Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694790 | XP_003608087.1 | 88.669 | 353 | 19 | 2 | 12 | 343 | 12 | 364 | 0.0 | 617 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694790 | sp|O81155|CYSKP_SOLTU | 69.419 | 327 | 79 | 2 | 37 | 342 | 59 | 385 | 4.28e-153 | 438 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694790 | G7JNN6 | 88.669 | 353 | 19 | 2 | 12 | 343 | 12 | 364 | 0.0 | 617 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000370 | Msa0694790 | 0.808002 | 3.836199e-50 | -8.615850e-47 |
| Msa0046200 | Msa0694790 | 0.804712 | 1.893420e-49 | -8.615850e-47 |
| Msa0054790 | Msa0694790 | 0.801158 | 1.027503e-48 | -8.615850e-47 |
| Msa0605480 | Msa0694790 | 0.807767 | 4.303698e-50 | -8.615850e-47 |
| Msa0609460 | Msa0694790 | 0.805000 | 1.649020e-49 | -8.615850e-47 |
| Msa0611950 | Msa0694790 | 0.911699 | 4.524711e-83 | -8.615850e-47 |
| Msa0629720 | Msa0694790 | 0.800499 | 1.400874e-48 | -8.615850e-47 |
| Msa0646440 | Msa0694790 | 0.802286 | 6.028841e-49 | -8.615850e-47 |
| Msa0647300 | Msa0694790 | 0.806339 | 8.632702e-50 | -8.615850e-47 |
| Msa0652210 | Msa0694790 | 0.939699 | 8.183711e-100 | -8.615850e-47 |
| Msa0667600 | Msa0694790 | 0.807805 | 4.224134e-50 | -8.615850e-47 |
| Msa0686830 | Msa0694790 | 0.809094 | 2.242628e-50 | -8.615850e-47 |
| Msa0694790 | Msa0775420 | -0.812187 | 4.810253e-51 | -8.615850e-47 |
| Msa0694790 | Msa0798840 | 0.800522 | 1.385472e-48 | -8.615850e-47 |
| Msa0694790 | Msa0812800 | -0.816014 | 6.879552e-52 | -8.615850e-47 |
| Msa0694790 | Msa0853150 | -0.812993 | 3.204876e-51 | -8.615850e-47 |
| Msa0694790 | Msa0896920 | 0.836264 | 1.036134e-56 | -8.615850e-47 |
| Msa0694790 | Msa0913550 | 0.809861 | 1.535200e-50 | -8.615850e-47 |
| Msa0694790 | Msa0932140 | 0.803121 | 4.055577e-49 | -8.615850e-47 |
| Msa0694790 | Msa0946010 | 0.802794 | 4.737015e-49 | -8.615850e-47 |
| Msa0694790 | Msa0962290 | 0.812895 | 3.366930e-51 | -8.615850e-47 |
| Msa0694790 | Msa0968180 | 0.802192 | 6.303191e-49 | -8.615850e-47 |
| Msa0694790 | Msa0970270 | 0.810477 | 1.130698e-50 | -8.615850e-47 |
| Msa0694790 | Msa0996980 | 0.828487 | 8.750603e-55 | -8.615850e-47 |
| Msa0694790 | Msa1024480 | 0.808007 | 3.826103e-50 | -8.615850e-47 |
| Msa0694790 | Msa1061670 | 0.802500 | 5.448193e-49 | -8.615850e-47 |
| Msa0694790 | Msa1064940 | 0.806265 | 8.946536e-50 | -8.615850e-47 |
| Msa0694790 | Msa1079820 | 0.809107 | 2.227884e-50 | -8.615850e-47 |
| Msa0694790 | Msa1106680 | 0.811462 | 6.916205e-51 | -8.615850e-47 |
| Msa0694790 | Msa1107330 | 0.806672 | 7.342517e-50 | -8.615850e-47 |
| Msa0694790 | Msa1136050 | 0.802842 | 4.631095e-49 | -8.615850e-47 |
| Msa0694790 | Msa1146980 | 0.801046 | 1.083205e-48 | -8.615850e-47 |
| Msa0694790 | Msa1147010 | 0.808855 | 2.522539e-50 | -8.615850e-47 |
| Msa0694790 | Msa1152310 | 0.826052 | 3.351255e-54 | -8.615850e-47 |
| Msa0694790 | Msa1165460 | 0.817550 | 3.112012e-52 | -8.615850e-47 |
| Msa0694790 | Msa1191350 | 0.808680 | 2.749150e-50 | -8.615850e-47 |
| Msa0694790 | Msa1238250 | 0.811895 | 5.570009e-51 | -8.615850e-47 |
| Msa0694790 | Msa1257200 | 0.804977 | 1.667215e-49 | -8.615850e-47 |
| Msa0694790 | Msa1263110 | 0.804406 | 2.193611e-49 | -8.615850e-47 |
| Msa0694790 | Msa1284020 | 0.828951 | 6.755123e-55 | -8.615850e-47 |
| Msa0694790 | Msa1300590 | 0.801352 | 9.377512e-49 | -8.615850e-47 |
| Msa0694790 | Msa1314050 | 0.819330 | 1.229386e-52 | -8.615850e-47 |
| Msa0694790 | Msa1319030 | 0.803749 | 3.004082e-49 | -8.615850e-47 |
| Msa0694790 | Msa1322500 | 0.800600 | 1.335612e-48 | -8.615850e-47 |
| Msa0694790 | Msa1357840 | 0.804420 | 2.179068e-49 | -8.615850e-47 |
| Msa0694790 | Msa1359590 | 0.811973 | 5.354797e-51 | -8.615850e-47 |
| Msa0694790 | Msa1381010 | 0.800908 | 1.155867e-48 | -8.615850e-47 |
| Msa0694790 | Msa1403660 | 0.808838 | 2.544143e-50 | -8.615850e-47 |
| Msa0694790 | Msa1407810 | 0.807822 | 4.188838e-50 | -8.615850e-47 |
| Msa0694790 | Msa1409600 | 0.849893 | 2.413649e-60 | -8.615850e-47 |
| Msa0694790 | Msa1437780 | 0.806679 | 7.318075e-50 | -8.615850e-47 |
| Msa0160580 | Msa0694790 | 0.811972 | 5.356583e-51 | -8.615850e-47 |
| Msa0238110 | Msa0694790 | 0.822866 | 1.883425e-53 | -8.615850e-47 |
| Msa0380110 | Msa0694790 | 0.801156 | 1.028322e-48 | -8.615850e-47 |
| Msa0429450 | Msa0694790 | 0.801946 | 7.081825e-49 | -8.615850e-47 |
| Msa0436600 | Msa0694790 | -0.806542 | 7.818993e-50 | -8.615850e-47 |
| Msa0436610 | Msa0694790 | -0.800229 | 1.589687e-48 | -8.615850e-47 |
| Msa0472390 | Msa0694790 | 0.801798 | 7.597398e-49 | -8.615850e-47 |
| Msa0247050 | Msa0694790 | 0.811385 | 7.188145e-51 | -8.615850e-47 |
| Msa0248320 | Msa0694790 | 0.811086 | 8.348824e-51 | -8.615850e-47 |
| Msa0333770 | Msa0694790 | 0.817673 | 2.919458e-52 | -8.615850e-47 |
| Msa0354540 | Msa0694790 | 0.808881 | 2.490651e-50 | -8.615850e-47 |
| Msa0354550 | Msa0694790 | 0.803630 | 3.181363e-49 | -8.615850e-47 |
| Msa0356240 | Msa0694790 | 0.801673 | 8.056990e-49 | -8.615850e-47 |
