+GGG | + | chr4_2:58097165-58097184 | Msa0610400:CDS | 25.0% |
| ! | ATATACAAACTCAACATTGA+AGG | + | chr4_2:58097273-58097292 | Msa0610400:CDS | 25.0% |
| ! | GAACTGTGAATTAATACTAA+AGG | - | chr4_2:58097518-58097537 | None:intergenic | 25.0% |
| ! | CAGAGATTGTCAAAAATTTA+AGG | - | chr4_2:58097550-58097569 | None:intergenic | 25.0% |
| ! | CTTATTAACATCATACAAAC+GGG | - | chr4_2:58097770-58097789 | None:intergenic | 25.0% |
| !! | ATAAGATGTTTTCAACTTTG+GGG | + | chr4_2:58097785-58097804 | Msa0610400:intron | 25.0% |
| ! | ATCTCTAGTAACAAAACTTT+AGG | - | chr4_2:58098318-58098337 | None:intergenic | 25.0% |
| ! | TAATCCCATTAAAGAACAAA+TGG | - | chr4_2:58098547-58098566 | None:intergenic | 25.0% |
| ! | AATGTCGTTAAAGAATCTAA+AGG | - | chr4_2:58098570-58098589 | None:intergenic | 25.0% |
| ! | TTATATTTGTCATGACTCTT+TGG | + | chr4_2:58098635-58098654 | Msa0610400:intron | 25.0% |
| ! | AGAATAATCAAGATAGAAGA+AGG | - | chr4_2:58098817-58098836 | None:intergenic | 25.0% |
| ! | TATGATAGTTGCAGATTTAT+AGG | + | chr4_2:58098974-58098993 | Msa0610400:intron | 25.0% |
| ! | ATGATAGTTGCAGATTTATA+GGG | + | chr4_2:58098975-58098994 | Msa0610400:intron | 25.0% |
| ! | TTTAGAAGAATGAGATAAGA+AGG | + | chr4_2:58099227-58099246 | Msa0610400:intron | 25.0% |
| ! | TTCATCTGTCAATTAAAAAG+AGG | - | chr4_2:58099476-58099495 | None:intergenic | 25.0% |
| GTTCTATAAAGGATGAGATT+TGG | - | chr4_2:58095533-58095552 | None:intergenic | 30.0% | |
| CTTGATACTGCAATAAAATG+TGG | - | chr4_2:58095920-58095939 | None:intergenic | 30.0% | |
| ! | CACATTTTATTGCAGTATCA+AGG | + | chr4_2:58095918-58095937 | Msa0610400:intron | 30.0% |
| TTTCTACAATTAAAGGACCA+TGG | + | chr4_2:58096170-58096189 | Msa0610400:CDS | 30.0% | |
| TTCTACAATTAAAGGACCAT+GGG | + | chr4_2:58096171-58096190 | Msa0610400:CDS | 30.0% | |
| GTAATTATTCGCTTTCTTTG+TGG | + | chr4_2:58096250-58096269 | Msa0610400:intron | 30.0% | |
| AAAGTTGAATCATCTTCTGT+AGG | - | chr4_2:58096382-58096401 | None:intergenic | 30.0% | |
| TTTCATGTATTACATACCAG+TGG | - | chr4_2:58096446-58096465 | None:intergenic | 30.0% | |
| CTAATCAATGCAAAAGTTTG+AGG | - | chr4_2:58096740-58096759 | None:intergenic | 30.0% | |
| AATATGGAGCGAAAACTTAT+CGG | - | chr4_2:58096766-58096785 | None:intergenic | 30.0% | |
| TTGGTATCTTATCTTGCTTA+TGG | + | chr4_2:58096863-58096882 | Msa0610400:intron | 30.0% | |
| CTTATCTTGCTTATGGAATA+AGG | + | chr4_2:58096870-58096889 | Msa0610400:intron | 30.0% | |
| !! | AACACCAATTCATAGTTTTG+AGG | + | chr4_2:58096910-58096929 | Msa0610400:intron | 30.0% |
| !!! | ACACCAATTCATAGTTTTGA+GGG | + | chr4_2:58096911-58096930 | Msa0610400:intron | 30.0% |
| GCTGTATATAAATAAGAGGA+AGG | - | chr4_2:58097000-58097019 | None:intergenic | 30.0% | |
| CCATGCTGTATATAAATAAG+AGG | - | chr4_2:58097004-58097023 | None:intergenic | 30.0% | |
| ! | CCTCTTATTTATATACAGCA+TGG | + | chr4_2:58097001-58097020 | Msa0610400:intron | 30.0% |
| AATTGTTGAGTTATGACAAC+AGG | - | chr4_2:58097099-58097118 | None:intergenic | 30.0% | |
| GAATTGAACATCTTAGTTAC+TGG | + | chr4_2:58097164-58097183 | Msa0610400:CDS | 30.0% | |
