AlfalfaGEDB | Msa0556720

M. sativa cultivar zhongmu-4 / Msa0556720

KEGG: K01738
GO: -
PFAM: PF00291.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0556720	XP_003608087.1	96.601	353	12	0	12	364	12	364	0.0	695

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0556720	sp\|Q43725\|CYSKM_ARATH	75.915	328	79	0	36	363	102	429	5.68e-179	506

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0556720	G7JNN6	96.601	353	12	0	12	364	12	364	0.0	695

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000370	Msa0556720	0.809369	1.957443e-50	-8.615850e-47
Msa0045810	Msa0556720	0.811562	6.580788e-51	-8.615850e-47
Msa0046200	Msa0556720	0.818676	1.731074e-52	-8.615850e-47
Msa0057860	Msa0556720	0.818085	2.356085e-52	-8.615850e-47
Msa0160580	Msa0556720	0.812274	4.603243e-51	-8.615850e-47
Msa0203880	Msa0556720	0.810993	8.743957e-51	-8.615850e-47
Msa0206370	Msa0556720	0.821309	4.323178e-53	-8.615850e-47
Msa0235080	Msa0556720	0.803082	4.129845e-49	-8.615850e-47
Msa0238110	Msa0556720	0.807768	4.300725e-50	-8.615850e-47
Msa0247050	Msa0556720	0.833371	5.541782e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0556720	MtrunA17_Chr4g0045721	96.601	353	12	0	12	364	12	364	0.0	695
Msa0556720	MtrunA17_Chr4g0045771	88.187	364	34	2	1	364	1	355	0.0	648
Msa0556720	MtrunA17_Chr4g0045781	75.584	385	71	4	1	364	1	383	0.0	550
Msa0556720	MtrunA17_Chr5g0394491	70.126	318	95	0	47	364	8	325	9.57e-153	433
Msa0556720	MtrunA17_Chr1g0205381	70.126	318	95	0	47	364	8	325	4.78e-152	431
Msa0556720	MtrunA17_Chr1g0191041	71.069	318	92	0	43	360	4	321	4.83e-152	431
Msa0556720	MtrunA17_Chr1g0191051	63.057	314	116	0	47	360	7	320	3.84e-142	406
Msa0556720	MtrunA17_Chr7g0254401	57.803	346	136	1	15	360	33	368	1.68e-137	395
Msa0556720	MtrunA17_Chr7g0248021	59.937	317	127	0	46	362	60	376	2.52e-135	390
Msa0556720	MtrunA17_Chr1g0191061	54.775	356	115	2	51	360	25	380	5.45e-124	362

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0556720	AT3G59760.3	75.915	328	79	36	363	102	429	5.78e-180	506
Msa0556720	AT3G59760.1	75.915	328	79	36	363	102	429	6.35e-180	506
Msa0556720	AT2G43750.1	74.545	330	84	34	363	62	391	2.75e-176	495
Msa0556720	AT2G43750.2	74.545	330	84	34	363	62	391	2.75e-176	495
Msa0556720	AT3G59760.2	75.333	300	74	36	335	102	401	1.59e-160	457
Msa0556720	AT4G14880.5	65.931	317	108	47	363	5	321	2.85e-147	419
Msa0556720	AT4G14880.3	65.931	317	108	47	363	5	321	2.85e-147	419
Msa0556720	AT4G14880.4	65.931	317	108	47	363	5	321	2.85e-147	419
Msa0556720	AT4G14880.2	65.931	317	108	47	363	5	321	2.85e-147	419
Msa0556720	AT4G14880.1	65.931	317	108	47	363	5	321	2.85e-147	419