| Msa0496060 | Msa0694790 | 0.804283 | 2.326646e-49 | -8.615850e-47 |
| Msa0501080 | Msa0694790 | 0.811693 | 6.162949e-51 | -8.615850e-47 |
| Msa0523550 | Msa0694790 | 0.801526 | 8.638402e-49 | -8.615850e-47 |
| Msa0531030 | Msa0694790 | 0.803975 | 2.697078e-49 | -8.615850e-47 |
| Msa0532660 | Msa0694790 | 0.805612 | 1.227532e-49 | -8.615850e-47 |
| Msa0549970 | Msa0694790 | 0.816313 | 5.896710e-52 | -8.615850e-47 |
| Msa0556720 | Msa0694790 | 0.895841 | 6.532014e-76 | -8.615850e-47 |
| Msa0567330 | Msa0694790 | 0.815892 | 7.323047e-52 | -8.615850e-47 |
| Msa0567570 | Msa0694790 | 0.805789 | 1.126710e-49 | -8.615850e-47 |
| Msa0576320 | Msa0694790 | 0.810312 | 1.227020e-50 | -8.615850e-47 |
| Msa0587870 | Msa0694790 | 0.810094 | 1.367473e-50 | -8.615850e-47 |
| Msa0591490 | Msa0694790 | 0.821219 | 4.536404e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694790 | MtrunA17_Chr4g0045721 | 88.669 | 353 | 19 | 2 | 12 | 343 | 12 | 364 | 0.0 | 617 |
| Msa0694790 | MtrunA17_Chr4g0045771 | 81.044 | 364 | 39 | 4 | 1 | 343 | 1 | 355 | 0.0 | 573 |
| Msa0694790 | MtrunA17_Chr4g0045781 | 69.870 | 385 | 72 | 7 | 1 | 343 | 1 | 383 | 1.84e-170 | 479 |
| Msa0694790 | MtrunA17_Chr5g0394491 | 64.465 | 318 | 92 | 2 | 47 | 343 | 8 | 325 | 3.66e-128 | 369 |
| Msa0694790 | MtrunA17_Chr1g0205381 | 64.465 | 318 | 92 | 2 | 47 | 343 | 8 | 325 | 2.24e-127 | 367 |
| Msa0694790 | MtrunA17_Chr1g0191041 | 65.409 | 318 | 89 | 2 | 43 | 339 | 4 | 321 | 2.24e-127 | 367 |
| Msa0694790 | MtrunA17_Chr1g0191051 | 58.280 | 314 | 110 | 2 | 47 | 339 | 7 | 320 | 1.04e-120 | 350 |
| Msa0694790 | MtrunA17_Chr7g0254401 | 52.991 | 351 | 131 | 4 | 10 | 339 | 31 | 368 | 2.96e-115 | 338 |
| Msa0694790 | MtrunA17_Chr7g0248021 | 53.943 | 317 | 125 | 2 | 46 | 341 | 60 | 376 | 4.82e-111 | 328 |
| Msa0694790 | MtrunA17_Chr1g0191061 | 50.281 | 356 | 110 | 3 | 51 | 339 | 25 | 380 | 8.52e-104 | 310 |
| Msa0694790 | MtrunA17_Chr1g0191071 | 50.562 | 267 | 104 | 4 | 95 | 339 | 1 | 261 | 1.32e-70 | 221 |
| Msa0694790 | MtrunA17_Chr5g0446431 | 34.545 | 165 | 90 | 3 | 178 | 325 | 235 | 398 | 1.15e-21 | 95.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694790 | AT3G59760.3 | 67.049 | 349 | 92 | 3 | 17 | 342 | 81 | 429 | 1.41e-153 | 438 |
| Msa0694790 | AT3G59760.1 | 67.049 | 349 | 92 | 3 | 17 | 342 | 81 | 429 | 1.63e-153 | 438 |
| Msa0694790 | AT2G43750.1 | 70.093 | 321 | 75 | 2 | 43 | 342 | 71 | 391 | 6.36e-151 | 430 |
| Msa0694790 | AT2G43750.2 | 70.093 | 321 | 75 | 2 | 43 | 342 | 71 | 391 | 6.36e-151 | 430 |
| Msa0694790 | AT3G59760.2 | 65.732 | 321 | 87 | 3 | 17 | 314 | 81 | 401 | 4.41e-134 | 389 |
| Msa0694790 | AT4G14880.5 | 60.252 | 317 | 105 | 2 | 47 | 342 | 5 | 321 | 3.02e-122 | 355 |
| Msa0694790 | AT4G14880.3 | 60.252 | 317 | 105 | 2 | 47 | 342 | 5 | 321 | 3.02e-122 | 355 |
| Msa0694790 | AT4G14880.4 | 60.252 | 317 | 105 | 2 | 47 | 342 | 5 | 321 | 3.02e-122 | 355 |
| Msa0694790 | AT4G14880.2 | 60.252 | 317 | 105 | 2 | 47 | 342 | 5 | 321 | 3.02e-122 | 355 |
| Msa0694790 | AT4G14880.1 | 60.252 | 317 | 105 | 2 | 47 | 342 | 5 | 321 | 3.02e-122 | 355 |
| Msa0694790 | AT3G04940.1 | 59.748 | 318 | 107 | 2 | 43 | 339 | 4 | 321 | 1.75e-119 | 348 |
| Msa0694790 | AT3G04940.2 | 59.748 | 318 | 107 | 2 | 43 | 339 | 4 | 321 | 1.75e-119 | 348 |
| Msa0694790 | AT5G28020.2 | 59.190 | 321 | 110 | 2 | 43 | 342 | 3 | 323 | 9.07e-117 | 341 |
| Msa0694790 | AT5G28020.4 | 59.190 | 321 | 110 | 2 | 43 | 342 | 3 | 323 | 9.07e-117 | 341 |
| Msa0694790 | AT5G28020.1 | 59.190 | 321 | 110 | 2 | 43 | 342 | 3 | 323 | 9.07e-117 | 341 |
| Msa0694790 | AT5G28020.3 | 59.190 | 321 | 110 | 2 | 43 | 342 | 3 | 323 | 9.07e-117 | 341 |
| Msa0694790 | AT5G28020.6 | 59.190 | 321 | 110 | 2 | 43 | 342 | 3 | 323 | 9.07e-117 | 341 |
| Msa0694790 | AT5G28030.1 | 58.567 | 321 | 112 | 2 | 43 | 342 | 3 | 323 | 1.29e-116 | 340 |
| Msa0694790 | AT5G28030.4 | 58.567 | 321 | 112 | 2 | 43 | 342 | 3 | 323 | 1.29e-116 | 340 |
| Msa0694790 | AT5G28030.5 | 58.567 | 321 | 112 | 2 | 43 | 342 | 3 | 323 | 1.29e-116 | 340 |
| Msa0694790 | AT5G28030.2 | 58.567 | 321 | 112 | 2 | 43 | 342 | 3 | 323 | 1.29e-116 | 340 |
| Msa0694790 | AT3G61440.1 | 49.861 | 359 | 147 | 6 | 14 | 341 | 8 | 364 | 3.61e-107 | 318 |
| Msa0694790 | AT3G03630.1 | 53.125 | 320 | 119 | 3 | 42 | 340 | 94 | 403 | 1.61e-100 | 302 |
| Msa0694790 | AT3G22460.1 | 57.037 | 270 | 75 | 3 | 95 | 343 | 1 | 250 | 6.70e-94 | 280 |
| Msa0694790 | AT3G61440.2 | 53.358 | 268 | 104 | 2 | 95 | 341 | 1 | 268 | 9.56e-90 | 270 |
| Msa0694790 | AT5G28030.3 | 57.490 | 247 | 84 | 2 | 43 | 268 | 3 | 249 | 2.37e-86 | 261 |
| Msa0694790 | AT3G61440.3 | 53.719 | 242 | 92 | 1 | 120 | 341 | 2 | 243 | 2.53e-83 | 253 |
| Msa0694790 | AT3G61440.4 | 47.869 | 305 | 130 | 6 | 14 | 289 | 8 | 312 | 4.50e-82 | 253 |
| Msa0694790 | AT5G28020.5 | 55.983 | 234 | 83 | 1 | 126 | 339 | 1 | 234 | 3.04e-76 | 234 |
| Msa0694790 | AT3G22460.2 | 59.669 | 181 | 52 | 2 | 47 | 206 | 8 | 188 | 1.02e-67 | 211 |
