Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556720 | XP_003608087.1 | 96.601 | 353 | 12 | 0 | 12 | 364 | 12 | 364 | 0.0 | 695 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556720 | sp|Q43725|CYSKM_ARATH | 75.915 | 328 | 79 | 0 | 36 | 363 | 102 | 429 | 5.68e-179 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556720 | G7JNN6 | 96.601 | 353 | 12 | 0 | 12 | 364 | 12 | 364 | 0.0 | 695 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000370 | Msa0556720 | 0.809369 | 1.957443e-50 | -8.615850e-47 |
| Msa0045810 | Msa0556720 | 0.811562 | 6.580788e-51 | -8.615850e-47 |
| Msa0046200 | Msa0556720 | 0.818676 | 1.731074e-52 | -8.615850e-47 |
| Msa0057860 | Msa0556720 | 0.818085 | 2.356085e-52 | -8.615850e-47 |
| Msa0160580 | Msa0556720 | 0.812274 | 4.603243e-51 | -8.615850e-47 |
| Msa0203880 | Msa0556720 | 0.810993 | 8.743957e-51 | -8.615850e-47 |
| Msa0206370 | Msa0556720 | 0.821309 | 4.323178e-53 | -8.615850e-47 |
| Msa0235080 | Msa0556720 | 0.803082 | 4.129845e-49 | -8.615850e-47 |
| Msa0238110 | Msa0556720 | 0.807768 | 4.300725e-50 | -8.615850e-47 |
| Msa0403720 | Msa0556720 | -0.803149 | 4.001686e-49 | -8.615850e-47 |
| Msa0472390 | Msa0556720 | 0.818446 | 1.952095e-52 | -8.615850e-47 |
| Msa0481670 | Msa0556720 | 0.802294 | 6.007120e-49 | -8.615850e-47 |
| Msa0247050 | Msa0556720 | 0.833371 | 5.541782e-56 | -8.615850e-47 |
| Msa0273360 | Msa0556720 | 0.814079 | 1.848819e-51 | -8.615850e-47 |
| Msa0311540 | Msa0556720 | 0.802336 | 5.889442e-49 | -8.615850e-47 |
| Msa0335340 | Msa0556720 | 0.805247 | 1.463748e-49 | -8.615850e-47 |
| Msa0354540 | Msa0556720 | 0.800615 | 1.326562e-48 | -8.615850e-47 |
| Msa0356240 | Msa0556720 | 0.807724 | 4.395242e-50 | -8.615850e-47 |
| Msa0356270 | Msa0556720 | 0.818959 | 1.492859e-52 | -8.615850e-47 |
| Msa0487100 | Msa0556720 | 0.817594 | 3.041667e-52 | -8.615850e-47 |
| Msa0501080 | Msa0556720 | 0.812979 | 3.228317e-51 | -8.615850e-47 |
| Msa0523550 | Msa0556720 | 0.800011 | 1.760284e-48 | -8.615850e-47 |
| Msa0523720 | Msa0556720 | 0.806383 | 8.449511e-50 | -8.615850e-47 |
| Msa0531030 | Msa0556720 | 0.832849 | 7.473665e-56 | -8.615850e-47 |
| Msa0531080 | Msa0556720 | 0.822874 | 1.875015e-53 | -8.615850e-47 |
| Msa0532660 | Msa0556720 | 0.815592 | 8.542983e-52 | -8.615850e-47 |
| Msa0540640 | Msa0556720 | 0.806322 | 8.703141e-50 | -8.615850e-47 |
| Msa0549170 | Msa0556720 | 0.810886 | 9.224332e-51 | -8.615850e-47 |
| Msa0549960 | Msa0556720 | 0.827779 | 1.295427e-54 | -8.615850e-47 |
| Msa0549970 | Msa0556720 | 0.831122 | 1.996406e-55 | -8.615850e-47 |
| Msa0556720 | Msa0567330 | 0.815514 | 8.893075e-52 | -8.615850e-47 |
| Msa0556720 | Msa0567570 | 0.818031 | 2.423588e-52 | -8.615850e-47 |
| Msa0556720 | Msa0576320 | 0.810731 | 9.964203e-51 | -8.615850e-47 |
| Msa0556720 | Msa0587920 | 0.800198 | 1.612784e-48 | -8.615850e-47 |
| Msa0556720 | Msa0589460 | 0.807624 | 4.615081e-50 | -8.615850e-47 |
| Msa0556720 | Msa0591490 | 0.816110 | 6.548220e-52 | -8.615850e-47 |
| Msa0556720 | Msa0602050 | 0.806891 | 6.598983e-50 | -8.615850e-47 |
| Msa0556720 | Msa0605480 | 0.842421 | 2.612131e-58 | -8.615850e-47 |
| Msa0556720 | Msa0611950 | 0.948267 | 1.323545e-106 | -8.615850e-47 |
| Msa0556720 | Msa0629720 | 0.829030 | 6.467084e-55 | -8.615850e-47 |
| Msa0556720 | Msa0645370 | 0.801071 | 1.070599e-48 | -8.615850e-47 |
| Msa0556720 | Msa0646010 | 0.817352 | 3.448725e-52 | -8.615850e-47 |
| Msa0556720 | Msa0646430 | 0.820412 | 6.954072e-53 | -8.615850e-47 |
| Msa0556720 | Msa0646440 | 0.834037 | 3.777573e-56 | -8.615850e-47 |
| Msa0556720 | Msa0652210 | 0.875027 | 4.257267e-68 | -8.615850e-47 |
| Msa0556720 | Msa0667600 | 0.835914 | 1.271271e-56 | -8.615850e-47 |
| Msa0556720 | Msa0686040 | 0.808053 | 3.740672e-50 | -8.615850e-47 |
| Msa0556720 | Msa0694790 | 0.895841 | 6.532014e-76 | -8.615850e-47 |
| Msa0556720 | Msa0708020 | 0.804589 | 2.009552e-49 | -8.615850e-47 |
| Msa0556720 | Msa0735010 | 0.802704 | 4.944533e-49 | -8.615850e-47 |
| Msa0556720 | Msa0773960 | 0.818979 | 1.477751e-52 | -8.615850e-47 |
| Msa0556720 | Msa0798840 | 0.800440 | 1.439990e-48 | -8.615850e-47 |
| Msa0556720 | Msa0813840 | 0.812853 | 3.439518e-51 | -8.615850e-47 |
| Msa0556720 | Msa0854380 | 0.811243 | 7.716372e-51 | -8.615850e-47 |
| Msa0556720 | Msa0880910 | 0.817049 | 4.033839e-52 | -8.615850e-47 |
| Msa0556720 | Msa0896920 | 0.824858 | 6.426700e-54 | -8.615850e-47 |
| Msa0556720 | Msa0913550 | 0.816108 | 6.553505e-52 | -8.615850e-47 |
| Msa0556720 | Msa0932140 | 0.805480 | 1.307917e-49 | -8.615850e-47 |
| Msa0556720 | Msa0932150 | 0.804638 | 1.962528e-49 | -8.615850e-47 |
| Msa0556720 | Msa0946310 | 0.805110 | 1.563675e-49 | -8.615850e-47 |
| Msa0556720 | Msa0951150 | 0.808333 | 3.260843e-50 | -8.615850e-47 |
| Msa0556720 | Msa0962290 | 0.803685 | 3.098361e-49 | -8.615850e-47 |
| Msa0556720 | Msa0967780 | 0.816745 | 4.720102e-52 | -8.615850e-47 |
| Msa0556720 | Msa0968180 | 0.808843 | 2.537238e-50 | -8.615850e-47 |
| Msa0556720 | Msa0970270 | 0.817558 | 3.097809e-52 | -8.615850e-47 |
| Msa0556720 | Msa0996980 | 0.817582 | 3.059999e-52 | -8.615850e-47 |
| Msa0556720 | Msa1015560 | 0.802142 | 6.454377e-49 | -8.615850e-47 |
| Msa0556720 | Msa1024480 | 0.811138 | 8.131522e-51 | -8.615850e-47 |
| Msa0556720 | Msa1029820 | 0.825903 | 3.637249e-54 | -8.615850e-47 |