| TGCATACTATATATTCCACA+TGG | - | chr4_2:58097199-58097218 | None:intergenic | 30.0% | |
| ATTGAAGGAACTTATCAAGT+GGG | + | chr4_2:58097288-58097307 | Msa0610400:CDS | 30.0% | |
| GGGAATGACAATTATGTATT+TGG | - | chr4_2:58097482-58097501 | None:intergenic | 30.0% | |
| GTCATTGTATACTATCTATC+AGG | + | chr4_2:58097660-58097679 | Msa0610400:CDS | 30.0% | |
| GTAAGCTACTTAGTTGAAAT+TGG | + | chr4_2:58097682-58097701 | Msa0610400:intron | 30.0% | |
| !!! | TGTATGTATACCTCCTTTTT+TGG | + | chr4_2:58097716-58097735 | Msa0610400:intron | 30.0% |
| TCAAAAAACAAGGTGAATAC+CGG | + | chr4_2:58098285-58098304 | Msa0610400:intron | 30.0% | |
| !! | CAAAACTTTAGGAAGTTTTC+CGG | - | chr4_2:58098307-58098326 | None:intergenic | 30.0% |
| ! | TCAACCAAATATTTCAAGTC+TGG | + | chr4_2:58098358-58098377 | Msa0610400:intron | 30.0% |
| TGTACCAGACTTGAAATATT+TGG | - | chr4_2:58098365-58098384 | None:intergenic | 30.0% | |
| ATATGTCAAACACAAAAGGT+TGG | - | chr4_2:58098464-58098483 | None:intergenic | 30.0% | |
| CCAAATATGTCAAACACAAA+AGG | - | chr4_2:58098468-58098487 | None:intergenic | 30.0% | |
| ! | CCTTTTGTGTTTGACATATT+TGG | + | chr4_2:58098465-58098484 | Msa0610400:intron | 30.0% |
| AAATCTACTGAAGGAAAACA+AGG | - | chr4_2:58098612-58098631 | None:intergenic | 30.0% | |
| TTTGCAAACATTAAACCTGT+TGG | - | chr4_2:58098875-58098894 | None:intergenic | 30.0% | |
| ! | TGCATCTGTAACTGTTATTT+AGG | + | chr4_2:58098900-58098919 | Msa0610400:intron | 30.0% |
| TGTCAAACTCAAAGAAGTTT+AGG | - | chr4_2:58099078-58099097 | None:intergenic | 30.0% | |
| ! | GCTTAAGGTTCTAATATAGT+TGG | - | chr4_2:58099101-58099120 | None:intergenic | 30.0% |
| ATATTAGAACCTTAAGCTGT+TGG | + | chr4_2:58099104-58099123 | Msa0610400:intron | 30.0% | |
| TATTAGAACCTTAAGCTGTT+GGG | + | chr4_2:58099105-58099124 | Msa0610400:intron | 30.0% | |
| TATGTAACAAGTTCCTTGTT+TGG | + | chr4_2:58099365-58099384 | Msa0610400:intron | 30.0% | |
| ! | ATTTTCAGATTGGCGATTTG+GGG | - | chr4_2:58095204-58095223 | None:intergenic | 35.0% |
| ! | CATTTTCAGATTGGCGATTT+GGG | - | chr4_2:58095205-58095224 | None:intergenic | 35.0% |
| ! | ACATTTTCAGATTGGCGATT+TGG | - | chr4_2:58095206-58095225 | None:intergenic | 35.0% |
| TCTGCAAATGAAGACAGTAA+CGG | + | chr4_2:58095573-58095592 | Msa0610400:CDS | 35.0% | |
| AACGGAGAACTTCATTTCAT+CGG | + | chr4_2:58095591-58095610 | Msa0610400:CDS | 35.0% | |
| CGAAACATTCTGGTGTATAA+TGG | + | chr4_2:58095672-58095691 | Msa0610400:CDS | 35.0% | |
| ! | ACAACGAAGTCTAAAATCAG+AGG | - | chr4_2:58095713-58095732 | None:intergenic | 35.0% |
| ! | GACTGCAATTCTAGTTGTAT+CGG | + | chr4_2:58095894-58095913 | Msa0610400:intron | 35.0% |
| ACATCTTACTGCAAACATCA+TGG | - | chr4_2:58095975-58095994 | None:intergenic | 35.0% | |
| ! | TGTTCTTCAGGTGAGATTTT+CGG | + | chr4_2:58096016-58096035 | Msa0610400:intron | 35.0% |
| AAGAGTCTGCATAAGAAACT+CGG | - | chr4_2:58096074-58096093 | None:intergenic | 35.0% | |
| AGTTTCTTATGCAGACTCTT+GGG | + | chr4_2:58096074-58096093 | Msa0610400:CDS | 35.0% | |
| ACTGGTAACTGTGTTAAATG+CGG | + | chr4_2:58096124-58096143 | Msa0610400:CDS | 35.0% | |
| AACACAGAAACTTACCACTT+GGG | - | chr4_2:58096220-58096239 | None:intergenic | 35.0% | |