| Msa0694790 | AT1G55880.1 | 26.158 | 367 | 192 | 7 | 37 | 325 | 30 | 395 | 1.36e-30 | 120 |
| Msa0694790 | AT1G55880.2 | 25.392 | 319 | 160 | 6 | 37 | 277 | 30 | 348 | 4.63e-25 | 104 |
Find 107 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAACCGGTGGAACTCTTTC+TGG | 0.174287 | 4_4:-64151977 | Msa0694790:CDS |
| TGCTGCTACAGCTGCATTGC+AGG | 0.226091 | 4_4:-64151235 | Msa0694790:CDS |
| CACTAACCAGCAAGCCTTCC+TGG | 0.248330 | 4_4:+64151464 | None:intergenic |
| CACATTCTTCTCGAGCTTCC+TGG | 0.248992 | 4_4:+64150878 | None:intergenic |
| CTCGAAAGCAACATACTTTC+AGG | 0.252788 | 4_4:-64151818 | Msa0694790:CDS |
| TGCTGCAAAGCTTGAGCTTA+TGG | 0.262645 | 4_4:-64153186 | Msa0694790:CDS |
| GATTTCTTTATCCAAATTCT+TGG | 0.286384 | 4_4:+64151651 | None:intergenic |
| CACACATAATTCAGGGTATT+GGG | 0.300262 | 4_4:-64151687 | Msa0694790:CDS |
| GTATGCACTTCAGAGTATTT+TGG | 0.302707 | 4_4:-64152328 | Msa0694790:intron |
| CACAGGACCACACATAATTC+AGG | 0.307785 | 4_4:-64151695 | Msa0694790:intron |
| CCTTGGGTGGGTTGTCTCCT+AGG | 0.310476 | 4_4:-64150615 | Msa0694790:three_prime_UTR |
| AGAGTTCTTATGAAAGCATT+TGG | 0.314655 | 4_4:-64152202 | Msa0694790:CDS |
| GAGATCATCGTTGCTGGTTT+GGG | 0.333139 | 4_4:+64153389 | None:intergenic |
| CTATGAGTGTTAGCTTTCCT+TGG | 0.338136 | 4_4:-64150729 | Msa0694790:three_prime_UTR |
| ACCTTTAGTAGCTGCTATAA+AGG | 0.342177 | 4_4:+64152270 | None:intergenic |
| CTTTCTAAACTCATTGAAAC+AGG | 0.346381 | 4_4:+64152226 | None:intergenic |
| TTTGTATCTTTCCATATCTC+TGG | 0.353997 | 4_4:+64152031 | None:intergenic |
| TGAGATCATCGTTGCTGGTT+TGG | 0.382543 | 4_4:+64153388 | None:intergenic |
| AGAATACTGGGCCAGAGATA+TGG | 0.384193 | 4_4:-64152042 | Msa0694790:CDS |
| TCTTTGTCCAAGCAAAATAA+TGG | 0.384507 | 4_4:+64150765 | None:intergenic |
| TACGGTGGGAACACAGGAAT+TGG | 0.391141 | 4_4:-64152298 | Msa0694790:CDS |
| GAACGTGTAAAATTGTTTCA+TGG | 0.403579 | 4_4:+64150838 | None:intergenic |
| TTCCTTGGATTTCCATCACT+TGG | 0.404405 | 4_4:-64150714 | Msa0694790:three_prime_UTR |
| AGCCCTTAGTGATACTCTTC+AGG | 0.405705 | 4_4:+64153222 | None:intergenic |
| ACTCATAGCCTTGGAATATT+CGG | 0.408095 | 4_4:+64152162 | None:intergenic |
| TATAAAAGATATTTCAATCA+TGG | 0.409870 | 4_4:-64153713 | Msa0694790:five_prime_UTR |
| AGCACTCCAGGAAGGCTTGC+TGG | 0.419636 | 4_4:-64151470 | Msa0694790:intron |
| AATATTGAGATCATCGTTGC+TGG | 0.427113 | 4_4:+64153383 | None:intergenic |
| ATTTCTTTATCCAAATTCTT+GGG | 0.427230 | 4_4:+64151652 | None:intergenic |
| CATATCTTTCACCGAAGCTT+GGG | 0.435988 | 4_4:+64150917 | None:intergenic |
| GGCACTCTTGCTTTGTATTG+TGG | 0.436042 | 4_4:-64150693 | Msa0694790:three_prime_UTR |
| GTTTGGGATTCGACAAAGGC+AGG | 0.443433 | 4_4:+64153405 | None:intergenic |
| TTAGTCTCGGCAATTGGAAC+CGG | 0.448696 | 4_4:-64151992 | Msa0694790:CDS |
| TCCGACCTCTGTAATATCAT+TGG | 0.450501 | 4_4:+64153359 | None:intergenic |
| AGCTGAAACGGTGGCTGGTA+CGG | 0.450973 | 4_4:+64153451 | None:intergenic |
| AACTGCTCCACTCATAGCCT+TGG | 0.451930 | 4_4:+64152153 | None:intergenic |
| CAGGTTGTATTCCCAAGCTT+CGG | 0.453220 | 4_4:-64150928 | Msa0694790:CDS |
| GCCTTTATAGCAGCTACTAA+AGG | 0.455275 | 4_4:-64152271 | Msa0694790:CDS |
| ACATATCTTTCACCGAAGCT+TGG | 0.458571 | 4_4:+64150916 | None:intergenic |
| CCACACATAATTCAGGGTAT+TGG | 0.460806 | 4_4:-64151688 | Msa0694790:CDS |
| GTAAAATTGTTTCATGGCTC+CGG | 0.463120 | 4_4:+64150844 | None:intergenic |
| GCTAACACTCATAGAAGAAT+CGG | 0.468920 | 4_4:+64150738 | None:intergenic |
| AAACAGGTGGGAATTTCCTC+AGG | 0.469541 | 4_4:-64151261 | Msa0694790:intron |
| TGCTTACATGCACAGCTCAT+AGG | 0.475577 | 4_4:-64153263 | Msa0694790:intron |
| AAGGTGCATTATGAGAATAC+TGG | 0.479612 | 4_4:-64152055 | Msa0694790:CDS |
| GCACGAAATACACGAGATCA+TGG | 0.481442 | 4_4:+64153582 | None:intergenic |
| GATATTATTAAAAGAAGATA+AGG | 0.491700 | 4_4:+64153554 | None:intergenic |
| AAAATACAACAGAAACAAAA+CGG | 0.496982 | 4_4:+64150645 | None:intergenic |
| TGCAAGGCAAATAGCACTCC+AGG | 0.497957 | 4_4:-64151482 | Msa0694790:CDS |
| TATAAATAGAAAAGAGTACA+AGG | 0.500169 | 4_4:+64150501 | None:intergenic |
| TCGACCACTTGTACAAAATA+CGG | 0.506189 | 4_4:+64150793 | None:intergenic |
| AGAATGTGAGAAAATGCAAC+CGG | 0.512076 | 4_4:-64150863 | Msa0694790:CDS |
| AGATCCTGGTTGAGCTGAAA+CGG | 0.512803 | 4_4:+64153439 | None:intergenic |
| GAAGAAGCCATTGTTGCTTG+TGG | 0.514767 | 4_4:+64153513 | None:intergenic |
| TTGGGATTCGACAAAGGCAG+GGG | 0.517966 | 4_4:+64153407 | None:intergenic |
| CAGAAAGGACTCATAACACC+TGG | 0.522023 | 4_4:-64152463 | Msa0694790:CDS |
| ATAATTCAGGGTATTGGGGC+TGG | 0.523924 | 4_4:-64151682 | Msa0694790:CDS |
| ATTAAAATAATAATTAGCTC+TGG | 0.526067 | 4_4:+64153662 | None:intergenic |
| TGCTAAGAGACCTGAAAATG+AGG | 0.527044 | 4_4:-64151211 | Msa0694790:CDS |
| GTCTCGGCAATTGGAACCGG+TGG | 0.532547 | 4_4:-64151989 | Msa0694790:CDS |
| GAGATATGGAAAGATACAAA+AGG | 0.534527 | 4_4:-64152028 | Msa0694790:CDS |
| GGTGGAACTCTTTCTGGAGC+TGG | 0.534617 | 4_4:-64151971 | Msa0694790:CDS |