| Msa0556720 | Msa1042300 | 0.807774 | 4.288184e-50 | -8.615850e-47 |
| Msa0556720 | Msa1063260 | 0.801696 | 7.971887e-49 | -8.615850e-47 |
| Msa0556720 | Msa1064940 | 0.810685 | 1.019591e-50 | -8.615850e-47 |
| Msa0556720 | Msa1068940 | 0.819767 | 9.769879e-53 | -8.615850e-47 |
| Msa0556720 | Msa1076280 | 0.809487 | 1.846671e-50 | -8.615850e-47 |
| Msa0556720 | Msa1100560 | 0.809510 | 1.826454e-50 | -8.615850e-47 |
| Msa0556720 | Msa1103450 | 0.805280 | 1.440383e-49 | -8.615850e-47 |
| Msa0556720 | Msa1127200 | 0.803932 | 2.752632e-49 | -8.615850e-47 |
| Msa0556720 | Msa1136050 | 0.815285 | 9.999695e-52 | -8.615850e-47 |
| Msa0556720 | Msa1136060 | 0.809179 | 2.150294e-50 | -8.615850e-47 |
| Msa0556720 | Msa1143250 | 0.809975 | 1.450233e-50 | -8.615850e-47 |
| Msa0556720 | Msa1147010 | 0.805573 | 1.250841e-49 | -8.615850e-47 |
| Msa0556720 | Msa1160540 | 0.805524 | 1.280412e-49 | -8.615850e-47 |
| Msa0556720 | Msa1165460 | 0.801028 | 1.092429e-48 | -8.615850e-47 |
| Msa0556720 | Msa1179190 | 0.844433 | 7.585019e-59 | -8.615850e-47 |
| Msa0556720 | Msa1206920 | 0.808436 | 3.100169e-50 | -8.615850e-47 |
| Msa0556720 | Msa1223990 | 0.806445 | 8.199088e-50 | -8.615850e-47 |
| Msa0556720 | Msa1233620 | 0.821973 | 3.036110e-53 | -8.615850e-47 |
| Msa0556720 | Msa1233640 | 0.800009 | 1.762166e-48 | -8.615850e-47 |
| Msa0556720 | Msa1255710 | 0.801786 | 7.640043e-49 | -8.615850e-47 |
| Msa0556720 | Msa1257200 | 0.813369 | 2.650524e-51 | -8.615850e-47 |
| Msa0556720 | Msa1263110 | 0.811584 | 6.507523e-51 | -8.615850e-47 |
| Msa0556720 | Msa1263120 | 0.812871 | 3.409114e-51 | -8.615850e-47 |
| Msa0556720 | Msa1265570 | 0.800455 | 1.429586e-48 | -8.615850e-47 |
| Msa0556720 | Msa1275840 | 0.810520 | 1.106362e-50 | -8.615850e-47 |
| Msa0556720 | Msa1275870 | 0.825733 | 3.990927e-54 | -8.615850e-47 |
| Msa0556720 | Msa1283980 | 0.813607 | 2.349790e-51 | -8.615850e-47 |
| Msa0556720 | Msa1284020 | 0.829192 | 5.906777e-55 | -8.615850e-47 |
| Msa0556720 | Msa1300590 | 0.818679 | 1.728702e-52 | -8.615850e-47 |
| Msa0556720 | Msa1314020 | 0.809637 | 1.714625e-50 | -8.615850e-47 |
| Msa0556720 | Msa1314050 | 0.826550 | 2.551666e-54 | -8.615850e-47 |
| Msa0556720 | Msa1322980 | 0.813410 | 2.596006e-51 | -8.615850e-47 |
| Msa0556720 | Msa1323080 | 0.807221 | 5.620345e-50 | -8.615850e-47 |
| Msa0556720 | Msa1334670 | 0.800916 | 1.151456e-48 | -8.615850e-47 |
| Msa0556720 | Msa1343590 | 0.814239 | 1.704551e-51 | -8.615850e-47 |
| Msa0556720 | Msa1362590 | 0.802116 | 6.533813e-49 | -8.615850e-47 |
| Msa0556720 | Msa1365230 | 0.800912 | 1.153492e-48 | -8.615850e-47 |
| Msa0556720 | Msa1380740 | 0.805637 | 1.212726e-49 | -8.615850e-47 |
| Msa0556720 | Msa1381010 | 0.800616 | 1.325691e-48 | -8.615850e-47 |
| Msa0556720 | Msa1407670 | 0.802500 | 5.448488e-49 | -8.615850e-47 |
| Msa0556720 | Msa1407810 | 0.814985 | 1.165756e-51 | -8.615850e-47 |
| Msa0556720 | Msa1409600 | 0.852657 | 3.999118e-61 | -8.615850e-47 |
| Msa0556720 | Msa1417220 | 0.807817 | 4.198836e-50 | -8.615850e-47 |
| Msa0556720 | Msa1437780 | 0.813771 | 2.162746e-51 | -8.615850e-47 |
| Msa0556720 | Msa1438510 | 0.803023 | 4.248270e-49 | -8.615850e-47 |
| Msa0556720 | Msa1447900 | 0.812283 | 4.583143e-51 | -8.615850e-47 |
| Msa0556720 | Msa1449770 | 0.805326 | 1.409200e-49 | -8.615850e-47 |
| Msa0556720 | Msa1455360 | 0.801910 | 7.204644e-49 | -8.615850e-47 |
| Msa0556720 | Msa1459610 | 0.812538 | 4.032096e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556720 | MtrunA17_Chr4g0045721 | 96.601 | 353 | 12 | 0 | 12 | 364 | 12 | 364 | 0.0 | 695 |
| Msa0556720 | MtrunA17_Chr4g0045771 | 88.187 | 364 | 34 | 2 | 1 | 364 | 1 | 355 | 0.0 | 648 |
| Msa0556720 | MtrunA17_Chr4g0045781 | 75.584 | 385 | 71 | 4 | 1 | 364 | 1 | 383 | 0.0 | 550 |
| Msa0556720 | MtrunA17_Chr5g0394491 | 70.126 | 318 | 95 | 0 | 47 | 364 | 8 | 325 | 9.57e-153 | 433 |
| Msa0556720 | MtrunA17_Chr1g0205381 | 70.126 | 318 | 95 | 0 | 47 | 364 | 8 | 325 | 4.78e-152 | 431 |
| Msa0556720 | MtrunA17_Chr1g0191041 | 71.069 | 318 | 92 | 0 | 43 | 360 | 4 | 321 | 4.83e-152 | 431 |
| Msa0556720 | MtrunA17_Chr1g0191051 | 63.057 | 314 | 116 | 0 | 47 | 360 | 7 | 320 | 3.84e-142 | 406 |
| Msa0556720 | MtrunA17_Chr7g0254401 | 57.803 | 346 | 136 | 1 | 15 | 360 | 33 | 368 | 1.68e-137 | 395 |
| Msa0556720 | MtrunA17_Chr7g0248021 | 59.937 | 317 | 127 | 0 | 46 | 362 | 60 | 376 | 2.52e-135 | 390 |
| Msa0556720 | MtrunA17_Chr1g0191061 | 54.775 | 356 | 115 | 2 | 51 | 360 | 25 | 380 | 5.45e-124 | 362 |
| Msa0556720 | MtrunA17_Chr1g0191071 | 56.180 | 267 | 110 | 2 | 95 | 360 | 1 | 261 | 1.57e-92 | 277 |
| Msa0556720 | MtrunA17_Chr5g0446431 | 27.606 | 355 | 198 | 6 | 49 | 346 | 46 | 398 | 6.33e-38 | 140 |
| Msa0556720 | MtrunA17_Chr2g0310201 | 35.766 | 137 | 52 | 5 | 111 | 220 | 6 | 133 | 1.18e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556720 | AT3G59760.3 | 75.915 | 328 | 79 | 0 | 36 | 363 | 102 | 429 | 5.78e-180 | 506 |
| Msa0556720 | AT3G59760.1 | 75.915 | 328 | 79 | 0 | 36 | 363 | 102 | 429 | 6.35e-180 | 506 |
| Msa0556720 | AT2G43750.1 | 74.545 | 330 | 84 | 0 | 34 | 363 | 62 | 391 | 2.75e-176 | 495 |
| Msa0556720 | AT2G43750.2 | 74.545 | 330 | 84 | 0 | 34 | 363 | 62 | 391 | 2.75e-176 | 495 |
| Msa0556720 | AT3G59760.2 | 75.333 | 300 | 74 | 0 | 36 | 335 | 102 | 401 | 1.59e-160 | 457 |