| TTTCTTTGTGGAGTCATAAG+TGG | + | chr4_2:58096262-58096281 | Msa0610400:intron | 35.0% | |
| TTCTATTGCAGGATAGTTCA+AGG | + | chr4_2:58096302-58096321 | Msa0610400:intron | 35.0% | |
| AATTGGAATGGAACAACTAC+TGG | + | chr4_2:58096464-58096483 | Msa0610400:intron | 35.0% | |
| AATGACAATAGGCTCTATTC+AGG | - | chr4_2:58096530-58096549 | None:intergenic | 35.0% | |
| ATAGTTTACGCAGTACATTC+TGG | - | chr4_2:58096590-58096609 | None:intergenic | 35.0% | |
| GTACTCGTTATCATTGACAT+TGG | + | chr4_2:58096610-58096629 | Msa0610400:intron | 35.0% | |
| ! | GAAAGTGTATGACTGTTTGT+AGG | + | chr4_2:58096664-58096683 | Msa0610400:intron | 35.0% |
| GGCTATGATCTTAAAGCTAT+GGG | - | chr4_2:58096814-58096833 | None:intergenic | 35.0% | |
| ! | GAATTGGTGTTCTGTAATCA+GGG | - | chr4_2:58096901-58096920 | None:intergenic | 35.0% |
| ! | TGAATTGGTGTTCTGTAATC+AGG | - | chr4_2:58096902-58096921 | None:intergenic | 35.0% |
| !!! | CACCAATTCATAGTTTTGAG+GGG | + | chr4_2:58096912-58096931 | Msa0610400:intron | 35.0% |
| !! | AGTGATTTGAGAAAGTGTTG+AGG | - | chr4_2:58096959-58096978 | None:intergenic | 35.0% |
| AAATAAGAGGAAGGGATAGA+GGG | - | chr4_2:58096991-58097010 | None:intergenic | 35.0% | |
| TAAATAAGAGGAAGGGATAG+AGG | - | chr4_2:58096992-58097011 | None:intergenic | 35.0% | |
| ACTGAGATAGTAAGAGAAGT+AGG | - | chr4_2:58097027-58097046 | None:intergenic | 35.0% | |
| GCAGAAAATGAAGCTCATAA+TGG | + | chr4_2:58097142-58097161 | Msa0610400:intron | 35.0% | |
| TGGAATATATAGTATGCACG+TGG | + | chr4_2:58097201-58097220 | Msa0610400:CDS | 35.0% | |
| ! | TTCGAATTCAAACGGATTTC+TGG | + | chr4_2:58097228-58097247 | Msa0610400:CDS | 35.0% |
| !! | AATTCAAACGGATTTCTGGT+TGG | + | chr4_2:58097232-58097251 | Msa0610400:CDS | 35.0% |
| CATTGAAGGAACTTATCAAG+TGG | + | chr4_2:58097287-58097306 | Msa0610400:CDS | 35.0% | |
| ATTGTCATTCCCATACATTC+TGG | + | chr4_2:58097490-58097509 | Msa0610400:intron | 35.0% | |
| !! | CTAAAGGTACCAGAATGTAT+GGG | - | chr4_2:58097502-58097521 | None:intergenic | 35.0% |
| !! | ACTAAAGGTACCAGAATGTA+TGG | - | chr4_2:58097503-58097522 | None:intergenic | 35.0% |
| AATCTCTGTCTTGATTAAGC+AGG | + | chr4_2:58097562-58097581 | Msa0610400:intron | 35.0% | |
| TTGATGTTAGCCAAAAAAGG+AGG | - | chr4_2:58097729-58097748 | None:intergenic | 35.0% | |
| CCTTTGATGTTAGCCAAAAA+AGG | - | chr4_2:58097732-58097751 | None:intergenic | 35.0% | |
| !!! | CCTTTTTTGGCTAACATCAA+AGG | + | chr4_2:58097729-58097748 | Msa0610400:intron | 35.0% |
| TGAAGAAGCTAAATTGACAC+TGG | + | chr4_2:58097902-58097921 | Msa0610400:intron | 35.0% | |
| GAAGAAGCTAAATTGACACT+GGG | + | chr4_2:58097903-58097922 | Msa0610400:intron | 35.0% | |
| AAGAAGCTAAATTGACACTG+GGG | + | chr4_2:58097904-58097923 | Msa0610400:intron | 35.0% | |
| TTGTTGTCGAGTGACTATAA+AGG | - | chr4_2:58097994-58098013 | None:intergenic | 35.0% | |
| ATGCAAGTGAATGATAGAGA+TGG | + | chr4_2:58098087-58098106 | Msa0610400:intron | 35.0% | |
| ATGGCTAAAAGACAAGACAA+GGG | + | chr4_2:58098106-58098125 | Msa0610400:intron | 35.0% | |
| CTCTTTGGATTTGATTGCAT+AGG | + | chr4_2:58098650-58098669 | Msa0610400:intron | 35.0% | |
