AlfalfaGEDB | Msa0664660

M. sativa cultivar zhongmu-4 / Msa0664660

KEGG: -
GO: GO:0000160 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00847.23

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664660	XP_013454626.1	98.462	195	3	0	1	195	1	195	2.89e-143	407

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664660	sp\|Q94AW5\|ERF03_ARATH	63.542	192	53	3	1	192	1	175	2.32e-75	227

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664660	B0LL84	98.462	195	3	0	1	195	1	195	1.38e-143	407

TFs/TRs:

Gene ID	Type	Classification
Msa0664660	TF	AP2/ERF-ERF

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0664660	0.823021	1.733084e-53	-8.615850e-47
Msa0081020	Msa0664660	0.815291	9.965359e-52	-8.615850e-47
Msa0611210	Msa0664660	0.814872	1.234538e-51	-8.615850e-47
Msa0626450	Msa0664660	0.825111	5.601789e-54	-8.615850e-47
Msa0626490	Msa0664660	0.821448	4.015471e-53	-8.615850e-47
Msa0664600	Msa0664660	0.824990	5.980681e-54	-8.615850e-47
Msa0664660	Msa0664710	0.989728	2.186563e-179	-8.615850e-47
Msa0664660	Msa0706230	0.804577	2.020323e-49	-8.615850e-47
Msa0664660	Msa0709270	0.816234	6.143468e-52	-8.615850e-47
Msa0664660	Msa0729270	0.802760	4.814654e-49	-8.615850e-47
Msa0664660	Msa0741220	0.813279	2.774010e-51	-8.615850e-47
Msa0664660	Msa0829300	0.812205	4.766717e-51	-8.615850e-47
Msa0664660	Msa0829330	0.817111	3.905591e-52	-8.615850e-47
Msa0664660	Msa0967870	0.805865	1.086022e-49	-8.615850e-47
Msa0664660	Msa1023570	0.806407	8.350863e-50	-8.615850e-47
Msa0664660	Msa1044680	0.850534	1.596224e-60	-8.615850e-47
Msa0664660	Msa1105640	0.827585	1.442275e-54	-8.615850e-47
Msa0664660	Msa1155170	-0.800062	1.719239e-48	-8.615850e-47
Msa0664660	Msa1226460	0.815725	7.981065e-52	-8.615850e-47
Msa0664660	Msa1384460	0.800181	1.625531e-48	-8.615850e-47
Msa0664660	Msa1427100	0.805448	1.328175e-49	-8.615850e-47
Msa0664660	Msa1440960	0.813052	3.110431e-51	-8.615850e-47
Msa0664660	Msa1450100	0.805906	1.064401e-49	-8.615850e-47
Msa0174450	Msa0664660	0.802295	6.004669e-49	-8.615850e-47
Msa0208140	Msa0664660	0.817461	3.258461e-52	-8.615850e-47
Msa0225100	Msa0664660	0.823914	1.071878e-53	-8.615850e-47
Msa0231200	Msa0664660	0.805480	1.307893e-49	-8.615850e-47
Msa0435210	Msa0664660	0.819505	1.121007e-52	-8.615850e-47
Msa0244640	Msa0664660	0.834958	2.218029e-56	-8.615850e-47
Msa0266180	Msa0664660	0.815218	1.034797e-51	-8.615850e-47
Msa0283330	Msa0664660	0.811048	8.507824e-51	-8.615850e-47
Msa0287740	Msa0664660	0.813157	2.950364e-51	-8.615850e-47
Msa0290720	Msa0664660	0.811206	7.861328e-51	-8.615850e-47
Msa0321620	Msa0664660	0.815334	9.751521e-52	-8.615850e-47
Msa0323270	Msa0664660	0.811108	8.254790e-51	-8.615850e-47
Msa0519750	Msa0664660	0.814462	1.522065e-51	-8.615850e-47
Msa0519820	Msa0664660	0.812609	3.889203e-51	-8.615850e-47
Msa0519830	Msa0664660	0.829344	5.424598e-55	-8.615850e-47
Msa0530050	Msa0664660	0.929087	1.148091e-92	-8.615850e-47
Msa0586750	Msa0664660	0.927681	8.373936e-92	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664660	MtrunA17_Chr4g0002631	98.462	195	3	0	1	195	1	195	2.65e-147	407
Msa0664660	MtrunA17_Chr3g0137174	63.077	195	58	5	1	192	1	184	2.71e-67	204
Msa0664660	MtrunA17_Chr4g0003421	59.596	99	25	1	6	89	38	136	3.37e-34	121
Msa0664660	MtrunA17_Chr4g0063751	61.856	97	22	2	6	89	5	99	1.22e-33	119
Msa0664660	MtrunA17_Chr2g0333011	66.667	90	24	1	6	89	5	94	1.06e-32	115
Msa0664660	MtrunA17_Chr3g0099871	68.333	60	19	0	5	64	24	83	6.15e-24	94.4
Msa0664660	MtrunA17_Chr3g0115631	43.860	114	59	1	1	109	143	256	1.43e-23	95.5
Msa0664660	MtrunA17_Chr8g0383591	62.500	64	24	0	3	66	140	203	1.57e-23	95.1
Msa0664660	MtrunA17_Chr3g0137831	55.752	113	33	3	1	96	1	113	3.05e-23	92.0
Msa0664660	MtrunA17_Chr8g0382491	56.627	83	28	2	2	77	107	188	4.35e-23	93.6
Msa0664660	MtrunA17_Chr1g0149331	43.262	141	75	3	5	143	4	141	7.44e-23	90.9
Msa0664660	MtrunA17_Chr2g0316931	60.000	80	26	2	7	81	30	108	9.57e-23	90.9
Msa0664660	MtrunA17_Chr5g0425561	52.273	88	39	1	3	87	168	255	1.33e-22	93.2
Msa0664660	MtrunA17_Chr8g0375031	60.656	61	24	0	5	65	122	182	3.24e-22	89.7
Msa0664660	MtrunA17_Chr2g0282651	62.295	61	23	0	5	65	67	127	3.39e-22	90.5
Msa0664660	MtrunA17_Chr2g0334031	51.190	84	39	1	5	88	114	195	6.84e-22	91.3
Msa0664660	MtrunA17_Chr1g0196781	56.250	80	34	1	8	86	152	231	7.01e-22	90.5
Msa0664660	MtrunA17_Chr2g0323171	70.175	57	17	0	8	64	65	121	1.49e-21	87.0
Msa0664660	MtrunA17_Chr7g0257911	65.517	58	20	0	8	65	31	88	1.63e-21	89.4