| Msa0556720 | AT4G14880.5 | 65.931 | 317 | 108 | 0 | 47 | 363 | 5 | 321 | 2.85e-147 | 419 |
| Msa0556720 | AT4G14880.3 | 65.931 | 317 | 108 | 0 | 47 | 363 | 5 | 321 | 2.85e-147 | 419 |
| Msa0556720 | AT4G14880.4 | 65.931 | 317 | 108 | 0 | 47 | 363 | 5 | 321 | 2.85e-147 | 419 |
| Msa0556720 | AT4G14880.2 | 65.931 | 317 | 108 | 0 | 47 | 363 | 5 | 321 | 2.85e-147 | 419 |
| Msa0556720 | AT4G14880.1 | 65.931 | 317 | 108 | 0 | 47 | 363 | 5 | 321 | 2.85e-147 | 419 |
| Msa0556720 | AT3G04940.1 | 63.836 | 318 | 115 | 0 | 43 | 360 | 4 | 321 | 1.59e-138 | 397 |
| Msa0556720 | AT3G04940.2 | 63.836 | 318 | 115 | 0 | 43 | 360 | 4 | 321 | 1.59e-138 | 397 |
| Msa0556720 | AT5G28020.2 | 63.836 | 318 | 115 | 0 | 43 | 360 | 3 | 320 | 1.94e-137 | 394 |
| Msa0556720 | AT5G28020.4 | 63.836 | 318 | 115 | 0 | 43 | 360 | 3 | 320 | 1.94e-137 | 394 |
| Msa0556720 | AT5G28020.1 | 63.836 | 318 | 115 | 0 | 43 | 360 | 3 | 320 | 1.94e-137 | 394 |
| Msa0556720 | AT5G28020.3 | 63.836 | 318 | 115 | 0 | 43 | 360 | 3 | 320 | 1.94e-137 | 394 |
| Msa0556720 | AT5G28020.6 | 63.836 | 318 | 115 | 0 | 43 | 360 | 3 | 320 | 1.94e-137 | 394 |
| Msa0556720 | AT5G28030.1 | 62.305 | 321 | 121 | 0 | 43 | 363 | 3 | 323 | 1.25e-134 | 387 |
| Msa0556720 | AT5G28030.4 | 62.305 | 321 | 121 | 0 | 43 | 363 | 3 | 323 | 1.25e-134 | 387 |
| Msa0556720 | AT5G28030.5 | 62.305 | 321 | 121 | 0 | 43 | 363 | 3 | 323 | 1.25e-134 | 387 |
| Msa0556720 | AT5G28030.2 | 62.305 | 321 | 121 | 0 | 43 | 363 | 3 | 323 | 1.25e-134 | 387 |
| Msa0556720 | AT3G61440.1 | 53.591 | 362 | 151 | 5 | 16 | 362 | 5 | 364 | 4.92e-128 | 372 |
| Msa0556720 | AT3G03630.1 | 58.750 | 320 | 122 | 1 | 42 | 361 | 94 | 403 | 8.21e-123 | 360 |
| Msa0556720 | AT3G22460.1 | 63.704 | 270 | 78 | 1 | 95 | 364 | 1 | 250 | 3.57e-119 | 345 |
| Msa0556720 | AT3G61440.2 | 58.955 | 268 | 110 | 0 | 95 | 362 | 1 | 268 | 4.42e-111 | 325 |
| Msa0556720 | AT5G28030.3 | 62.348 | 247 | 93 | 0 | 43 | 289 | 3 | 249 | 5.86e-104 | 307 |
| Msa0556720 | AT3G61440.4 | 52.258 | 310 | 131 | 5 | 16 | 310 | 5 | 312 | 8.57e-103 | 306 |
| Msa0556720 | AT3G61440.3 | 58.264 | 242 | 101 | 0 | 121 | 362 | 2 | 243 | 5.09e-98 | 291 |
| Msa0556720 | AT3G22460.2 | 69.613 | 181 | 55 | 0 | 47 | 227 | 8 | 188 | 1.28e-92 | 275 |
| Msa0556720 | AT5G28020.5 | 59.829 | 234 | 94 | 0 | 127 | 360 | 1 | 234 | 2.81e-90 | 271 |
| Msa0556720 | AT1G55880.1 | 27.446 | 368 | 207 | 6 | 37 | 346 | 30 | 395 | 1.13e-39 | 145 |
| Msa0556720 | AT1G55880.2 | 26.875 | 320 | 175 | 5 | 37 | 298 | 30 | 348 | 3.38e-34 | 129 |
Find 105 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAACCGGTGGAACTCTTTC+TGG | 0.174287 | 4_1:-54998020 | Msa0556720:CDS |
| TGCTGCTACAGCTGCATTGC+AGG | 0.226091 | 4_1:-54997277 | Msa0556720:CDS |
| TGCTGCTAAGCTTGAGCTTA+TGG | 0.244545 | 4_1:-54999235 | Msa0556720:CDS |
| CTCGAAAGCAACATACTTTC+AGG | 0.252788 | 4_1:-54997861 | Msa0556720:CDS |
| CACCAACCAGCAAGCCTTCC+TGG | 0.263764 | 4_1:+54997506 | None:intergenic |
| GATTTCTTTATCCAAATTCT+TGG | 0.286384 | 4_1:+54997694 | None:intergenic |
| CACACATAATTCAGGGTATT+GGG | 0.300262 | 4_1:-54997730 | Msa0556720:CDS |
| GTATGCACTTCAGAGTATTT+TGG | 0.302707 | 4_1:-54998372 | Msa0556720:intron |
| CACAGGACCACACATAATTC+AGG | 0.307785 | 4_1:-54997738 | Msa0556720:intron |
| CCTTGGGTGGGTTGTCTCCT+AGG | 0.310476 | 4_1:-54996655 | Msa0556720:three_prime_UTR |
| AGAGTTCTTATGAAAGCATT+TGG | 0.314655 | 4_1:-54998245 | Msa0556720:CDS |
| GAGATCATCGTTGCTGGTTT+GGG | 0.333139 | 4_1:+54999436 | None:intergenic |
| CTATGAGTGTTAGCTTTCCT+TGG | 0.338136 | 4_1:-54996769 | Msa0556720:three_prime_UTR |
| ACCTTTAGTAGCTGCTATAA+AGG | 0.342177 | 4_1:+54998313 | None:intergenic |
| CTTTCTAAACTCATTGAAAC+AGG | 0.346381 | 4_1:+54998269 | None:intergenic |
| TTTGTATCTTTCCATATCTC+TGG | 0.353997 | 4_1:+54998074 | None:intergenic |
| TGAGATCATCGTTGCTGGTT+TGG | 0.382543 | 4_1:+54999435 | None:intergenic |
| TCTTTGTCCAAGCAAAATAA+TGG | 0.384507 | 4_1:+54996805 | None:intergenic |
| AGAACACAGGGCCAGAGATA+TGG | 0.389392 | 4_1:-54998085 | Msa0556720:CDS |
| ACCGGTGGGAACACAGGAAT+TGG | 0.391141 | 4_1:-54998341 | Msa0556720:CDS |
| TTCCTTGGATTTCCATCAGT+TGG | 0.402674 | 4_1:-54996754 | Msa0556720:three_prime_UTR |
| GAACGTGTAAAATTGTTTCA+TGG | 0.403579 | 4_1:+54996878 | None:intergenic |
| AGCCCTTAGTGATACTCTTC+AGG | 0.405705 | 4_1:+54999271 | None:intergenic |
| ACTCATAGCCTTGGAATATT+CGG | 0.408095 | 4_1:+54998205 | None:intergenic |
| GTGTTCTCAAAATGCACCTT+AGG | 0.409891 | 4_1:+54998101 | None:intergenic |
| TTACTAGTATATTTCAATCA+TGG | 0.416279 | 4_1:-54999682 | Msa0556720:five_prime_UTR |
| AGCACTCCAGGAAGGCTTGC+TGG | 0.417197 | 4_1:-54997512 | Msa0556720:intron |
| AAATGCACCTTAGGATTTGA+AGG | 0.418592 | 4_1:+54998110 | None:intergenic |
| AATATTGAGATCATCGTTGC+TGG | 0.427113 | 4_1:+54999430 | None:intergenic |
| ATTTCTTTATCCAAATTCTT+GGG | 0.427230 | 4_1:+54997695 | None:intergenic |
| CATATCTTTCACCGAAGCTT+GGG | 0.435988 | 4_1:+54996957 | None:intergenic |
| GGCACTCTTGCTTTGTATTG+TGG | 0.442813 | 4_1:-54996733 | Msa0556720:three_prime_UTR |
| TTAGTCTCGGCAATTGGAAC+CGG | 0.448696 | 4_1:-54998035 | Msa0556720:CDS |
| TCCGACCTCTGTAATATCAT+TGG | 0.450501 | 4_1:+54999406 | None:intergenic |
| TGTTGAAGCATGTATGCATT+AGG | 0.450753 | 4_1:+54998143 | None:intergenic |
| AACTGCTCCACTCATAGCCT+TGG | 0.451930 | 4_1:+54998196 | None:intergenic |
