AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0522070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0522070 MtrunA17_Chr3g0140441 98.707 232 3 0 1 232 1 232 2.19e-174 478
Msa0522070 MtrunA17_Chr8g0360221 40.076 262 125 4 1 232 1 260 2.70e-65 206
Msa0522070 MtrunA17_Chr8g0340501 39.095 243 126 3 8 230 7 247 8.91e-51 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0522070 AT1G15215.2 44.355 248 107 4 12 230 11 256 7.83e-66 204
Msa0522070 AT3G18380.1 39.068 279 118 4 1 232 1 274 1.55e-61 196
Msa0522070 AT1G15215.4 44.118 238 102 4 12 220 11 246 3.89e-61 192
Msa0522070 AT1G15215.3 43.802 242 105 4 12 224 11 250 8.58e-61 191
Msa0522070 AT3G18380.2 38.929 280 118 5 1 232 1 275 1.06e-59 192
Msa0522070 AT3G18380.3 39.416 274 122 7 1 232 1 272 7.90e-59 189
Msa0522070 AT1G15215.1 35.484 155 69 4 12 137 11 163 1.83e-18 79.7

Find 68 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTTCAGATTGAGAAAA+TGG 0.159542 3_4:-75130637 Msa0522070:intron
GAACATAGTCTCCAACTTTC+AGG 0.226239 3_4:+75128217 None:intergenic
GACTCCCGACCTAATTAAAA+AGG 0.229909 3_4:+75127690 None:intergenic
AAATTAGAAGGTGGGTCTTT+TGG 0.246157 3_4:-75127656 Msa0522070:three_prime_UTR
TCCACTTCCACTTCCACTTC+GGG 0.246976 3_4:+75130888 None:intergenic
GAAAACAGACTTGAAACTTT+TGG 0.264857 3_4:+75130551 None:intergenic
CGAAAGGAACTGAGCGTTCC+CGG 0.320535 3_4:+75128259 None:intergenic
AGAGTCAGATTTGTTGGGTT+TGG 0.339869 3_4:-75128321 Msa0522070:CDS
AGCTTATCATCTGGTCGTGC+TGG 0.372792 3_4:-75130456 Msa0522070:CDS
AGACTATGTTCTGTGCTTCC+AGG 0.376950 3_4:-75128205 Msa0522070:intron
AAAAGTACCTCAAAATGAAT+TGG 0.377374 3_4:-75130249 Msa0522070:CDS
GGATATCATGCATTCTCCTT+TGG 0.380382 3_4:+75128053 None:intergenic
GAAGTCAGAGTCAGATTTGT+TGG 0.404906 3_4:-75128327 Msa0522070:CDS
AAATGTGACACCTGCAACCT+CGG 0.422569 3_4:+75128032 None:intergenic
TTCCACTTCCACTTCCACTT+CGG 0.427083 3_4:+75130887 None:intergenic
TATTTCTTTGACGTTCCAGC+TGG 0.431113 3_4:-75127835 Msa0522070:three_prime_UTR
CTGGGAAACCTGTCATCAAA+TGG 0.437508 3_4:-75130437 Msa0522070:CDS
GTCATGTATATCTAAGATCT+TGG 0.438432 3_4:+75127860 None:intergenic
GTAGGAAGGTACCTCAGAAT+TGG 0.440658 3_4:+75130723 None:intergenic
CAATGTGCGTAGAAATTAGA+AGG 0.441299 3_4:-75127668 Msa0522070:three_prime_UTR
GTTTGATTCTTGCCGTATCC+AGG 0.442859 3_4:+75127783 None:intergenic
TCCAACAGTTTGCAGTTACC+TGG 0.454630 3_4:-75127801 Msa0522070:three_prime_UTR
ACCTGAGTCCATTTGATGAC+AGG 0.456466 3_4:+75130429 None:intergenic
TTCCAACTCTGATGAGTCTC+GGG 0.471097 3_4:+75129773 None:intergenic
CCCCGAAGTGGAAGTGGAAG+TGG 0.472517 3_4:-75130889 Msa0522070:five_prime_UTR
AAGTCAGAGTCAGATTTGTT+GGG 0.473120 3_4:-75128326 Msa0522070:CDS
GAGAAGCCCCGAAGTGGAAG+TGG 0.476668 3_4:-75130895 None:intergenic
AGTGGAAGTGGAAGTGGAAG+TGG 0.483015 3_4:-75130883 Msa0522070:five_prime_UTR
TTGTCTTGTAGCTTATCATC+TGG 0.483456 3_4:-75130465 Msa0522070:intron
GTGGAAGTGGAAGTGGGAAG+AGG 0.488489 3_4:-75130876 Msa0522070:five_prime_UTR
GCACACAGATTTCTTAGCAC+AGG 0.502053 3_4:-75128445 Msa0522070:CDS
CACACAGATTTCTTAGCACA+GGG 0.505636 3_4:-75128444 Msa0522070:CDS
TTGCTAAGGGAATCATCAAA+AGG 0.520977 3_4:-75130609 Msa0522070:CDS
ATTCCAACTCTGATGAGTCT+CGG 0.521550 3_4:+75129772 None:intergenic
CTCAGTTCCTTTCGAGAACA+CGG 0.527058 3_4:-75128250 Msa0522070:CDS
GTCTGACCTTCCTTGCATTG+AGG 0.531906 3_4:+75130221 None:intergenic
TCCAGGTAACTGCAAACTGT+TGG 0.535870 3_4:+75127800 None:intergenic
ATTTGTTGGGTTTGGAGCTG+AGG 0.536262 3_4:-75128313 Msa0522070:CDS