Msa0664660	MtrunA17_Chr7g0252381	42.520	127	71	2	7	131	41	167	1.71e-21	89.0
Msa0664660	MtrunA17_Chr1g0150631	29.444	180	114	4	8	177	38	214	1.98e-21	87.8
Msa0664660	MtrunA17_Chr5g0437671	65.000	60	21	0	5	64	82	141	2.03e-21	90.5
Msa0664660	MtrunA17_Chr1g0150661	34.595	185	93	8	8	177	35	206	3.43e-21	87.0
Msa0664660	MtrunA17_Chr4g0044911	66.667	57	19	0	8	64	96	152	3.58e-21	87.4
Msa0664660	MtrunA17_Chr2g0324131	60.563	71	21	1	1	64	204	274	4.04e-21	89.7
Msa0664660	MtrunA17_Chr7g0221471	64.912	57	20	0	8	64	51	107	4.85e-21	85.5
Msa0664660	MtrunA17_Chr7g0221501	64.912	57	20	0	8	64	51	107	7.11e-21	85.1
Msa0664660	MtrunA17_Chr4g0044871	64.912	57	20	0	8	64	96	152	1.05e-20	85.9
Msa0664660	MtrunA17_Chr4g0044881	63.793	58	21	0	7	64	113	170	1.20e-20	85.9
Msa0664660	MtrunA17_Chr8g0344961	43.103	116	55	3	5	111	121	234	1.47e-20	87.8
Msa0664660	MtrunA17_Chr1g0195151	37.037	135	74	2	8	142	77	200	1.83e-20	86.7
Msa0664660	MtrunA17_Chr4g0044901	64.912	57	20	0	8	64	96	152	1.88e-20	85.5
Msa0664660	MtrunA17_Chr2g0295421	61.667	60	23	0	8	67	96	155	1.97e-20	85.9
Msa0664660	MtrunA17_Chr2g0282621	63.333	60	22	0	8	67	15	74	3.21e-20	83.2
Msa0664660	MtrunA17_Chr1g0150691	32.447	188	102	6	8	177	22	202	3.50e-20	84.3
Msa0664660	MtrunA17_Chr6g0453661	54.118	85	34	2	3	86	33	113	3.66e-20	87.0
Msa0664660	MtrunA17_Chr7g0217991	51.190	84	39	1	3	86	37	118	4.72e-20	87.0
Msa0664660	MtrunA17_Chr4g0023411	66.667	57	19	0	8	64	65	121	8.83e-20	82.8
Msa0664660	MtrunA17_Chr5g0437371	64.912	57	20	0	7	63	65	121	1.01e-19	85.1
Msa0664660	MtrunA17_Chr5g0396911	60.000	60	24	0	4	63	108	167	1.28e-19	84.3
Msa0664660	MtrunA17_Chr1g0150671	39.370	127	60	3	5	124	43	159	1.41e-19	84.0
Msa0664660	MtrunA17_Chr4g0042761	60.656	61	24	0	3	63	43	103	1.42e-19	84.3
Msa0664660	MtrunA17_Chr5g0401871	41.667	96	53	1	5	97	22	117	2.13e-19	81.3
Msa0664660	MtrunA17_Chr5g0412641	65.625	64	21	1	7	70	45	107	2.41e-19	84.3
Msa0664660	MtrunA17_Chr8g0367911	58.333	72	26	1	7	78	43	110	3.05e-19	83.2
Msa0664660	MtrunA17_Chr3g0126321	58.065	62	26	0	6	67	111	172	5.18e-19	83.2
Msa0664660	MtrunA17_Chr4g0062551	58.333	60	25	0	5	64	50	109	9.51e-19	78.6
Msa0664660	MtrunA17_Chr5g0438831	62.069	58	22	0	7	64	45	102	1.82e-18	80.9
Msa0664660	MtrunA17_Chr3g0134161	57.895	57	24	0	8	64	45	101	2.30e-18	78.6
Msa0664660	MtrunA17_Chr6g0486701	64.912	57	20	0	8	64	44	100	3.03e-18	79.3
Msa0664660	MtrunA17_Chr4g0062161	58.333	60	25	0	5	64	50	109	3.04e-18	79.0
Msa0664660	MtrunA17_Chr5g0399441	63.158	57	21	0	8	64	28	84	3.10e-18	78.2
Msa0664660	MtrunA17_Chr3g0140161	64.912	57	20	0	8	64	43	99	4.38e-18	78.2
Msa0664660	MtrunA17_Chr7g0275841	61.404	57	22	0	8	64	28	84	4.60e-18	77.8
Msa0664660	MtrunA17_Chr7g0243431	58.730	63	19	1	8	63	78	140	6.05e-18	80.9
Msa0664660	MtrunA17_Chr7g0232261	64.912	57	20	0	8	64	61	117	6.17e-18	78.6
Msa0664660	MtrunA17_Chr5g0438801	62.069	58	22	0	7	64	50	107	6.51e-18	79.3
Msa0664660	MtrunA17_Chr8g0350701	37.984	129	75	2	6	129	25	153	6.61e-18	79.7
Msa0664660	MtrunA17_Chr7g0253424	63.158	57	21	0	7	63	38	94	9.29e-18	79.0
Msa0664660	MtrunA17_Chr8g0340311	62.069	58	22	0	8	65	47	104	1.23e-17	77.4
Msa0664660	MtrunA17_Chr4g0017851	63.158	57	21	0	8	64	118	174	1.47e-17	79.0
Msa0664660	MtrunA17_Chr4g0055951	63.158	57	21	0	8	64	74	130	1.57e-17	78.2
Msa0664660	MtrunA17_Chr8g0387801	47.778	90	45	1	6	93	105	194	1.58e-17	79.0
Msa0664660	MtrunA17_Chr5g0432821	51.562	64	31	0	1	64	117	180	1.93e-17	78.2
Msa0664660	MtrunA17_Chr4g0055761	59.375	64	25	1	6	68	143	206	2.31e-17	77.8
Msa0664660	MtrunA17_Chr8g0335311	59.016	61	24	1	6	65	94	154	2.61e-17	76.3
Msa0664660	MtrunA17_Chr8g0390091	64.912	57	20	0	8	64	37	93	2.97e-17	77.0
Msa0664660	MtrunA17_Chr8g0378811	42.453	106	52	2	1	97	48	153	3.40e-17	77.4
Msa0664660	MtrunA17_Chr2g0301191	55.000	60	27	0	8	67	19	78	4.50e-17	75.9
Msa0664660	MtrunA17_Chr6g0461271	59.322	59	24	0	5	63	30	88	5.70e-17	77.4
Msa0664660	MtrunA17_Chr4g0066931	59.322	59	24	0	7	65	52	110	6.06e-17	77.4
Msa0664660	MtrunA17_Chr4g0055781	53.521	71	32	1	5	74	99	169	6.88e-17	76.3
Msa0664660	MtrunA17_Chr8g0346741	59.649	57	23	0	8	64	39	95	7.86e-17	74.7
Msa0664660	MtrunA17_Chr2g0286161	34.559	136	76	3	7	142	49	171	8.32e-17	76.6
Msa0664660	MtrunA17_Chr1g0153151	56.140	57	25	0	8	64	44	100	8.71e-17	74.3
Msa0664660	MtrunA17_Chr1g0189941	57.143	56	24	0	8	63	24	79	8.71e-17	73.9
Msa0664660	MtrunA17_Chr4g0055801	58.462	65	26	1	5	68	151	215	9.75e-17	76.6
Msa0664660	MtrunA17_Chr1g0184081	60.000	60	23	1	7	65	20	79	1.02e-16	73.6