| CAGGTTGTATTCCCAAGCTT+CGG | 0.453220 | 4_1:-54996968 | Msa0556720:CDS |
| GTTTGGGATTCGACAAAGAC+AGG | 0.454308 | 4_1:+54999452 | None:intergenic |
| GCCTTTATAGCAGCTACTAA+AGG | 0.455275 | 4_1:-54998314 | Msa0556720:CDS |
| AGCTGAAACGGTGGCTGATA+CGG | 0.455793 | 4_1:+54999498 | None:intergenic |
| ACATATCTTTCACCGAAGCT+TGG | 0.458571 | 4_1:+54996956 | None:intergenic |
| CCACACATAATTCAGGGTAT+TGG | 0.460806 | 4_1:-54997731 | Msa0556720:CDS |
| GTAAAATTGTTTCATGGCTC+CGG | 0.463120 | 4_1:+54996884 | None:intergenic |
| GCTAACACTCATAGAAGAAT+CGG | 0.468920 | 4_1:+54996778 | None:intergenic |
| AAACAGGTGGGAATTTCCTC+AGG | 0.469541 | 4_1:-54997303 | Msa0556720:intron |
| TGCTTACATGCACAGCTCAT+AGG | 0.475577 | 4_1:-54999312 | Msa0556720:intron |
| ACGGCGACGACAATAACAAA+AGG | 0.482422 | 4_1:+54996704 | None:intergenic |
| TGATAATCCTTCAAATCCTA+AGG | 0.485123 | 4_1:-54998117 | Msa0556720:CDS |
| CGGCGACGACAATAACAAAA+GGG | 0.492664 | 4_1:+54996705 | None:intergenic |
| GCACGAAATACACGAGATCA+TGG | 0.494622 | 4_1:+54999629 | None:intergenic |
| AAAATACAACAGAAACAAAA+CGG | 0.496982 | 4_1:+54996685 | None:intergenic |
| AGCATTATTAAAAGAAGATA+AGG | 0.497405 | 4_1:+54999601 | None:intergenic |
| TGCAAGGCAAATAGCACTCC+AGG | 0.497957 | 4_1:-54997524 | Msa0556720:CDS |
| AGAATGTGAGAAAATGCAAC+CGG | 0.512076 | 4_1:-54996903 | Msa0556720:CDS |
| AGATCCTGGTTGAGCTGAAA+CGG | 0.512803 | 4_1:+54999486 | None:intergenic |
| GAAGAAACCATTGTTGCTTG+TGG | 0.514767 | 4_1:+54999560 | None:intergenic |
| CAGAAAGGACTCATAACACC+TGG | 0.522023 | 4_1:-54998507 | Msa0556720:CDS |
| GTTTCTGTTTGTTTGTAGTG+TGG | 0.522067 | 4_1:-54996590 | Msa0556720:three_prime_UTR |
| ATAATTCAGGGTATTGGGGC+TGG | 0.523924 | 4_1:-54997725 | Msa0556720:CDS |
| TGCTAAGAGACCTGAAAATG+AGG | 0.527044 | 4_1:-54997253 | Msa0556720:CDS |
| GTAGTGTGGTTGTATTGTAG+TGG | 0.527271 | 4_1:-54996576 | Msa0556720:three_prime_UTR |
| GTCTCGGCAATTGGAACCGG+TGG | 0.532547 | 4_1:-54998032 | Msa0556720:CDS |
| GAGATATGGAAAGATACAAA+AGG | 0.534527 | 4_1:-54998071 | Msa0556720:CDS |
| GGTGGAACTCTTTCTGGAGC+TGG | 0.534617 | 4_1:-54998014 | Msa0556720:CDS |
| TATAAATAGAAAAGAGTACA+AGG | 0.540543 | 4_1:+54996542 | None:intergenic |
| AGGGGAAGATGAAAAGATCC+TGG | 0.553418 | 4_1:+54999472 | None:intergenic |
| ACAAGTAAAAGACTTGACTA+AGG | 0.556177 | 4_1:+54999535 | None:intergenic |
| AAAGCAAGAGTGCCAACTGA+TGG | 0.557553 | 4_1:+54996742 | None:intergenic |
| CATGTTGTAGTGTCAAAGAC+AGG | 0.558273 | 4_1:-54999209 | Msa0556720:intron |
| AGCTCCAGAAAGAGTTCCAC+CGG | 0.558578 | 4_1:+54998016 | None:intergenic |
| ACAGGACCACACATAATTCA+GGG | 0.566612 | 4_1:-54997737 | Msa0556720:intron |
| ACCAATTCCTGTGTTCCCAC+CGG | 0.567362 | 4_1:+54998340 | None:intergenic |
| TTACCTGAAGAGTATCACTA+AGG | 0.569604 | 4_1:-54999274 | Msa0556720:CDS |
| GAACCTACCGGTGGGAACAC+AGG | 0.590747 | 4_1:-54998347 | Msa0556720:CDS |
| ATTCTTGATGCAGAGCAGAA+AGG | 0.592032 | 4_1:-54998522 | Msa0556720:CDS |
| CTACGTATCAATCAGTGCAT+CGG | 0.594890 | 4_1:-54997894 | Msa0556720:intron |
| GAATTCTCCACAAGCAACAA+TGG | 0.598855 | 4_1:-54999567 | Msa0556720:exon |
| ATACTCTTCAGGTAAACCAT+TGG | 0.603385 | 4_1:+54999282 | None:intergenic |
| AGGACTCATAACACCTGGGA+AGG | 0.604876 | 4_1:-54998502 | Msa0556720:intron |
| GAAAGTATGTTGCTTTCGAG+AGG | 0.608190 | 4_1:+54997864 | None:intergenic |
| ACACATAATTCAGGGTATTG+GGG | 0.608497 | 4_1:-54997729 | Msa0556720:CDS |
| GCCACCGTTTCAGCTCAACC+AGG | 0.617489 | 4_1:-54999490 | Msa0556720:CDS |
| TCCTGGTTGAGCTGAAACGG+TGG | 0.618636 | 4_1:+54999489 | None:intergenic |
| GCTAAGAGACCTGAAAATGA+GGG | 0.619429 | 4_1:-54997252 | Msa0556720:CDS |
| TACCTGAAGAGTATCACTAA+GGG | 0.627372 | 4_1:-54999273 | Msa0556720:CDS |
| GAATATTCCAAGGCTATGAG+TGG | 0.632482 | 4_1:-54998203 | Msa0556720:CDS |
| AGACCGCTATAACTTCATCA+AGG | 0.636275 | 4_1:+54997672 | None:intergenic |
| TTTGGGATTCGACAAAGACA+GGG | 0.636572 | 4_1:+54999453 | None:intergenic |
| TGCCAACTGATGGAAATCCA+AGG | 0.640604 | 4_1:+54996752 | None:intergenic |
| CCTAGGAGACAACCCACCCA+AGG | 0.644420 | 4_1:+54996655 | None:intergenic |
| AAGAATCTGTCAAAACTGCA+AGG | 0.645155 | 4_1:-54997540 | Msa0556720:CDS |
| GGCGACGACAATAACAAAAG+GGG | 0.650204 | 4_1:+54996706 | None:intergenic |
| ATTCCTGTGTTCCCACCGGT+AGG | 0.651234 | 4_1:+54998344 | None:intergenic |
| GAAAGCAACATACTTTCAGG+TGG | 0.653711 | 4_1:-54997858 | Msa0556720:CDS |
| AAATGAGGGAAAGCTTATTG+TGG | 0.653863 | 4_1:-54997238 | Msa0556720:intron |
| AGCTGTAGCAGCACAACCTG+AGG | 0.655976 | 4_1:+54997287 | None:intergenic |
| CTGTCTTTGACACTACAACA+TGG | 0.658949 | 4_1:+54999210 | None:intergenic |
| AATCCTTGATGAAGTTATAG+CGG | 0.663239 | 4_1:-54997675 | Msa0556720:intron |
| TTGAAAATGAGTCTAAAACA+TGG | 0.666615 | 4_1:+54996856 | None:intergenic |
| AGGCAAATAGCACTCCAGGA+AGG | 0.669487 | 4_1:-54997520 | Msa0556720:CDS |
| AACACTCATAGAAGAATCGG+AGG | 0.674248 | 4_1:+54996781 | None:intergenic |
| CCAATACCCTGAATTATGTG+TGG | 0.679263 | 4_1:+54997731 | None:intergenic |
| TTGGGATTCGACAAAGACAG+GGG | 0.685650 | 4_1:+54999454 | None:intergenic |
| AGAAAGGACTCATAACACCT+GGG | 0.699620 | 4_1:-54998506 | Msa0556720:CDS |
| TATTGCCAATGATATTACAG+AGG | 0.723357 | 4_1:-54999411 | Msa0556720:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATTATTAGTATAAAAATA+TGG | + | chr4_1:54997379-54997398 | None:intergenic | 10.0% |