| CATGTTGCAGTGTCAAAGAC+AGG | 0.537458 | 4_4:-64153160 | Msa0694790:intron |
| TGTTATGAGTCCTTTCTGCT+CGG | 0.547510 | 4_4:+64152468 | None:intergenic |
| AAAGATATTTCAATCATGGA+GGG | 0.551487 | 4_4:-64153709 | Msa0694790:five_prime_UTR |
| AGGGGAAGATGAAAAGATCC+TGG | 0.553418 | 4_4:+64153425 | None:intergenic |
| ACAAGTAAAAGACTTGACTA+AGG | 0.556177 | 4_4:+64153488 | None:intergenic |
| AGCTCCAGAAAGAGTTCCAC+CGG | 0.558578 | 4_4:+64151973 | None:intergenic |
| GGCGACGACAATAACAAAAG+TGG | 0.560281 | 4_4:+64150666 | None:intergenic |
| AAAGCAAGAGTGCCAAGTGA+TGG | 0.563208 | 4_4:+64150702 | None:intergenic |
| AGGTGCATTATGAGAATACT+GGG | 0.564800 | 4_4:-64152054 | Msa0694790:CDS |
| ACAGGACCACACATAATTCA+GGG | 0.566612 | 4_4:-64151694 | Msa0694790:intron |
| TTACCTGAAGAGTATCACTA+AGG | 0.569604 | 4_4:-64153225 | Msa0694790:CDS |
| AATTCCTGTGTTCCCACCGT+AGG | 0.569658 | 4_4:+64152300 | None:intergenic |
| GAATTCTCCACAAGCAACAA+TGG | 0.571120 | 4_4:-64153520 | Msa0694790:exon |
| GGTTGAGCTGAAACGGTGGC+TGG | 0.574406 | 4_4:+64153446 | None:intergenic |
| ATTCTTGATGCCGAGCAGAA+AGG | 0.581925 | 4_4:-64152478 | Msa0694790:CDS |
| TTTGGGATTCGACAAAGGCA+GGG | 0.588345 | 4_4:+64153406 | None:intergenic |
| TTGAAAATGTGTCTAAAACA+TGG | 0.589637 | 4_4:+64150816 | None:intergenic |
| CTACGTATCAATCAGTGCAT+CGG | 0.594890 | 4_4:-64151851 | Msa0694790:intron |
| ATACTCTTCAGGTAAACCAT+TGG | 0.603385 | 4_4:+64153233 | None:intergenic |
| AGAACCTACGGTGGGAACAC+AGG | 0.603543 | 4_4:-64152304 | Msa0694790:CDS |
| AGGACTCATAACACCTGGGA+AGG | 0.604876 | 4_4:-64152458 | Msa0694790:intron |
| GAAAGTATGTTGCTTTCGAG+AGG | 0.608190 | 4_4:+64151821 | None:intergenic |
| ACACATAATTCAGGGTATTG+GGG | 0.608497 | 4_4:-64151686 | Msa0694790:CDS |
| AAAAGATATTTCAATCATGG+AGG | 0.610591 | 4_4:-64153710 | Msa0694790:five_prime_UTR |
| CTGTCTTTGACACTGCAACA+TGG | 0.615946 | 4_4:+64153161 | None:intergenic |
| TCCTGGTTGAGCTGAAACGG+TGG | 0.618636 | 4_4:+64153442 | None:intergenic |
| GCTAAGAGACCTGAAAATGA+GGG | 0.619429 | 4_4:-64151210 | Msa0694790:CDS |
| TACCTGAAGAGTATCACTAA+GGG | 0.627372 | 4_4:-64153224 | Msa0694790:CDS |
| GAATATTCCAAGGCTATGAG+TGG | 0.632482 | 4_4:-64152160 | Msa0694790:CDS |
| GCTGGTTTGGGATTCGACAA+AGG | 0.632618 | 4_4:+64153401 | None:intergenic |
| AGACCGCTATAACTTCATCA+AGG | 0.636275 | 4_4:+64151629 | None:intergenic |
| GCCACCGTTTCAGCTCAACC+AGG | 0.639745 | 4_4:-64153443 | Msa0694790:CDS |
| TGCCAAGTGATGGAAATCCA+AGG | 0.640604 | 4_4:+64150712 | None:intergenic |
| GTTTCTGTTTGTTTGCAGTG+TGG | 0.642960 | 4_4:-64150549 | Msa0694790:three_prime_UTR |
| CCTAGGAGACAACCCACCCA+AGG | 0.644420 | 4_4:+64150615 | None:intergenic |
| AAGAATCTGTCAAAACTGCA+AGG | 0.645155 | 4_4:-64151498 | Msa0694790:CDS |
| GAAAGCAACATACTTTCAGG+TGG | 0.653711 | 4_4:-64151815 | Msa0694790:CDS |
| AAATGAGGGAAAGCTTATTG+TGG | 0.653863 | 4_4:-64151196 | Msa0694790:intron |
| AGCTGTAGCAGCACAACCTG+AGG | 0.655976 | 4_4:+64151245 | None:intergenic |
| AATCCTTGATGAAGTTATAG+CGG | 0.663239 | 4_4:-64151632 | Msa0694790:intron |
| AGGCAAATAGCACTCCAGGA+AGG | 0.669487 | 4_4:-64151478 | Msa0694790:CDS |
| AACACTCATAGAAGAATCGG+AGG | 0.674248 | 4_4:+64150741 | None:intergenic |
| CCAATACCCTGAATTATGTG+TGG | 0.679263 | 4_4:+64151688 | None:intergenic |
| AGAAAGGACTCATAACACCT+GGG | 0.699620 | 4_4:-64152462 | Msa0694790:CDS |
| TATTGCCAATGATATTACAG+AGG | 0.723357 | 4_4:-64153364 | Msa0694790:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATTATTAGTATAAAAATA+TGG | + | chr4_4:64151332-64151351 | None:intergenic | 10.0% |
| !! | ATTAATTATGCTTTAATATA+TGG | + | chr4_4:64152812-64152831 | None:intergenic | 10.0% |
| !!! | ATAAGTAATTTTTTTTAATG+CGG | + | chr4_4:64153012-64153031 | None:intergenic | 10.0% |
| !! | TAAAAAAAATTACTTATGTA+AGG | - | chr4_4:64153015-64153034 | Msa0694790:intron | 10.0% |
| !! | ATTAAAATAATAATTAGCTC+TGG | + | chr4_4:64150512-64150531 | None:intergenic | 15.0% |
| !! | GATATTATTAAAAGAAGATA+AGG | + | chr4_4:64150620-64150639 | None:intergenic | 15.0% |
| !!! | TTCTTTCTTTTTAAACATTT+TGG | - | chr4_4:64151067-64151086 | Msa0694790:intron | 15.0% |
| !!! | AATTTAAGGTTTATATTCTA+AGG | + | chr4_4:64151243-64151262 | None:intergenic | 15.0% |
| !! | TAGAATATAAACCTTAAATT+TGG | - | chr4_4:64151243-64151262 | Msa0694790:CDS | 15.0% |
| !! | ATAATAGTAGTAGATAATTT+CGG | - | chr4_4:64151345-64151364 | Msa0694790:intron | 15.0% |
| !! | AACTTATTATATTTCTTACT+TGG | + | chr4_4:64152386-64152405 | None:intergenic | 15.0% |
| !! | TATTAAAGCATAATTAATGA+AGG | - | chr4_4:64152814-64152833 | Msa0694790:intron | 15.0% |
| !! | ATTAAAGCATAATTAATGAA+GGG | - | chr4_4:64152815-64152834 | Msa0694790:intron | 15.0% |
| !! | CAATAAATAAAAAAATTGTG+AGG | + | chr4_4:64153223-64153242 | None:intergenic | 15.0% |
| !!! | ACAATTTTTTTATTTATTGC+AGG | - | chr4_4:64153224-64153243 | Msa0694790:CDS | 15.0% |
| !!! | CTTTTACTATATTTCAATCA+TGG | - | chr4_4:64150536-64150555 | Msa0694790:three_prime_UTR | 20.0% |
| !! | TTTGTTTCATTTCTATTTGT+TGG | - | chr4_4:64151113-64151132 | Msa0694790:intron | 20.0% |