TGCATGATATCCGAGGTTGC+AGG 0.537901 3_4:-75128042 Msa0522070:CDS
GTGGAAGTGGAAGTGGAAGT+GGG 0.539929 3_4:-75130882 Msa0522070:five_prime_UTR
GCATATGTGCTCACCATGCT+TGG 0.545702 3_4:+75129727 None:intergenic
CACCCGAGACTCATCAGAGT+TGG 0.547609 3_4:-75129775 Msa0522070:CDS
AGTTTGCAGTTACCTGGATA+CGG 0.552411 3_4:-75127795 Msa0522070:three_prime_UTR
GCTTATCATCTGGTCGTGCT+GGG 0.552961 3_4:-75130455 Msa0522070:CDS
AGTGGAAGTGGGAAGAGGAA+TGG 0.556223 3_4:-75130871 Msa0522070:five_prime_UTR
TTCTGGATTCACCAATTCTG+AGG 0.559706 3_4:-75130734 Msa0522070:intron
GAGTGTTCCAACCTGAAAGT+TGG 0.564740 3_4:-75128228 Msa0522070:CDS
ATAGTCTCCAACTTTCAGGT+TGG 0.570305 3_4:+75128221 None:intergenic
CCACTTCCACTTCCACTTCG+GGG 0.577237 3_4:+75130889 None:intergenic
ATTGGTTTCTCCTCAATGCA+AGG 0.583252 3_4:-75130231 Msa0522070:CDS
TCTAGGAAAGAGTTCGCTTG+AGG 0.588698 3_4:-75127898 Msa0522070:intron
GAACACTCCGTGTTCTCGAA+AGG 0.592495 3_4:+75128243 None:intergenic
ACCTGTCATCAAATGGACTC+AGG 0.592515 3_4:-75130430 Msa0522070:intron
TGGAAAGCTACTTACCCAGC+TGG 0.592982 3_4:+75127820 None:intergenic
CTCACATTGTAGAGATCCAA+AGG 0.594628 3_4:-75128069 Msa0522070:CDS
ATTTCTTTGACGTTCCAGCT+GGG 0.595424 3_4:-75127834 Msa0522070:three_prime_UTR
TGGAGCTGAGGAAGATGAGT+GGG 0.595934 3_4:-75128301 Msa0522070:CDS
GATCTTCGAAAGACCAAGCA+TGG 0.602304 3_4:-75129740 Msa0522070:intron
GTGCGTAGAAATTAGAAGGT+GGG 0.608404 3_4:-75127664 Msa0522070:three_prime_UTR
AATAGGGAGAAGCCCCGAAG+TGG 0.617953 3_4:-75130901 None:intergenic
GTTTCTCCTCAATGCAAGGA+AGG 0.620933 3_4:-75130227 Msa0522070:intron
GAAAAGAGTTGAGTTGACGA+TGG 0.642726 3_4:-75130788 Msa0522070:exon
TGTGCGTAGAAATTAGAAGG+TGG 0.648681 3_4:-75127665 Msa0522070:three_prime_UTR
ATATCTAAGATCTTGGTCTG+TGG 0.670538 3_4:+75127867 None:intergenic
TTGGAGCTGAGGAAGATGAG+TGG 0.671942 3_4:-75128302 Msa0522070:CDS
AGGAGAATGCATGATATCCG+AGG 0.689625 3_4:-75128049 Msa0522070:CDS
ACACAGATTTCTTAGCACAG+GGG 0.750555 3_4:-75128443 Msa0522070:CDS
ATATGATCACGACAACAACG+AGG 0.764532 3_4:-75128002 Msa0522070:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTGTTCCTTTATTTTTA+TGG - chr3_4:75128037-75128056 Msa0522070:CDS 15.0%
!!! AATTGTTCCTTTATTTTTAT+GGG - chr3_4:75128038-75128057 Msa0522070:CDS 15.0%
!! TAAAATTCCCATAAAAATAA+AGG + chr3_4:75128048-75128067 None:intergenic 15.0%
!! TAAAAAATAACAATTTAGTG+TGG + chr3_4:75128782-75128801 None:intergenic 15.0%
!!! TATTGTTATAATAGTTTTTG+TGG - chr3_4:75129338-75129357 Msa0522070:intron 15.0%
!! ATATATACAACTTAAATGAA+TGG + chr3_4:75129624-75129643 None:intergenic 15.0%
!! TTATGGTTTATAGTTAAAAT+TGG + chr3_4:75129679-75129698 None:intergenic 15.0%
!! ACAAAATTTAATGATTTAGT+TGG + chr3_4:75129760-75129779 None:intergenic 15.0%
!! ATATAATTGTAAAAACTTAC+AGG + chr3_4:75129941-75129960 None:intergenic 15.0%
!!! TTTTCTTTTTGTTATATTCT+AGG - chr3_4:75130441-75130460 Msa0522070:CDS 15.0%
!!! TTTTCTGTTATTATTTTAGT+AGG - chr3_4:75130784-75130803 Msa0522070:exon 15.0%
!!! TTTCTGTTATTATTTTAGTA+GGG - chr3_4:75130785-75130804 Msa0522070:exon 15.0%
!! TGAAATAAGATTAAAGGTAA+CGG + chr3_4:75127703-75127722 None:intergenic 20.0%
!! CTGAAATGAAATAAGATTAA+AGG + chr3_4:75127709-75127728 None:intergenic 20.0%
!!! TAATTAAAAGTGCATTTCAA+AGG + chr3_4:75128019-75128038 None:intergenic 20.0%
!! CTAACTAAATAACAAAGTAA+AGG + chr3_4:75128468-75128487 None:intergenic 20.0%
!!! TAAATTTTAATGTCACTGAA+AGG - chr3_4:75128708-75128727 Msa0522070:intron 20.0%
!!! TTTTTAATATTAAAAGCGTG+CGG + chr3_4:75128970-75128989 None:intergenic 20.0%