| !! | ATTAATTATGCTTTAATATA+AGG | + | chr4_1:54998871-54998890 | None:intergenic | 10.0% |
| !!! | AAAAGTAATATTTTTTAATG+AGG | + | chr4_1:54999071-54999090 | None:intergenic | 10.0% |
| !!! | TAAAAAATATTACTTTTGTA+AGG | - | chr4_1:54999074-54999093 | Msa0556720:intron | 10.0% |
| !!! | TTCTTTCTTTTTAAACATTT+TGG | - | chr4_1:54997114-54997133 | Msa0556720:intron | 15.0% |
| !! | TAGAATATAAACCTTAAATT+TGG | - | chr4_1:54997290-54997309 | Msa0556720:CDS | 15.0% |
| !! | ATAATAGTAGTAGATAATTT+CGG | - | chr4_1:54997392-54997411 | Msa0556720:intron | 15.0% |
| !! | AACTTATTATATTTCTTACT+TGG | + | chr4_1:54998444-54998463 | None:intergenic | 15.0% |
| !! | TATTAAAGCATAATTAATGA+AGG | - | chr4_1:54998873-54998892 | Msa0556720:intron | 15.0% |
| !! | ATTAAAGCATAATTAATGAA+GGG | - | chr4_1:54998874-54998893 | Msa0556720:intron | 15.0% |
| !! | CAATAAATAAAAAAATTGTG+AGG | + | chr4_1:54999284-54999303 | None:intergenic | 15.0% |
| !!! | ACAATTTTTTTATTTATTGC+AGG | - | chr4_1:54999285-54999304 | Msa0556720:CDS | 15.0% |
| !!! | GATATTTCAATTTTCAATCA+TGG | - | chr4_1:54996506-54996525 | Msa0556720:three_prime_UTR | 20.0% |
| !! | TTACTAGTATATTTCAATCA+TGG | - | chr4_1:54996590-54996609 | Msa0556720:three_prime_UTR | 20.0% |
| !! | AGCATTATTAAAAGAAGATA+AGG | + | chr4_1:54996674-54996693 | None:intergenic | 20.0% |
| !! | TTTGTTTCATTTCTATTTGT+TGG | - | chr4_1:54997160-54997179 | Msa0556720:intron | 20.0% |
| !! | ATATCAGCTAATTAATTGTA+AGG | + | chr4_1:54997515-54997534 | None:intergenic | 20.0% |
| !!! | TTATTTTATTGTTTCTGCTT+TGG | - | chr4_1:54997701-54997720 | Msa0556720:CDS | 20.0% |
| !!! | TTTTTGGATTTTGTTGTTTT+AGG | + | chr4_1:54998290-54998309 | None:intergenic | 20.0% |
| !! | ACAACAAAATCCAAAAATAA+AGG | - | chr4_1:54998293-54998312 | Msa0556720:CDS | 20.0% |
| !!! | GAATGATTTACCTTTATTTT+TGG | + | chr4_1:54998306-54998325 | None:intergenic | 20.0% |
| !! | GTAGAGAATAAAATGTTAAA+TGG | + | chr4_1:54998362-54998381 | None:intergenic | 20.0% |
| !! | ATTTCTTTATCCAAATTCTT+GGG | + | chr4_1:54998580-54998599 | None:intergenic | 20.0% |
| !!! | TTTATTTCTTGATTAACTGT+TGG | - | chr4_1:54998907-54998926 | Msa0556720:intron | 20.0% |
| !! | AAAATACAACAGAAACAAAA+CGG | + | chr4_1:54999590-54999609 | None:intergenic | 20.0% |
| !!! | TTGTATTTTCTTTTTTCCTT+GGG | - | chr4_1:54999601-54999620 | Msa0556720:five_prime_UTR | 20.0% |
| !!! | TATAAATAGAAAAGAGTACA+AGG | + | chr4_1:54999733-54999752 | None:intergenic | 20.0% |
| !!! | AAATGTGTCTTTTTTCTTAA+TGG | + | chr4_1:54999770-54999789 | None:intergenic | 20.0% |
| !! | ATTTCAATTTTCAATCATGG+AGG | - | chr4_1:54996509-54996528 | Msa0556720:three_prime_UTR | 25.0% |
| !! | TTTCAATTTTCAATCATGGA+GGG | - | chr4_1:54996510-54996529 | Msa0556720:three_prime_UTR | 25.0% |
| ! | ATTTCGGCTAAATAATTGTA+AGG | - | chr4_1:54997408-54997427 | Msa0556720:intron | 25.0% |
| ! | TTGTAAGGAATAAATGTTGT+TGG | - | chr4_1:54997423-54997442 | Msa0556720:intron | 25.0% |
| ! | TGGTATCAATGATGTTATAT+CGG | - | chr4_1:54997446-54997465 | Msa0556720:intron | 25.0% |
| ! | CACTTATATGCAAATTTATG+TGG | + | chr4_1:54997649-54997668 | None:intergenic | 25.0% |
| ! | GATTGTTAATTACTTGTTTC+TGG | - | chr4_1:54997878-54997897 | Msa0556720:CDS | 25.0% |
| ! | GATTTCTTTATCCAAATTCT+TGG | + | chr4_1:54998581-54998600 | None:intergenic | 25.0% |
| ! | GATTAATCAGAATAATGCAT+TGG | + | chr4_1:54998659-54998678 | None:intergenic | 25.0% |
| ! | TGCATTATTCTGATTAATCA+AGG | - | chr4_1:54998660-54998679 | Msa0556720:intron | 25.0% |
| !! | TTTTCCAATGGTAAGAATTT+AGG | + | chr4_1:54998952-54998971 | None:intergenic | 25.0% |
| !!! | TCTTTTTTATATACCATCCA+AGG | + | chr4_1:54999115-54999134 | None:intergenic | 25.0% |
| ! | ATAACAGAATATGATCAGAT+TGG | + | chr4_1:54999166-54999185 | None:intergenic | 25.0% |
| ! | GAGAGTAAAAGATAATTAAG+TGG | + | chr4_1:54999203-54999222 | None:intergenic | 25.0% |
| !! | TTGAAAATGAGTCTAAAACA+TGG | + | chr4_1:54999419-54999438 | None:intergenic | 25.0% |
| !! | GTTGTATTTTCTTTTTTCCT+TGG | - | chr4_1:54999600-54999619 | Msa0556720:five_prime_UTR | 25.0% |
| ACAAGTAAAAGACTTGACTA+AGG | + | chr4_1:54996740-54996759 | None:intergenic | 30.0% | |
| TATTGCCAATGATATTACAG+AGG | - | chr4_1:54996861-54996880 | Msa0556720:three_prime_UTR | 30.0% | |
| ! | TTCTATTTGTTGGTTAGTGT+TGG | - | chr4_1:54997170-54997189 | Msa0556720:intron | 30.0% |
| TAAGGAATAAATGTTGTTGG+TGG | - | chr4_1:54997426-54997445 | Msa0556720:intron | 30.0% | |
| CTTTCTAAACTCATTGAAAC+AGG | + | chr4_1:54998006-54998025 | None:intergenic | 30.0% | |
| !! | AGAGTTCTTATGAAAGCATT+TGG | - | chr4_1:54998027-54998046 | Msa0556720:CDS | 30.0% |
| TGATAATCCTTCAAATCCTA+AGG | - | chr4_1:54998155-54998174 | Msa0556720:CDS | 30.0% | |
| TTTGTATCTTTCCATATCTC+TGG | + | chr4_1:54998201-54998220 | None:intergenic | 30.0% | |
| GAGATATGGAAAGATACAAA+AGG | - | chr4_1:54998201-54998220 | Msa0556720:CDS | 30.0% | |
| !! | CAAAGTAGACATTTTAGTCT+CGG | - | chr4_1:54998224-54998243 | Msa0556720:CDS | 30.0% |
| TAAATGGAAATCAACAAGCT+AGG | + | chr4_1:54998346-54998365 | None:intergenic | 30.0% | |
| ATCAGATAAAAGCTCTTTCA+AGG | + | chr4_1:54998496-54998515 | None:intergenic | 30.0% | |
| !!! | ATTTTTTCCTGCTAAATCAC+AGG | - | chr4_1:54998517-54998536 | Msa0556720:CDS | 30.0% |
| AATCCTTGATGAAGTTATAG+CGG | - | chr4_1:54998597-54998616 | Msa0556720:intron | 30.0% | |
| CAATGGTAAGAATTTAGGTA+AGG | + | chr4_1:54998947-54998966 | None:intergenic | 30.0% | |
