AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0380110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380110 MtrunA17_Chr3g0133341 97.887 568 12 0 1 568 1 568 0.0 1151
Msa0380110 MtrunA17_Chr1g0193391 49.470 566 253 8 10 559 11 559 0.0 564
Msa0380110 MtrunA17_Chr7g0271221 50.181 552 249 6 14 556 17 551 0.0 547
Msa0380110 MtrunA17_Chr2g0284701 47.935 557 266 8 16 550 34 588 0.0 531
Msa0380110 MtrunA17_Chr4g0069581 49.432 528 244 4 32 550 4 517 1.84e-173 503
Msa0380110 MtrunA17_Chr8g0379971 44.541 577 277 9 13 550 19 591 1.82e-164 481
Msa0380110 MtrunA17_Chr8g0379991 44.876 566 260 7 35 550 1 564 5.04e-154 453
Msa0380110 MtrunA17_Chr5g0415961 41.103 562 301 7 10 550 20 572 8.03e-151 445
Msa0380110 MtrunA17_Chr8g0362711 41.404 570 299 7 10 556 20 577 1.51e-146 434
Msa0380110 MtrunA17_Chr2g0276751 40.942 552 293 8 10 550 34 563 6.47e-145 431
Msa0380110 MtrunA17_Chr5g0422881 39.539 564 323 6 14 564 20 578 1.66e-140 419
Msa0380110 MtrunA17_Chr8g0375311 37.545 554 326 5 10 550 36 582 2.24e-131 395
Msa0380110 MtrunA17_Chr4g0005901 39.029 556 316 8 10 552 28 573 1.29e-128 388
Msa0380110 MtrunA17_Chr8g0375291 38.321 548 318 5 10 544 36 576 1.64e-128 388
Msa0380110 MtrunA17_Chr5g0399061 36.814 565 331 9 11 559 24 578 3.39e-128 387
Msa0380110 MtrunA17_Chr7g0261811 38.686 548 324 6 10 549 23 566 7.81e-128 387
Msa0380110 MtrunA17_Chr7g0261881 38.251 549 327 6 10 550 23 567 8.12e-127 384
Msa0380110 MtrunA17_Chr7g0241741 38.530 558 316 10 10 552 18 563 1.18e-126 383
Msa0380110 MtrunA17_Chr8g0375341 37.276 558 328 6 10 553 36 585 3.11e-126 382
Msa0380110 MtrunA17_Chr7g0261791 36.984 557 340 6 10 558 25 578 5.07e-126 382
Msa0380110 MtrunA17_Chr3g0142101 36.861 567 329 11 14 567 35 585 2.15e-125 380
Msa0380110 MtrunA17_Chr5g0399071 37.589 564 330 7 10 559 21 576 5.97e-125 379
Msa0380110 MtrunA17_Chr8g0375351 36.804 557 332 5 10 553 36 585 7.69e-124 376
Msa0380110 MtrunA17_Chr8g0375321 37.004 554 331 5 10 551 33 580 1.36e-122 373
Msa0380110 MtrunA17_Chr4g0056431 37.986 566 328 8 10 559 21 579 8.24e-121 369
Msa0380110 MtrunA17_Chr1g0187241 35.624 553 344 4 6 550 18 566 1.01e-120 369
Msa0380110 MtrunA17_Chr3g0142091 36.590 563 332 9 14 564 26 575 1.26e-120 368
Msa0380110 MtrunA17_Chr7g0255621 35.602 573 350 7 6 564 12 579 1.56e-120 368
Msa0380110 MtrunA17_Chr3g0104011 35.676 555 334 8 10 550 18 563 2.08e-119 364
Msa0380110 MtrunA17_Chr7g0261771 36.131 548 340 5 10 550 27 571 3.29e-119 365
Msa0380110 MtrunA17_Chr7g0261851 36.918 558 342 5 6 556 20 574 3.18e-118 362
Msa0380110 MtrunA17_Chr8g0375331 36.643 554 331 5 10 550 20 566 5.19e-118 361
Msa0380110 MtrunA17_Chr8g0375361 36.347 553 328 6 13 550 38 581 1.60e-117 360
Msa0380110 MtrunA17_Chr7g0214731 36.252 571 340 11 16 568 63 627 3.33e-116 358
Msa0380110 MtrunA17_Chr7g0255611 35.192 574 347 10 9 564 26 592 5.78e-116 356
Msa0380110 MtrunA17_Chr4g0063591 37.702 557 314 9 11 550 19 559 1.64e-114 352
Msa0380110 MtrunA17_Chr7g0255601 35.519 549 335 7 16 550 29 572 1.98e-112 348
Msa0380110 MtrunA17_Chr1g0166711 35.766 548 341 5 10 550 21 564 1.83e-111 345
Msa0380110 MtrunA17_Chr1g0166791 32.605 549 358 5 10 550 20 564 8.10e-110 340
Msa0380110 MtrunA17_Chr7g0240381 35.357 560 333 9 6 553 19 561 1.43e-108 337
Msa0380110 MtrunA17_Chr7g0261661 40.749 454 257 6 104 549 3 452 1.45e-108 334
Msa0380110 MtrunA17_Chr3g0114501 36.823 554 327 9 10 550 18 561 1.51e-108 337
Msa0380110 MtrunA17_Chr4g0008651 34.234 555 344 8 18 562 38 581 1.52e-105 329
Msa0380110 MtrunA17_Chr3g0112611 34.426 549 339 7 18 555 36 574 1.13e-102 322
Msa0380110 MtrunA17_Chr8g0353031 35.053 562 313 10 16 553 20 553 3.18e-102 320
Msa0380110 MtrunA17_Chr5g0439381 34.103 563 346 7 10 564 24 569 6.03e-102 320
Msa0380110 MtrunA17_Chr1g0166771 34.816 517 315 8 27 533 3 507 7.85e-102 318
Msa0380110 MtrunA17_Chr5g0415791 35.125 558 340 8 14 554 29 581 4.72e-101 318
Msa0380110 MtrunA17_Chr3g0112671 33.757 551 334 8 22 562 41 570 7.73e-101 317
Msa0380110 MtrunA17_Chr4g0014871 33.635 553 330 10 10 550 26 553 2.15e-100 315
Msa0380110 MtrunA17_Chr1g0166741 33.586 527 331 6 13 531 26 541 4.31e-100 315
Msa0380110 MtrunA17_Chr7g0217461 32.230 574 362 7 10 564 20 585 9.55e-98 309
Msa0380110 MtrunA17_Chr4g0014801 34.601 552 325 10 10 550 25 551 2.91e-97 306
Msa0380110 MtrunA17_Chr1g0166731 36.543 457 279 5 101 550 9 461 4.66e-96 301
Msa0380110 MtrunA17_Chr4g0054891 31.634 569 360 8 10 562 106 661 7.84e-96 306
Msa0380110 MtrunA17_Chr4g0014791 34.182 550 328 10 10 550 25 549 1.60e-95 302
Msa0380110 MtrunA17_Chr4g0014781 32.909 550 337 8 10 550 25 551 5.91e-95 301
Msa0380110 MtrunA17_Chr5g0400371 30.071 562 371 7 10 555 108 663 1.72e-94 303
Msa0380110 MtrunA17_Chr3g0077151 33.996 553 320 9 10 550 24 543 3.45e-94 298
Msa0380110 MtrunA17_Chr1g0213711 30.404 569 365 11 14 566 21 574 1.01e-93 298
Msa0380110 MtrunA17_Chr4g0014841 33.091 550 334 10 10 550 25 549 1.03e-92 295
Msa0380110 MtrunA17_Chr4g0011471 32.844 545 333 8 24 548 26 557 3.53e-91 291
Msa0380110 MtrunA17_Chr7g0218851 30.672 551 354 11 13 548 45 582 4.16e-91 292