Msa0664660	MtrunA17_Chr2g0331231	61.404	57	22	0	8	64	41	97	1.03e-16	74.7
Msa0664660	MtrunA17_Chr4g0046161	55.556	63	27	1	5	66	54	116	1.08e-16	72.8
Msa0664660	MtrunA17_Chr8g0334801	61.404	57	22	0	8	64	52	108	1.34e-16	74.7
Msa0664660	MtrunA17_Chr1g0170531	56.452	62	26	1	6	66	87	148	1.98e-16	74.7
Msa0664660	MtrunA17_Chr7g0265851	52.564	78	31	1	8	85	24	95	2.34e-16	73.9
Msa0664660	MtrunA17_Chr2g0301171	53.333	60	28	0	8	67	19	78	3.53e-16	73.2
Msa0664660	MtrunA17_Chr1g0200931	53.846	65	29	1	2	65	17	81	4.64e-16	71.6
Msa0664660	MtrunA17_Chr8g0335331	57.627	59	24	1	8	65	125	183	6.49e-16	72.8
Msa0664660	MtrunA17_Chr1g0186731	59.322	59	23	1	7	64	20	78	9.08e-16	70.9
Msa0664660	MtrunA17_Chr1g0158971	55.932	59	26	0	5	63	112	170	1.05e-15	73.9
Msa0664660	MtrunA17_Chr2g0283171	55.738	61	26	1	5	64	60	120	1.51e-15	70.5
Msa0664660	MtrunA17_Chr3g0136551	49.180	61	31	0	3	63	60	120	2.54e-15	72.4
Msa0664660	MtrunA17_Chr2g0283181	55.556	63	27	1	3	64	144	206	2.98e-15	72.4
Msa0664660	MtrunA17_Chr7g0250731	54.098	61	27	1	6	65	59	119	3.68e-15	70.9
Msa0664660	MtrunA17_Chr2g0301181	51.667	60	29	0	8	67	19	78	4.33e-15	70.9
Msa0664660	MtrunA17_Chr7g0250711	54.098	61	27	1	6	65	58	118	5.87e-15	70.1
Msa0664660	MtrunA17_Chr7g0250721	54.098	61	27	1	6	65	59	119	6.07e-15	70.1
Msa0664660	MtrunA17_Chr1g0196871	58.621	58	23	1	8	64	16	73	8.22e-15	67.0
Msa0664660	MtrunA17_Chr8g0335321	52.459	61	28	1	6	65	94	154	9.71e-15	69.7
Msa0664660	MtrunA17_Chr2g0297331	59.322	59	23	1	7	64	13	71	1.67e-14	67.4
Msa0664660	MtrunA17_Chr7g0225131	55.000	60	24	1	8	67	29	85	2.51e-14	65.9
Msa0664660	MtrunA17_Chr7g0261151	57.377	61	25	1	5	64	17	77	2.67e-14	67.0
Msa0664660	MtrunA17_Chr7g0261101	53.731	67	30	1	7	72	19	85	4.00e-14	66.6
Msa0664660	MtrunA17_Chr4g0026881	55.172	58	25	1	8	64	97	154	4.33e-14	68.6
Msa0664660	MtrunA17_Chr1g0186671	59.322	59	23	1	7	64	18	76	4.81e-14	66.2
Msa0664660	MtrunA17_Chr6g0473961	60.714	56	22	0	8	63	54	109	5.33e-14	67.8
Msa0664660	MtrunA17_Chr5g0396191	68.421	57	18	0	8	64	11	67	5.84e-14	67.0
Msa0664660	MtrunA17_Chr6g0473861	60.714	56	22	0	8	63	63	118	6.53e-14	68.6
Msa0664660	MtrunA17_Chr1g0184061	51.613	62	29	1	5	65	74	135	7.51e-14	67.4
Msa0664660	MtrunA17_Chr1g0203861	60.714	56	22	0	8	63	44	99	7.87e-14	67.0
Msa0664660	MtrunA17_Chr1g0205961	56.863	51	21	1	3	53	110	159	8.45e-14	68.6
Msa0664660	MtrunA17_Chr6g0473941	60.714	56	22	0	8	63	33	88	8.77e-14	67.0
Msa0664660	MtrunA17_Chr6g0473931	60.714	56	22	0	8	63	33	88	1.26e-13	66.2
Msa0664660	MtrunA17_Chr6g0473881	58.929	56	23	0	8	63	110	165	1.32e-13	67.8
Msa0664660	MtrunA17_Chr6g0473971	58.929	56	23	0	8	63	54	109	1.45e-13	67.0
Msa0664660	MtrunA17_Chr6g0473741	58.929	56	23	0	8	63	66	121	1.76e-13	66.6
Msa0664660	MtrunA17_Chr6g0473781	58.929	56	23	0	8	63	57	112	2.76e-13	65.9
Msa0664660	MtrunA17_Chr1g0146191	65.517	58	20	0	8	65	47	104	2.87e-13	66.2
Msa0664660	MtrunA17_Chr6g0473981	58.929	56	23	0	8	63	54	109	3.66e-13	65.9
Msa0664660	MtrunA17_Chr3g0129421	64.516	62	22	0	5	66	167	228	3.77e-13	67.0
Msa0664660	MtrunA17_Chr3g0136541	51.724	58	28	0	10	67	42	99	4.21e-13	65.9
Msa0664660	MtrunA17_Chr1g0183961	58.333	72	29	1	5	75	24	95	5.61e-13	63.5
Msa0664660	MtrunA17_Chr1g0183981	53.333	60	27	1	5	63	72	131	8.19e-13	64.7
Msa0664660	MtrunA17_Chr6g0474001	57.143	56	24	0	8	63	54	109	1.06e-12	65.1
Msa0664660	MtrunA17_Chr1g0155751	56.250	64	28	0	8	71	39	102	1.11e-12	64.7
Msa0664660	MtrunA17_Chr1g0186681	53.333	60	26	1	7	64	18	77	1.23e-12	62.4
Msa0664660	MtrunA17_Chr6g0486711	66.667	57	19	0	8	64	49	105	1.24e-12	64.3
Msa0664660	MtrunA17_Chr8g0345531	57.447	47	19	1	7	53	115	160	1.58e-12	65.1
Msa0664660	MtrunA17_Chr1g0184031	54.386	57	25	1	8	63	84	140	2.61e-12	63.2
Msa0664660	MtrunA17_Chr5g0396301	47.541	61	30	1	6	64	16	76	2.61e-12	62.0
Msa0664660	MtrunA17_Chr3g0131601	66.667	57	19	0	8	64	76	132	3.75e-12	63.2
Msa0664660	MtrunA17_Chr1g0209891	57.447	47	19	1	7	53	53	98	4.67e-12	63.5
Msa0664660	MtrunA17_Chr4g0026931	54.386	57	25	1	9	64	132	188	4.91e-12	63.2
Msa0664660	MtrunA17_Chr1g0184011	54.545	55	24	1	10	63	86	140	5.98e-12	62.4
Msa0664660	MtrunA17_Chr7g0261181	53.086	81	28	2	5	75	10	90	6.76e-12	60.1
Msa0664660	MtrunA17_Chr5g0438841	42.308	78	41	1	7	84	15	88	6.87e-12	61.2
Msa0664660	MtrunA17_Chr6g0473791	63.636	44	16	0	8	51	57	100	7.42e-12	60.5
Msa0664660	MtrunA17_Chr1g0184071	50.000	62	30	1	3	63	64	125	7.67e-12	61.2
Msa0664660	MtrunA17_Chr8g0345551	58.537	41	17	0	8	48	117	157	1.66e-11	62.0
Msa0664660	MtrunA17_Chr6g0473771	53.571	56	26	0	8	63	43	98	1.68e-11	58.9