| CTTACCTAAATTCTTACCAT+TGG | - | chr4_1:54998945-54998964 | Msa0556720:intron | 30.0% | |
| AATTCTTACCATTGGAAAAC+AGG | - | chr4_1:54998953-54998972 | Msa0556720:intron | 30.0% | |
| TTTAATTAATCCACCTTGGA+TGG | - | chr4_1:54999099-54999118 | Msa0556720:intron | 30.0% | |
| ! | TTTTTATATACCATCCAAGG+TGG | + | chr4_1:54999112-54999131 | None:intergenic | 30.0% |
| GAACGTGTAAAATTGTTTCA+TGG | + | chr4_1:54999397-54999416 | None:intergenic | 30.0% | |
| ! | TCAACTGTATTTTGTACAAG+TGG | - | chr4_1:54999435-54999454 | Msa0556720:CDS | 30.0% |
| TCTTTGTCCAAGCAAAATAA+TGG | + | chr4_1:54999470-54999489 | None:intergenic | 30.0% | |
| ! | TATTTTCTTTTTTCCTTGGG+TGG | - | chr4_1:54999604-54999623 | Msa0556720:five_prime_UTR | 30.0% |
| ! | ATTTTCTTTTTTCCTTGGGT+GGG | - | chr4_1:54999605-54999624 | Msa0556720:five_prime_UTR | 30.0% |
| AATATTGAGATCATCGTTGC+TGG | + | chr4_1:54996845-54996864 | None:intergenic | 35.0% | |
| GCATGTAAGCAGCAAAAAAA+AGG | + | chr4_1:54996951-54996970 | None:intergenic | 35.0% | |
| ATACTCTTCAGGTAAACCAT+TGG | + | chr4_1:54996993-54997012 | None:intergenic | 35.0% | |
| !! | TTACCTGAAGAGTATCACTA+AGG | - | chr4_1:54996998-54997017 | Msa0556720:intron | 35.0% |
| !! | TACCTGAAGAGTATCACTAA+GGG | - | chr4_1:54996999-54997018 | Msa0556720:intron | 35.0% |
| ! | TGGTCAATGGGTGATATTTT+TGG | - | chr4_1:54997190-54997209 | Msa0556720:intron | 35.0% |
| GATAAGACGGTCCAAATTTA+AGG | + | chr4_1:54997304-54997323 | None:intergenic | 35.0% | |
| TTTCTTGCAATTGACAACAC+TGG | - | chr4_1:54997606-54997625 | Msa0556720:intron | 35.0% | |
| !! | GTATGCACTTCAGAGTATTT+TGG | - | chr4_1:54997900-54997919 | Msa0556720:intron | 35.0% |
| !!! | AGTATTTTGGTAGAACCTAC+CGG | - | chr4_1:54997913-54997932 | Msa0556720:intron | 35.0% |
| ACCTTTAGTAGCTGCTATAA+AGG | + | chr4_1:54997962-54997981 | None:intergenic | 35.0% | |
| !!! | TGTTTTGACCGAATATTCCA+AGG | - | chr4_1:54998059-54998078 | Msa0556720:CDS | 35.0% |
| ! | ACTCATAGCCTTGGAATATT+CGG | + | chr4_1:54998070-54998089 | None:intergenic | 35.0% |
| TGTTGAAGCATGTATGCATT+AGG | + | chr4_1:54998132-54998151 | None:intergenic | 35.0% | |
| AAATGCACCTTAGGATTTGA+AGG | + | chr4_1:54998165-54998184 | None:intergenic | 35.0% | |
| AGGAAACAACATATCAGACT+TGG | + | chr4_1:54998476-54998495 | None:intergenic | 35.0% | |
| ! | CACACATAATTCAGGGTATT+GGG | - | chr4_1:54998542-54998561 | Msa0556720:intron | 35.0% |
| !! | ACACATAATTCAGGGTATTG+GGG | - | chr4_1:54998543-54998562 | Msa0556720:intron | 35.0% |
| AAGAATCTGTCAAAACTGCA+AGG | - | chr4_1:54998732-54998751 | Msa0556720:intron | 35.0% | |
| ! | ATAAGCTTTCCCTCATTTTC+AGG | + | chr4_1:54999032-54999051 | None:intergenic | 35.0% |
| AAATGAGGGAAAGCTTATTG+TGG | - | chr4_1:54999034-54999053 | Msa0556720:intron | 35.0% | |
| GGAGTTTAATTAATCCACCT+TGG | - | chr4_1:54999095-54999114 | Msa0556720:intron | 35.0% | |
| ! | ATATGATCAGATTGGCTGAA+GGG | + | chr4_1:54999158-54999177 | None:intergenic | 35.0% |
| ! | AATATGATCAGATTGGCTGA+AGG | + | chr4_1:54999159-54999178 | None:intergenic | 35.0% |
| ! | TGTGTCTACTTCTCTTTTTC+AGG | - | chr4_1:54999336-54999355 | Msa0556720:intron | 35.0% |
| AGAATGTGAGAAAATGCAAC+CGG | - | chr4_1:54999369-54999388 | Msa0556720:intron | 35.0% | |
| GTAAAATTGTTTCATGGCTC+CGG | + | chr4_1:54999391-54999410 | None:intergenic | 35.0% | |
| ! | TATTTTGTACAAGTGGTCGA+TGG | - | chr4_1:54999442-54999461 | Msa0556720:CDS | 35.0% |
| !! | GATGGAACCATTATTTTGCT+TGG | - | chr4_1:54999460-54999479 | Msa0556720:CDS | 35.0% |
| GCTAACACTCATAGAAGAAT+CGG | + | chr4_1:54999497-54999516 | None:intergenic | 35.0% | |
| TAGCAGCAAAAACAATTCCT+AGG | + | chr4_1:54999637-54999656 | None:intergenic | 35.0% | |
| GTTTCTGTTTGTTTGTAGTG+TGG | - | chr4_1:54999682-54999701 | Msa0556720:five_prime_UTR | 35.0% | |
| GAATTCTCCACAAGCAACAA+TGG | - | chr4_1:54996705-54996724 | Msa0556720:three_prime_UTR | 40.0% | |
| ! | GAAGAAACCATTGTTGCTTG+TGG | + | chr4_1:54996715-54996734 | None:intergenic | 40.0% |
| ! | TTTGGGATTCGACAAAGACA+GGG | + | chr4_1:54996822-54996841 | None:intergenic | 40.0% |
| GCCAATGATATTACAGAGGT+CGG | - | chr4_1:54996865-54996884 | Msa0556720:three_prime_UTR | 40.0% | |
| TCCGACCTCTGTAATATCAT+TGG | + | chr4_1:54996869-54996888 | None:intergenic | 40.0% | |
| CTGTCTTTGACACTACAACA+TGG | + | chr4_1:54997065-54997084 | None:intergenic | 40.0% | |
| CATGTTGTAGTGTCAAAGAC+AGG | - | chr4_1:54997063-54997082 | Msa0556720:intron | 40.0% | |
| !! | TGTTGGTTAGTGTTGGTCAA+TGG | - | chr4_1:54997177-54997196 | Msa0556720:intron | 40.0% |
| !! | GTTGGTTAGTGTTGGTCAAT+GGG | - | chr4_1:54997178-54997197 | Msa0556720:intron | 40.0% |
| ACCGTCTTATCTTAACCAGA+CGG | - | chr4_1:54997313-54997332 | Msa0556720:intron | 40.0% | |
| ACCGTCTGGTTAAGATAAGA+CGG | + | chr4_1:54997317-54997336 | None:intergenic | 40.0% | |
| GCTATAGCGTTATAGCATAG+CGG | - | chr4_1:54997468-54997487 | Msa0556720:intron | 40.0% | |
| TACGCTACAATGCTAAGCAA+TGG | + | chr4_1:54997542-54997561 | None:intergenic | 40.0% | |
| TTGCAATTGACAACACTGGT+TGG | - | chr4_1:54997610-54997629 | Msa0556720:intron | 40.0% | |
| ATGCTATAACCTATCCTGCA+AGG | + | chr4_1:54997729-54997748 | None:intergenic | 40.0% | |
| ATTCTTGATGCAGAGCAGAA+AGG | - | chr4_1:54997750-54997769 | Msa0556720:intron | 40.0% | |
| AGAAAGGACTCATAACACCT+GGG | - | chr4_1:54997766-54997785 | Msa0556720:intron | 40.0% | |