Msa0380110 MtrunA17_Chr7g0261751 34.958 472 267 4 10 443 27 496 6.26e-91 289
Msa0380110 MtrunA17_Chr4g0059991 30.957 575 348 13 12 554 20 577 1.30e-90 290
Msa0380110 MtrunA17_Chr4g0059971 31.041 567 351 8 10 550 32 584 6.22e-89 286
Msa0380110 MtrunA17_Chr7g0214461 29.982 547 357 10 15 548 79 612 8.64e-88 284
Msa0380110 MtrunA17_Chr3g0082631 35.682 440 259 7 140 559 30 465 1.11e-87 279
Msa0380110 MtrunA17_Chr4g0011041 29.875 559 361 8 10 548 32 579 1.75e-87 282
Msa0380110 MtrunA17_Chr4g0060071 51.210 248 116 1 309 551 52 299 5.84e-87 271
Msa0380110 MtrunA17_Chr4g0059981 30.517 580 360 13 11 563 30 593 1.34e-85 278
Msa0380110 MtrunA17_Chr1g0147631 32.860 563 343 12 14 556 25 572 6.46e-83 270
Msa0380110 MtrunA17_Chr4g0014861 34.824 425 259 7 136 550 12 428 8.42e-83 265
Msa0380110 MtrunA17_Chr2g0331521 30.590 559 358 13 14 553 22 569 1.03e-81 267
Msa0380110 MtrunA17_Chr2g0331481 31.349 571 357 12 5 554 16 572 2.29e-81 267
Msa0380110 MtrunA17_Chr4g0060001 31.588 554 344 11 15 547 30 569 3.74e-81 266
Msa0380110 MtrunA17_Chr4g0003761 30.915 579 364 15 9 566 26 589 4.42e-81 265
Msa0380110 MtrunA17_Chr8g0390331 30.357 560 359 11 12 554 13 558 5.67e-81 265
Msa0380110 MtrunA17_Chr2g0331511 31.944 576 358 15 7 562 16 577 7.67e-81 266
Msa0380110 MtrunA17_Chr7g0240271 28.727 550 364 8 14 544 24 564 2.49e-80 263
Msa0380110 MtrunA17_Chr8g0362781 28.371 571 380 8 7 555 23 586 8.01e-80 262
Msa0380110 MtrunA17_Chr2g0331471 31.634 569 352 15 7 554 83 635 2.29e-78 261
Msa0380110 MtrunA17_Chr7g0240281 29.730 555 360 10 14 547 24 569 1.13e-76 254
Msa0380110 MtrunA17_Chr8g0362801 32.409 469 295 10 113 565 12 474 9.41e-76 248
Msa0380110 MtrunA17_Chr7g0234151 34.735 452 254 10 101 547 3 418 2.02e-73 240
Msa0380110 MtrunA17_Chr7g0234381 34.513 452 255 9 101 547 3 418 6.00e-73 239
Msa0380110 MtrunA17_Chr1g0177591 30.877 570 346 14 2 554 32 570 6.01e-72 241
Msa0380110 MtrunA17_Chr7g0234181 33.259 448 260 7 104 547 1 413 1.29e-70 233
Msa0380110 MtrunA17_Chr7g0261731 36.061 330 208 2 10 338 27 354 1.31e-70 231
Msa0380110 MtrunA17_Chr7g0235521 30.065 459 293 8 105 544 4 453 9.20e-69 229
Msa0380110 MtrunA17_Chr1g0157611 29.189 555 360 13 12 547 14 554 2.33e-68 231
Msa0380110 MtrunA17_Chr7g0240211 30.065 459 293 8 105 544 4 453 4.38e-68 228
Msa0380110 MtrunA17_Chr7g0240181 30.065 459 293 8 105 544 4 453 5.29e-68 228
Msa0380110 MtrunA17_Chr7g0240131 29.847 459 294 8 105 544 4 453 1.09e-67 227
Msa0380110 MtrunA17_Chr1g0157601 28.678 537 354 11 18 537 19 543 1.69e-67 229
Msa0380110 MtrunA17_Chr2g0331461 30.427 562 358 12 5 546 16 564 1.89e-66 228
Msa0380110 MtrunA17_Chr2g0326211 28.214 560 351 15 14 552 20 549 3.05e-66 225
Msa0380110 MtrunA17_Chr2g0325951 27.957 558 354 14 17 552 18 549 3.87e-66 224
Msa0380110 MtrunA17_Chr2g0325961 28.417 556 355 13 17 552 18 550 1.49e-65 223
Msa0380110 MtrunA17_Chr7g0240151 30.044 456 279 8 105 544 4 435 1.84e-65 220
Msa0380110 MtrunA17_Chr5g0415841 29.274 468 310 7 104 554 3 466 1.05e-64 219
Msa0380110 MtrunA17_Chr1g0157621 29.691 485 311 14 74 541 40 511 4.31e-61 211
Msa0380110 MtrunA17_Chr3g0142121 38.869 283 154 7 292 564 11 284 3.51e-58 196
Msa0380110 MtrunA17_Chr1g0177611 31.767 447 266 12 131 554 11 441 7.94e-58 199
Msa0380110 MtrunA17_Chr3g0142111 36.111 288 174 4 14 298 46 326 5.93e-55 189
Msa0380110 MtrunA17_Chr1g0177631 31.544 447 267 12 131 554 11 441 1.26e-54 191
Msa0380110 MtrunA17_Chr6g0451841 26.678 566 356 15 15 554 8 540 1.58e-54 193
Msa0380110 MtrunA17_Chr3g0112631 36.678 289 165 8 291 567 3 285 4.14e-50 174
Msa0380110 MtrunA17_Chr7g0261721 37.441 211 124 3 358 561 5 214 3.63e-36 135
Msa0380110 MtrunA17_Chr4g0060061 44.715 123 68 0 128 250 6 128 6.07e-33 122
Msa0380110 MtrunA17_Chr7g0261831 43.333 150 80 3 247 392 1 149 6.48e-31 119
Msa0380110 MtrunA17_Chr3g0112651 34.731 167 108 1 126 292 38 203 3.59e-27 109
Msa0380110 MtrunA17_Chr1g0147591 30.693 202 123 3 143 332 5 201 3.13e-24 100
Msa0380110 MtrunA17_Chr2g0326221 29.333 225 133 6 329 552 26 225 5.56e-23 97.8
Msa0380110 MtrunA17_Chr4g0060051 40.217 92 55 0 9 100 17 108 4.56e-17 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380110 AT1G27040.1 45.304 543 279 7 16 549 27 560 2.20e-157 462
Msa0380110 AT1G27040.2 45.304 543 279 7 16 549 23 556 3.36e-157 461
Msa0380110 AT1G27040.3 45.009 531 274 7 28 549 7 528 5.25e-154 452
Msa0380110 AT1G69850.1 42.807 570 292 5 13 555 22 584 3.33e-153 452
Msa0380110 AT1G59740.1 40.619 549 304 6 10 546 35 573 9.74e-141 420
Msa0380110 AT1G33440.1 40.345 580 314 9 3 567 25 587 7.79e-137 410
Msa0380110 AT5G62730.1 39.318 557 305 6 9 551 49 586 2.35e-132 399
Msa0380110 AT1G68570.1 40.107 561 315 6 12 556 19 574 3.02e-130 394
Msa0380110 AT5G62730.2 39.522 544 296 6 22 551 3 527 8.03e-130 390
Msa0380110 AT1G68570.2 40.367 545 304 6 28 556 5 544 7.73e-128 386
Msa0380110 AT5G01180.2 38.739 555 316 9 10 550 19 563 1.06e-126 384
Msa0380110 AT5G01180.3 38.739 555 316 9 10 550 19 563 1.06e-126 384
Msa0380110 AT5G01180.1 38.739 555 316 9 10 550 19 563 1.06e-126 384
Msa0380110 AT2G02040.1 37.545 554 326 5 10 550 35 581 1.48e-126 384