!! AAATGTTTAATGCATAATTG+AGG + chr3_4:75129253-75129272 None:intergenic 20.0%
!!! AACTTTTTCACATCTATAAT+AGG - chr3_4:75129402-75129421 Msa0522070:intron 20.0%
!!! ATTTTTTAGCATGTATGATA+CGG + chr3_4:75129493-75129512 None:intergenic 20.0%
!! ATTATAAATCACACATGAAA+TGG + chr3_4:75130412-75130431 None:intergenic 20.0%
!!! TCTCAATTTTTAATATGTGT+TGG + chr3_4:75130885-75130904 None:intergenic 20.0%
! AGTAAAAGAAAAAAGTAGGA+AGG + chr3_4:75127650-75127669 None:intergenic 25.0%
! AGAGAGTAAAAGAAAAAAGT+AGG + chr3_4:75127654-75127673 None:intergenic 25.0%
! TTCATTTCAGATTGAGAAAA+TGG - chr3_4:75127719-75127738 Msa0522070:three_prime_UTR 25.0%
! AGAAAATGGAAAAATTGCTA+AGG - chr3_4:75127733-75127752 Msa0522070:three_prime_UTR 25.0%
! GAAAATGGAAAAATTGCTAA+GGG - chr3_4:75127734-75127753 Msa0522070:three_prime_UTR 25.0%
!!! TAGTTTTTGGTAAAAATCGA+GGG + chr3_4:75127784-75127803 None:intergenic 25.0%
!!! AATTCATTTTGAGGTACTTT+TGG + chr3_4:75128108-75128127 None:intergenic 25.0%
!!! AAAAGTACCTCAAAATGAAT+TGG - chr3_4:75128107-75128126 Msa0522070:intron 25.0%
! ATGTAATTTACTTCAGAATG+CGG - chr3_4:75128285-75128304 Msa0522070:CDS 25.0%
!!! ATGTTAAACTGCATTGATTA+TGG - chr3_4:75128335-75128354 Msa0522070:intron 25.0%
!!! TTTTAATATTAAAAGCGTGC+GGG + chr3_4:75128969-75128988 None:intergenic 25.0%
!! AGTTATTGATAGTTGATTAG+TGG - chr3_4:75129010-75129029 Msa0522070:intron 25.0%
!! GTTATTGATAGTTGATTAGT+GGG - chr3_4:75129011-75129030 Msa0522070:intron 25.0%
! GTAGTATTCAGTTAATTATC+TGG - chr3_4:75129438-75129457 Msa0522070:intron 25.0%
!!! TTTTTTAGCATGTATGATAC+GGG + chr3_4:75129492-75129511 None:intergenic 25.0%
! ATACATGCTAAAAAATTGTG+AGG - chr3_4:75129497-75129516 Msa0522070:intron 25.0%
!! TCGTCTTTTATAACTATACA+GGG - chr3_4:75129560-75129579 Msa0522070:intron 25.0%
! AAGATTCTTTGACTAAAATC+TGG - chr3_4:75129589-75129608 Msa0522070:intron 25.0%
! GTTGTATATATGTATATGTG+TGG - chr3_4:75129633-75129652 Msa0522070:intron 25.0%
!! CCTATATACTATCTGTTTTA+TGG + chr3_4:75129696-75129715 None:intergenic 25.0%
! CCATAAAACAGATAGTATAT+AGG - chr3_4:75129693-75129712 Msa0522070:intron 25.0%
!!! GTAAGAGTTTTGAAAATCAT+TGG + chr3_4:75129735-75129754 None:intergenic 25.0%
! TACAATTTGTCTAAGTCTAA+AGG - chr3_4:75129856-75129875 Msa0522070:intron 25.0%
! TCAACATAAAAAATTCAGTC+CGG - chr3_4:75130078-75130097 Msa0522070:intron 25.0%
!!! CAATTGACATTTTGACTATT+TGG - chr3_4:75130598-75130617 Msa0522070:CDS 25.0%
!!! AATGCTGTTTTTTTTAGCAA+TGG - chr3_4:75130725-75130744 Msa0522070:intron 25.0%
!!! TGTTATTATTTTAGTAGGGA+AGG - chr3_4:75130789-75130808 Msa0522070:exon 25.0%
TTGGTGAATCCAGAAAAAAT+AGG + chr3_4:75127617-75127636 None:intergenic 30.0%
!!! CTAGTTTTTGGTAAAAATCG+AGG + chr3_4:75127785-75127804 None:intergenic 30.0%
!!! TGAAACTTTTGGCTAGTTTT+TGG + chr3_4:75127797-75127816 None:intergenic 30.0%
! GAAAACAGACTTGAAACTTT+TGG + chr3_4:75127808-75127827 None:intergenic 30.0%
! CTCAATCATTGTTTCTTTGT+TGG - chr3_4:75127831-75127850 Msa0522070:three_prime_UTR 30.0%
! ATCATTGTTTCTTTGTTGGT+CGG - chr3_4:75127835-75127854 Msa0522070:three_prime_UTR 30.0%
! GGGAATTTTAGATACATAGT+TGG - chr3_4:75128058-75128077 Msa0522070:CDS 30.0%
! AACAACGTTTAAGGTAATGT+AGG + chr3_4:75128163-75128182 None:intergenic 30.0%
ACATTACCTTAAACGTTGTT+AGG - chr3_4:75128163-75128182 Msa0522070:intron 30.0%
AACTATCCTAACAACGTTTA+AGG + chr3_4:75128172-75128191 None:intergenic 30.0%
TTAAACGTTGTTAGGATAGT+TGG - chr3_4:75128171-75128190 Msa0522070:intron 30.0%
TCCTGTGTATTTCAATGTTT+GGG - chr3_4:75128226-75128245 Msa0522070:CDS 30.0%