| ! | TTGCAATTCTTTTCTCTGGT+GGG | + | chr4_2:58098712-58098731 | Msa0610400:CDS | 35.0% |
| GAAGGTAACTTGAGCTTATA+GGG | - | chr4_2:58098799-58098818 | None:intergenic | 35.0% | |
| AGAAGGTAACTTGAGCTTAT+AGG | - | chr4_2:58098800-58098819 | None:intergenic | 35.0% | |
| GTATATGATAATTCTCCCAG+AGG | + | chr4_2:58099034-58099053 | Msa0610400:intron | 35.0% | |
| ! | ATCCAATGGCTTAACCTTTT+GGG | - | chr4_2:58099324-58099343 | None:intergenic | 35.0% |
| ! | AATCCAATGGCTTAACCTTT+TGG | - | chr4_2:58099325-58099344 | None:intergenic | 35.0% |
| TTGAATCACCTAAAGTAGAC+TGG | + | chr4_2:58099390-58099409 | Msa0610400:intron | 35.0% | |
| TAGAGATTCGACTCATCTAA+AGG | - | chr4_2:58099452-58099471 | None:intergenic | 35.0% | |
| ! | CTACTTACTGTAAGCTTTGA+TGG | + | chr4_2:58099502-58099521 | Msa0610400:CDS | 35.0% |
| GTTAATTCGAATGCCTGAGA+CGG | - | chr4_2:58095153-58095172 | None:intergenic | 40.0% | |
| TCTGTGTCTCAGTGTTTCAT+AGG | + | chr4_2:58095331-58095350 | Msa0610400:intron | 40.0% | |
| CGTTTCGTCGTGTTCTATAA+AGG | - | chr4_2:58095544-58095563 | None:intergenic | 40.0% | |
| !! | TTTCGAGAAGCATCCACTAA+AGG | - | chr4_2:58095657-58095676 | None:intergenic | 40.0% |
| TACAACTAGAATTGCAGTCG+CGG | - | chr4_2:58095893-58095912 | None:intergenic | 40.0% | |
| GAGTTTCTTATGCAGACTCT+TGG | + | chr4_2:58096073-58096092 | Msa0610400:CDS | 40.0% | |
| ! | TCCTGTGGTTCTTATTTGAC+TGG | + | chr4_2:58096106-58096125 | Msa0610400:CDS | 40.0% |
| ACCAGTCAAATAAGAACCAC+AGG | - | chr4_2:58096110-58096129 | None:intergenic | 40.0% | |
| CTGGTAACTGTGTTAAATGC+GGG | + | chr4_2:58096125-58096144 | Msa0610400:CDS | 40.0% | |
| AACTGTGTTAAATGCGGGAA+AGG | + | chr4_2:58096130-58096149 | Msa0610400:CDS | 40.0% | |
| GAACACAGAAACTTACCACT+TGG | - | chr4_2:58096221-58096240 | None:intergenic | 40.0% | |
| CTCGTTATCATTGACATTGG+TGG | + | chr4_2:58096613-58096632 | Msa0610400:intron | 40.0% | |
| GGGCTATGATCTTAAAGCTA+TGG | - | chr4_2:58096815-58096834 | None:intergenic | 40.0% | |
| GACCCCTCAAAACTATGAAT+TGG | - | chr4_2:58096917-58096936 | None:intergenic | 40.0% | |
| GTGGATGCTTCGAATTCAAA+CGG | + | chr4_2:58097220-58097239 | Msa0610400:CDS | 40.0% | |
| ! | ATCCTGCCCTAAGTTTTCTA+GGG | + | chr4_2:58097351-58097370 | Msa0610400:CDS | 40.0% |
| TAGTAATAACCTGCTTCGCA+TGG | - | chr4_2:58097415-58097434 | None:intergenic | 40.0% | |
| CAACTTCAACTGTTGCATCA+TGG | + | chr4_2:58098011-58098030 | Msa0610400:intron | 40.0% | |
| GATGGCTAAAAGACAAGACA+AGG | + | chr4_2:58098105-58098124 | Msa0610400:intron | 40.0% | |
| TGGCTAAAAGACAAGACAAG+GGG | + | chr4_2:58098107-58098126 | Msa0610400:intron | 40.0% | |
| TACTGAAGGAAAACAAGGTC+AGG | - | chr4_2:58098607-58098626 | None:intergenic | 40.0% | |
| ATTGCATAGGCTGTGATATC+TGG | + | chr4_2:58098663-58098682 | Msa0610400:intron | 40.0% | |
| CCAGAGAAAAGAATTGCAAC+AGG | - | chr4_2:58098711-58098730 | None:intergenic | 40.0% | |
| ! | CCTGTTGCAATTCTTTTCTC+TGG | + | chr4_2:58098708-58098727 | Msa0610400:CDS | 40.0% |
| ! | GTTGCAATTCTTTTCTCTGG+TGG | + | chr4_2:58098711-58098730 | Msa0610400:CDS | 40.0% |