| !! | ATATCAGCTAATTAATTGTA+AGG | + | chr4_4:64151468-64151487 | None:intergenic | 20.0% |
| !!! | TTATTTTATTGTTTCTGCTT+TGG | - | chr4_4:64151644-64151663 | Msa0694790:CDS | 20.0% |
| !!! | TTTTTGGATTTTGTTGTTTT+AGG | + | chr4_4:64152232-64152251 | None:intergenic | 20.0% |
| !! | ACAACAAAATCCAAAAATAA+AGG | - | chr4_4:64152235-64152254 | Msa0694790:CDS | 20.0% |
| !!! | GAATGATTTACCTTTATTTT+TGG | + | chr4_4:64152248-64152267 | None:intergenic | 20.0% |
| !! | GTAGAGAATAAAATGTTAAA+TGG | + | chr4_4:64152304-64152323 | None:intergenic | 20.0% |
| !! | ATTTCTTTATCCAAATTCTT+GGG | + | chr4_4:64152522-64152541 | None:intergenic | 20.0% |
| !! | AAAATACAACAGAAACAAAA+CGG | + | chr4_4:64153529-64153548 | None:intergenic | 20.0% |
| !!! | TTGTATTTTCTTTTTTCCTT+GGG | - | chr4_4:64153540-64153559 | Msa0694790:five_prime_UTR | 20.0% |
| !!! | TATAAATAGAAAAGAGTACA+AGG | + | chr4_4:64153673-64153692 | None:intergenic | 20.0% |
| !!! | AAATGTCTCTTTTTTCTTAA+TGG | + | chr4_4:64153710-64153729 | None:intergenic | 20.0% |
| ! | AAAAGATATTTCAATCATGG+AGG | - | chr4_4:64150461-64150480 | Msa0694790:three_prime_UTR | 25.0% |
| ! | AAAGATATTTCAATCATGGA+GGG | - | chr4_4:64150462-64150481 | Msa0694790:three_prime_UTR | 25.0% |
| ! | ATTTCGGCTAAATAATTGTA+AGG | - | chr4_4:64151361-64151380 | Msa0694790:intron | 25.0% |
| ! | TTGTAAGGAATAAATGTTGT+TGG | - | chr4_4:64151376-64151395 | Msa0694790:intron | 25.0% |
| ! | TGGTATCAATGATGTTATAT+CGG | - | chr4_4:64151399-64151418 | Msa0694790:intron | 25.0% |
| ! | CACTTATATGCAAATTTATG+TGG | + | chr4_4:64151602-64151621 | None:intergenic | 25.0% |
| ! | GATTGTTAATTACTTGTTTC+TGG | - | chr4_4:64151821-64151840 | Msa0694790:CDS | 25.0% |
| ! | ATCAGATAAAAGCTCTTTAA+AGG | + | chr4_4:64152438-64152457 | None:intergenic | 25.0% |
| ! | GATTTCTTTATCCAAATTCT+TGG | + | chr4_4:64152523-64152542 | None:intergenic | 25.0% |
| ! | GATTAATCAGAATAATGCAT+TGG | + | chr4_4:64152600-64152619 | None:intergenic | 25.0% |
| ! | TTTGTATCTTGATTAACTGT+TGG | - | chr4_4:64152848-64152867 | Msa0694790:intron | 25.0% |
| ! | TTTACCTAAATTCTTACCAT+TGG | - | chr4_4:64152886-64152905 | Msa0694790:intron | 25.0% |
| !! | TTTTCCAATGGTAAGAATTT+AGG | + | chr4_4:64152893-64152912 | None:intergenic | 25.0% |
| !!! | TCTTTTTTATATACCATCCA+AGG | + | chr4_4:64153056-64153075 | None:intergenic | 25.0% |
| ! | ATAACAGAATATGATCAGAT+TGG | + | chr4_4:64153105-64153124 | None:intergenic | 25.0% |
| !! | TTGAAAATGTGTCTAAAACA+TGG | + | chr4_4:64153358-64153377 | None:intergenic | 25.0% |
| !! | GTTGTATTTTCTTTTTTCCT+TGG | - | chr4_4:64153539-64153558 | Msa0694790:five_prime_UTR | 25.0% |
| !!! | AATTGTTTTTGTTGCTACTT+TGG | - | chr4_4:64153579-64153598 | Msa0694790:five_prime_UTR | 25.0% |
| ACAAGTAAAAGACTTGACTA+AGG | + | chr4_4:64150686-64150705 | None:intergenic | 30.0% | |
| TATTGCCAATGATATTACAG+AGG | - | chr4_4:64150807-64150826 | Msa0694790:three_prime_UTR | 30.0% | |
| ! | TAGTCAATGGGTGATATTTT+TGG | - | chr4_4:64151143-64151162 | Msa0694790:intron | 30.0% |
| TAAGGAATAAATGTTGTTGG+TGG | - | chr4_4:64151379-64151398 | Msa0694790:intron | 30.0% | |
| CTTTCTAAACTCATTGAAAC+AGG | + | chr4_4:64151948-64151967 | None:intergenic | 30.0% | |
| !! | AGAGTTCTTATGAAAGCATT+TGG | - | chr4_4:64151969-64151988 | Msa0694790:CDS | 30.0% |
| TGATAATCCTTCAAATCCTA+AGG | - | chr4_4:64152097-64152116 | Msa0694790:intron | 30.0% | |
| TTTGTATCTTTCCATATCTC+TGG | + | chr4_4:64152143-64152162 | None:intergenic | 30.0% | |
| GAGATATGGAAAGATACAAA+AGG | - | chr4_4:64152143-64152162 | Msa0694790:CDS | 30.0% | |
| !! | CAAAGTAGACATTTTAGTCT+CGG | - | chr4_4:64152166-64152185 | Msa0694790:CDS | 30.0% |
| TAAATGGAAATCAACAAGCT+AGG | + | chr4_4:64152288-64152307 | None:intergenic | 30.0% | |
| AGGAAATAACATATCAGACT+TGG | + | chr4_4:64152418-64152437 | None:intergenic | 30.0% | |
| !!! | ATTTTTTCCTGCTAAATCAC+AGG | - | chr4_4:64152459-64152478 | Msa0694790:CDS | 30.0% |
| AATCCTTGATGAAGTTATAG+CGG | - | chr4_4:64152539-64152558 | Msa0694790:intron | 30.0% | |
| AATTCTTACCATTGGAAAAC+AGG | - | chr4_4:64152894-64152913 | Msa0694790:intron | 30.0% | |
| TTTAATTAATCCACCTTGGA+TGG | - | chr4_4:64153040-64153059 | Msa0694790:intron | 30.0% | |
| ! | TTTTTATATACCATCCAAGG+TGG | + | chr4_4:64153053-64153072 | None:intergenic | 30.0% |
| GAACGTGTAAAATTGTTTCA+TGG | + | chr4_4:64153336-64153355 | None:intergenic | 30.0% | |
| TCTTTGTCCAAGCAAAATAA+TGG | + | chr4_4:64153409-64153428 | None:intergenic | 30.0% | |
| ! | TATTTTCTTTTTTCCTTGGG+TGG | - | chr4_4:64153543-64153562 | Msa0694790:five_prime_UTR | 30.0% |
| ! | ATTTTCTTTTTTCCTTGGGT+GGG | - | chr4_4:64153544-64153563 | Msa0694790:five_prime_UTR | 30.0% |
| TAGCAACAAAAACAATTCCT+AGG | + | chr4_4:64153576-64153595 | None:intergenic | 30.0% | |
| AATATTGAGATCATCGTTGC+TGG | + | chr4_4:64150791-64150810 | None:intergenic | 35.0% | |
| ATACTCTTCAGGTAAACCAT+TGG | + | chr4_4:64150941-64150960 | None:intergenic | 35.0% | |
| !! | TTACCTGAAGAGTATCACTA+AGG | - | chr4_4:64150946-64150965 | Msa0694790:intron | 35.0% |