! AATACAACATATCTGAAGTG+AGG + chr3_4:75128252-75128271 None:intergenic 30.0%
!!! GTTTTAAGAAAATGACACCA+AGG - chr3_4:75128374-75128393 Msa0522070:intron 30.0%
AGTAAAGGAAAACAGAAAGT+GGG + chr3_4:75128453-75128472 None:intergenic 30.0%
AAGTAAAGGAAAACAGAAAG+TGG + chr3_4:75128454-75128473 None:intergenic 30.0%
ATATATGCAGAATTCACGAA+TGG + chr3_4:75128679-75128698 None:intergenic 30.0%
!!! CTTCAATGCCATTTTTACTT+TGG - chr3_4:75128804-75128823 Msa0522070:intron 30.0%
CTCACACAAAGTTCTTAAAT+GGG + chr3_4:75129038-75129057 None:intergenic 30.0%
TCTCACACAAAGTTCTTAAA+TGG + chr3_4:75129039-75129058 None:intergenic 30.0%
!!! CCATTTTTGGGTACTTAAAT+GGG + chr3_4:75129138-75129157 None:intergenic 30.0%
CCATTTAAGTACCCAAAAAT+GGG - chr3_4:75129136-75129155 Msa0522070:intron 30.0%
! CTCGTCTTTTATAACTATAC+AGG - chr3_4:75129559-75129578 Msa0522070:intron 30.0%
! CTTTTATAACTATACAGGGA+TGG - chr3_4:75129564-75129583 Msa0522070:intron 30.0%
AATCATTGGAGGAAGAAAAT+TGG + chr3_4:75129721-75129740 None:intergenic 30.0%
!!! AGAGTTTTGAAAATCATTGG+AGG + chr3_4:75129732-75129751 None:intergenic 30.0%
AAATCTAGTACACCCTATAA+GGG + chr3_4:75129977-75129996 None:intergenic 30.0%
AAAATCTAGTACACCCTATA+AGG + chr3_4:75129978-75129997 None:intergenic 30.0%
! AACAGTTTCTCCTTTTGTAA+AGG - chr3_4:75130007-75130026 Msa0522070:intron 30.0%
CAACATAAAAAATTCAGTCC+GGG - chr3_4:75130079-75130098 Msa0522070:intron 30.0%
! GACAGTTTCAATGTGTTTTT+AGG - chr3_4:75130234-75130253 Msa0522070:CDS 30.0%
!!! TTTCAATGTGTTTTTAGGAG+AGG - chr3_4:75130239-75130258 Msa0522070:CDS 30.0%
! GTCATGTATATCTAAGATCT+TGG + chr3_4:75130499-75130518 None:intergenic 30.0%
GAAAAAATAGGTCTGTTACG+AGG + chr3_4:75127605-75127624 None:intergenic 35.0%
!!! CGTAACAGACCTATTTTTTC+TGG - chr3_4:75127605-75127624 Msa0522070:three_prime_UTR 35.0%
TTGCTAAGGGAATCATCAAA+AGG - chr3_4:75127747-75127766 Msa0522070:three_prime_UTR 35.0%
TTGTCTTGTAGCTTATCATC+TGG - chr3_4:75127891-75127910 Msa0522070:CDS 35.0%
! GGAGAAACCAATTCATTTTG+AGG + chr3_4:75128117-75128136 None:intergenic 35.0%
GTCCTGTGTATTTCAATGTT+TGG - chr3_4:75128225-75128244 Msa0522070:CDS 35.0%
CTCAAATATTTGCGAACACA+AGG + chr3_4:75128497-75128516 None:intergenic 35.0%
!!! GTCTGAAATGAGTTTTTTGC+AGG - chr3_4:75128552-75128571 Msa0522070:intron 35.0%
! TGTGGATTAATATCAGCATG+TGG + chr3_4:75128764-75128783 None:intergenic 35.0%
!!! CAATGCCATTTTTACTTTGG+TGG - chr3_4:75128807-75128826 Msa0522070:intron 35.0%
ATGGACCACCAAAGTAAAAA+TGG + chr3_4:75128815-75128834 None:intergenic 35.0%
ATTAGGTACGGTGTCTTAAT+TGG + chr3_4:75128865-75128884 None:intergenic 35.0%
ATTAAGACACCGTACCTAAT+AGG - chr3_4:75128865-75128884 Msa0522070:intron 35.0%
CAAAAAAAATTCCCCAATGG+GGG + chr3_4:75128893-75128912 None:intergenic 35.0%
CCAAAAAAAATTCCCCAATG+GGG + chr3_4:75128894-75128913 None:intergenic 35.0%
CCCAAAAAAAATTCCCCAAT+GGG + chr3_4:75128895-75128914 None:intergenic 35.0%
!!! CCCATTGGGGAATTTTTTTT+GGG - chr3_4:75128892-75128911 Msa0522070:intron 35.0%
!!! CCATTGGGGAATTTTTTTTG+GGG - chr3_4:75128893-75128912 Msa0522070:intron 35.0%
!!! CATTGGGGAATTTTTTTTGG+GGG - chr3_4:75128894-75128913 Msa0522070:intron 35.0%
!!! ATTGGGGAATTTTTTTTGGG+GGG - chr3_4:75128895-75128914 Msa0522070:intron 35.0%
TTAAGACCCCCAACTTTAAA+CGG - chr3_4:75128941-75128960 Msa0522070:intron 35.0%
TAAGAACTTTGTGTGAGATC+TGG - chr3_4:75129041-75129060 Msa0522070:intron 35.0%
AAGAACTTTGTGTGAGATCT+GGG - chr3_4:75129042-75129061 Msa0522070:intron 35.0%