| GCTGGATTCTATGATACTTG+CGG | + | chr4_2:58098734-58098753 | Msa0610400:CDS | 40.0% | |
| TATGATACTTGCGGCATTAC+TGG | + | chr4_2:58098743-58098762 | Msa0610400:CDS | 40.0% | |
| !! | GGAATGGTTGATTTTCGACA+TGG | - | chr4_2:58099299-58099318 | None:intergenic | 40.0% |
| ATCAACCATTCCATCCCAAA+AGG | + | chr4_2:58099307-58099326 | Msa0610400:intron | 40.0% | |
| !!! | CTTAACCTTTTGGGATGGAA+TGG | - | chr4_2:58099315-58099334 | None:intergenic | 40.0% |
| !! | AATGGCTTAACCTTTTGGGA+TGG | - | chr4_2:58099320-58099339 | None:intergenic | 40.0% |
| ATCCCAAAAGGTTAAGCCAT+TGG | + | chr4_2:58099319-58099338 | Msa0610400:intron | 40.0% | |
| AGGTGATTCAACACCAAACA+AGG | - | chr4_2:58099381-58099400 | None:intergenic | 40.0% | |
| TCCTGATAGAAAATCTGCCA+AGG | + | chr4_2:58099534-58099553 | Msa0610400:CDS | 40.0% | |
| ATAGAAAATCTGCCAAGGCA+GGG | + | chr4_2:58099539-58099558 | Msa0610400:CDS | 40.0% | |
| TTGGGGAAGTTGAGTGGAAT+GGG | - | chr4_2:58095187-58095206 | None:intergenic | 45.0% | |
| TTTGGGGAAGTTGAGTGGAA+TGG | - | chr4_2:58095188-58095207 | None:intergenic | 45.0% | |
| !! | CATTCAATCAGAAGTGTCCG+AGG | - | chr4_2:58095241-58095260 | None:intergenic | 45.0% |
| ! | CTTATTGTGGGTGTCGTATC+CGG | + | chr4_2:58095306-58095325 | Msa0610400:intron | 45.0% |
| AAACACTGAGACACAGACAC+CGG | - | chr4_2:58095328-58095347 | None:intergenic | 45.0% | |
| ATGACCTGAAAGAAGCTCTG+CGG | + | chr4_2:58095451-58095470 | Msa0610400:CDS | 45.0% | |
| AGAAGAGGTCCTGATAGCTT+GGG | + | chr4_2:58095474-58095493 | Msa0610400:CDS | 45.0% | |
| TTCTTCACACCCAAGCTATC+AGG | - | chr4_2:58095486-58095505 | None:intergenic | 45.0% | |
| TCCACTAAAGGCTGAACAAG+CGG | - | chr4_2:58095645-58095664 | None:intergenic | 45.0% | |
| GGATGCTTCTCGAAACATTC+TGG | + | chr4_2:58095662-58095681 | Msa0610400:CDS | 45.0% | |
| CTAAAATCAGAGGCAGTTGC+AGG | - | chr4_2:58095703-58095722 | None:intergenic | 45.0% | |
| ! | TCTTCAGGTGAGATTTTCGG+AGG | + | chr4_2:58096019-58096038 | Msa0610400:intron | 45.0% |
| ! | GACCATGGGCTATCATCTAT+TGG | + | chr4_2:58096185-58096204 | Msa0610400:CDS | 45.0% |
| TGCCAATAGATGATAGCCCA+TGG | - | chr4_2:58096190-58096209 | None:intergenic | 45.0% | |
| ! | ATGGGCTATCATCTATTGGC+AGG | + | chr4_2:58096189-58096208 | Msa0610400:CDS | 45.0% |
| AGGATAGTTCAAGGACCCTT+TGG | + | chr4_2:58096311-58096330 | Msa0610400:intron | 45.0% | |
| AGTTCAAGGACCCTTTGGTT+TGG | + | chr4_2:58096316-58096335 | Msa0610400:CDS | 45.0% | |
| ATGGAGCGAAAACTTATCGG+TGG | - | chr4_2:58096763-58096782 | None:intergenic | 45.0% | |
| ! | CCACTAGCCTACTAGTTGAT+GGG | + | chr4_2:58096837-58096856 | Msa0610400:intron | 45.0% |
| CCAAGTTCCCATCAACTAGT+AGG | - | chr4_2:58096847-58096866 | None:intergenic | 45.0% | |
| !! | CCTACTAGTTGATGGGAACT+TGG | + | chr4_2:58096844-58096863 | Msa0610400:intron | 45.0% |
| TGACAACAGGTCTATTCGCT+GGG | - | chr4_2:58097086-58097105 | None:intergenic | 45.0% | |
| ATGACAACAGGTCTATTCGC+TGG | - | chr4_2:58097087-58097106 | None:intergenic | 45.0% | |
| ! | CATCCTGCCCTAAGTTTTCT+AGG | + | chr4_2:58097350-58097369 | Msa0610400:CDS | 45.0% |
| ! | TCCTGCCCTAAGTTTTCTAG+GGG | + | chr4_2:58097352-58097371 | Msa0610400:CDS | 45.0% |