| !! | TACCTGAAGAGTATCACTAA+GGG | - | chr4_4:64150947-64150966 | Msa0694790:intron | 35.0% |
| ! | TGTTGGTTAGTGTTAGTCAA+TGG | - | chr4_4:64151130-64151149 | Msa0694790:intron | 35.0% |
| GTTGGTTAGTGTTAGTCAAT+GGG | - | chr4_4:64151131-64151150 | Msa0694790:intron | 35.0% | |
| GATAAGACGGTCCAAATTTA+AGG | + | chr4_4:64151257-64151276 | None:intergenic | 35.0% | |
| TTTCTTGCAATTGACAACAC+TGG | - | chr4_4:64151559-64151578 | Msa0694790:intron | 35.0% | |
| !! | GTATGCACTTCAGAGTATTT+TGG | - | chr4_4:64151843-64151862 | Msa0694790:intron | 35.0% |
| !!! | GAGTATTTTGGTAGAACCTA+CGG | - | chr4_4:64151855-64151874 | Msa0694790:intron | 35.0% |
| ACCTTTAGTAGCTGCTATAA+AGG | + | chr4_4:64151904-64151923 | None:intergenic | 35.0% | |
| !!! | TGTTTTGACCGAATATTCCA+AGG | - | chr4_4:64152001-64152020 | Msa0694790:CDS | 35.0% |
| ! | ACTCATAGCCTTGGAATATT+CGG | + | chr4_4:64152012-64152031 | None:intergenic | 35.0% |
| TGTTGAAGCATGTATGCATT+AGG | + | chr4_4:64152074-64152093 | None:intergenic | 35.0% | |
| TAATGCACCTTAGGATTTGA+AGG | + | chr4_4:64152107-64152126 | None:intergenic | 35.0% | |
| GTATTCTCATAATGCACCTT+AGG | + | chr4_4:64152116-64152135 | None:intergenic | 35.0% | |
| AAGGTGCATTATGAGAATAC+TGG | - | chr4_4:64152116-64152135 | Msa0694790:intron | 35.0% | |
| AGGTGCATTATGAGAATACT+GGG | - | chr4_4:64152117-64152136 | Msa0694790:intron | 35.0% | |
| ! | CACACATAATTCAGGGTATT+GGG | - | chr4_4:64152484-64152503 | Msa0694790:CDS | 35.0% |
| !! | ACACATAATTCAGGGTATTG+GGG | - | chr4_4:64152485-64152504 | Msa0694790:CDS | 35.0% |
| AAGAATCTGTCAAAACTGCA+AGG | - | chr4_4:64152673-64152692 | Msa0694790:intron | 35.0% | |
| ! | ATAAGCTTTCCCTCATTTTC+AGG | + | chr4_4:64152973-64152992 | None:intergenic | 35.0% |
| AAATGAGGGAAAGCTTATTG+TGG | - | chr4_4:64152975-64152994 | Msa0694790:intron | 35.0% | |
| GGAGTTTAATTAATCCACCT+TGG | - | chr4_4:64153036-64153055 | Msa0694790:intron | 35.0% | |
| ! | ATATGATCAGATTGGCTGAA+GGG | + | chr4_4:64153097-64153116 | None:intergenic | 35.0% |
| ! | AATATGATCAGATTGGCTGA+AGG | + | chr4_4:64153098-64153117 | None:intergenic | 35.0% |
| AGAATGTGAGAAAATGCAAC+CGG | - | chr4_4:64153308-64153327 | Msa0694790:intron | 35.0% | |
| GTAAAATTGTTTCATGGCTC+CGG | + | chr4_4:64153330-64153349 | None:intergenic | 35.0% | |
| ! | TCAACCGTATTTTGTACAAG+TGG | - | chr4_4:64153374-64153393 | Msa0694790:CDS | 35.0% |
| TCGACCACTTGTACAAAATA+CGG | + | chr4_4:64153381-64153400 | None:intergenic | 35.0% | |
| ! | TATTTTGTACAAGTGGTCGA+TGG | - | chr4_4:64153381-64153400 | Msa0694790:CDS | 35.0% |
| !! | GATGGAACCATTATTTTGCT+TGG | - | chr4_4:64153399-64153418 | Msa0694790:CDS | 35.0% |
| GCTAACACTCATAGAAGAAT+CGG | + | chr4_4:64153436-64153455 | None:intergenic | 35.0% | |
| !!! | TGTTTTTGTTGCTACTTTGG+CGG | - | chr4_4:64153582-64153601 | Msa0694790:five_prime_UTR | 35.0% |
| GAATTCTCCACAAGCAACAA+TGG | - | chr4_4:64150651-64150670 | Msa0694790:three_prime_UTR | 40.0% | |
| GCCAATGATATTACAGAGGT+CGG | - | chr4_4:64150811-64150830 | Msa0694790:three_prime_UTR | 40.0% | |
| TCCGACCTCTGTAATATCAT+TGG | + | chr4_4:64150815-64150834 | None:intergenic | 40.0% | |
| ACCGTCTTATCTTAACCAGA+CGG | - | chr4_4:64151266-64151285 | Msa0694790:intron | 40.0% | |
| ACCGTCTGGTTAAGATAAGA+CGG | + | chr4_4:64151270-64151289 | None:intergenic | 40.0% | |
| GCTATAGCGTTATAGCATAG+CGG | - | chr4_4:64151421-64151440 | Msa0694790:intron | 40.0% | |
| TACGCTACAATGCTAAGCAA+TGG | + | chr4_4:64151495-64151514 | None:intergenic | 40.0% | |
| TTGCAATTGACAACACTGGT+TGG | - | chr4_4:64151563-64151582 | Msa0694790:intron | 40.0% | |
| ATGCTATAACCTATCCTGCA+AGG | + | chr4_4:64151672-64151691 | None:intergenic | 40.0% | |
| TGTTATGAGTCCTTTCTGCT+CGG | + | chr4_4:64151706-64151725 | None:intergenic | 40.0% | |
| AGAAAGGACTCATAACACCT+GGG | - | chr4_4:64151709-64151728 | Msa0694790:intron | 40.0% | |
| ! | CTTTCGTATTTTACCTTCCC+AGG | + | chr4_4:64151729-64151748 | None:intergenic | 40.0% |
| !!! | TATTTTGGTAGAACCTACGG+TGG | - | chr4_4:64151858-64151877 | Msa0694790:intron | 40.0% |
| !! | ATTTTGGTAGAACCTACGGT+GGG | - | chr4_4:64151859-64151878 | Msa0694790:intron | 40.0% |
| GCCTTTATAGCAGCTACTAA+AGG | - | chr4_4:64151900-64151919 | Msa0694790:intron | 40.0% | |
| GAATATTCCAAGGCTATGAG+TGG | - | chr4_4:64152011-64152030 | Msa0694790:CDS | 40.0% | |
| !! | GACATTTTAGTCTCGGCAAT+TGG | - | chr4_4:64152173-64152192 | Msa0694790:CDS | 40.0% |
| CTACGTATCAATCAGTGCAT+CGG | - | chr4_4:64152320-64152339 | Msa0694790:intron | 40.0% | |
| !! | GAAAGTATGTTGCTTTCGAG+AGG | + | chr4_4:64152353-64152372 | None:intergenic | 40.0% |
| CTCGAAAGCAACATACTTTC+AGG | - | chr4_4:64152353-64152372 | Msa0694790:intron | 40.0% | |
| GAAAGCAACATACTTTCAGG+TGG | - | chr4_4:64152356-64152375 | Msa0694790:intron | 40.0% | |
| ACAGGACCACACATAATTCA+GGG | - | chr4_4:64152477-64152496 | Msa0694790:CDS | 40.0% | |
| CCAATACCCTGAATTATGTG+TGG | + | chr4_4:64152486-64152505 | None:intergenic | 40.0% | |