CCCATTTAAGTACCCAAAAA+TGG - chr3_4:75129135-75129154 Msa0522070:intron 35.0%
!!! CCCATTTTTGGGTACTTAAA+TGG + chr3_4:75129139-75129158 None:intergenic 35.0%
!!! TTGTGGAGACACATTTTTTG+TGG - chr3_4:75129355-75129374 Msa0522070:intron 35.0%
CAGTTAATTATCTGGTGTTC+TGG - chr3_4:75129446-75129465 Msa0522070:intron 35.0%
! ATTTTCGACAATGACATCAG+TGG - chr3_4:75129821-75129840 Msa0522070:intron 35.0%
TTCATAGCTTTCCCCTTATA+GGG - chr3_4:75129962-75129981 Msa0522070:intron 35.0%
AATCTAGTACACCCTATAAG+GGG + chr3_4:75129976-75129995 None:intergenic 35.0%
AAAGGAGAAACTGTTTAAGC+TGG + chr3_4:75130002-75130021 None:intergenic 35.0%
ACTCTGACTTCCTTTACAAA+AGG + chr3_4:75130020-75130039 None:intergenic 35.0%
! AAGTCAGAGTCAGATTTGTT+GGG - chr3_4:75130030-75130049 Msa0522070:intron 35.0%
AAACTTTGACCTAAATCACC+TGG + chr3_4:75130172-75130191 None:intergenic 35.0%
!!! TGGGTGTTATTTCTGCATTT+TGG - chr3_4:75130377-75130396 Msa0522070:intron 35.0%
! ATATCTAAGATCTTGGTCTG+TGG + chr3_4:75130492-75130511 None:intergenic 35.0%
!! TTCTCCCTCCCTTTTTAATT+AGG - chr3_4:75130657-75130676 Msa0522070:intron 35.0%
ACTCCCGACCTAATTAAAAA+GGG + chr3_4:75130668-75130687 None:intergenic 35.0%
CAATGTGCGTAGAAATTAGA+AGG - chr3_4:75130688-75130707 Msa0522070:intron 35.0%
! AAATTAGAAGGTGGGTCTTT+TGG - chr3_4:75130700-75130719 Msa0522070:intron 35.0%
!! GAAAAGAGTTGAGTTGACGA+TGG - chr3_4:75127568-75127587 Msa0522070:three_prime_UTR 40.0%
TTCTGGATTCACCAATTCTG+AGG - chr3_4:75127622-75127641 Msa0522070:three_prime_UTR 40.0%
! ATTGGTTTCTCCTCAATGCA+AGG - chr3_4:75128125-75128144 Msa0522070:intron 40.0%
GCCCAAACATTGAAATACAC+AGG + chr3_4:75128230-75128249 None:intergenic 40.0%
AGAAAATGACACCAAGGACA+AGG - chr3_4:75128380-75128399 Msa0522070:intron 40.0%
AGCAATGAGGGACTATGAAA+AGG - chr3_4:75128415-75128434 Msa0522070:intron 40.0%
AGGGACTATGAAAAGGATCA+TGG - chr3_4:75128422-75128441 Msa0522070:intron 40.0%
TTAAACCAGCACTTCTAGTG+AGG - chr3_4:75128525-75128544 Msa0522070:intron 40.0%
ATTCCAACTCTGATGAGTCT+CGG + chr3_4:75128587-75128606 None:intergenic 40.0%
TTGGTAAAGACACCACCATT+GGG + chr3_4:75128846-75128865 None:intergenic 40.0%
ATTGGTAAAGACACCACCAT+TGG + chr3_4:75128847-75128866 None:intergenic 40.0%
!!! CCCCATTGGGGAATTTTTTT+TGG - chr3_4:75128891-75128910 Msa0522070:intron 40.0%
CCCCAAAAAAAATTCCCCAA+TGG + chr3_4:75128896-75128915 None:intergenic 40.0%
TAAGACCCCCAACTTTAAAC+GGG - chr3_4:75128942-75128961 Msa0522070:intron 40.0%
AAAAGAGTGATGTGTACGTG+TGG - chr3_4:75129110-75129129 Msa0522070:intron 40.0%
AAAGAGTGATGTGTACGTGT+GGG - chr3_4:75129111-75129130 Msa0522070:intron 40.0%
!! CAATGGAGACACCCATTTTT+GGG + chr3_4:75129150-75129169 None:intergenic 40.0%
! ACAATGGAGACACCCATTTT+TGG + chr3_4:75129151-75129170 None:intergenic 40.0%
AAAAATGGGTGTCTCCATTG+TGG - chr3_4:75129150-75129169 Msa0522070:intron 40.0%
GCTATAATGAGCATCCACAA+TGG + chr3_4:75129167-75129186 None:intergenic 40.0%
AGTACCATTGATGTCACTGT+CGG - chr3_4:75129290-75129309 Msa0522070:intron 40.0%
! TGTGGTGTGTTTCAAGTGAA+AGG - chr3_4:75129651-75129670 Msa0522070:intron 40.0%
!! TAAGTCTAAAGGTTTGCTGC+AGG - chr3_4:75129867-75129886 Msa0522070:intron 40.0%
CACACAGATTTCTTAGCACA+GGG - chr3_4:75129912-75129931 Msa0522070:intron 40.0%
ACACAGATTTCTTAGCACAG+GGG - chr3_4:75129913-75129932 Msa0522070:intron 40.0%
GTTCATAGCTTTCCCCTTAT+AGG - chr3_4:75129961-75129980 Msa0522070:intron 40.0%
GAAGTCAGAGTCAGATTTGT+TGG - chr3_4:75130029-75130048 Msa0522070:intron 40.0%
!! AGAGTCAGATTTGTTGGGTT+TGG - chr3_4:75130035-75130054 Msa0522070:intron 40.0%