| GTTGCCCCCTAGAAAACTTA+GGG | - | chr4_2:58097360-58097379 | None:intergenic | 45.0% | |
| TGTTGCCCCCTAGAAAACTT+AGG | - | chr4_2:58097361-58097380 | None:intergenic | 45.0% | |
| AGCAACATATGAGCTCGCAT+TGG | - | chr4_2:58097607-58097626 | None:intergenic | 45.0% | |
| CAAGTTTGAGTCGTGGAATC+AGG | - | chr4_2:58097960-58097979 | None:intergenic | 45.0% | |
| CGAGTGACTATAAAGGTGAC+AGG | - | chr4_2:58097987-58098006 | None:intergenic | 45.0% | |
| GGCTAAAAGACAAGACAAGG+GGG | + | chr4_2:58098108-58098127 | Msa0610400:intron | 45.0% | |
| !! | AATTCTTTTCTCTGGTGGGC+TGG | + | chr4_2:58098716-58098735 | Msa0610400:CDS | 45.0% |
| !! | TATAGGGAGCACTCACAACT+GGG | - | chr4_2:58098783-58098802 | None:intergenic | 45.0% |
| !! | TTATAGGGAGCACTCACAAC+TGG | - | chr4_2:58098784-58098803 | None:intergenic | 45.0% |
| GTCATGAACTAACTGCCAAC+AGG | + | chr4_2:58098857-58098876 | Msa0610400:intron | 45.0% | |
| GAAACTGTGTGTTCTCCTCT+GGG | - | chr4_2:58099052-58099071 | None:intergenic | 45.0% | |
| TGAAACTGTGTGTTCTCCTC+TGG | - | chr4_2:58099053-58099072 | None:intergenic | 45.0% | |
| CAAAGAGCTCTTGTGTAAGG+GGG | - | chr4_2:58099163-58099182 | None:intergenic | 45.0% | |
| CCAAAGAGCTCTTGTGTAAG+GGG | - | chr4_2:58099164-58099183 | None:intergenic | 45.0% | |
| CCCAAAGAGCTCTTGTGTAA+GGG | - | chr4_2:58099165-58099184 | None:intergenic | 45.0% | |
| CCCTTACACAAGAGCTCTTT+GGG | + | chr4_2:58099162-58099181 | Msa0610400:intron | 45.0% | |
| GGATCAAATTCTAGACCACG+TGG | + | chr4_2:58099248-58099267 | Msa0610400:intron | 45.0% | |
| GAACTCGACCAGTCTACTTT+AGG | - | chr4_2:58099401-58099420 | None:intergenic | 45.0% | |
| ! | GCCTTGGCAGATTTTCTATC+AGG | - | chr4_2:58099538-58099557 | None:intergenic | 45.0% |
| GATAGAAAATCTGCCAAGGC+AGG | + | chr4_2:58099538-58099557 | Msa0610400:CDS | 45.0% | |
| TAGTTCTTTCAACCCTGCCT+TGG | - | chr4_2:58099554-58099573 | None:intergenic | 45.0% | |
| !! | TAAATAAATAAATCAATAAA+TGG | - | chr4_2:58097458-58097477 | None:intergenic | 5.0% |
| ! | GGAATTGCATTGACCGTCTC+AGG | + | chr4_2:58095137-58095156 | Msa0610400:CDS | 50.0% |
| AGTTGAGTGGAATGGGAGAG+AGG | - | chr4_2:58095180-58095199 | None:intergenic | 50.0% | |
| TTCTCCGCAGAGCTTCTTTC+AGG | - | chr4_2:58095458-58095477 | None:intergenic | 50.0% | |
| AAAGAAGCTCTGCGGAGAAG+AGG | + | chr4_2:58095459-58095478 | Msa0610400:CDS | 50.0% | |
| GAGAAGAGGTCCTGATAGCT+TGG | + | chr4_2:58095473-58095492 | Msa0610400:CDS | 50.0% | |
| TCGGTGCAACTTTGCAGCTT+AGG | + | chr4_2:58095610-58095629 | Msa0610400:CDS | 50.0% | |
| CGGTGCAACTTTGCAGCTTA+GGG | + | chr4_2:58095611-58095630 | Msa0610400:CDS | 50.0% | |
| GGTGCAACTTTGCAGCTTAG+GGG | + | chr4_2:58095612-58095631 | Msa0610400:CDS | 50.0% | |
| TCCGCTTGTTCAGCCTTTAG+TGG | + | chr4_2:58095641-58095660 | Msa0610400:CDS | 50.0% | |
| CTTGGGAATTGTTGCTCCTG+TGG | + | chr4_2:58096091-58096110 | Msa0610400:CDS | 50.0% | |
| ATTGGCAGGTAACTCCCAAG+TGG | + | chr4_2:58096203-58096222 | Msa0610400:intron | 50.0% | |
| TGCATCTCGGCCAAACCAAA+GGG | - | chr4_2:58096329-58096348 | None:intergenic | 50.0% | |