| CCACACATAATTCAGGGTAT+TGG | - | chr4_4:64152483-64152502 | Msa0694790:CDS | 40.0% | |
| !!! | TGGTTTTGTGCCCAAGAATT+TGG | - | chr4_4:64152509-64152528 | Msa0694790:intron | 40.0% |
| AGACCGCTATAACTTCATCA+AGG | + | chr4_4:64152545-64152564 | None:intergenic | 40.0% | |
| ! | CTTTTCTGATTGTCTGCATG+TGG | - | chr4_4:64152628-64152647 | Msa0694790:intron | 40.0% |
| ! | TGGCAACTTTTGCAGATATC+CGG | - | chr4_4:64152648-64152667 | Msa0694790:intron | 40.0% |
| !! | AGTTTTGACAGATTCTTCGC+CGG | + | chr4_4:64152670-64152689 | None:intergenic | 40.0% |
| TCTTACCATTGGAAAACAGG+TGG | - | chr4_4:64152897-64152916 | Msa0694790:intron | 40.0% | |
| CTTACCATTGGAAAACAGGT+GGG | - | chr4_4:64152898-64152917 | Msa0694790:intron | 40.0% | |
| ! | AATTCCCACCTGTTTTCCAA+TGG | + | chr4_4:64152905-64152924 | None:intergenic | 40.0% |
| TGCTAAGAGACCTGAAAATG+AGG | - | chr4_4:64152960-64152979 | Msa0694790:intron | 40.0% | |
| GCTAAGAGACCTGAAAATGA+GGG | - | chr4_4:64152961-64152980 | Msa0694790:intron | 40.0% | |
| CATATCTTTCACCGAAGCTT+GGG | + | chr4_4:64153257-64153276 | None:intergenic | 40.0% | |
| ACATATCTTTCACCGAAGCT+TGG | + | chr4_4:64153258-64153277 | None:intergenic | 40.0% | |
| ! | TGTGTCTACTTCTCTTTTCC+AGG | - | chr4_4:64153275-64153294 | Msa0694790:intron | 40.0% |
| AACACTCATAGAAGAATCGG+AGG | + | chr4_4:64153433-64153452 | None:intergenic | 40.0% | |
| !! | CTATGAGTGTTAGCTTTCCT+TGG | - | chr4_4:64153442-64153461 | Msa0694790:CDS | 40.0% |
| TTCCTTGGATTTCCATCACT+TGG | - | chr4_4:64153457-64153476 | Msa0694790:CDS | 40.0% | |
| GTTTCTGTTTGTTTGCAGTG+TGG | - | chr4_4:64153622-64153641 | Msa0694790:five_prime_UTR | 40.0% | |
| GCACGAAATACACGAGATCA+TGG | + | chr4_4:64150592-64150611 | None:intergenic | 45.0% | |
| ! | GAAGAAGCCATTGTTGCTTG+TGG | + | chr4_4:64150661-64150680 | None:intergenic | 45.0% |
| AGATCCTGGTTGAGCTGAAA+CGG | + | chr4_4:64150735-64150754 | None:intergenic | 45.0% | |
| AGGGGAAGATGAAAAGATCC+TGG | + | chr4_4:64150749-64150768 | None:intergenic | 45.0% | |
| ! | TTTGGGATTCGACAAAGGCA+GGG | + | chr4_4:64150768-64150787 | None:intergenic | 45.0% |
| !! | GAGATCATCGTTGCTGGTTT+GGG | + | chr4_4:64150785-64150804 | None:intergenic | 45.0% |
| ! | TGAGATCATCGTTGCTGGTT+TGG | + | chr4_4:64150786-64150805 | None:intergenic | 45.0% |
| TGCTTACATGCACAGCTCAT+AGG | - | chr4_4:64150908-64150927 | Msa0694790:CDS | 45.0% | |
| GCTCATAGGAAAAACGCCAA+TGG | - | chr4_4:64150922-64150941 | Msa0694790:CDS | 45.0% | |
| AGCCCTTAGTGATACTCTTC+AGG | + | chr4_4:64150952-64150971 | None:intergenic | 45.0% | |
| TGCTGCAAAGCTTGAGCTTA+TGG | - | chr4_4:64150985-64151004 | Msa0694790:intron | 45.0% | |
| CTGTCTTTGACACTGCAACA+TGG | + | chr4_4:64151013-64151032 | None:intergenic | 45.0% | |
| CATGTTGCAGTGTCAAAGAC+AGG | - | chr4_4:64151011-64151030 | Msa0694790:intron | 45.0% | |
| TTGCAGTGTCAAAGACAGGT+AGG | - | chr4_4:64151015-64151034 | Msa0694790:intron | 45.0% | |
| !!! | GGTGATATTTTTGGATCCCG+AGG | - | chr4_4:64151152-64151171 | Msa0694790:intron | 45.0% |
| TATGCATGACTGCATGTCCT+CGG | + | chr4_4:64151172-64151191 | None:intergenic | 45.0% | |
| ! | TTTCTGCTTTGGTTCCTTGC+AGG | - | chr4_4:64151655-64151674 | Msa0694790:CDS | 45.0% |
| ATTCTTGATGCCGAGCAGAA+AGG | - | chr4_4:64151693-64151712 | Msa0694790:CDS | 45.0% | |
| CAGAAAGGACTCATAACACC+TGG | - | chr4_4:64151708-64151727 | Msa0694790:intron | 45.0% | |
| AGAATACTGGGCCAGAGATA+TGG | - | chr4_4:64152129-64152148 | Msa0694790:intron | 45.0% | |
| TTAGTCTCGGCAATTGGAAC+CGG | - | chr4_4:64152179-64152198 | Msa0694790:CDS | 45.0% | |
| CACAGGACCACACATAATTC+AGG | - | chr4_4:64152476-64152495 | Msa0694790:CDS | 45.0% | |
| !! | ATAATTCAGGGTATTGGGGC+TGG | - | chr4_4:64152489-64152508 | Msa0694790:CDS | 45.0% |
| AAACAGGTGGGAATTTCCTC+AGG | - | chr4_4:64152910-64152929 | Msa0694790:intron | 45.0% | |
| CAGGTTGTATTCCCAAGCTT+CGG | - | chr4_4:64153243-64153262 | Msa0694790:CDS | 45.0% | |
| ! | TGCCAAGTGATGGAAATCCA+AGG | + | chr4_4:64153462-64153481 | None:intergenic | 45.0% |
| !! | AAAGCAAGAGTGCCAAGTGA+TGG | + | chr4_4:64153472-64153491 | None:intergenic | 45.0% |
| GGCACTCTTGCTTTGTATTG+TGG | - | chr4_4:64153478-64153497 | Msa0694790:CDS | 45.0% | |
| GGCGACGACAATAACAAAAG+TGG | + | chr4_4:64153508-64153527 | None:intergenic | 45.0% | |
| !! | TATTATTAGTATAAAAATAT+GGG | + | chr4_4:64151331-64151350 | None:intergenic | 5.0% |
| TTGGGATTCGACAAAGGCAG+GGG | + | chr4_4:64150767-64150786 | None:intergenic | 50.0% | |
| ! | GTTTGGGATTCGACAAAGGC+AGG | + | chr4_4:64150769-64150788 | None:intergenic | 50.0% |
| !! | GCTGGTTTGGGATTCGACAA+AGG | + | chr4_4:64150773-64150792 | None:intergenic | 50.0% |
| ATGCATGACTGCATGTCCTC+GGG | + | chr4_4:64151171-64151190 | None:intergenic | 50.0% | |
| ! | GCTTTGGTTCCTTGCAGGAT+AGG | - | chr4_4:64151660-64151679 | Msa0694790:CDS | 50.0% |
| AGGACTCATAACACCTGGGA+AGG | - | chr4_4:64151713-64151732 | Msa0694790:intron | 50.0% | |
| AATTCCTGTGTTCCCACCGT+AGG | + | chr4_4:64151874-64151893 | None:intergenic | 50.0% | |