Msa0380110 AT3G54140.1 36.937 555 327 8 10 550 18 563 3.17e-123 374
Msa0380110 AT3G54140.2 36.937 555 327 8 10 550 18 563 3.17e-123 374
Msa0380110 AT1G62200.1 37.097 558 323 8 10 552 46 590 5.78e-122 372
Msa0380110 AT3G25280.1 38.547 537 289 10 16 547 21 521 3.28e-121 368
Msa0380110 AT2G26690.1 38.324 561 314 8 10 554 18 562 6.06e-121 369
Msa0380110 AT2G26690.2 38.858 543 300 8 28 554 3 529 8.55e-119 362
Msa0380110 AT3G25260.1 39.147 539 289 12 10 547 15 515 1.40e-118 361
Msa0380110 AT1G12110.1 36.444 568 340 7 10 562 21 582 5.83e-118 362
Msa0380110 AT1G62200.2 35.495 586 323 8 10 552 46 619 9.87e-118 362
Msa0380110 AT2G26690.3 39.434 530 289 8 41 554 4 517 1.64e-117 358
Msa0380110 AT1G62200.3 35.495 586 323 8 10 552 60 633 1.66e-117 362
Msa0380110 AT2G02020.1 35.688 538 306 5 10 542 36 538 2.35e-114 351
Msa0380110 AT5G46050.1 37.011 562 339 9 13 565 23 578 1.58e-111 345
Msa0380110 AT5G46040.1 35.649 547 340 7 12 550 22 564 6.60e-110 341
Msa0380110 AT5G13400.1 35.125 558 341 9 16 556 64 617 1.29e-107 336
Msa0380110 AT3G54450.1 34.464 560 327 10 14 555 10 547 3.26e-105 327
Msa0380110 AT1G69870.1 35.060 579 351 9 6 565 41 613 6.11e-105 329
Msa0380110 AT3G21670.1 35.507 552 329 6 10 550 23 558 1.76e-104 327
Msa0380110 AT2G40460.1 35.199 554 338 10 10 554 18 559 1.64e-103 324
Msa0380110 AT2G37900.1 34.342 562 337 9 6 553 26 569 3.13e-103 323
Msa0380110 AT3G53960.1 33.573 557 340 11 13 553 34 576 5.79e-100 315
Msa0380110 AT1G32450.1 31.652 575 367 9 10 564 31 599 4.17e-97 308
Msa0380110 AT5G46050.2 38.085 470 277 8 104 565 3 466 2.42e-96 302
Msa0380110 AT1G72140.1 34.347 559 317 11 10 551 28 553 3.37e-96 304
Msa0380110 AT4G21680.1 31.851 562 358 7 10 553 22 576 6.49e-95 302
Msa0380110 AT2G37900.2 34.940 498 294 8 68 553 11 490 1.03e-94 298
Msa0380110 AT2G02020.2 32.288 542 298 8 10 542 36 517 4.87e-94 298
Msa0380110 AT1G22570.1 33.892 537 313 11 11 528 25 538 1.58e-92 295
Msa0380110 AT1G22550.1 32.270 564 337 9 11 554 25 563 2.18e-92 295
Msa0380110 AT1G72125.1 32.731 553 340 10 14 553 26 559 8.28e-92 293
Msa0380110 AT1G72120.1 33.394 548 330 8 18 553 31 555 3.20e-91 291
Msa0380110 AT1G22540.1 33.454 553 338 10 10 553 24 555 4.95e-90 288
Msa0380110 AT1G22570.2 33.846 520 302 11 28 528 5 501 5.16e-89 285
Msa0380110 AT5G62680.1 31.294 572 364 9 5 555 34 597 3.03e-88 285
Msa0380110 AT1G72130.1 32.721 544 318 10 18 550 27 533 2.10e-87 281
Msa0380110 AT1G27080.1 31.542 577 361 11 1 562 1 558 5.01e-87 281
Msa0380110 AT5G19640.1 30.275 545 343 10 18 548 61 582 4.06e-84 274
Msa0380110 AT3G47960.1 31.206 564 359 9 14 555 57 613 4.75e-83 272
Msa0380110 AT3G16180.1 30.070 572 371 11 10 561 16 578 3.23e-81 266
Msa0380110 AT1G27080.2 33.072 511 310 10 67 562 23 516 8.47e-81 263
Msa0380110 AT1G18880.1 29.772 571 364 11 19 567 22 577 1.99e-80 264
Msa0380110 AT1G52190.1 29.021 572 375 11 14 563 19 581 1.24e-78 259
Msa0380110 AT3G45660.1 29.821 560 355 14 15 561 20 554 4.20e-77 254
Msa0380110 AT3G45660.3 29.821 560 355 14 15 561 20 554 4.20e-77 254
Msa0380110 AT3G45660.2 29.821 560 355 14 15 561 41 575 5.03e-77 254
Msa0380110 AT3G45650.1 29.502 522 337 8 42 554 48 547 1.95e-76 253
Msa0380110 AT3G45720.1 30.280 535 334 12 42 563 45 553 7.98e-76 251
Msa0380110 AT1G69860.1 29.837 553 365 8 14 556 16 555 9.05e-76 251
Msa0380110 AT3G45710.1 29.923 518 328 13 59 563 63 558 1.80e-74 247
Msa0380110 AT3G45700.1 30.784 536 330 15 45 563 35 546 3.50e-73 244
Msa0380110 AT1G72130.2 33.716 436 255 8 125 549 2 414 1.01e-72 239
Msa0380110 AT1G72130.3 33.716 436 255 8 125 549 2 414 1.01e-72 239
Msa0380110 AT5G28470.2 27.965 565 380 9 6 555 7 559 1.29e-72 243
Msa0380110 AT3G45680.1 30.038 526 332 12 42 555 46 547 2.01e-72 242
Msa0380110 AT3G45650.2 28.233 549 337 9 42 555 48 574 1.56e-71 240
Msa0380110 AT5G28470.1 27.788 565 379 10 6 555 7 557 1.64e-69 234
Msa0380110 AT3G45690.1 29.084 557 327 17 5 554 8 503 7.53e-68 229
Msa0380110 AT5G14940.1 27.352 574 355 17 14 556 5 547 3.70e-60 209
Msa0380110 AT3G01350.1 26.279 567 364 12 14 548 5 549 1.96e-54 194
Msa0380110 AT2G38100.1 24.587 545 339 17 44 564 18 514 6.42e-31 127
Msa0380110 AT2G38100.2 24.587 545 339 17 44 564 2 498 7.21e-31 126
Msa0380110 AT2G38100.3 24.587 545 339 17 44 564 24 520 8.66e-31 126
Msa0380110 AT5G11570.1 22.684 529 329 12 25 547 22 476 1.33e-30 125

Find 116 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGACATGTTTACACTTAT+TGG 0.112396 3_1:+81672847 Msa0380110:CDS
AATATTGTGCTTAATATTAT+TGG 0.168870 3_1:-81672448 None:intergenic
TTTACTTGGTTTGTGCTTCT+TGG 0.185331 3_1:+81673091 Msa0380110:CDS
CTTCTGCATTCTCCGGAATT+TGG 0.196390 3_1:-81672137 None:intergenic
CTTACCACAGGAGCAATATT+TGG 0.237027 3_1:+81671820 Msa0380110:CDS
TTGGTGTTACTTTCATTAAT+TGG 0.238023 3_1:+81671839 Msa0380110:CDS
AACAACCCTAACCAACTTAA+TGG 0.251379 3_1:+81670673 Msa0380110:CDS
CACTTAGTACAGCAATTTCT+TGG 0.276660 3_1:+81672914 Msa0380110:CDS
ACCTGTATGATTCTAATTAG+AGG 0.292803 3_1:-81671982 None:intergenic
CACCTTCAAAGAATTGGAAT+TGG 0.306342 3_1:+81672673 Msa0380110:CDS
GAAAGTTGAGCTGCTTCCTT+TGG 0.308304 3_1:-81671769 None:intergenic