Msa0664660	MtrunA17_Chr4g0057241	54.386	57	25	1	8	64	15	70	1.95e-11	60.1
Msa0664660	MtrunA17_Chr3g0142081	55.738	61	27	0	4	64	35	95	1.96e-11	60.8
Msa0664660	MtrunA17_Chr3g0114761	54.930	71	28	1	5	75	22	88	2.52e-11	60.5
Msa0664660	MtrunA17_Chr5g0423811	42.254	71	33	1	1	63	81	151	3.94e-11	60.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0664660	AT5G25190.1	63.542	192	53	3	1	192	1	175	2.36e-76	227
Msa0664660	AT1G15360.1	73.913	69	18	0	6	74	5	73	1.60e-32	116
Msa0664660	AT1G15360.2	73.913	69	18	0	6	74	5	73	1.60e-32	116
Msa0664660	AT5G25390.2	41.451	193	80	9	6	184	5	178	3.07e-30	110
Msa0664660	AT5G25390.1	40.415	193	79	10	6	184	5	175	8.11e-27	101
Msa0664660	AT5G65130.2	40.373	161	69	7	3	152	108	252	2.83e-25	99.4
Msa0664660	AT5G65130.1	40.373	161	69	7	3	152	106	250	2.85e-25	99.4
Msa0664660	AT3G20310.1	55.294	85	34	1	5	89	24	104	1.30e-23	94.4
Msa0664660	AT1G22190.1	65.079	63	22	0	2	64	77	139	4.06e-23	93.2
Msa0664660	AT5G11190.1	35.106	188	109	3	6	184	5	188	1.19e-22	90.5
Msa0664660	AT1G78080.1	41.406	128	69	3	2	123	146	273	1.30e-22	93.2
Msa0664660	AT3G15210.1	68.966	58	18	0	7	64	24	81	2.65e-22	90.5
Msa0664660	AT1G36060.1	62.500	64	24	0	1	64	136	199	2.72e-22	92.0
Msa0664660	AT4G13620.1	55.696	79	35	0	4	82	228	306	1.14e-21	91.3
Msa0664660	AT4G39780.1	66.667	60	20	0	5	64	90	149	1.33e-21	89.7
Msa0664660	AT5G44210.1	45.098	102	51	2	3	104	28	124	1.38e-21	87.8
Msa0664660	AT1G50640.1	63.333	60	22	0	7	66	27	86	1.55e-21	88.6
Msa0664660	AT2G22200.1	61.905	63	24	0	2	64	65	127	1.85e-21	89.0
Msa0664660	AT5G13910.1	37.778	135	74	2	7	131	19	153	2.08e-21	87.8
Msa0664660	AT5G13330.1	56.164	73	31	1	4	75	34	106	3.31e-21	87.4
Msa0664660	AT1G72360.1	50.000	72	36	0	7	78	24	95	6.77e-21	86.3
Msa0664660	AT1G72360.2	50.000	72	36	0	7	78	75	146	1.52e-20	86.7
Msa0664660	AT5G05410.2	66.667	57	19	0	8	64	79	135	1.53e-20	87.4
Msa0664660	AT1G28370.1	60.938	64	24	1	7	69	19	82	1.62e-20	84.3
Msa0664660	AT1G72360.3	50.000	72	36	0	7	78	73	144	1.63e-20	86.3
Msa0664660	AT1G28370.2	60.938	64	24	1	7	69	57	120	1.87e-20	85.1
Msa0664660	AT5G05410.1	66.667	57	19	0	8	64	79	135	2.17e-20	87.4
Msa0664660	AT1G21910.1	66.667	57	19	0	8	64	50	106	2.52e-20	85.5
Msa0664660	AT4G06746.1	56.667	60	26	0	5	64	33	92	3.15e-20	83.2
Msa0664660	AT2G20880.1	66.667	57	19	0	8	64	187	243	3.98e-20	86.7
Msa0664660	AT3G11020.1	68.421	57	18	0	8	64	78	134	5.28e-20	86.3
Msa0664660	AT5G61890.1	63.333	60	22	0	5	64	87	146	5.44e-20	84.7
Msa0664660	AT1G24590.1	69.492	59	18	0	7	65	57	115	5.44e-20	85.9
Msa0664660	AT1G28360.1	64.912	57	20	0	8	64	12	68	6.34e-20	83.2
Msa0664660	AT4G27950.1	60.317	63	25	0	5	67	115	177	7.30e-20	85.9
Msa0664660	AT5G67190.1	36.134	119	71	1	8	126	21	134	9.34e-20	82.8
Msa0664660	AT1G12980.1	66.102	59	20	0	7	65	56	114	1.31e-19	85.1
Msa0664660	AT1G03800.1	60.000	60	24	0	5	64	50	109	1.64e-19	83.6
Msa0664660	AT2G47520.1	61.404	57	22	0	8	64	50	106	1.81e-19	81.6
Msa0664660	AT4G23750.2	54.688	64	29	0	5	68	119	182	2.42e-19	84.3
Msa0664660	AT4G23750.1	54.688	64	29	0	5	68	119	182	2.42e-19	84.3
Msa0664660	AT2G33710.1	61.667	60	23	0	5	64	67	126	2.93e-19	82.4
Msa0664660	AT5G21960.1	59.016	61	25	0	7	67	6	66	2.94e-19	82.0
Msa0664660	AT2G33710.2	61.667	60	23	0	5	64	67	126	3.88e-19	82.0
Msa0664660	AT4G11140.1	56.452	62	27	0	6	67	85	146	3.89e-19	83.2
Msa0664660	AT1G19210.1	55.556	63	28	0	5	67	9	71	4.31e-19	80.9
Msa0664660	AT3G61630.1	61.905	63	24	0	6	68	103	165	4.92e-19	83.2
Msa0664660	AT1G71450.1	66.667	57	19	0	8	64	24	80	5.85e-19	80.5
Msa0664660	AT1G74930.1	52.000	75	34	1	5	79	18	90	9.89e-19	80.5
Msa0664660	AT5G53290.1	62.069	58	22	0	6	63	123	180	1.15e-18	82.8
Msa0664660	AT2G40340.2	50.633	79	36	1	8	86	14	89	1.36e-18	81.6
Msa0664660	AT2G40340.5	50.633	79	36	1	8	86	14	89	1.36e-18	81.6
Msa0664660	AT2G40340.4	50.633	79	36	1	8	86	14	89	1.36e-18	81.6
Msa0664660	AT2G23340.1	42.857	91	52	0	8	98	28	118	1.50e-18	79.3
Msa0664660	AT1G12890.1	35.354	198	96	8	7	182	20	207	2.08e-18	80.1
Msa0664660	AT2G35700.1	56.944	72	28	1	8	76	45	116	2.15e-18	79.3
Msa0664660	AT4G36900.1	57.895	57	24	0	8	64	30	86	2.17e-18	79.3
Msa0664660	AT1G75490.1	59.649	57	23	0	8	64	42	98	2.53e-18	79.3
Msa0664660	AT3G16280.1	66.667	57	19	0	8	64	61	117	2.69e-18	80.1
Msa0664660	AT4G32800.1	63.333	60	22	0	5	64	16	75	2.72e-18	79.7
Msa0664660	AT3G16770.1	59.649	57	23	0	8	64	79	135	3.09e-18	80.1
Msa0664660	AT3G16280.2	66.667	57	19	0	8	64	79	135	3.29e-18	80.1
Msa0664660	AT2G40340.3	50.633	79	36	1	8	86	72	147	3.61e-18	80.9