| TACGGTGGGAACACAGGAAT+TGG | - | chr4_4:64151873-64151892 | Msa0694790:intron | 50.0% | |
| AACTGCTCCACTCATAGCCT+TGG | + | chr4_4:64152021-64152040 | None:intergenic | 50.0% | |
| AGCTCCAGAAAGAGTTCCAC+CGG | + | chr4_4:64152201-64152220 | None:intergenic | 50.0% | |
| GTGTGGTCCTGTGATTTAGC+AGG | + | chr4_4:64152469-64152488 | None:intergenic | 50.0% | |
| TGCAAGGCAAATAGCACTCC+AGG | - | chr4_4:64152689-64152708 | Msa0694790:intron | 50.0% | |
| AGGCAAATAGCACTCCAGGA+AGG | - | chr4_4:64152693-64152712 | Msa0694790:intron | 50.0% | |
| CACATTCTTCTCGAGCTTCC+TGG | + | chr4_4:64153296-64153315 | None:intergenic | 50.0% | |
| AGCTGAAACGGTGGCTGGTA+CGG | + | chr4_4:64150723-64150742 | None:intergenic | 55.0% | |
| TCCTGGTTGAGCTGAAACGG+TGG | + | chr4_4:64150732-64150751 | None:intergenic | 55.0% | |
| TCTGGACAGATCTCACCGTC+TGG | + | chr4_4:64151284-64151303 | None:intergenic | 55.0% | |
| GACGGTGAGATCTGTCCAGA+AGG | - | chr4_4:64151284-64151303 | Msa0694790:intron | 55.0% | |
| GTGAGATCTGTCCAGAAGGC+AGG | - | chr4_4:64151288-64151307 | Msa0694790:intron | 55.0% | |
| ATGCATGCAGTCCTGCCTTC+TGG | + | chr4_4:64151302-64151321 | None:intergenic | 55.0% | |
| AGAACCTACGGTGGGAACAC+AGG | - | chr4_4:64151867-64151886 | Msa0694790:intron | 55.0% | |
| GGAACCGGTGGAACTCTTTC+TGG | - | chr4_4:64152194-64152213 | Msa0694790:CDS | 55.0% | |
| !! | GGTGGAACTCTTTCTGGAGC+TGG | - | chr4_4:64152200-64152219 | Msa0694790:CDS | 55.0% |
| CACTAACCAGCAAGCCTTCC+TGG | + | chr4_4:64152710-64152729 | None:intergenic | 55.0% | |
| AGCTGTAGCAGCACAACCTG+AGG | + | chr4_4:64152929-64152948 | None:intergenic | 55.0% | |
| TGCTGCTACAGCTGCATTGC+AGG | - | chr4_4:64152936-64152955 | Msa0694790:intron | 55.0% | |
| GGTTGAGCTGAAACGGTGGC+TGG | + | chr4_4:64150728-64150747 | None:intergenic | 60.0% | |
| GCCACCGTTTCAGCTCAACC+AGG | - | chr4_4:64150728-64150747 | Msa0694790:three_prime_UTR | 60.0% | |
| GTCTCGGCAATTGGAACCGG+TGG | - | chr4_4:64152182-64152201 | Msa0694790:CDS | 60.0% | |
| AGCACTCCAGGAAGGCTTGC+TGG | - | chr4_4:64152701-64152720 | Msa0694790:intron | 60.0% | |
| CCTAGGAGACAACCCACCCA+AGG | + | chr4_4:64153559-64153578 | None:intergenic | 60.0% | |
| !! | CCTTGGGTGGGTTGTCTCCT+AGG | - | chr4_4:64153556-64153575 | Msa0694790:five_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 64150461 | 64153732 | 64150461 | ID=Msa0694790;Name=Msa0694790 |
| chr4_4 | mRNA | 64150461 | 64153732 | 64150461 | ID=Msa0694790-mRNA-1;Parent=Msa0694790;Name=Msa0694790-mRNA-1;_AED=0.31;_eAED=0.31;_QI=209|0.77|0.8|1|0.88|0.8|10|394|343 |
| chr4_4 | exon | 64150461 | 64150947 | 64150461 | ID=Msa0694790-mRNA-1:exon:18318;Parent=Msa0694790-mRNA-1 |
| chr4_4 | exon | 64151197 | 64151277 | 64151197 | ID=Msa0694790-mRNA-1:exon:18317;Parent=Msa0694790-mRNA-1 |
| chr4_4 | exon | 64151471 | 64151530 | 64151471 | ID=Msa0694790-mRNA-1:exon:18316;Parent=Msa0694790-mRNA-1 |
| chr4_4 | exon | 64151633 | 64151712 | 64151633 | ID=Msa0694790-mRNA-1:exon:18315;Parent=Msa0694790-mRNA-1 |
| chr4_4 | exon | 64151807 | 64151858 | 64151807 | ID=Msa0694790-mRNA-1:exon:18314;Parent=Msa0694790-mRNA-1 |
| chr4_4 | exon | 64151937 | 64152074 | 64151937 | ID=Msa0694790-mRNA-1:exon:18313;Parent=Msa0694790-mRNA-1 |
| chr4_4 | exon | 64152135 | 64152335 | 64152135 | ID=Msa0694790-mRNA-1:exon:18312;Parent=Msa0694790-mRNA-1 |
| chr4_4 | exon | 64152459 | 64152516 | 64152459 | ID=Msa0694790-mRNA-1:exon:18311;Parent=Msa0694790-mRNA-1 |
| chr4_4 | exon | 64153161 | 64153270 | 64153161 | ID=Msa0694790-mRNA-1:exon:18310;Parent=Msa0694790-mRNA-1 |
| chr4_4 | exon | 64153365 | 64153732 | 64153365 | ID=Msa0694790-mRNA-1:exon:18309;Parent=Msa0694790-mRNA-1 |
| chr4_4 | five_prime_UTR | 64153524 | 64153732 | 64153524 | ID=Msa0694790-mRNA-1:five_prime_utr;Parent=Msa0694790-mRNA-1 |
| chr4_4 | CDS | 64153365 | 64153523 | 64153365 | ID=Msa0694790-mRNA-1:cds;Parent=Msa0694790-mRNA-1 |
| chr4_4 | CDS | 64153161 | 64153270 | 64153161 | ID=Msa0694790-mRNA-1:cds;Parent=Msa0694790-mRNA-1 |
| chr4_4 | CDS | 64152459 | 64152516 | 64152459 | ID=Msa0694790-mRNA-1:cds;Parent=Msa0694790-mRNA-1 |
| chr4_4 | CDS | 64152135 | 64152335 | 64152135 | ID=Msa0694790-mRNA-1:cds;Parent=Msa0694790-mRNA-1 |
| chr4_4 | CDS | 64151937 | 64152074 | 64151937 | ID=Msa0694790-mRNA-1:cds;Parent=Msa0694790-mRNA-1 |
| chr4_4 | CDS | 64151807 | 64151858 | 64151807 | ID=Msa0694790-mRNA-1:cds;Parent=Msa0694790-mRNA-1 |
| chr4_4 | CDS | 64151633 | 64151712 | 64151633 | ID=Msa0694790-mRNA-1:cds;Parent=Msa0694790-mRNA-1 |
| chr4_4 | CDS | 64151471 | 64151530 | 64151471 | ID=Msa0694790-mRNA-1:cds;Parent=Msa0694790-mRNA-1 |
| chr4_4 | CDS | 64151197 | 64151277 | 64151197 | ID=Msa0694790-mRNA-1:cds;Parent=Msa0694790-mRNA-1 |
| chr4_4 | CDS | 64150855 | 64150947 | 64150855 | ID=Msa0694790-mRNA-1:cds;Parent=Msa0694790-mRNA-1 |
| chr4_4 | three_prime_UTR | 64150461 | 64150854 | 64150461 | ID=Msa0694790-mRNA-1:three_prime_utr;Parent=Msa0694790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