| ! | CTTTCGTATTTTACCTTCCC+AGG | + | chr4_1:54997786-54997805 | None:intergenic | 40.0% |
| GCCTTTATAGCAGCTACTAA+AGG | - | chr4_1:54997958-54997977 | Msa0556720:intron | 40.0% | |
| GAATATTCCAAGGCTATGAG+TGG | - | chr4_1:54998069-54998088 | Msa0556720:CDS | 40.0% | |
| GTGTTCTCAAAATGCACCTT+AGG | + | chr4_1:54998174-54998193 | None:intergenic | 40.0% | |
| !! | AAGGTGCATTTTGAGAACAC+AGG | - | chr4_1:54998174-54998193 | Msa0556720:CDS | 40.0% |
| !! | AGGTGCATTTTGAGAACACA+GGG | - | chr4_1:54998175-54998194 | Msa0556720:CDS | 40.0% |
| !! | GACATTTTAGTCTCGGCAAT+TGG | - | chr4_1:54998231-54998250 | Msa0556720:CDS | 40.0% |
| CTACGTATCAATCAGTGCAT+CGG | - | chr4_1:54998378-54998397 | Msa0556720:intron | 40.0% | |
| !! | GAAAGTATGTTGCTTTCGAG+AGG | + | chr4_1:54998411-54998430 | None:intergenic | 40.0% |
| CTCGAAAGCAACATACTTTC+AGG | - | chr4_1:54998411-54998430 | Msa0556720:intron | 40.0% | |
| GAAAGCAACATACTTTCAGG+TGG | - | chr4_1:54998414-54998433 | Msa0556720:intron | 40.0% | |
| ACAGGACCACACATAATTCA+GGG | - | chr4_1:54998535-54998554 | Msa0556720:CDS | 40.0% | |
| CCAATACCCTGAATTATGTG+TGG | + | chr4_1:54998544-54998563 | None:intergenic | 40.0% | |
| CCACACATAATTCAGGGTAT+TGG | - | chr4_1:54998541-54998560 | Msa0556720:CDS | 40.0% | |
| !!! | TGGTTTTGTGCCCAAGAATT+TGG | - | chr4_1:54998567-54998586 | Msa0556720:intron | 40.0% |
| AGACCGCTATAACTTCATCA+AGG | + | chr4_1:54998603-54998622 | None:intergenic | 40.0% | |
| ! | CTTTTCTGATTGTCTGCATG+TGG | - | chr4_1:54998687-54998706 | Msa0556720:intron | 40.0% |
| ! | TGGCAACTTTTGCAGATATC+CGG | - | chr4_1:54998707-54998726 | Msa0556720:intron | 40.0% |
| !! | AGTTTTGACAGATTCTTCGC+CGG | + | chr4_1:54998729-54998748 | None:intergenic | 40.0% |
| TCTTACCATTGGAAAACAGG+TGG | - | chr4_1:54998956-54998975 | Msa0556720:intron | 40.0% | |
| CTTACCATTGGAAAACAGGT+GGG | - | chr4_1:54998957-54998976 | Msa0556720:intron | 40.0% | |
| ! | AATTCCCACCTGTTTTCCAA+TGG | + | chr4_1:54998964-54998983 | None:intergenic | 40.0% |
| TGCTAAGAGACCTGAAAATG+AGG | - | chr4_1:54999019-54999038 | Msa0556720:intron | 40.0% | |
| GCTAAGAGACCTGAAAATGA+GGG | - | chr4_1:54999020-54999039 | Msa0556720:intron | 40.0% | |
| CATATCTTTCACCGAAGCTT+GGG | + | chr4_1:54999318-54999337 | None:intergenic | 40.0% | |
| ACATATCTTTCACCGAAGCT+TGG | + | chr4_1:54999319-54999338 | None:intergenic | 40.0% | |
| AACACTCATAGAAGAATCGG+AGG | + | chr4_1:54999494-54999513 | None:intergenic | 40.0% | |
| !! | CTATGAGTGTTAGCTTTCCT+TGG | - | chr4_1:54999503-54999522 | Msa0556720:CDS | 40.0% |
| TTCCTTGGATTTCCATCAGT+TGG | - | chr4_1:54999518-54999537 | Msa0556720:CDS | 40.0% | |
| !!! | TTGTTTTTGCTGCTACTTCG+CGG | - | chr4_1:54999642-54999661 | Msa0556720:five_prime_UTR | 40.0% |
| GTAGTGTGGTTGTATTGTAG+TGG | - | chr4_1:54999696-54999715 | Msa0556720:five_prime_UTR | 40.0% | |
| GCACGAAATACACGAGATCA+TGG | + | chr4_1:54996646-54996665 | None:intergenic | 45.0% | |
| AGATCCTGGTTGAGCTGAAA+CGG | + | chr4_1:54996789-54996808 | None:intergenic | 45.0% | |
| AGGGGAAGATGAAAAGATCC+TGG | + | chr4_1:54996803-54996822 | None:intergenic | 45.0% | |
| TTGGGATTCGACAAAGACAG+GGG | + | chr4_1:54996821-54996840 | None:intergenic | 45.0% | |
| ! | GTTTGGGATTCGACAAAGAC+AGG | + | chr4_1:54996823-54996842 | None:intergenic | 45.0% |
| !! | GAGATCATCGTTGCTGGTTT+GGG | + | chr4_1:54996839-54996858 | None:intergenic | 45.0% |
| ! | TGAGATCATCGTTGCTGGTT+TGG | + | chr4_1:54996840-54996859 | None:intergenic | 45.0% |
| TGCTTACATGCACAGCTCAT+AGG | - | chr4_1:54996960-54996979 | Msa0556720:CDS | 45.0% | |
| GCTCATAGGAAAAACGCCAA+TGG | - | chr4_1:54996974-54996993 | Msa0556720:intron | 45.0% | |
| AGCCCTTAGTGATACTCTTC+AGG | + | chr4_1:54997004-54997023 | None:intergenic | 45.0% | |
| TGCTGCTAAGCTTGAGCTTA+TGG | - | chr4_1:54997037-54997056 | Msa0556720:intron | 45.0% | |
| !!! | GGTGATATTTTTGGATCCCG+AGG | - | chr4_1:54997199-54997218 | Msa0556720:intron | 45.0% |
| TATGCATGACTGCATGTCCT+CGG | + | chr4_1:54997219-54997238 | None:intergenic | 45.0% | |
| ! | TTTCTGCTTTGGTTCCTTGC+AGG | - | chr4_1:54997712-54997731 | Msa0556720:CDS | 45.0% |
| CAGAAAGGACTCATAACACC+TGG | - | chr4_1:54997765-54997784 | Msa0556720:intron | 45.0% | |
| !! | ATTTTGGTAGAACCTACCGG+TGG | - | chr4_1:54997916-54997935 | Msa0556720:intron | 45.0% |
| ! | TTTTGGTAGAACCTACCGGT+GGG | - | chr4_1:54997917-54997936 | Msa0556720:intron | 45.0% |
| TTAGTCTCGGCAATTGGAAC+CGG | - | chr4_1:54998237-54998256 | Msa0556720:CDS | 45.0% | |
| CACAGGACCACACATAATTC+AGG | - | chr4_1:54998534-54998553 | Msa0556720:CDS | 45.0% | |
| !! | ATAATTCAGGGTATTGGGGC+TGG | - | chr4_1:54998547-54998566 | Msa0556720:intron | 45.0% |
| AAACAGGTGGGAATTTCCTC+AGG | - | chr4_1:54998969-54998988 | Msa0556720:intron | 45.0% | |
| CAGGTTGTATTCCCAAGCTT+CGG | - | chr4_1:54999304-54999323 | Msa0556720:intron | 45.0% | |
| TGCCAACTGATGGAAATCCA+AGG | + | chr4_1:54999523-54999542 | None:intergenic | 45.0% | |
| !! | AAAGCAAGAGTGCCAACTGA+TGG | + | chr4_1:54999533-54999552 | None:intergenic | 45.0% |
| GGCACTCTTGCTTTGTATTG+TGG | - | chr4_1:54999539-54999558 | Msa0556720:CDS | 45.0% | |
| GGCGACGACAATAACAAAAG+GGG | + | chr4_1:54999569-54999588 | None:intergenic | 45.0% | |
| CGGCGACGACAATAACAAAA+GGG | + | chr4_1:54999570-54999589 | None:intergenic | 45.0% | |
| ACGGCGACGACAATAACAAA+AGG | + | chr4_1:54999571-54999590 | None:intergenic | 45.0% | |