! ATAGTCTCCAACTTTCAGGT+TGG + chr3_4:75130138-75130157 None:intergenic 40.0%
GAACATAGTCTCCAACTTTC+AGG + chr3_4:75130142-75130161 None:intergenic 40.0%
GATGTCCTTCAACTGTTCTA+TGG + chr3_4:75130200-75130219 None:intergenic 40.0%
CTCACATTGTAGAGATCCAA+AGG - chr3_4:75130287-75130306 Msa0522070:CDS 40.0%
GGATATCATGCATTCTCCTT+TGG + chr3_4:75130306-75130325 None:intergenic 40.0%
ATATGATCACGACAACAACG+AGG - chr3_4:75130354-75130373 Msa0522070:intron 40.0%
TATTTCTTTGACGTTCCAGC+TGG - chr3_4:75130521-75130540 Msa0522070:intron 40.0%
ATTTCTTTGACGTTCCAGCT+GGG - chr3_4:75130522-75130541 Msa0522070:intron 40.0%
AGTTTGCAGTTACCTGGATA+CGG - chr3_4:75130561-75130580 Msa0522070:CDS 40.0%
CCGACCTAATTAAAAAGGGA+GGG + chr3_4:75130664-75130683 None:intergenic 40.0%
!! CCCTCCCTTTTTAATTAGGT+CGG - chr3_4:75130661-75130680 Msa0522070:intron 40.0%
!! CCTCCCTTTTTAATTAGGTC+GGG - chr3_4:75130662-75130681 Msa0522070:intron 40.0%
GACTCCCGACCTAATTAAAA+AGG + chr3_4:75130669-75130688 None:intergenic 40.0%
TGTGCGTAGAAATTAGAAGG+TGG - chr3_4:75130691-75130710 Msa0522070:intron 40.0%
GTGCGTAGAAATTAGAAGGT+GGG - chr3_4:75130692-75130711 Msa0522070:intron 40.0%
TTCCACTTCCACTTCCACTT+CGG + chr3_4:75127472-75127491 None:intergenic 45.0%
!! GTAGGAAGGTACCTCAGAAT+TGG + chr3_4:75127636-75127655 None:intergenic 45.0%
CTGGGAAACCTGTCATCAAA+TGG - chr3_4:75127919-75127938 Msa0522070:intron 45.0%
! ACCTGTCATCAAATGGACTC+AGG - chr3_4:75127926-75127945 Msa0522070:intron 45.0%
! ACCTGAGTCCATTTGATGAC+AGG + chr3_4:75127930-75127949 None:intergenic 45.0%
!! GAGGTACTTTTGGTGAGTCT+TGG + chr3_4:75128098-75128117 None:intergenic 45.0%
GTTTCTCCTCAATGCAAGGA+AGG - chr3_4:75128129-75128148 Msa0522070:intron 45.0%
AAGTGACTGGGAAGCAATGA+GGG - chr3_4:75128403-75128422 Msa0522070:intron 45.0%
!! GAAGTGCTGGTTTAAGCAGT+TGG + chr3_4:75128520-75128539 None:intergenic 45.0%
TTCCAACTCTGATGAGTCTC+GGG + chr3_4:75128586-75128605 None:intergenic 45.0%
GATCTTCGAAAGACCAAGCA+TGG - chr3_4:75128616-75128635 Msa0522070:intron 45.0%
TGGTAAAGACACCACCATTG+GGG + chr3_4:75128845-75128864 None:intergenic 45.0%
!! ATGGGGGTACCTATTAGGTA+CGG + chr3_4:75128877-75128896 None:intergenic 45.0%
TACCTAATAGGTACCCCCAT+TGG - chr3_4:75128877-75128896 Msa0522070:intron 45.0%
ACCTAATAGGTACCCCCATT+GGG - chr3_4:75128878-75128897 Msa0522070:intron 45.0%
ACTTTGTGTGAGATCTGGGT+TGG - chr3_4:75129046-75129065 Msa0522070:intron 45.0%
GGAGGGATTGAGTGCTTATT+AGG - chr3_4:75129067-75129086 Msa0522070:intron 45.0%
CACTGATCTCACTGTATTCC+TGG - chr3_4:75129192-75129211 Msa0522070:intron 45.0%
! TGTCAAATCGAAAGCATGCC+AGG + chr3_4:75129213-75129232 None:intergenic 45.0%
GATACCGACAGTGACATCAA+TGG + chr3_4:75129297-75129316 None:intergenic 45.0%
TTGCCTAGTCGTAGACATAC+AGG - chr3_4:75129792-75129811 Msa0522070:intron 45.0%
GCACACAGATTTCTTAGCAC+AGG - chr3_4:75129911-75129930 Msa0522070:intron 45.0%
! ATTTGTTGGGTTTGGAGCTG+AGG - chr3_4:75130043-75130062 Msa0522070:intron 45.0%
CTCAGTTCCTTTCGAGAACA+CGG - chr3_4:75130106-75130125 Msa0522070:intron 45.0%
GAGTGTTCCAACCTGAAAGT+TGG - chr3_4:75130128-75130147 Msa0522070:intron 45.0%
AGACTATGTTCTGTGCTTCC+AGG - chr3_4:75130151-75130170 Msa0522070:intron 45.0%
TCTGTGCTTCCAGGTGATTT+AGG - chr3_4:75130160-75130179 Msa0522070:intron 45.0%
CCTTCAACTGTTCTATGGTG+AGG + chr3_4:75130195-75130214 None:intergenic 45.0%
CCTCACCATAGAACAGTTGA+AGG - chr3_4:75130192-75130211 Msa0522070:intron 45.0%
AGGAGAATGCATGATATCCG+AGG - chr3_4:75130307-75130326 Msa0522070:intron 45.0%