TTGGATCTTTATCATCAAAT+TGG 0.315670 3_1:-81671750 None:intergenic
CCTAGTCTTCTTTGTACCCT+TGG 0.318512 3_1:-81670424 None:intergenic
ATCTACCATATTATGTTCTA+TGG 0.326060 3_1:-81672761 None:intergenic
CAGTTCCCATTAAGTTGGTT+AGG 0.326657 3_1:-81670679 None:intergenic
TCTTTGAAGGTGTCGGATTC+CGG 0.328102 3_1:-81672662 None:intergenic
ATCCGACACCTTCAAAGAAT+TGG 0.340962 3_1:+81672667 Msa0380110:CDS
GCTATATCTTTGCAAGGAAT+TGG 0.342659 3_1:-81671601 None:intergenic
TTAAAAGGACTGATCAATTC+AGG 0.346244 3_1:+81672208 Msa0380110:CDS
CACTTGTTCCTAATGCAAAA+AGG 0.346610 3_1:-81671693 None:intergenic
ACAGTTATGAAATCCTTAAA+AGG 0.349093 3_1:+81672193 Msa0380110:CDS
TCACATTGGTTCATATGAAT+TGG 0.352432 3_1:-81671625 None:intergenic
GCTATATCAATGTTAGTTGC+TGG 0.355294 3_1:+81672709 Msa0380110:CDS
CTCAATTCTCTCTATTTGCA+TGG 0.360522 3_1:+81671921 Msa0380110:CDS
TGTAGCCATAGAACATAATA+TGG 0.362955 3_1:+81672756 Msa0380110:CDS
AAATGATGTTGACATGGTTA+AGG 0.368323 3_1:+81673155 Msa0380110:CDS
TGCATTTCTTCTGCATTCTC+CGG 0.374049 3_1:-81672144 None:intergenic
AAGGAATTGGTCTTAATTGT+TGG 0.385710 3_1:-81671588 None:intergenic
TCTTGGTGTTCTGTTGCATT+TGG 0.392399 3_1:+81672931 Msa0380110:CDS
CTCGGTCGTATAGAGGAATT+AGG 0.398446 3_1:-81672600 None:intergenic
CATTTATCTATATAAGTTCA+TGG 0.398857 3_1:+81670110 Msa0380110:five_prime_UTR
ATGAACAATAGAGGGATTAC+TGG 0.402130 3_1:-81672571 None:intergenic
ATCCAATTCCAATTCTTTGA+AGG 0.403302 3_1:-81672675 None:intergenic
CCAGGGAATCTGCAGAAGTA+TGG 0.408046 3_1:+81670393 Msa0380110:intron
CTAATTAGAGGACTTCCCTT+TGG 0.409783 3_1:-81671970 None:intergenic
AGCTTAATAACTTATTTCAC+TGG 0.415965 3_1:+81670620 Msa0380110:CDS
TTAATATTATTGGTAGCATT+CGG 0.424737 3_1:-81672438 None:intergenic
AACCTTGGACACAAACATCT+TGG 0.425740 3_1:+81672522 Msa0380110:CDS
ATCAAATTGGTCAGCTCCTA+AGG 0.427585 3_1:-81671737 None:intergenic
TTGTGTTCTGTTTGCATGCA+TGG 0.432835 3_1:+81670763 Msa0380110:CDS
AACCAATGTGAACCTGCTAA+TGG 0.439088 3_1:+81671637 Msa0380110:CDS
ATTAGGAACAAGTGGTGTTA+AGG 0.443046 3_1:+81671702 Msa0380110:CDS
TCAAAGAATTGGAATTGGAT+TGG 0.444870 3_1:+81672678 Msa0380110:CDS
TTCTATGCAGAAAGTTCAGC+TGG 0.449535 3_1:+81672883 Msa0380110:CDS
AAACAGAAAACTCCAAATTC+CGG 0.450491 3_1:+81672125 Msa0380110:CDS
ACCTTGGACACAAACATCTT+GGG 0.453201 3_1:+81672523 Msa0380110:CDS
GAAGGTGTCGGATTCCGGTT+GGG 0.455684 3_1:-81672657 None:intergenic
ACAACCCTAACCAACTTAAT+GGG 0.457460 3_1:+81670674 Msa0380110:CDS
CAAGCTGCTATACTTTATAC+AGG 0.458105 3_1:+81671664 Msa0380110:CDS
GTACTAATCAAGGATGGTAT+TGG 0.459784 3_1:+81671866 Msa0380110:CDS
GGAAACGTGCTTGAACTGTT+AGG 0.460595 3_1:-81671567 None:intergenic
TAGTGTCTTCTTTGATCTGA+AGG 0.461038 3_1:-81670172 None:intergenic
AGTTCCCATTAAGTTGGTTA+GGG 0.462802 3_1:-81670678 None:intergenic
AAAAGCAGTTCCCATTAAGT+TGG 0.463975 3_1:-81670684 None:intergenic
GCAGCTTGGCTTCCATTAGC+AGG 0.464099 3_1:-81671649 None:intergenic
TTCTTAGATAGAGCAGCAGT+TGG 0.471072 3_1:+81672349 Msa0380110:CDS
AGGACAAACATGAACAATAG+AGG 0.473937 3_1:-81672580 None:intergenic
AATTGGATTAGTACTAATCA+AGG 0.476446 3_1:+81671856 Msa0380110:CDS
GTTTGCATGCATGGAATTGT+TGG 0.479572 3_1:+81670772 Msa0380110:CDS
AAGGCAGCTTTACCAGCCTT+AGG 0.482025 3_1:+81671721 Msa0380110:CDS
TTCCAATTCTTTGAAGGTGT+CGG 0.483475 3_1:-81672669 None:intergenic
AGTTATTAAGCTCACTGCAT+TGG 0.489046 3_1:-81670609 None:intergenic
TCCTCTAATTAGAATCATAC+AGG 0.495772 3_1:+81671981 Msa0380110:CDS
TACAGAAACAATACTCCAAA+GGG 0.497381 3_1:+81671955 Msa0380110:CDS
GTTGAACTTTCAGGTGTTTG+TGG 0.503430 3_1:+81672092 Msa0380110:intron
TGAAGGTGTCGGATTCCGGT+TGG 0.505122 3_1:-81672658 None:intergenic
CAAATATTGCTCCTGTGGTA+AGG 0.505900 3_1:-81671819 None:intergenic
TTTCTGATACATATTTGTCT+AGG 0.508442 3_1:+81670732 Msa0380110:CDS
ATTACTGGGAGGGAGGGTCC+TGG 0.515478 3_1:-81672556 None:intergenic
TTAGATAGAGCAGCAGTTGG+AGG 0.517849 3_1:+81672352 Msa0380110:CDS
CTGTGATTCTTCGAATAAGC+GGG 0.518290 3_1:-81672630 None:intergenic
TTATTGGTAGCATTCGGACT+AGG 0.518823 3_1:-81672432 None:intergenic
ATCTTGGGATTCAAAATGCC+AGG 0.520418 3_1:+81672538 Msa0380110:CDS
GAGGAAACAGTACAGGATCA+TGG 0.528992 3_1:+81672371 Msa0380110:CDS
AGAATCACAGGAATCCCAAC+CGG 0.532778 3_1:+81672643 Msa0380110:CDS
TCCCAAGATGTTTGTGTCCA+AGG 0.533877 3_1:-81672524 None:intergenic
TCAATTCTCTCTATTTGCAT+GGG 0.538564 3_1:+81671922 Msa0380110:CDS
TTCCATTAGCAGGTTCACAT+TGG 0.538946 3_1:-81671639 None:intergenic
CCAAGGGTACAAAGAAGACT+AGG 0.545747 3_1:+81670424 Msa0380110:CDS
CATACAACAAAGCACAACCT+TGG 0.548442 3_1:+81672507 Msa0380110:CDS
GCAGTTGGAGGAAACAGTAC+AGG 0.551246 3_1:+81672364 Msa0380110:CDS
AGAGGGATTACTGGGAGGGA+GGG 0.552016 3_1:-81672562 None:intergenic
GATAAATGTGCCGCAAGTTG+TGG 0.555661 3_1:-81670095 None:intergenic
CCGCTTATTCGAAGAATCAC+AGG 0.558543 3_1:+81672631 Msa0380110:CDS
AATTGGTCAGCTCCTAAGGC+TGG 0.558800 3_1:-81671733 None:intergenic
GCTTAATAACTTATTTCACT+GGG 0.561279 3_1:+81670621 Msa0380110:CDS
TAGAGGGATTACTGGGAGGG+AGG 0.563260 3_1:-81672563 None:intergenic
CAAAGTGAGTGGTGGTTGGT+TGG 0.564096 3_1:+81672990 Msa0380110:CDS
CTTACTTCATCCACAACTTG+CGG 0.568581 3_1:+81670085 Msa0380110:five_prime_UTR
CAATAGAGGGATTACTGGGA+GGG 0.581806 3_1:-81672566 None:intergenic