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Find 105 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACAACAGAAACAAAA+CGG	0.496982	4_1:+54996685	None:intergenic
AAACAGGTGGGAATTTCCTC+AGG	0.469541	4_1:-54997303	Msa0556720:intron
AAAGCAAGAGTGCCAACTGA+TGG	0.557553	4_1:+54996742	None:intergenic
AAATGAGGGAAAGCTTATTG+TGG	0.653863	4_1:-54997238	Msa0556720:intron
AAATGCACCTTAGGATTTGA+AGG	0.418592	4_1:+54998110	None:intergenic
AACACTCATAGAAGAATCGG+AGG	0.674248	4_1:+54996781	None:intergenic
AACTGCTCCACTCATAGCCT+TGG	0.451930	4_1:+54998196	None:intergenic
AAGAATCTGTCAAAACTGCA+AGG	0.645155	4_1:-54997540	Msa0556720:CDS
AATATTGAGATCATCGTTGC+TGG	0.427113	4_1:+54999430	None:intergenic
AATCCTTGATGAAGTTATAG+CGG	0.663239	4_1:-54997675	Msa0556720:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAGTAAAAGACTTGACTA+AGG	+	chr4_1:54996740-54996759	None:intergenic	30.0%
TATTGCCAATGATATTACAG+AGG	-	chr4_1:54996861-54996880	Msa0556720:three_prime_UTR	30.0%
TAAGGAATAAATGTTGTTGG+TGG	-	chr4_1:54997426-54997445	Msa0556720:intron	30.0%
CTTTCTAAACTCATTGAAAC+AGG	+	chr4_1:54998006-54998025	None:intergenic	30.0%
TGATAATCCTTCAAATCCTA+AGG	-	chr4_1:54998155-54998174	Msa0556720:CDS	30.0%
TTTGTATCTTTCCATATCTC+TGG	+	chr4_1:54998201-54998220	None:intergenic	30.0%
GAGATATGGAAAGATACAAA+AGG	-	chr4_1:54998201-54998220	Msa0556720:CDS	30.0%
TAAATGGAAATCAACAAGCT+AGG	+	chr4_1:54998346-54998365	None:intergenic	30.0%
ATCAGATAAAAGCTCTTTCA+AGG	+	chr4_1:54998496-54998515	None:intergenic	30.0%
AATCCTTGATGAAGTTATAG+CGG	-	chr4_1:54998597-54998616	Msa0556720:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	54996502	54999792	54996502	ID=Msa0556720;Name=Msa0556720
chr4_1	mRNA	54996502	54999792	54996502	ID=Msa0556720-mRNA-1;Parent=Msa0556720;Name=Msa0556720-mRNA-1;_AED=0.11;_eAED=0.11;_QI=222\|1\|1\|1\|1\|1\|9\|393\|364
chr4_1	exon	54996502	54996987	54996502	ID=Msa0556720-mRNA-1:exon:16403;Parent=Msa0556720-mRNA-1
chr4_1	exon	54997239	54997319	54997239	ID=Msa0556720-mRNA-1:exon:16402;Parent=Msa0556720-mRNA-1
chr4_1	exon	54997513	54997572	54997513	ID=Msa0556720-mRNA-1:exon:16401;Parent=Msa0556720-mRNA-1
chr4_1	exon	54997676	54997755	54997676	ID=Msa0556720-mRNA-1:exon:16400;Parent=Msa0556720-mRNA-1
chr4_1	exon	54997850	54997901	54997850	ID=Msa0556720-mRNA-1:exon:16399;Parent=Msa0556720-mRNA-1
chr4_1	exon	54997980	54998381	54997980	ID=Msa0556720-mRNA-1:exon:16398;Parent=Msa0556720-mRNA-1
chr4_1	exon	54998503	54998560	54998503	ID=Msa0556720-mRNA-1:exon:16397;Parent=Msa0556720-mRNA-1
chr4_1	exon	54999210	54999319	54999210	ID=Msa0556720-mRNA-1:exon:16396;Parent=Msa0556720-mRNA-1
chr4_1	exon	54999412	54999792	54999412	ID=Msa0556720-mRNA-1:exon:16395;Parent=Msa0556720-mRNA-1
chr4_1	five_prime_UTR	54999571	54999792	54999571	ID=Msa0556720-mRNA-1:five_prime_utr;Parent=Msa0556720-mRNA-1
chr4_1	CDS	54999412	54999570	54999412	ID=Msa0556720-mRNA-1:cds;Parent=Msa0556720-mRNA-1
chr4_1	CDS	54999210	54999319	54999210	ID=Msa0556720-mRNA-1:cds;Parent=Msa0556720-mRNA-1
chr4_1	CDS	54998503	54998560	54998503	ID=Msa0556720-mRNA-1:cds;Parent=Msa0556720-mRNA-1
chr4_1	CDS	54997980	54998381	54997980	ID=Msa0556720-mRNA-1:cds;Parent=Msa0556720-mRNA-1
chr4_1	CDS	54997850	54997901	54997850	ID=Msa0556720-mRNA-1:cds;Parent=Msa0556720-mRNA-1
chr4_1	CDS	54997676	54997755	54997676	ID=Msa0556720-mRNA-1:cds;Parent=Msa0556720-mRNA-1
chr4_1	CDS	54997513	54997572	54997513	ID=Msa0556720-mRNA-1:cds;Parent=Msa0556720-mRNA-1
chr4_1	CDS	54997239	54997319	54997239	ID=Msa0556720-mRNA-1:cds;Parent=Msa0556720-mRNA-1
chr4_1	CDS	54996895	54996987	54996895	ID=Msa0556720-mRNA-1:cds;Parent=Msa0556720-mRNA-1
chr4_1	three_prime_UTR	54996502	54996894	54996502	ID=Msa0556720-mRNA-1:three_prime_utr;Parent=Msa0556720-mRNA-1