Msa0664660	AT2G40340.1	50.633	79	36	1	8	86	72	147	3.79e-18	81.3
Msa0664660	AT4G16750.1	61.667	60	23	0	5	64	37	96	3.93e-18	78.6
Msa0664660	AT2G40340.6	50.633	79	36	1	8	86	79	154	4.43e-18	80.9
Msa0664660	AT3G57600.1	59.322	59	24	0	7	65	27	85	7.98e-18	79.3
Msa0664660	AT4G28140.1	61.404	57	22	0	8	64	143	199	9.11e-18	79.7
Msa0664660	AT1G28160.1	53.425	73	34	0	7	79	38	110	1.01e-17	78.6
Msa0664660	AT2G44940.1	64.912	57	20	0	8	64	100	156	1.09e-17	79.3
Msa0664660	AT5G11590.1	51.724	87	36	2	8	91	51	134	1.27e-17	78.2
Msa0664660	AT1G22985.1	59.677	62	22	1	5	63	72	133	1.67e-17	76.3
Msa0664660	AT5G25810.1	63.158	57	21	0	8	64	36	92	1.84e-17	77.4
Msa0664660	AT5G19790.1	57.143	70	29	1	5	73	19	88	1.88e-17	78.2
Msa0664660	AT1G46768.1	56.140	57	25	0	8	64	31	87	2.18e-17	75.9
Msa0664660	AT1G46768.2	56.140	57	25	0	8	64	31	87	2.18e-17	75.9
Msa0664660	AT5G18560.1	59.016	61	25	0	7	67	54	114	2.18e-17	79.0
Msa0664660	AT1G46768.3	56.140	57	25	0	8	64	31	87	2.19e-17	75.5
Msa0664660	AT2G25820.1	64.912	57	20	0	8	64	26	82	2.47e-17	77.4
Msa0664660	AT1G01250.1	61.404	57	22	0	8	64	45	101	3.32e-17	76.3
Msa0664660	AT5G47220.1	52.000	75	35	1	6	79	115	189	3.98e-17	77.0
Msa0664660	AT4G17500.1	59.375	64	25	1	6	68	146	209	4.89e-17	77.4
Msa0664660	AT3G50260.1	44.872	78	41	1	8	85	21	96	5.34e-17	74.7
Msa0664660	AT4G25470.1	48.936	94	40	3	8	93	51	144	6.99e-17	75.9
Msa0664660	AT3G60490.1	63.158	57	21	0	8	64	71	127	7.02e-17	76.6
Msa0664660	AT4G31060.1	40.367	109	58	2	8	109	27	135	9.59e-17	74.7
Msa0664660	AT2G46310.1	54.545	66	30	0	7	72	98	163	1.15e-16	76.6
Msa0664660	AT5G47230.1	59.016	61	24	1	5	64	153	213	2.60e-16	75.5
Msa0664660	AT1G71130.1	53.731	67	26	1	2	63	73	139	2.64e-16	73.2
Msa0664660	AT4G25490.1	66.071	56	19	0	8	63	48	103	3.14e-16	73.9
Msa0664660	AT5G18450.1	56.897	58	25	0	8	65	34	91	3.35e-16	75.5
Msa0664660	AT2G40350.2	53.333	60	28	0	8	67	74	133	5.01e-16	72.4
Msa0664660	AT2G40350.1	53.333	60	28	0	8	67	67	126	5.97e-16	72.0
Msa0664660	AT5G51190.1	57.377	61	25	1	5	64	69	129	6.53e-16	73.6
Msa0664660	AT5G43410.1	55.556	63	27	1	7	68	14	76	7.11e-16	71.2
Msa0664660	AT2G44840.1	54.545	66	26	2	4	65	85	150	7.52e-16	73.2
Msa0664660	AT3G23230.1	59.016	61	24	1	5	64	17	77	9.85e-16	70.9
Msa0664660	AT4G17490.1	56.250	64	27	1	2	64	131	194	1.36e-15	73.6
Msa0664660	AT5G07580.1	45.977	87	43	2	6	88	108	194	1.50e-15	72.0
Msa0664660	AT1G68550.1	61.702	47	18	0	2	48	107	153	3.24e-15	72.8
Msa0664660	AT1G68550.2	61.702	47	18	0	2	48	107	153	3.24e-15	72.8
Msa0664660	AT4G25480.1	62.500	56	21	0	8	63	51	106	4.10e-15	71.2
Msa0664660	AT2G38340.1	48.235	85	36	1	4	80	66	150	5.62e-15	71.2
Msa0664660	AT5G61600.1	54.839	62	27	1	6	66	86	147	1.54e-14	70.1
Msa0664660	AT5G64750.1	61.111	54	21	0	13	66	190	243	2.25e-14	70.9
Msa0664660	AT1G22810.1	48.529	68	31	2	5	68	11	78	2.63e-14	67.4
Msa0664660	AT5G51990.1	60.714	56	22	0	8	63	54	109	4.69e-14	68.6
Msa0664660	AT2G36450.1	60.345	58	22	1	8	64	15	72	4.95e-14	67.8
Msa0664660	AT1G71520.1	47.692	65	30	1	5	65	11	75	5.58e-14	66.6
Msa0664660	AT4G34410.1	67.241	58	19	0	8	65	136	193	8.64e-14	68.2
Msa0664660	AT5G07310.1	61.667	60	23	0	5	64	89	148	1.02e-13	68.2
Msa0664660	AT1G43160.1	63.636	66	23	1	1	66	55	119	1.05e-13	67.0
Msa0664660	AT1G77640.1	64.407	59	21	0	6	64	41	99	1.11e-13	67.8
Msa0664660	AT3G23240.1	51.613	62	29	1	3	63	77	138	2.34e-13	66.2
Msa0664660	AT3G14230.2	43.478	138	68	5	5	136	121	254	3.96e-13	67.4
Msa0664660	AT3G14230.3	43.478	138	68	5	5	136	120	253	4.03e-13	67.4
Msa0664660	AT3G14230.1	43.478	138	68	5	5	136	125	258	4.04e-13	67.4
Msa0664660	AT4G18450.1	55.000	60	25	2	6	63	108	167	8.35e-13	65.9
Msa0664660	AT1G53170.1	48.889	90	46	0	7	96	30	119	9.22e-13	64.3
Msa0664660	AT3G25890.1	68.421	38	12	0	10	47	133	170	9.66e-13	65.9
Msa0664660	AT3G25890.2	68.421	38	12	0	10	47	133	170	9.66e-13	65.9
Msa0664660	AT2G31230.1	50.820	61	29	1	5	64	83	143	1.58e-12	64.7
Msa0664660	AT1G77200.1	58.904	73	25	2	8	76	43	114	2.86e-12	63.9
Msa0664660	AT5G50080.2	65.000	60	21	0	5	64	83	142	3.10e-12	63.5
Msa0664660	AT5G50080.1	65.000	60	21	0	5	64	74	133	3.43e-12	63.2
Msa0664660	AT2G40220.1	66.667	57	19	0	7	63	54	110	4.07e-12	64.3
Msa0664660	AT1G33760.1	53.750	80	34	1	5	81	17	96	4.87e-12	62.4
Msa0664660	AT1G53910.1	63.333	60	22	0	5	64	122	181	4.89e-12	63.9
Msa0664660	AT1G53910.2	63.333	60	22	0	5	64	122	181	4.89e-12	63.9
Msa0664660	AT1G53910.3	63.333	60	22	0	5	64	120	179	5.00e-12	63.9
Msa0664660	AT1G63030.2	50.000	56	28	0	8	63	30	85	3.89e-11	59.7