AAATGTGACACCTGCAACCT+CGG + chr3_4:75130327-75130346 None:intergenic 45.0%
TCTAGGAAAGAGTTCGCTTG+AGG - chr3_4:75130458-75130477 Msa0522070:intron 45.0%
TCCAACAGTTTGCAGTTACC+TGG - chr3_4:75130555-75130574 Msa0522070:intron 45.0%
TCCAGGTAACTGCAAACTGT+TGG + chr3_4:75130559-75130578 None:intergenic 45.0%
GTTTGATTCTTGCCGTATCC+AGG + chr3_4:75130576-75130595 None:intergenic 45.0%
CCCGACCTAATTAAAAAGGG+AGG + chr3_4:75130665-75130684 None:intergenic 45.0%
TCCACTTCCACTTCCACTTC+GGG + chr3_4:75127471-75127490 None:intergenic 50.0%
AGTGGAAGTGGAAGTGGAAG+TGG - chr3_4:75127473-75127492 Msa0522070:three_prime_UTR 50.0%
GTGGAAGTGGAAGTGGAAGT+GGG - chr3_4:75127474-75127493 Msa0522070:three_prime_UTR 50.0%
AGTGGAAGTGGGAAGAGGAA+TGG - chr3_4:75127485-75127504 Msa0522070:three_prime_UTR 50.0%
AGCTTATCATCTGGTCGTGC+TGG - chr3_4:75127900-75127919 Msa0522070:intron 50.0%
GCTTATCATCTGGTCGTGCT+GGG - chr3_4:75127901-75127920 Msa0522070:intron 50.0%
GTCTGACCTTCCTTGCATTG+AGG + chr3_4:75128138-75128157 None:intergenic 50.0%
ACCAAGGACAAGGAAGTGAC+TGG - chr3_4:75128390-75128409 Msa0522070:intron 50.0%
CCAAGGACAAGGAAGTGACT+GGG - chr3_4:75128391-75128410 Msa0522070:intron 50.0%
GAAGTGACTGGGAAGCAATG+AGG - chr3_4:75128402-75128421 Msa0522070:intron 50.0%
! CTCAACCTCACTAGAAGTGC+TGG + chr3_4:75128533-75128552 None:intergenic 50.0%
GCATATGTGCTCACCATGCT+TGG + chr3_4:75128632-75128651 None:intergenic 50.0%
AAAGACACCACCATTGGGGA+TGG + chr3_4:75128841-75128860 None:intergenic 50.0%
CCTAATAGGTACCCCCATTG+GGG - chr3_4:75128879-75128898 Msa0522070:intron 50.0%
GGGGTCTTAAATAAGACCCC+GGG + chr3_4:75128931-75128950 None:intergenic 50.0%
GGGGGTCTTAAATAAGACCC+CGG + chr3_4:75128932-75128951 None:intergenic 50.0%
! TGCGGGTCCCGTTTAAAGTT+GGG + chr3_4:75128952-75128971 None:intergenic 50.0%
! TTGTGTGAGATCTGGGTTGG+AGG - chr3_4:75129049-75129068 Msa0522070:intron 50.0%
! TGTGTGAGATCTGGGTTGGA+GGG - chr3_4:75129050-75129069 Msa0522070:intron 50.0%
GTGCCTGTATGTCTACGACT+AGG + chr3_4:75129798-75129817 None:intergenic 50.0%
TTGGAGCTGAGGAAGATGAG+TGG - chr3_4:75130054-75130073 Msa0522070:intron 50.0%
TGGAGCTGAGGAAGATGAGT+GGG - chr3_4:75130055-75130074 Msa0522070:intron 50.0%
GAACACTCCGTGTTCTCGAA+AGG + chr3_4:75130116-75130135 None:intergenic 50.0%
TGCATGATATCCGAGGTTGC+AGG - chr3_4:75130314-75130333 Msa0522070:intron 50.0%
TGATCACGACAACAACGAGG+TGG - chr3_4:75130357-75130376 Msa0522070:intron 50.0%
GATCACGACAACAACGAGGT+GGG - chr3_4:75130358-75130377 Msa0522070:intron 50.0%
TGGAAAGCTACTTACCCAGC+TGG + chr3_4:75130539-75130558 None:intergenic 50.0%
CCACTTCCACTTCCACTTCG+GGG + chr3_4:75127470-75127489 None:intergenic 55.0%
GTGGAAGTGGAAGTGGGAAG+AGG - chr3_4:75127480-75127499 Msa0522070:three_prime_UTR 55.0%
CCCAGTCACTTCCTTGTCCT+TGG + chr3_4:75128394-75128413 None:intergenic 55.0%
CACCCGAGACTCATCAGAGT+TGG - chr3_4:75128581-75128600 Msa0522070:intron 55.0%
GGTCCATAGACCATCCCCAA+TGG - chr3_4:75128828-75128847 Msa0522070:intron 55.0%
CCACCATTGGGGATGGTCTA+TGG + chr3_4:75128834-75128853 None:intergenic 55.0%
CCATAGACCATCCCCAATGG+TGG - chr3_4:75128831-75128850 Msa0522070:intron 55.0%
!! CCCCAATGGGGGTACCTATT+AGG + chr3_4:75128882-75128901 None:intergenic 55.0%
TTGGGGGGTCTCTTAAGACC+CGG - chr3_4:75128910-75128929 Msa0522070:intron 55.0%
! CGGGTCCCGTTTAAAGTTGG+GGG + chr3_4:75128950-75128969 None:intergenic 55.0%
! GCGGGTCCCGTTTAAAGTTG+GGG + chr3_4:75128951-75128970 None:intergenic 55.0%
! GTGCGGGTCCCGTTTAAAGT+TGG + chr3_4:75128953-75128972 None:intergenic 55.0%