| !! | TATTATTAGTATAAAAATAT+GGG | + | chr4_1:54997378-54997397 | None:intergenic | 5.0% |
| AGCTGAAACGGTGGCTGATA+CGG | + | chr4_1:54996777-54996796 | None:intergenic | 50.0% | |
| ATGCATGACTGCATGTCCTC+GGG | + | chr4_1:54997218-54997237 | None:intergenic | 50.0% | |
| ! | GCTTTGGTTCCTTGCAGGAT+AGG | - | chr4_1:54997717-54997736 | Msa0556720:CDS | 50.0% |
| AGGACTCATAACACCTGGGA+AGG | - | chr4_1:54997770-54997789 | Msa0556720:intron | 50.0% | |
| ACCAATTCCTGTGTTCCCAC+CGG | + | chr4_1:54997935-54997954 | None:intergenic | 50.0% | |
| AACTGCTCCACTCATAGCCT+TGG | + | chr4_1:54998079-54998098 | None:intergenic | 50.0% | |
| AGAACACAGGGCCAGAGATA+TGG | - | chr4_1:54998187-54998206 | Msa0556720:CDS | 50.0% | |
| AGCTCCAGAAAGAGTTCCAC+CGG | + | chr4_1:54998259-54998278 | None:intergenic | 50.0% | |
| GTGTGGTCCTGTGATTTAGC+AGG | + | chr4_1:54998527-54998546 | None:intergenic | 50.0% | |
| TGCAAGGCAAATAGCACTCC+AGG | - | chr4_1:54998748-54998767 | Msa0556720:intron | 50.0% | |
| AGGCAAATAGCACTCCAGGA+AGG | - | chr4_1:54998752-54998771 | Msa0556720:intron | 50.0% | |
| TCCTGGTTGAGCTGAAACGG+TGG | + | chr4_1:54996786-54996805 | None:intergenic | 55.0% | |
| TCTGGACAGATCTCACCGTC+TGG | + | chr4_1:54997331-54997350 | None:intergenic | 55.0% | |
| GACGGTGAGATCTGTCCAGA+AGG | - | chr4_1:54997331-54997350 | Msa0556720:intron | 55.0% | |
| GTGAGATCTGTCCAGAAGGC+AGG | - | chr4_1:54997335-54997354 | Msa0556720:intron | 55.0% | |
| ATGCATGCAGTCCTGCCTTC+TGG | + | chr4_1:54997349-54997368 | None:intergenic | 55.0% | |
| ATTCCTGTGTTCCCACCGGT+AGG | + | chr4_1:54997931-54997950 | None:intergenic | 55.0% | |
| ACCGGTGGGAACACAGGAAT+TGG | - | chr4_1:54997931-54997950 | Msa0556720:intron | 55.0% | |
| GGAACCGGTGGAACTCTTTC+TGG | - | chr4_1:54998252-54998271 | Msa0556720:CDS | 55.0% | |
| !! | GGTGGAACTCTTTCTGGAGC+TGG | - | chr4_1:54998258-54998277 | Msa0556720:CDS | 55.0% |
| AGCTGTAGCAGCACAACCTG+AGG | + | chr4_1:54998988-54999007 | None:intergenic | 55.0% | |
| TGCTGCTACAGCTGCATTGC+AGG | - | chr4_1:54998995-54999014 | Msa0556720:intron | 55.0% | |
| GCCACCGTTTCAGCTCAACC+AGG | - | chr4_1:54996782-54996801 | Msa0556720:three_prime_UTR | 60.0% | |
| GAACCTACCGGTGGGAACAC+AGG | - | chr4_1:54997925-54997944 | Msa0556720:intron | 60.0% | |
| GTCTCGGCAATTGGAACCGG+TGG | - | chr4_1:54998240-54998259 | Msa0556720:CDS | 60.0% | |
| AGCACTCCAGGAAGGCTTGC+TGG | - | chr4_1:54998760-54998779 | Msa0556720:intron | 60.0% | |
| !! | CTCCAGGAAGGCTTGCTGGT+TGG | - | chr4_1:54998764-54998783 | Msa0556720:intron | 60.0% |
| CACCAACCAGCAAGCCTTCC+TGG | + | chr4_1:54998769-54998788 | None:intergenic | 60.0% | |
| CCTAGGAGACAACCCACCCA+AGG | + | chr4_1:54999620-54999639 | None:intergenic | 60.0% | |
| !! | CCTTGGGTGGGTTGTCTCCT+AGG | - | chr4_1:54999617-54999636 | Msa0556720:five_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 54996502 | 54999792 | 54996502 | ID=Msa0556720;Name=Msa0556720 |
| chr4_1 | mRNA | 54996502 | 54999792 | 54996502 | ID=Msa0556720-mRNA-1;Parent=Msa0556720;Name=Msa0556720-mRNA-1;_AED=0.11;_eAED=0.11;_QI=222|1|1|1|1|1|9|393|364 |
| chr4_1 | exon | 54996502 | 54996987 | 54996502 | ID=Msa0556720-mRNA-1:exon:16403;Parent=Msa0556720-mRNA-1 |
| chr4_1 | exon | 54997239 | 54997319 | 54997239 | ID=Msa0556720-mRNA-1:exon:16402;Parent=Msa0556720-mRNA-1 |
| chr4_1 | exon | 54997513 | 54997572 | 54997513 | ID=Msa0556720-mRNA-1:exon:16401;Parent=Msa0556720-mRNA-1 |
| chr4_1 | exon | 54997676 | 54997755 | 54997676 | ID=Msa0556720-mRNA-1:exon:16400;Parent=Msa0556720-mRNA-1 |
| chr4_1 | exon | 54997850 | 54997901 | 54997850 | ID=Msa0556720-mRNA-1:exon:16399;Parent=Msa0556720-mRNA-1 |
| chr4_1 | exon | 54997980 | 54998381 | 54997980 | ID=Msa0556720-mRNA-1:exon:16398;Parent=Msa0556720-mRNA-1 |
| chr4_1 | exon | 54998503 | 54998560 | 54998503 | ID=Msa0556720-mRNA-1:exon:16397;Parent=Msa0556720-mRNA-1 |
| chr4_1 | exon | 54999210 | 54999319 | 54999210 | ID=Msa0556720-mRNA-1:exon:16396;Parent=Msa0556720-mRNA-1 |
| chr4_1 | exon | 54999412 | 54999792 | 54999412 | ID=Msa0556720-mRNA-1:exon:16395;Parent=Msa0556720-mRNA-1 |
| chr4_1 | five_prime_UTR | 54999571 | 54999792 | 54999571 | ID=Msa0556720-mRNA-1:five_prime_utr;Parent=Msa0556720-mRNA-1 |
| chr4_1 | CDS | 54999412 | 54999570 | 54999412 | ID=Msa0556720-mRNA-1:cds;Parent=Msa0556720-mRNA-1 |
| chr4_1 | CDS | 54999210 | 54999319 | 54999210 | ID=Msa0556720-mRNA-1:cds;Parent=Msa0556720-mRNA-1 |
| chr4_1 | CDS | 54998503 | 54998560 | 54998503 | ID=Msa0556720-mRNA-1:cds;Parent=Msa0556720-mRNA-1 |
| chr4_1 | CDS | 54997980 | 54998381 | 54997980 | ID=Msa0556720-mRNA-1:cds;Parent=Msa0556720-mRNA-1 |
| chr4_1 | CDS | 54997850 | 54997901 | 54997850 | ID=Msa0556720-mRNA-1:cds;Parent=Msa0556720-mRNA-1 |
| chr4_1 | CDS | 54997676 | 54997755 | 54997676 | ID=Msa0556720-mRNA-1:cds;Parent=Msa0556720-mRNA-1 |
| chr4_1 | CDS | 54997513 | 54997572 | 54997513 | ID=Msa0556720-mRNA-1:cds;Parent=Msa0556720-mRNA-1 |
| chr4_1 | CDS | 54997239 | 54997319 | 54997239 | ID=Msa0556720-mRNA-1:cds;Parent=Msa0556720-mRNA-1 |
| chr4_1 | CDS | 54996895 | 54996987 | 54996895 | ID=Msa0556720-mRNA-1:cds;Parent=Msa0556720-mRNA-1 |
| chr4_1 | three_prime_UTR | 54996502 | 54996894 | 54996502 | ID=Msa0556720-mRNA-1:three_prime_utr;Parent=Msa0556720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