| ATGCATCTCGGCCAAACCAA+AGG | - | chr4_2:58096330-58096349 | None:intergenic | 50.0% | |
| ! | TGGTTTGGCCGAGATGCATT+TGG | + | chr4_2:58096331-58096350 | Msa0610400:CDS | 50.0% |
| TTGGCCGAGATGCATTTGGT+AGG | + | chr4_2:58096335-58096354 | Msa0610400:CDS | 50.0% | |
| TCCGCCTACCAAATGCATCT+CGG | - | chr4_2:58096342-58096361 | None:intergenic | 50.0% | |
| CTGTAGGCCAGTGAACAAGA+AGG | - | chr4_2:58096366-58096385 | None:intergenic | 50.0% | |
| CTACTGGTGTCTTGCTCTGA+TGG | + | chr4_2:58096480-58096499 | Msa0610400:intron | 50.0% | |
| CAACTAGTAGGCTAGTGGCA+GGG | - | chr4_2:58096835-58096854 | None:intergenic | 50.0% | |
| TCAACTAGTAGGCTAGTGGC+AGG | - | chr4_2:58096836-58096855 | None:intergenic | 50.0% | |
| ! | GCCACTAGCCTACTAGTTGA+TGG | + | chr4_2:58096836-58096855 | Msa0610400:intron | 50.0% |
| CCCATCAACTAGTAGGCTAG+TGG | - | chr4_2:58096840-58096859 | None:intergenic | 50.0% | |
| ! | AGTGTTGAGGCCTTAGAGCA+GGG | - | chr4_2:58096946-58096965 | None:intergenic | 50.0% |
| !! | AAGTGTTGAGGCCTTAGAGC+AGG | - | chr4_2:58096947-58096966 | None:intergenic | 50.0% |
| ACAACAGGTCTATTCGCTGG+GGG | - | chr4_2:58097084-58097103 | None:intergenic | 50.0% | |
| GACAACAGGTCTATTCGCTG+GGG | - | chr4_2:58097085-58097104 | None:intergenic | 50.0% | |
| TACTGGGAAGAGCTACCATG+TGG | + | chr4_2:58097181-58097200 | Msa0610400:CDS | 50.0% | |
| ! | GTCTGCAGGTTTTCAGAGCT+TGG | - | chr4_2:58097331-58097350 | None:intergenic | 50.0% |
| ! | CCTGCCCTAAGTTTTCTAGG+GGG | + | chr4_2:58097353-58097372 | Msa0610400:CDS | 50.0% |
| AGGCTCACAAGTTTGAGTCG+TGG | - | chr4_2:58097967-58097986 | None:intergenic | 50.0% | |
| !! | AAGACAAGGGGGTATTGCAC+AGG | + | chr4_2:58098119-58098138 | Msa0610400:intron | 50.0% |
| ! | GGGTATTGCACAGGAACGAT+GGG | + | chr4_2:58098128-58098147 | Msa0610400:intron | 50.0% |
| GGCATTACTGGATCAATGCC+TGG | + | chr4_2:58098755-58098774 | Msa0610400:CDS | 50.0% | |
| GTGCTTCACCCAACAGCTTA+AGG | - | chr4_2:58099116-58099135 | None:intergenic | 50.0% | |
| CCCCTTACACAAGAGCTCTT+TGG | + | chr4_2:58099161-58099180 | Msa0610400:intron | 50.0% | |
| GCCCAAAGAGCTCTTGTGTA+AGG | - | chr4_2:58099166-58099185 | None:intergenic | 50.0% | |
| TTCTAGACCACGTGGTCAAC+TGG | + | chr4_2:58099256-58099275 | Msa0610400:intron | 50.0% | |
| TCTATGACCAGTTGACCACG+TGG | - | chr4_2:58099266-58099285 | None:intergenic | 50.0% | |
| ACGTGGTCAACTGGTCATAG+AGG | + | chr4_2:58099265-58099284 | Msa0610400:intron | 50.0% | |
| ! | GGCGATTTGGGGAAGTTGAG+TGG | - | chr4_2:58095193-58095212 | None:intergenic | 55.0% |
| GCCGAGATGCATTTGGTAGG+CGG | + | chr4_2:58096338-58096357 | Msa0610400:CDS | 55.0% | |
| ATACCAGTGGCCTGCTGATC+TGG | - | chr4_2:58096433-58096452 | None:intergenic | 55.0% | |
| GTGTTGAGGCCTTAGAGCAG+GGG | - | chr4_2:58096945-58096964 | None:intergenic | 55.0% | |
| ATTCGCTGGGGGAGTTAGAG+TGG | - | chr4_2:58097073-58097092 | None:intergenic | 55.0% | |
| ACTTAGGGCAGGATGTCTGC+AGG | - | chr4_2:58097345-58097364 | None:intergenic | 55.0% | |
| CCCCCTAGAAAACTTAGGGC+AGG | - | chr4_2:58097356-58097375 | None:intergenic | 55.0% | |
| GAGACAGTTCCATGCGAAGC+AGG | + | chr4_2:58097403-58097422 | Msa0610400:CDS | 55.0% | |