CTACAGAAACAATACTCCAA+AGG 0.582632 3_1:+81671954 Msa0380110:CDS
TTAACAAAGTGAGTGGTGGT+TGG 0.583530 3_1:+81672986 Msa0380110:CDS
TATGGAAGGGTTAGAGAACA+TGG 0.587825 3_1:+81670577 Msa0380110:CDS
AACACCAAATATTGCTCCTG+TGG 0.591161 3_1:-81671824 None:intergenic
GGACAAACATGAACAATAGA+GGG 0.591843 3_1:-81672579 None:intergenic
TACAAGCACAGTGGTTGTTG+AGG 0.592321 3_1:+81672960 Msa0380110:CDS
ATTGGTGCTATATCTTTGCA+AGG 0.603950 3_1:-81671607 None:intergenic
ATTTGATGATAAAGATCCAA+AGG 0.609608 3_1:+81671753 Msa0380110:CDS
CTGTATAAAGTATAGCAGCT+TGG 0.610383 3_1:-81671663 None:intergenic
TGAACAATAGAGGGATTACT+GGG 0.612071 3_1:-81672570 None:intergenic
TGATTTAAATGATGTTGACA+TGG 0.624317 3_1:+81673149 Msa0380110:CDS
CCTGTGATTCTTCGAATAAG+CGG 0.644958 3_1:-81672631 None:intergenic
GAAGTATGGCTACACAACCA+AGG 0.645696 3_1:+81670407 Msa0380110:CDS
GGATTAGTACTAATCAAGGA+TGG 0.648794 3_1:+81671860 Msa0380110:CDS
AAGTATGGCTACACAACCAA+GGG 0.655982 3_1:+81670408 Msa0380110:CDS
ATCAAAGAAGACACTAACAA+TGG 0.660539 3_1:+81670179 Msa0380110:exon
GAAATTAATCCACCTAGGAG+TGG 0.661331 3_1:-81670713 None:intergenic
CAACATCATTTAAATCACCT+AGG 0.666986 3_1:-81673143 None:intergenic
TTGGTATAGATACAAAACAG+TGG 0.674197 3_1:+81673110 Msa0380110:CDS
TATCAGAAATTAATCCACCT+AGG 0.677447 3_1:-81670718 None:intergenic
AGGGTACAAAGAAGACTAGG+AGG 0.688134 3_1:+81670427 Msa0380110:CDS
GAGGTAGTTAACAAAGTGAG+TGG 0.707459 3_1:+81672979 Msa0380110:CDS
ACAATAGAGGGATTACTGGG+AGG 0.708379 3_1:-81672567 None:intergenic
ACAGTGGAAGACAAACACCT+AGG 0.710549 3_1:+81673126 Msa0380110:CDS
GTAGTTAACAAAGTGAGTGG+TGG 0.723635 3_1:+81672982 Msa0380110:CDS
TGGTTACTTTACAAGCACAG+TGG 0.730755 3_1:+81672951 Msa0380110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGACATTATAAAAATAAATT+TGG - chr3_1:81670038-81670057 None:intergenic 10.0%
!!! AAACATTTTTAACATATAAA+AGG - chr3_1:81670514-81670533 None:intergenic 10.0%
!!! ATTTTTAATGTTCTTCAAAA+TGG + chr3_1:81670232-81670251 Msa0380110:intron 15.0%
!! TCAATTTCTTAACTTATTAT+AGG + chr3_1:81670274-81670293 Msa0380110:intron 15.0%
!! TAACTTATTATAGGTTATAT+TGG + chr3_1:81670283-81670302 Msa0380110:intron 15.0%
!!! TAAATTGAAATTCCAATTTT+TGG + chr3_1:81670547-81670566 Msa0380110:intron 15.0%
!! TGTTTATAATGATTAATCAT+GGG - chr3_1:81671265-81671284 None:intergenic 15.0%
!! TTGTTTATAATGATTAATCA+TGG - chr3_1:81671266-81671285 None:intergenic 15.0%
!!! AACTAATTTTTTTAATTGCA+GGG + chr3_1:81671535-81671554 Msa0380110:intron 15.0%
!! AAAATGTTATTGTACTTTAA+AGG + chr3_1:81672040-81672059 Msa0380110:intron 15.0%
!! AAATGTTATTGTACTTTAAA+GGG + chr3_1:81672041-81672060 Msa0380110:intron 15.0%
!! AATATTGTGCTTAATATTAT+TGG - chr3_1:81672451-81672470 None:intergenic 15.0%
!!! ATTTGGTTACATTTTTGTAA+GGG - chr3_1:81670021-81670040 None:intergenic 20.0%
!!! AATTTGGTTACATTTTTGTA+AGG - chr3_1:81670022-81670041 None:intergenic 20.0%
!! CATTTATCTATATAAGTTCA+TGG + chr3_1:81670110-81670129 Msa0380110:five_prime_UTR 20.0%
!! TGAAGATAGAATAAAAATGA+GGG - chr3_1:81670998-81671017 None:intergenic 20.0%
!!! GCATATGAGATTTTTTTAAA+AGG + chr3_1:81671498-81671517 Msa0380110:intron 20.0%
!!! CAACTAATTTTTTTAATTGC+AGG + chr3_1:81671534-81671553 Msa0380110:intron 20.0%
!!! AACTTTCAAGCTTTTTTAAT+TGG + chr3_1:81671785-81671804 Msa0380110:CDS 20.0%
!!! ATTTAATTTGTTGAACTTTC+AGG + chr3_1:81672083-81672102 Msa0380110:intron 20.0%
!!! TTAATATTATTGGTAGCATT+CGG - chr3_1:81672441-81672460 None:intergenic 20.0%
!!! TGTAAACTTTGTATTTTACT+TGG + chr3_1:81673077-81673096 Msa0380110:CDS 20.0%
! TGAAGAACATTAAAAATGTG+TGG - chr3_1:81670229-81670248 None:intergenic 25.0%
!! ATTGAATCATTTTCCTTAAC+TGG - chr3_1:81670259-81670278 None:intergenic 25.0%
!! TTTTGTATATGGTAAGAACT+TGG + chr3_1:81670465-81670484 Msa0380110:intron 25.0%
! AGCTTAATAACTTATTTCAC+TGG + chr3_1:81670620-81670639 Msa0380110:CDS 25.0%
! GCTTAATAACTTATTTCACT+GGG + chr3_1:81670621-81670640 Msa0380110:CDS 25.0%
! TTTCTGATACATATTTGTCT+AGG + chr3_1:81670732-81670751 Msa0380110:CDS 25.0%
!! TTGATTCTCAAATGTGTTTT+CGG - chr3_1:81670882-81670901 None:intergenic 25.0%
! GTGAAGATAGAATAAAAATG+AGG - chr3_1:81670999-81671018 None:intergenic 25.0%
! TAATTGAAGGTGAATGTTTA+AGG + chr3_1:81671306-81671325 Msa0380110:intron 25.0%
! TAAAAAAATCTCATATGCGA+CGG - chr3_1:81671496-81671515 None:intergenic 25.0%
! TTGGATCTTTATCATCAAAT+TGG - chr3_1:81671753-81671772 None:intergenic 25.0%
!! ATTTGATGATAAAGATCCAA+AGG + chr3_1:81671753-81671772 Msa0380110:CDS 25.0%
!!! TTGGTGTTACTTTCATTAAT+TGG + chr3_1:81671839-81671858 Msa0380110:CDS 25.0%
!!! AATTGGATTAGTACTAATCA+AGG + chr3_1:81671856-81671875 Msa0380110:CDS 25.0%
! ACAGTTATGAAATCCTTAAA+AGG + chr3_1:81672193-81672212 Msa0380110:CDS 25.0%
! ATCTACCATATTATGTTCTA+TGG - chr3_1:81672764-81672783 None:intergenic 25.0%
!!! GGTTTTCAATATGCTATTTT+TGG + chr3_1:81672820-81672839 Msa0380110:CDS 25.0%
!!! ACAAGCTTAACTACTTTTAT+TGG + chr3_1:81673034-81673053 Msa0380110:CDS 25.0%
! TGATTTAAATGATGTTGACA+TGG + chr3_1:81673149-81673168 Msa0380110:CDS 25.0%
ATCAAAGAAGACACTAACAA+TGG + chr3_1:81670179-81670198 Msa0380110:exon 30.0%
ACATATAAAAGGACACACAT+GGG - chr3_1:81670503-81670522 None:intergenic 30.0%