CGAAAGGAACTGAGCGTTCC+CGG + chr3_4:75130100-75130119 None:intergenic 55.0%
CCCCGAAGTGGAAGTGGAAG+TGG - chr3_4:75127467-75127486 Msa0522070:three_prime_UTR 60.0%
TGGGGGGTCTCTTAAGACCC+GGG - chr3_4:75128911-75128930 Msa0522070:intron 60.0%
GGGGGGTCTCTTAAGACCCG+GGG - chr3_4:75128912-75128931 Msa0522070:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 75127466 75130912 75127466 ID=Msa0522070;Name=Msa0522070
chr3_4 mRNA 75127466 75130912 75127466 ID=Msa0522070-mRNA-1;Parent=Msa0522070;Name=Msa0522070-mRNA-1;_AED=0.25;_eAED=0.25;_QI=121|1|1|1|0.87|1|9|405|232
chr3_4 exon 75127466 75127915 75127466 ID=Msa0522070-mRNA-1:exon:21433;Parent=Msa0522070-mRNA-1
chr3_4 exon 75128003 75128122 75128003 ID=Msa0522070-mRNA-1:exon:21432;Parent=Msa0522070-mRNA-1
chr3_4 exon 75128206 75128349 75128206 ID=Msa0522070-mRNA-1:exon:21431;Parent=Msa0522070-mRNA-1
chr3_4 exon 75128438 75128489 75128438 ID=Msa0522070-mRNA-1:exon:21430;Parent=Msa0522070-mRNA-1
chr3_4 exon 75129741 75129804 75129741 ID=Msa0522070-mRNA-1:exon:21429;Parent=Msa0522070-mRNA-1
chr3_4 exon 75130228 75130309 75130228 ID=Msa0522070-mRNA-1:exon:21428;Parent=Msa0522070-mRNA-1
chr3_4 exon 75130431 75130476 75130431 ID=Msa0522070-mRNA-1:exon:21427;Parent=Msa0522070-mRNA-1
chr3_4 exon 75130561 75130649 75130561 ID=Msa0522070-mRNA-1:exon:21426;Parent=Msa0522070-mRNA-1
chr3_4 exon 75130735 75130912 75130735 ID=Msa0522070-mRNA-1:exon:21425;Parent=Msa0522070-mRNA-1
chr3_4 five_prime_UTR 75130792 75130912 75130792 ID=Msa0522070-mRNA-1:five_prime_utr;Parent=Msa0522070-mRNA-1
chr3_4 CDS 75130735 75130791 75130735 ID=Msa0522070-mRNA-1:cds;Parent=Msa0522070-mRNA-1
chr3_4 CDS 75130561 75130649 75130561 ID=Msa0522070-mRNA-1:cds;Parent=Msa0522070-mRNA-1
chr3_4 CDS 75130431 75130476 75130431 ID=Msa0522070-mRNA-1:cds;Parent=Msa0522070-mRNA-1
chr3_4 CDS 75130228 75130309 75130228 ID=Msa0522070-mRNA-1:cds;Parent=Msa0522070-mRNA-1
chr3_4 CDS 75129741 75129804 75129741 ID=Msa0522070-mRNA-1:cds;Parent=Msa0522070-mRNA-1
chr3_4 CDS 75128438 75128489 75128438 ID=Msa0522070-mRNA-1:cds;Parent=Msa0522070-mRNA-1
chr3_4 CDS 75128206 75128349 75128206 ID=Msa0522070-mRNA-1:cds;Parent=Msa0522070-mRNA-1
chr3_4 CDS 75128003 75128122 75128003 ID=Msa0522070-mRNA-1:cds;Parent=Msa0522070-mRNA-1
chr3_4 CDS 75127871 75127915 75127871 ID=Msa0522070-mRNA-1:cds;Parent=Msa0522070-mRNA-1
chr3_4 three_prime_UTR 75127466 75127870 75127466 ID=Msa0522070-mRNA-1:three_prime_utr;Parent=Msa0522070-mRNA-1
Gene Sequence

>Msa0522070

ATGGATCGCTTGCGTCCTCGTAACAGACCTATTTTTTCTGGATTCACCAATTCTGAGATTGAGAAAATGGAAAAATTGCTAAGGGAATCATCAAAAGGACAATCATTCACCCTCGATTTTTACCAAAAACTAGCCAAAAGTTTCAACTTATCATCTGGTCGTGCTGGGAAACCTGTCATCAAATGGACTCAGATACATAGTTGGTTTCAGACTAGACTCCAAGACTCACCAAAAGTACCTCAAAATGAATTGGTTTCTCCTCAATGCAAGGAAGGAGAAAACACCCGAGACTCATCAGAGTTGGAATTTGAAGCTAGATCTTCGAAAGACCAAGCATGGTACGATGTTGAGACATTTCTTGCACACAGATTTCTTAGCACAGGGGAACCTGAAGTCAGAGTCAGATTTGTTGGGTTTGGAGCTGAGGAAGATGAGTGGGTCAACATAAAAAATTCAGTCCGGGAACGCTCAGTTCCTTTCGAGAACACGGAGTGTTCCAACCTGAAAGTTGGAGACTATGTTCTGTGCTTCCAGGAGAGGAGAGATCAAGCAATTTACTATGATGCTCACATTGTAGAGATCCAAAGGAGAATGCATGATATCCGAGGTTGCAGGTGTCACATTTTAATTCGATATGATCACGACAACAACGAGGAAAGAGTTCGCTTGAGGAGACTTTGCCACAGACCAAGATCTTAG

Protein sequence

>Msa0522070

MDRLRPRNRPIFSGFTNSEIEKMEKLLRESSKGQSFTLDFYQKLAKSFNLSSGRAGKPVIKWTQIHSWFQTRLQDSPKVPQNELVSPQCKEGENTRDSSELEFEARSSKDQAWYDVETFLAHRFLSTGEPEVRVRFVGFGAEEDEWVNIKNSVRERSVPFENTECSNLKVGDYVLCFQERRDQAIYYDAHIVEIQRRMHDIRGCRCHILIRYDHDNNEERVRLRRLCHRPRS*