Msa0664660	AT1G63030.1	50.000	56	28	0	8	63	30	85	3.89e-11	59.7
Msa0664660	AT1G64380.1	57.812	64	27	0	1	64	129	192	3.97e-11	61.2
Msa0664660	AT1G12610.1	50.000	56	28	0	8	63	30	85	9.46e-11	59.3

Find 55 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGTATAAGGTTTAGTAATTT+TGG	0.100391	4_4:+3728916	Msa0664660:three_prime_UTR
ATTCAAGAGTTGCTTGATTA+TGG	0.233710	4_4:+3728682	Msa0664660:CDS
ATTTGGGTTGTATGGGAAAT+TGG	0.249663	4_4:-3728332	None:intergenic
GGGAAATTGGTACGTGCTTT+TGG	0.268347	4_4:-3728319	None:intergenic
GCCAAAGACATTGGGGTTCT+TGG	0.280569	4_4:+3727423	Msa0664660:CDS
TTTGAGAGAGTGTGGTAGTA+TGG	0.288696	4_4:+3728869	Msa0664660:three_prime_UTR
TCACCTGTAATAAATGTATA+AGG	0.291811	4_4:+3728902	Msa0664660:three_prime_UTR
AAACCTTATACATTTATTAC+AGG	0.295968	4_4:-3728905	None:intergenic
GTGAAACTAGTTTAATTAGA+TGG	0.328749	4_4:+3728560	Msa0664660:CDS
GAAGAAGATTGTGGTCCATT+TGG	0.328768	4_4:-3728349	None:intergenic
GGGAAAGTGAATTACAATAA+AGG	0.337369	4_4:-3727464	None:intergenic
CCCAAGAACCCCAATGTCTT+TGG	0.344960	4_4:-3727424	None:intergenic
ACTATAGGAAGACAAGAATA+TGG	0.348463	4_4:+3728227	Msa0664660:intron
ACTACCACACTCTCTCAAAA+AGG	0.349460	4_4:-3728865	None:intergenic
TGTGGTCCATTTGGGTTGTA+TGG	0.370819	4_4:-3728340	None:intergenic
TTGAGAGAGTGTGGTAGTAT+GGG	0.380707	4_4:+3728870	Msa0664660:three_prime_UTR
AATAATTGTGTTGGGTTTGA+AGG	0.386713	4_4:+3728595	Msa0664660:CDS
TTGTGGTGGTTGTTGTTGTT+TGG	0.389253	4_4:-3728446	None:intergenic
CCAAAGACATTGGGGTTCTT+GGG	0.406444	4_4:+3727424	Msa0664660:CDS
TCAATTGAGCTTTGTTCTGT+TGG	0.406867	4_4:+3728706	Msa0664660:CDS
ATGTGATCATCTTCAAGAAC+AGG	0.413352	4_4:-3728649	None:intergenic
AGGTGTACGCCAAAGACATT+GGG	0.415032	4_4:+3727415	Msa0664660:CDS
AAGAAGATTGTGGTCCATTT+GGG	0.419292	4_4:-3728348	None:intergenic
GGAAAGTGAATTACAATAAA+GGG	0.420688	4_4:-3727463	None:intergenic
TCTCAGTGACTCTTCGTACC+AGG	0.454389	4_4:-3728784	None:intergenic
TTAATTAGATGGCTTGATGA+AGG	0.455274	4_4:+3728571	Msa0664660:CDS
TTATTGTGTGTTTGTTTCCA+CGG	0.500551	4_4:+3728955	Msa0664660:three_prime_UTR
ATGAAGGGAATAATTGTGTT+GGG	0.501184	4_4:+3728587	Msa0664660:CDS
AATTTCCCATACAACCCAAA+TGG	0.503068	4_4:+3728334	Msa0664660:CDS
AGGAAGACAAGAATATGGTT+AGG	0.513155	4_4:+3728232	Msa0664660:intron
GTGGTCCATTTGGGTTGTAT+GGG	0.519874	4_4:-3728339	None:intergenic
GAGGTGTACGCCAAAGACAT+TGG	0.520907	4_4:+3727414	Msa0664660:CDS
ATAGCATTTAAGCCTTTCCC+TGG	0.521122	4_4:+3728766	Msa0664660:three_prime_UTR
TAATTAGATGGCTTGATGAA+GGG	0.525314	4_4:+3728572	Msa0664660:CDS
GATGAAGGGAATAATTGTGT+TGG	0.532564	4_4:+3728586	Msa0664660:CDS
TGAGAGAGTGTGGTAGTATG+GGG	0.537301	4_4:+3728871	Msa0664660:three_prime_UTR
AGACCACAACAACGTTATAG+AGG	0.546459	4_4:+3727395	Msa0664660:CDS
TGACTCTTCGTACCAGGGAA+AGG	0.559667	4_4:-3728778	None:intergenic
TCGTTTAGTTGACGATCATG+TGG	0.585365	4_4:+3729072	Msa0664660:three_prime_UTR
TGTTTGTTTCCACGGCAGAA+AGG	0.587424	4_4:+3728963	Msa0664660:three_prime_UTR
ACGTGAGAGCCTTTCTGCCG+TGG	0.592237	4_4:-3728972	None:intergenic
CTCAGTGACTCTTCGTACCA+GGG	0.602759	4_4:-3728783	None:intergenic
ACACCTCTATAACGTTGTTG+TGG	0.611286	4_4:-3727398	None:intergenic
TAAACGAACGTTTGAAACCA+CGG	0.614722	4_4:-3729056	None:intergenic
GAGAGAGTGTGGTAGTATGG+GGG	0.620401	4_4:+3728872	Msa0664660:three_prime_UTR
TTTGTCTATGGCAATGACAT+GGG	0.635554	4_4:+3728526	Msa0664660:CDS
GTCTATGGCAATGACATGGG+TGG	0.637989	4_4:+3728529	Msa0664660:CDS
CGTCTAGAGTGTTGCCACCG+TGG	0.643077	4_4:+3729039	Msa0664660:three_prime_UTR
AGCTTAGATGAAGAAGATTG+TGG	0.644613	4_4:-3728358	None:intergenic
AATGACATGGGTGGAACAAG+TGG	0.664936	4_4:+3728538	Msa0664660:CDS
GAGCATATGATGAAGCAGCA+AGG	0.668846	4_4:+3728284	Msa0664660:CDS
AAAGTTAAATAAGTGTCACA+TGG	0.697415	4_4:+3728402	Msa0664660:CDS
GAAGCAGCAAGGTTAATGTG+TGG	0.732232	4_4:+3728295	Msa0664660:CDS
GGTGTACGCCAAAGACATTG+GGG	0.746100	4_4:+3727416	Msa0664660:CDS
ACGAACGTTTGAAACCACGG+TGG	0.829556	4_4:-3729053	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTTTTTTTTTTTTGACTAT+AGG	+	chr4_4:3728212-3728231	Msa0664660:intron	10.0%
!!!	ATTTTTTTTTTTTTGACTAT+AGG	+	chr4_4:3728212-3728231	Msa0664660:intron	10.0%
!!!	CACTCTATTTAATTTTTTTT+TGG	+	chr4_4:3727962-3727981	Msa0664660:intron	15.0%
!!!	TTTTTTCTTATAATTGAGTT+AGG	+	chr4_4:3728117-3728136	Msa0664660:intron	15.0%
!!	TGATTATATGATTATTACAA+AGG	+	chr4_4:3728169-3728188	Msa0664660:intron	15.0%
!!	GATTATATGATTATTACAAA+GGG	+	chr4_4:3728170-3728189	Msa0664660:intron	15.0%
!!!	CACTCTATTTAATTTTTTTT+TGG	+	chr4_4:3727962-3727981	Msa0664660:intron	15.0%