AACATATAAAAGGACACACA+TGG - chr3_1:81670504-81670523 None:intergenic 30.0%
! TTTTGTTAAGCTGAAGTTCA+TGG - chr3_1:81670648-81670667 None:intergenic 30.0%
TATCAGAAATTAATCCACCT+AGG - chr3_1:81670721-81670740 None:intergenic 30.0%
CATTCACCTTCAATTATTGA+AGG - chr3_1:81671302-81671321 None:intergenic 30.0%
!! AAGGAATTGGTCTTAATTGT+TGG - chr3_1:81671591-81671610 None:intergenic 30.0%
!! TCACATTGGTTCATATGAAT+TGG - chr3_1:81671628-81671647 None:intergenic 30.0%
TCAATTCTCTCTATTTGCAT+GGG + chr3_1:81671922-81671941 Msa0380110:CDS 30.0%
TACAGAAACAATACTCCAAA+GGG + chr3_1:81671955-81671974 Msa0380110:CDS 30.0%
TCCTCTAATTAGAATCATAC+AGG + chr3_1:81671981-81672000 Msa0380110:CDS 30.0%
ACCTGTATGATTCTAATTAG+AGG - chr3_1:81671985-81672004 None:intergenic 30.0%
GAAGCATGTAGAAAAAAATG+AGG - chr3_1:81672020-81672039 None:intergenic 30.0%
AAACAGAAAACTCCAAATTC+CGG + chr3_1:81672125-81672144 Msa0380110:CDS 30.0%
! TGAATTGATCAGTCCTTTTA+AGG - chr3_1:81672209-81672228 None:intergenic 30.0%
TTAAAAGGACTGATCAATTC+AGG + chr3_1:81672208-81672227 Msa0380110:CDS 30.0%
ATCCAATTCCAATTCTTTGA+AGG - chr3_1:81672678-81672697 None:intergenic 30.0%
TCAAAGAATTGGAATTGGAT+TGG + chr3_1:81672678-81672697 Msa0380110:CDS 30.0%
TGTAGCCATAGAACATAATA+TGG + chr3_1:81672756-81672775 Msa0380110:CDS 30.0%
CAAAAAACACTCATTGGTAA+AGG - chr3_1:81672796-81672815 None:intergenic 30.0%
!!! CTTTACCAATGAGTGTTTTT+TGG + chr3_1:81672794-81672813 Msa0380110:CDS 30.0%
TTGGTATAGATACAAAACAG+TGG + chr3_1:81673110-81673129 Msa0380110:CDS 30.0%
CAACATCATTTAAATCACCT+AGG - chr3_1:81673146-81673165 None:intergenic 30.0%
AAATGATGTTGACATGGTTA+AGG + chr3_1:81673155-81673174 Msa0380110:CDS 30.0%
TAGTGTCTTCTTTGATCTGA+AGG - chr3_1:81670175-81670194 None:intergenic 35.0%
TCTTCAAAATGGACCAGTTA+AGG + chr3_1:81670243-81670262 Msa0380110:intron 35.0%
!! ATAGGTTATATTGGTGTCAC+TGG + chr3_1:81670292-81670311 Msa0380110:intron 35.0%
! AGTGTTCTAAGCAGACAATT+CGG - chr3_1:81670351-81670370 None:intergenic 35.0%
! AACTTGTTTGATTACTTGCC+AGG + chr3_1:81670375-81670394 Msa0380110:intron 35.0%
ACTTGTTTGATTACTTGCCA+GGG + chr3_1:81670376-81670395 Msa0380110:intron 35.0%
!! AGAGCTGCACTTTTTGTATA+TGG + chr3_1:81670454-81670473 Msa0380110:CDS 35.0%
TATGGTAAGAACTTGGAACT+TGG + chr3_1:81670472-81670491 Msa0380110:intron 35.0%
AGTTATTAAGCTCACTGCAT+TGG - chr3_1:81670612-81670631 None:intergenic 35.0%
AACAACCCTAACCAACTTAA+TGG + chr3_1:81670673-81670692 Msa0380110:CDS 35.0%
ACAACCCTAACCAACTTAAT+GGG + chr3_1:81670674-81670693 Msa0380110:CDS 35.0%
!! AGTTCCCATTAAGTTGGTTA+GGG - chr3_1:81670681-81670700 None:intergenic 35.0%
AAAAGCAGTTCCCATTAAGT+TGG - chr3_1:81670687-81670706 None:intergenic 35.0%
CTATCTTCACTTGCATTTCA+CGG + chr3_1:81671009-81671028 Msa0380110:intron 35.0%
TGAGAGCCTTCAATAATTGA+AGG + chr3_1:81671293-81671312 Msa0380110:intron 35.0%
CGGTTGTAAAATAATCGCTA+TGG - chr3_1:81671476-81671495 None:intergenic 35.0%
GCTATATCTTTGCAAGGAAT+TGG - chr3_1:81671604-81671623 None:intergenic 35.0%
!! ATTGGTGCTATATCTTTGCA+AGG - chr3_1:81671610-81671629 None:intergenic 35.0%
CTGTATAAAGTATAGCAGCT+TGG - chr3_1:81671666-81671685 None:intergenic 35.0%
CAAGCTGCTATACTTTATAC+AGG + chr3_1:81671664-81671683 Msa0380110:CDS 35.0%
! GGTCTATACCTTTTTGCATT+AGG + chr3_1:81671685-81671704 Msa0380110:CDS 35.0%
CACTTGTTCCTAATGCAAAA+AGG - chr3_1:81671696-81671715 None:intergenic 35.0%
! CTTTTTGCATTAGGAACAAG+TGG + chr3_1:81671694-81671713 Msa0380110:CDS 35.0%
! ATTAGGAACAAGTGGTGTTA+AGG + chr3_1:81671702-81671721 Msa0380110:CDS 35.0%
!!! TTTTTACTTAGCCTTACCAC+AGG + chr3_1:81671808-81671827 Msa0380110:CDS 35.0%
! GGATTAGTACTAATCAAGGA+TGG + chr3_1:81671860-81671879 Msa0380110:CDS 35.0%
GTACTAATCAAGGATGGTAT+TGG + chr3_1:81671866-81671885 Msa0380110:CDS 35.0%
CTCAATTCTCTCTATTTGCA+TGG + chr3_1:81671921-81671940 Msa0380110:CDS 35.0%
CTACAGAAACAATACTCCAA+AGG + chr3_1:81671954-81671973 Msa0380110:CDS 35.0%
!!! TTGGAGTTTTCTGTTTCTGA+AGG - chr3_1:81672121-81672140 None:intergenic 35.0%
GAGATCCATGAAAAAGAAAG+AGG + chr3_1:81672168-81672187 Msa0380110:CDS 35.0%
!! TGTCTCCTCTTTCTTTTTCA+TGG - chr3_1:81672176-81672195 None:intergenic 35.0%
TGAACAATAGAGGGATTACT+GGG - chr3_1:81672573-81672592 None:intergenic 35.0%
ATGAACAATAGAGGGATTAC+TGG - chr3_1:81672574-81672593 None:intergenic 35.0%
GGACAAACATGAACAATAGA+GGG - chr3_1:81672582-81672601 None:intergenic 35.0%
AGGACAAACATGAACAATAG+AGG - chr3_1:81672583-81672602 None:intergenic 35.0%
! TTCCAATTCTTTGAAGGTGT+CGG - chr3_1:81672672-81672691 None:intergenic 35.0%
CACCTTCAAAGAATTGGAAT+TGG + chr3_1:81672673-81672692 Msa0380110:CDS 35.0%
GCTATATCAATGTTAGTTGC+TGG + chr3_1:81672709-81672728 Msa0380110:CDS 35.0%
!!! ACCAATGAGTGTTTTTTGGT+TGG + chr3_1:81672798-81672817 Msa0380110:CDS 35.0%
!!! CCAATGAGTGTTTTTTGGTT+GGG + chr3_1:81672799-81672818 Msa0380110:CDS 35.0%
GCAGACATGTTTACACTTAT+TGG + chr3_1:81672847-81672866 Msa0380110:CDS 35.0%
CACTTAGTACAGCAATTTCT+TGG + chr3_1:81672914-81672933 Msa0380110:CDS 35.0%
!! TTTACTTGGTTTGTGCTTCT+TGG + chr3_1:81673091-81673110 Msa0380110:CDS 35.0%
CTTACTTCATCCACAACTTG+CGG + chr3_1:81670085-81670104 Msa0380110:five_prime_UTR 40.0%