| !! | GGGGTATTGCACAGGAACGA+TGG | + | chr4_2:58098127-58098146 | Msa0610400:intron | 55.0% |
| TGCACAGGAACGATGGGAAG+TGG | + | chr4_2:58098134-58098153 | Msa0610400:intron | 55.0% | |
| AGCACTCACAACTGGGATCC+AGG | - | chr4_2:58098776-58098795 | None:intergenic | 55.0% | |
| GGCGGAGCCTTCTTGTTCAC+TGG | + | chr4_2:58096356-58096375 | Msa0610400:CDS | 60.0% | |
| GCCAGTTGCTCCAGATCAGC+AGG | + | chr4_2:58096420-58096439 | Msa0610400:CDS | 60.0% | |
| ! | GCCTGCTGATCTGGAGCAAC+TGG | - | chr4_2:58096424-58096443 | None:intergenic | 60.0% |
| GCTCCAGATCAGCAGGCCAC+TGG | + | chr4_2:58096427-58096446 | Msa0610400:CDS | 65.0% | |
| GGTCGCTCACCCCTGCTCTA+AGG | + | chr4_2:58096933-58096952 | Msa0610400:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 58095120 | 58099594 | 58095120 | ID=Msa0610400;Name=Msa0610400 |
| chr4_2 | mRNA | 58095120 | 58099594 | 58095120 | ID=Msa0610400-mRNA-1;Parent=Msa0610400;Name=Msa0610400-mRNA-1;_AED=0.12;_eAED=0.12;_QI=11|0.75|0.55|1|0.75|0.55|9|0|420 |
| chr4_2 | exon | 58095120 | 58095223 | 58095120 | ID=Msa0610400-mRNA-1:exon:15240;Parent=Msa0610400-mRNA-1 |
| chr4_2 | exon | 58095435 | 58095693 | 58095435 | ID=Msa0610400-mRNA-1:exon:15241;Parent=Msa0610400-mRNA-1 |
| chr4_2 | exon | 58096026 | 58096210 | 58096026 | ID=Msa0610400-mRNA-1:exon:15242;Parent=Msa0610400-mRNA-1 |
| chr4_2 | exon | 58096313 | 58096448 | 58096313 | ID=Msa0610400-mRNA-1:exon:15243;Parent=Msa0610400-mRNA-1 |
| chr4_2 | exon | 58097146 | 58097258 | 58097146 | ID=Msa0610400-mRNA-1:exon:15244;Parent=Msa0610400-mRNA-1 |
| chr4_2 | exon | 58097265 | 58097424 | 58097265 | ID=Msa0610400-mRNA-1:exon:15245;Parent=Msa0610400-mRNA-1 |
| chr4_2 | exon | 58097584 | 58097681 | 58097584 | ID=Msa0610400-mRNA-1:exon:15246;Parent=Msa0610400-mRNA-1 |
| chr4_2 | exon | 58098672 | 58098783 | 58098672 | ID=Msa0610400-mRNA-1:exon:15247;Parent=Msa0610400-mRNA-1 |
| chr4_2 | exon | 58099491 | 58099594 | 58099491 | ID=Msa0610400-mRNA-1:exon:15248;Parent=Msa0610400-mRNA-1 |
| chr4_2 | five_prime_UTR | 58095120 | 58095130 | 58095120 | ID=Msa0610400-mRNA-1:five_prime_utr;Parent=Msa0610400-mRNA-1 |
| chr4_2 | CDS | 58095131 | 58095223 | 58095131 | ID=Msa0610400-mRNA-1:cds;Parent=Msa0610400-mRNA-1 |
| chr4_2 | CDS | 58095435 | 58095693 | 58095435 | ID=Msa0610400-mRNA-1:cds;Parent=Msa0610400-mRNA-1 |
| chr4_2 | CDS | 58096026 | 58096210 | 58096026 | ID=Msa0610400-mRNA-1:cds;Parent=Msa0610400-mRNA-1 |
| chr4_2 | CDS | 58096313 | 58096448 | 58096313 | ID=Msa0610400-mRNA-1:cds;Parent=Msa0610400-mRNA-1 |
| chr4_2 | CDS | 58097146 | 58097258 | 58097146 | ID=Msa0610400-mRNA-1:cds;Parent=Msa0610400-mRNA-1 |
| chr4_2 | CDS | 58097265 | 58097424 | 58097265 | ID=Msa0610400-mRNA-1:cds;Parent=Msa0610400-mRNA-1 |
| chr4_2 | CDS | 58097584 | 58097681 | 58097584 | ID=Msa0610400-mRNA-1:cds;Parent=Msa0610400-mRNA-1 |
| chr4_2 | CDS | 58098672 | 58098783 | 58098672 | ID=Msa0610400-mRNA-1:cds;Parent=Msa0610400-mRNA-1 |
| chr4_2 | CDS | 58099491 | 58099594 | 58099491 | ID=Msa0610400-mRNA-1:cds;Parent=Msa0610400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