!!!	TTTTTTCTTATAATTGAGTT+AGG	+	chr4_4:3728117-3728136	Msa0664660:intron	15.0%
!!	TGATTATATGATTATTACAA+AGG	+	chr4_4:3728169-3728188	Msa0664660:intron	15.0%
!!	GATTATATGATTATTACAAA+GGG	+	chr4_4:3728170-3728189	Msa0664660:intron	15.0%
!!!	ATTATTAGAAAGGGTATTTA+TGG	+	chr4_4:3727665-3727684	Msa0664660:intron	20.0%
!!!	GAGTGAAATTAGTTATATTT+TGG	-	chr4_4:3727947-3727966	None:intergenic	20.0%
!!!	TATTTCATTGAAGAGTATTT+TGG	-	chr4_4:3728016-3728035	None:intergenic	20.0%
!!!	TTTGATATGAACTTTGTTTT+AGG	-	chr4_4:3728819-3728838	None:intergenic	20.0%
!!	AAACCTTATACATTTATTAC+AGG	-	chr4_4:3728908-3728927	None:intergenic	20.0%
!!!	TGTATAAGGTTTAGTAATTT+TGG	+	chr4_4:3728916-3728935	Msa0664660:three_prime_UTR	20.0%
!!!	ATTATTAGAAAGGGTATTTA+TGG	+	chr4_4:3727665-3727684	Msa0664660:intron	20.0%
!!!	GAGTGAAATTAGTTATATTT+TGG	-	chr4_4:3727947-3727966	None:intergenic	20.0%
!!!	TATTTCATTGAAGAGTATTT+TGG	-	chr4_4:3728016-3728035	None:intergenic	20.0%
!!!	TTTGATATGAACTTTGTTTT+AGG	-	chr4_4:3728819-3728838	None:intergenic	20.0%
!!	AAACCTTATACATTTATTAC+AGG	-	chr4_4:3728908-3728927	None:intergenic	20.0%
!!!	TGTATAAGGTTTAGTAATTT+TGG	+	chr4_4:3728916-3728935	Msa0664660:three_prime_UTR	20.0%
!!!	GTTTTTTTGTTTCATCATCA+TGG	+	chr4_4:3727370-3727389	Msa0664660:exon	25.0%
!	GGAAAGTGAATTACAATAAA+GGG	-	chr4_4:3727466-3727485	None:intergenic	25.0%
!	TGATCACTTGATTATTAGAA+AGG	+	chr4_4:3727655-3727674	Msa0664660:intron	25.0%
!	GATCACTTGATTATTAGAAA+GGG	+	chr4_4:3727656-3727675	Msa0664660:intron	25.0%
!!	ATTTTCTTGATGTGATCAAA+AGG	-	chr4_4:3728059-3728078	None:intergenic	25.0%
!	AAAGTTAAATAAGTGTCACA+TGG	+	chr4_4:3728402-3728421	Msa0664660:CDS	25.0%
!!	AATAGTAACACTTTTGTCTA+TGG	+	chr4_4:3728514-3728533	Msa0664660:CDS	25.0%
!!	GTGAAACTAGTTTAATTAGA+TGG	+	chr4_4:3728560-3728579	Msa0664660:CDS	25.0%
!	TCACCTGTAATAAATGTATA+AGG	+	chr4_4:3728902-3728921	Msa0664660:three_prime_UTR	25.0%
!!!	GTTTTTTTGTTTCATCATCA+TGG	+	chr4_4:3727370-3727389	Msa0664660:exon	25.0%
!	GGAAAGTGAATTACAATAAA+GGG	-	chr4_4:3727466-3727485	None:intergenic	25.0%
!	TGATCACTTGATTATTAGAA+AGG	+	chr4_4:3727655-3727674	Msa0664660:intron	25.0%
!	GATCACTTGATTATTAGAAA+GGG	+	chr4_4:3727656-3727675	Msa0664660:intron	25.0%
!!	ATTTTCTTGATGTGATCAAA+AGG	-	chr4_4:3728059-3728078	None:intergenic	25.0%
!	AAAGTTAAATAAGTGTCACA+TGG	+	chr4_4:3728402-3728421	Msa0664660:CDS	25.0%
!!	AATAGTAACACTTTTGTCTA+TGG	+	chr4_4:3728514-3728533	Msa0664660:CDS	25.0%
!!	GTGAAACTAGTTTAATTAGA+TGG	+	chr4_4:3728560-3728579	Msa0664660:CDS	25.0%
!	TCACCTGTAATAAATGTATA+AGG	+	chr4_4:3728902-3728921	Msa0664660:three_prime_UTR	25.0%
	GGGAAAGTGAATTACAATAA+AGG	-	chr4_4:3727467-3727486	None:intergenic	30.0%
!	TTACTGTGATTTTGTGAAAC+TGG	-	chr4_4:3727793-3727812	None:intergenic	30.0%
!	TTTTCACAAGCAACACATTA+AGG	-	chr4_4:3727867-3727886	None:intergenic	30.0%
	CACATCAAGAAAATTGAACA+AGG	+	chr4_4:3728065-3728084	Msa0664660:intron	30.0%
	ACTATAGGAAGACAAGAATA+TGG	+	chr4_4:3728227-3728246	Msa0664660:intron	30.0%
!	CTTTGTGTTGAAACTTTTTG+TGG	-	chr4_4:3728478-3728497	None:intergenic	30.0%
	TTAATTAGATGGCTTGATGA+AGG	+	chr4_4:3728571-3728590	Msa0664660:CDS	30.0%
	TAATTAGATGGCTTGATGAA+GGG	+	chr4_4:3728572-3728591	Msa0664660:CDS	30.0%
	ATGAAGGGAATAATTGTGTT+GGG	+	chr4_4:3728587-3728606	Msa0664660:CDS	30.0%
	AATAATTGTGTTGGGTTTGA+AGG	+	chr4_4:3728595-3728614	Msa0664660:CDS	30.0%
	ATTCAAGAGTTGCTTGATTA+TGG	+	chr4_4:3728682-3728701	Msa0664660:CDS	30.0%
	TTATTGTGTGTTTGTTTCCA+CGG	+	chr4_4:3728955-3728974	Msa0664660:three_prime_UTR	30.0%
	GGGAAAGTGAATTACAATAA+AGG	-	chr4_4:3727467-3727486	None:intergenic	30.0%
!	TTACTGTGATTTTGTGAAAC+TGG	-	chr4_4:3727793-3727812	None:intergenic	30.0%
!	TTTTCACAAGCAACACATTA+AGG	-	chr4_4:3727867-3727886	None:intergenic	30.0%
	CACATCAAGAAAATTGAACA+AGG	+	chr4_4:3728065-3728084	Msa0664660:intron	30.0%
	ACTATAGGAAGACAAGAATA+TGG	+	chr4_4:3728227-3728246	Msa0664660:intron	30.0%
!	CTTTGTGTTGAAACTTTTTG+TGG	-	chr4_4:3728478-3728497	None:intergenic	30.0%
	TTAATTAGATGGCTTGATGA+AGG	+	chr4_4:3728571-3728590	Msa0664660:CDS	30.0%
	TAATTAGATGGCTTGATGAA+GGG	+	chr4_4:3728572-3728591	Msa0664660:CDS	30.0%
	ATGAAGGGAATAATTGTGTT+GGG	+	chr4_4:3728587-3728606	Msa0664660:CDS	30.0%
	AATAATTGTGTTGGGTTTGA+AGG	+	chr4_4:3728595-3728614	Msa0664660:CDS	30.0%
	ATTCAAGAGTTGCTTGATTA+TGG	+	chr4_4:3728682-3728701	Msa0664660:CDS	30.0%
	TTATTGTGTGTTTGTTTCCA+CGG	+	chr4_4:3728955-3728974	Msa0664660:three_prime_UTR	30.0%
!!	TGAAAGTGTTGAAGAGTGAA+GGG	-	chr4_4:3727487-3727506	None:intergenic	35.0%