TTCTAAGCAGACAATTCGGT+TGG - chr3_1:81670347-81670366 None:intergenic 40.0%
AAGTATGGCTACACAACCAA+GGG + chr3_1:81670408-81670427 Msa0380110:CDS 40.0%
CCATAGCTGCATCCAAAAAT+TGG - chr3_1:81670562-81670581 None:intergenic 40.0%
!! CCAATTTTTGGATGCAGCTA+TGG + chr3_1:81670559-81670578 Msa0380110:intron 40.0%
! TTTTTGGATGCAGCTATGGA+AGG + chr3_1:81670563-81670582 Msa0380110:intron 40.0%
! TTTTGGATGCAGCTATGGAA+GGG + chr3_1:81670564-81670583 Msa0380110:intron 40.0%
TATGGAAGGGTTAGAGAACA+TGG + chr3_1:81670577-81670596 Msa0380110:CDS 40.0%
!! CAGTTCCCATTAAGTTGGTT+AGG - chr3_1:81670682-81670701 None:intergenic 40.0%
!!! GCTTTTTTACTACCACTCCT+AGG + chr3_1:81670701-81670720 Msa0380110:CDS 40.0%
! TTTTTACTACCACTCCTAGG+TGG + chr3_1:81670704-81670723 Msa0380110:CDS 40.0%
GAAATTAATCCACCTAGGAG+TGG - chr3_1:81670716-81670735 None:intergenic 40.0%
TTGTGTTCTGTTTGCATGCA+TGG + chr3_1:81670763-81670782 Msa0380110:CDS 40.0%
GTTTGCATGCATGGAATTGT+TGG + chr3_1:81670772-81670791 Msa0380110:CDS 40.0%
CTCCTACATTACCAACCATA+GGG - chr3_1:81671055-81671074 None:intergenic 40.0%
AACCAATGTGAACCTGCTAA+TGG + chr3_1:81671637-81671656 Msa0380110:CDS 40.0%
TTCCATTAGCAGGTTCACAT+TGG - chr3_1:81671642-81671661 None:intergenic 40.0%
ATCAAATTGGTCAGCTCCTA+AGG - chr3_1:81671740-81671759 None:intergenic 40.0%
CAAATATTGCTCCTGTGGTA+AGG - chr3_1:81671822-81671841 None:intergenic 40.0%
CTTACCACAGGAGCAATATT+TGG + chr3_1:81671820-81671839 Msa0380110:CDS 40.0%
AACACCAAATATTGCTCCTG+TGG - chr3_1:81671827-81671846 None:intergenic 40.0%
CTAATTAGAGGACTTCCCTT+TGG - chr3_1:81671973-81671992 None:intergenic 40.0%
! GTTGAACTTTCAGGTGTTTG+TGG + chr3_1:81672092-81672111 Msa0380110:intron 40.0%
TGCATTTCTTCTGCATTCTC+CGG - chr3_1:81672147-81672166 None:intergenic 40.0%
TTCTTAGATAGAGCAGCAGT+TGG + chr3_1:81672349-81672368 Msa0380110:CDS 40.0%
! TTATTGGTAGCATTCGGACT+AGG - chr3_1:81672435-81672454 None:intergenic 40.0%
CATACAACAAAGCACAACCT+TGG + chr3_1:81672507-81672526 Msa0380110:CDS 40.0%
AACCTTGGACACAAACATCT+TGG + chr3_1:81672522-81672541 Msa0380110:CDS 40.0%
ACCTTGGACACAAACATCTT+GGG + chr3_1:81672523-81672542 Msa0380110:CDS 40.0%
ATCTTGGGATTCAAAATGCC+AGG + chr3_1:81672538-81672557 Msa0380110:CDS 40.0%
ACAAAAACTCGGTCGTATAG+AGG - chr3_1:81672610-81672629 None:intergenic 40.0%
GAATAAGCGGGACAAAAACT+CGG - chr3_1:81672621-81672640 None:intergenic 40.0%
CTGTGATTCTTCGAATAAGC+GGG - chr3_1:81672633-81672652 None:intergenic 40.0%
CCTGTGATTCTTCGAATAAG+CGG - chr3_1:81672634-81672653 None:intergenic 40.0%
ATCCGACACCTTCAAAGAAT+TGG + chr3_1:81672667-81672686 Msa0380110:CDS 40.0%
CCCAACCAAAAAACACTCAT+TGG - chr3_1:81672802-81672821 None:intergenic 40.0%
TTCTATGCAGAAAGTTCAGC+TGG + chr3_1:81672883-81672902 Msa0380110:CDS 40.0%
!! TCTTGGTGTTCTGTTGCATT+TGG + chr3_1:81672931-81672950 Msa0380110:CDS 40.0%
! TGGTTACTTTACAAGCACAG+TGG + chr3_1:81672951-81672970 Msa0380110:CDS 40.0%
GAGGTAGTTAACAAAGTGAG+TGG + chr3_1:81672979-81672998 Msa0380110:CDS 40.0%
GTAGTTAACAAAGTGAGTGG+TGG + chr3_1:81672982-81673001 Msa0380110:CDS 40.0%
TTAACAAAGTGAGTGGTGGT+TGG + chr3_1:81672986-81673005 Msa0380110:CDS 40.0%
GATAAATGTGCCGCAAGTTG+TGG - chr3_1:81670098-81670117 None:intergenic 45.0%
GAAGTATGGCTACACAACCA+AGG + chr3_1:81670407-81670426 Msa0380110:CDS 45.0%
! CCTAGTCTTCTTTGTACCCT+TGG - chr3_1:81670427-81670446 None:intergenic 45.0%
! CCAAGGGTACAAAGAAGACT+AGG + chr3_1:81670424-81670443 Msa0380110:CDS 45.0%
AGGGTACAAAGAAGACTAGG+AGG + chr3_1:81670427-81670446 Msa0380110:CDS 45.0%
TTGCATTTCACGGTACAGCA+AGG + chr3_1:81671019-81671038 Msa0380110:intron 45.0%
GCTCCTACATTACCAACCAT+AGG - chr3_1:81671056-81671075 None:intergenic 45.0%
!! TGGTTGGTAATGTAGGAGCT+AGG + chr3_1:81671057-81671076 Msa0380110:intron 45.0%
!! GGTTGGTAATGTAGGAGCTA+GGG + chr3_1:81671058-81671077 Msa0380110:intron 45.0%
GTACTTTCAGCATCATGACG+TGG + chr3_1:81671234-81671253 Msa0380110:intron 45.0%
GGAAACGTGCTTGAACTGTT+AGG - chr3_1:81671570-81671589 None:intergenic 45.0%
GAAAGTTGAGCTGCTTCCTT+TGG - chr3_1:81671772-81671791 None:intergenic 45.0%
CTTCTGCATTCTCCGGAATT+TGG - chr3_1:81672140-81672159 None:intergenic 45.0%
TTAGATAGAGCAGCAGTTGG+AGG + chr3_1:81672352-81672371 Msa0380110:CDS 45.0%
GAGGAAACAGTACAGGATCA+TGG + chr3_1:81672371-81672390 Msa0380110:CDS 45.0%
TCCCAAGATGTTTGTGTCCA+AGG - chr3_1:81672527-81672546 None:intergenic 45.0%
CAATAGAGGGATTACTGGGA+GGG - chr3_1:81672569-81672588 None:intergenic 45.0%
ACAATAGAGGGATTACTGGG+AGG - chr3_1:81672570-81672589 None:intergenic 45.0%
CTCGGTCGTATAGAGGAATT+AGG - chr3_1:81672603-81672622 None:intergenic 45.0%
CCGCTTATTCGAAGAATCAC+AGG + chr3_1:81672631-81672650 Msa0380110:CDS 45.0%
AGAATCACAGGAATCCCAAC+CGG + chr3_1:81672643-81672662 Msa0380110:CDS 45.0%
!! TCTTTGAAGGTGTCGGATTC+CGG - chr3_1:81672665-81672684 None:intergenic 45.0%
TACAAGCACAGTGGTTGTTG+AGG + chr3_1:81672960-81672979 Msa0380110:CDS 45.0%
ACAGTGGAAGACAAACACCT+AGG + chr3_1:81673126-81673145 Msa0380110:CDS 45.0%
CCATACTTCTGCAGATTCCC+TGG - chr3_1:81670396-81670415 None:intergenic 50.0%
CCAGGGAATCTGCAGAAGTA+TGG + chr3_1:81670393-81670412 Msa0380110:intron 50.0%