Gene Sequence

>Msa0556720

ATGGTTTCTTCTTCCTTAGTCAAGTCTTTTACTTGTACTTTGCGTGCTCGCCGTATCAGCCACCGTTTCAGCTCAACCAGGATCTTTTCATCTTCCCCTGTCTTTGTCGAATCCCAAACCAGCAACGATGATCTCAATATTGCCAATGATATTACAGAGCTCATAGGAAAAACGCCAATGGTTTACCTGAAGAGTATCACTAAGGGCTCAGTTGCTACTATTGCTGCTAAGCTTGAGCTTATGGAGCCATGTTGTAGTGTCAAAGACAGGATAGGTTATAGCATGATTCTTGATGCAGAGCAGAAAGGACTCATAACACCTGGGAAGAGTATTTTGGTAGAACCTACCGGTGGGAACACAGGAATTGGTCTTGCCTTTATAGCAGCTACTAAAGGTTATAAACTCATTTTGACAATGCCTGTTTCAATGAGTTTAGAAAGAAGAGTTCTTATGAAAGCATTTGGAGCTGAGCTTGTTTTGACCGAATATTCCAAGGCTATGAGTGGAGCAGTTCAAAAAGCTGAAGAAATCGTAAAAAATACACCTAATGCATACATGCTTCAACAATTTGATAATCCTTCAAATCCTAAGGTGCATTTTGAGAACACAGGGCCAGAGATATGGAAAGATACAAAAGGCAAAGTAGACATTTTAGTCTCGGCAATTGGAACCGGTGGAACTCTTTCTGGAGCTGGTAGATTCCTAAAACAACAAAATCCAAAAATAAAGTGCATCGGTGTAGAGCCTCTCGAAAGCAACATACTTTCAGGTGGAAAGCCAAGACCACACATAATTCAGGGTATTGGGGCTGGTTTTGTGCCCAAGAATTTGGATAAAGAAATCCTTGATGAAGTTATAGCGATATCCGGCGAAGAATCTGTCAAAACTGCAAGGCAAATAGCACTCCAGGAAGGCTTGCTGGTGGGAATTTCCTCAGGTTGTGCTGCTACAGCTGCATTGCAGGTTGCTAAGAGACCTGAAAATGAGGGAAAGCTTATTGTGGTTGTATTCCCAAGCTTCGGTGAAAGATATGTGTCTACTTCTCTTTTTCAGGAAGCTCGAGAAGAATGTGAGAAAATGCAACCGGAGCCATGA

Protein sequence

>Msa0556720

MVSSSLVKSFTCTLRARRISHRFSSTRIFSSSPVFVESQTSNDDLNIANDITELIGKTPMVYLKSITKGSVATIAAKLELMEPCCSVKDRIGYSMILDAEQKGLITPGKSILVEPTGGNTGIGLAFIAATKGYKLILTMPVSMSLERRVLMKAFGAELVLTEYSKAMSGAVQKAEEIVKNTPNAYMLQQFDNPSNPKVHFENTGPEIWKDTKGKVDILVSAIGTGGTLSGAGRFLKQQNPKIKCIGVEPLESNILSGGKPRPHIIQGIGAGFVPKNLDKEILDEVIAISGEESVKTARQIALQEGLLVGISSGCAATAALQVAKRPENEGKLIVVVFPSFGERYVSTSLFQEAREECEKMQPEP*