ACGGTACAGCAAGGTGAAGA+GGG + chr3_1:81671028-81671047 Msa0380110:intron 50.0%
!! GGCCCTATGGTTGGTAATGT+AGG + chr3_1:81671050-81671069 Msa0380110:intron 50.0%
AAGGCAGCTTTACCAGCCTT+AGG + chr3_1:81671721-81671740 Msa0380110:CDS 50.0%
AATTGGTCAGCTCCTAAGGC+TGG - chr3_1:81671736-81671755 None:intergenic 50.0%
GCAGTTGGAGGAAACAGTAC+AGG + chr3_1:81672364-81672383 Msa0380110:CDS 50.0%
CAAAGTGAGTGGTGGTTGGT+TGG + chr3_1:81672990-81673009 Msa0380110:CDS 50.0%
CACGGTACAGCAAGGTGAAG+AGG + chr3_1:81671027-81671046 Msa0380110:intron 55.0%
CGGTACAGCAAGGTGAAGAG+GGG + chr3_1:81671029-81671048 Msa0380110:intron 55.0%
GCAGCTTGGCTTCCATTAGC+AGG - chr3_1:81671652-81671671 None:intergenic 55.0%
AGAGGGATTACTGGGAGGGA+GGG - chr3_1:81672565-81672584 None:intergenic 55.0%
TAGAGGGATTACTGGGAGGG+AGG - chr3_1:81672566-81672585 None:intergenic 55.0%
!! GAAGGTGTCGGATTCCGGTT+GGG - chr3_1:81672660-81672679 None:intergenic 55.0%
!! TGAAGGTGTCGGATTCCGGT+TGG - chr3_1:81672661-81672680 None:intergenic 55.0%
CAAGGTGAAGAGGGGCCCTA+TGG + chr3_1:81671037-81671056 Msa0380110:intron 60.0%
GTGAAGAGGGGCCCTATGGT+TGG + chr3_1:81671041-81671060 Msa0380110:intron 60.0%
ATTACTGGGAGGGAGGGTCC+TGG - chr3_1:81672559-81672578 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 81669998 81673182 81669998 ID=Msa0380110;Name=Msa0380110
chr3_1 mRNA 81669998 81673182 81669998 ID=Msa0380110-mRNA-1;Parent=Msa0380110;Name=Msa0380110-mRNA-1;_AED=0.06;_eAED=0.06;_QI=200|1|0.83|1|0.8|0.66|6|0|568
chr3_1 exon 81669998 81670200 81669998 ID=Msa0380110-mRNA-1:exon:20746;Parent=Msa0380110-mRNA-1
chr3_1 exon 81670397 81670475 81670397 ID=Msa0380110-mRNA-1:exon:20747;Parent=Msa0380110-mRNA-1
chr3_1 exon 81670576 81670793 81670576 ID=Msa0380110-mRNA-1:exon:20748;Parent=Msa0380110-mRNA-1
chr3_1 exon 81671556 81672002 81671556 ID=Msa0380110-mRNA-1:exon:20749;Parent=Msa0380110-mRNA-1
chr3_1 exon 81672105 81672229 81672105 ID=Msa0380110-mRNA-1:exon:20750;Parent=Msa0380110-mRNA-1
chr3_1 exon 81672348 81673182 81672348 ID=Msa0380110-mRNA-1:exon:20751;Parent=Msa0380110-mRNA-1
chr3_1 five_prime_UTR 81669998 81670197 81669998 ID=Msa0380110-mRNA-1:five_prime_utr;Parent=Msa0380110-mRNA-1
chr3_1 CDS 81670198 81670200 81670198 ID=Msa0380110-mRNA-1:cds;Parent=Msa0380110-mRNA-1
chr3_1 CDS 81670397 81670475 81670397 ID=Msa0380110-mRNA-1:cds;Parent=Msa0380110-mRNA-1
chr3_1 CDS 81670576 81670793 81670576 ID=Msa0380110-mRNA-1:cds;Parent=Msa0380110-mRNA-1
chr3_1 CDS 81671556 81672002 81671556 ID=Msa0380110-mRNA-1:cds;Parent=Msa0380110-mRNA-1
chr3_1 CDS 81672105 81672229 81672105 ID=Msa0380110-mRNA-1:cds;Parent=Msa0380110-mRNA-1
chr3_1 CDS 81672348 81673182 81672348 ID=Msa0380110-mRNA-1:cds;Parent=Msa0380110-mRNA-1
Gene Sequence

>Msa0380110

ATGGGAATCTGCAGAAGTATGGCTACACAACCAAGGGTACAAAGAAGACTAGGAGGAAAAAGAGCTGCACTTTTTGTATATGCTATGGAAGGGTTAGAGAACATGGCTTTTGTTGCCAATGCAGTGAGCTTAATAACTTATTTCACTGGGTCCATGAACTTCAGCTTAACAAAATCAGCAACAACCCTAACCAACTTAATGGGAACTGCTTTTTTACTACCACTCCTAGGTGGATTAATTTCTGATACATATTTGTCTAGGTTCAAGACTTGTGTTCTGTTTGCATGCATGGAATTGTTGGGATATAGTATCCTAACAGTTCAAGCACGTTTCCAACAATTAAGACCAATTCCTTGCAAAGATATAGCACCAATTCATATGAACCAATGTGAACCTGCTAATGGAAGCCAAGCTGCTATACTTTATACAGGTCTATACCTTTTTGCATTAGGAACAAGTGGTGTTAAGGCAGCTTTACCAGCCTTAGGAGCTGACCAATTTGATGATAAAGATCCAAAGGAAGCAGCTCAACTTTCAAGCTTTTTTAATTGGTTTTTACTTAGCCTTACCACAGGAGCAATATTTGGTGTTACTTTCATTAATTGGATTAGTACTAATCAAGGATGGTATTGGAGTTTTACTGTATGCACTATAGCAGTCTTTCTCTCAATTCTCTCTATTTGCATGGGTAAGTCATTCTACAGAAACAATACTCCAAAGGGAAGTCCTCTAATTAGAATCATACAGGTGTTTGTGGCAGCCTTCAGAAACAGAAAACTCCAAATTCCGGAGAATGCAGAAGAAATGCATGAGATCCATGAAAAAGAAAGAGGAGACAGTTATGAAATCCTTAAAAGGACTGATCAATTCAGATTCTTAGATAGAGCAGCAGTTGGAGGAAACAGTACAGGATCATGGAATCTTTGCACAGTGACACAAGTAGAAGAAACAAAAATCCTAGTCCGAATGCTACCAATAATATTAAGCACAATATTTATGAACACATGTTTAGCACAGCTTCAAACTTTCAGCATACAACAAAGCACAACCTTGGACACAAACATCTTGGGATTCAAAATGCCAGGACCCTCCCTCCCAGTAATCCCTCTATTGTTCATGTTTGTCCTAATTCCTCTATACGACCGAGTTTTTGTCCCGCTTATTCGAAGAATCACAGGAATCCCAACCGGAATCCGACACCTTCAAAGAATTGGAATTGGATTGGTTCTATCAGCTATATCAATGTTAGTTGCTGGTTTTGTCGAAACACGTCGAAAATCTGTAGCCATAGAACATAATATGGTAGATAGCACTGAGCCTTTACCAATGAGTGTTTTTTGGTTGGGTTTTCAATATGCTATTTTTGGAGCTGCAGACATGTTTACACTTATTGGACTTCTAGAGTTTTTCTATGCAGAAAGTTCAGCTGGAATGAAGTCACTTAGTACAGCAATTTCTTGGTGTTCTGTTGCATTTGGTTACTTTACAAGCACAGTGGTTGTTGAGGTAGTTAACAAAGTGAGTGGTGGTTGGTTGGCTAGTAATAACTTGAATAGAGACAAGCTTAACTACTTTTATTGGTTATTGTCAATCATAAGTGTTGTAAACTTTGTATTTTACTTGGTTTGTGCTTCTTGGTATAGATACAAAACAGTGGAAGACAAACACCTAGGTGATTTAAATGATGTTGACATGGTTAAGGTTTAA

Protein sequence

>Msa0380110

MGICRSMATQPRVQRRLGGKRAALFVYAMEGLENMAFVANAVSLITYFTGSMNFSLTKSATTLTNLMGTAFLLPLLGGLISDTYLSRFKTCVLFACMELLGYSILTVQARFQQLRPIPCKDIAPIHMNQCEPANGSQAAILYTGLYLFALGTSGVKAALPALGADQFDDKDPKEAAQLSSFFNWFLLSLTTGAIFGVTFINWISTNQGWYWSFTVCTIAVFLSILSICMGKSFYRNNTPKGSPLIRIIQVFVAAFRNRKLQIPENAEEMHEIHEKERGDSYEILKRTDQFRFLDRAAVGGNSTGSWNLCTVTQVEETKILVRMLPIILSTIFMNTCLAQLQTFSIQQSTTLDTNILGFKMPGPSLPVIPLLFMFVLIPLYDRVFVPLIRRITGIPTGIRHLQRIGIGLVLSAISMLVAGFVETRRKSVAIEHNMVDSTEPLPMSVFWLGFQYAIFGAADMFTLIGLLEFFYAESSAGMKSLSTAISWCSVAFGYFTSTVVVEVVNKVSGGWLASNNLNRDKLNYFYWLLSIISVVNFVFYLVCASWYRYKTVEDKHLGDLNDVDMVKV*