!!	ATGAAAGTGTTGAAGAGTGA+AGG	-	chr4_4:3727488-3727507	None:intergenic	35.0%
!	AGACGCGATATTTTACATTC+TGG	+	chr4_4:3727824-3727843	Msa0664660:intron	35.0%
!	CGATATTTTACATTCTGGCA+CGG	+	chr4_4:3727829-3727848	Msa0664660:intron	35.0%
	CAACACATTAAGGCAATGTT+TGG	-	chr4_4:3727857-3727876	None:intergenic	35.0%
	AGGAAGACAAGAATATGGTT+AGG	+	chr4_4:3728232-3728251	Msa0664660:intron	35.0%
!!	ATTTGGGTTGTATGGGAAAT+TGG	-	chr4_4:3728335-3728354	None:intergenic	35.0%
	AATTTCCCATACAACCCAAA+TGG	+	chr4_4:3728334-3728353	Msa0664660:CDS	35.0%
	AAGAAGATTGTGGTCCATTT+GGG	-	chr4_4:3728351-3728370	None:intergenic	35.0%
	AGCTTAGATGAAGAAGATTG+TGG	-	chr4_4:3728361-3728380	None:intergenic	35.0%
!	ACTTTTTGTGGCTCTTTTTG+TGG	-	chr4_4:3728466-3728485	None:intergenic	35.0%
!	TTTTGTCTATGGCAATGACA+TGG	+	chr4_4:3728525-3728544	Msa0664660:CDS	35.0%
	TTTGTCTATGGCAATGACAT+GGG	+	chr4_4:3728526-3728545	Msa0664660:CDS	35.0%
	GATGAAGGGAATAATTGTGT+TGG	+	chr4_4:3728586-3728605	Msa0664660:CDS	35.0%
	ATGTGATCATCTTCAAGAAC+AGG	-	chr4_4:3728652-3728671	None:intergenic	35.0%
!!	TCAATTGAGCTTTGTTCTGT+TGG	+	chr4_4:3728706-3728725	Msa0664660:CDS	35.0%
!!!	AACTTTGTTTTAGGCGAGTT+GGG	-	chr4_4:3728810-3728829	None:intergenic	35.0%
!	TAAACGAACGTTTGAAACCA+CGG	-	chr4_4:3729059-3729078	None:intergenic	35.0%
!!	TGAAAGTGTTGAAGAGTGAA+GGG	-	chr4_4:3727487-3727506	None:intergenic	35.0%
!!	ATGAAAGTGTTGAAGAGTGA+AGG	-	chr4_4:3727488-3727507	None:intergenic	35.0%
!	AGACGCGATATTTTACATTC+TGG	+	chr4_4:3727824-3727843	Msa0664660:intron	35.0%
!	CGATATTTTACATTCTGGCA+CGG	+	chr4_4:3727829-3727848	Msa0664660:intron	35.0%
	CAACACATTAAGGCAATGTT+TGG	-	chr4_4:3727857-3727876	None:intergenic	35.0%
	AGGAAGACAAGAATATGGTT+AGG	+	chr4_4:3728232-3728251	Msa0664660:intron	35.0%
!!	ATTTGGGTTGTATGGGAAAT+TGG	-	chr4_4:3728335-3728354	None:intergenic	35.0%
	AATTTCCCATACAACCCAAA+TGG	+	chr4_4:3728334-3728353	Msa0664660:CDS	35.0%
	AAGAAGATTGTGGTCCATTT+GGG	-	chr4_4:3728351-3728370	None:intergenic	35.0%
	AGCTTAGATGAAGAAGATTG+TGG	-	chr4_4:3728361-3728380	None:intergenic	35.0%
!	ACTTTTTGTGGCTCTTTTTG+TGG	-	chr4_4:3728466-3728485	None:intergenic	35.0%
!	TTTTGTCTATGGCAATGACA+TGG	+	chr4_4:3728525-3728544	Msa0664660:CDS	35.0%
	TTTGTCTATGGCAATGACAT+GGG	+	chr4_4:3728526-3728545	Msa0664660:CDS	35.0%
	GATGAAGGGAATAATTGTGT+TGG	+	chr4_4:3728586-3728605	Msa0664660:CDS	35.0%
	ATGTGATCATCTTCAAGAAC+AGG	-	chr4_4:3728652-3728671	None:intergenic	35.0%
!!	TCAATTGAGCTTTGTTCTGT+TGG	+	chr4_4:3728706-3728725	Msa0664660:CDS	35.0%
!!!	AACTTTGTTTTAGGCGAGTT+GGG	-	chr4_4:3728810-3728829	None:intergenic	35.0%
!	TAAACGAACGTTTGAAACCA+CGG	-	chr4_4:3729059-3729078	None:intergenic	35.0%
	AGACCACAACAACGTTATAG+AGG	+	chr4_4:3727395-3727414	Msa0664660:CDS	40.0%
	ACACCTCTATAACGTTGTTG+TGG	-	chr4_4:3727401-3727420	None:intergenic	40.0%
	TCTCCCTCTTAGTATGTGTT+CGG	+	chr4_4:3727717-3727736	Msa0664660:intron	40.0%
	AGACCGAACACATACTAAGA+GGG	-	chr4_4:3727723-3727742	None:intergenic	40.0%
!	TTTGGTTTAACATAGCCGTG+CGG	+	chr4_4:3727747-3727766	Msa0664660:intron	40.0%
	CTAACTTCTATTTCACCGCA+CGG	-	chr4_4:3727765-3727784	None:intergenic	40.0%
	GAAGAAGATTGTGGTCCATT+TGG	-	chr4_4:3728352-3728371	None:intergenic	40.0%
!	TTGTGGTGGTTGTTGTTGTT+TGG	-	chr4_4:3728449-3728468	None:intergenic	40.0%
!	TTTTGTGGCTCTTTTTGTGG+TGG	-	chr4_4:3728463-3728482	None:intergenic	40.0%
	ATAGCATTTAAGCCTTTCCC+TGG	+	chr4_4:3728766-3728785	Msa0664660:three_prime_UTR	40.0%
!!!	GAACTTTGTTTTAGGCGAGT+TGG	-	chr4_4:3728811-3728830	None:intergenic	40.0%
!!	ACTCTCTCAAAAAGGTGTCA+TGG	-	chr4_4:3728860-3728879	None:intergenic	40.0%
	ACTACCACACTCTCTCAAAA+AGG	-	chr4_4:3728868-3728887	None:intergenic	40.0%
!	TTTGAGAGAGTGTGGTAGTA+TGG	+	chr4_4:3728869-3728888	Msa0664660:three_prime_UTR	40.0%
!	TTGAGAGAGTGTGGTAGTAT+GGG	+	chr4_4:3728870-3728889	Msa0664660:three_prime_UTR	40.0%
	TCGTTTAGTTGACGATCATG+TGG	+	chr4_4:3729072-3729091	Msa0664660:three_prime_UTR	40.0%
	AGACCACAACAACGTTATAG+AGG	+	chr4_4:3727395-3727414	Msa0664660:CDS	40.0%
	ACACCTCTATAACGTTGTTG+TGG	-	chr4_4:3727401-3727420	None:intergenic	40.0%
	TCTCCCTCTTAGTATGTGTT+CGG	+	chr4_4:3727717-3727736	Msa0664660:intron	40.0%
	AGACCGAACACATACTAAGA+GGG	-	chr4_4:3727723-3727742	None:intergenic	40.0%
!	TTTGGTTTAACATAGCCGTG+CGG	+	chr4_4:3727747-3727766	Msa0664660:intron	40.0%
	CTAACTTCTATTTCACCGCA+CGG	-	chr4_4:3727765-3727784	None:intergenic	40.0%
	GAAGAAGATTGTGGTCCATT+TGG	-	chr4_4:3728352-3728371	None:intergenic	40.0%
!	TTGTGGTGGTTGTTGTTGTT+TGG	-	chr4_4:3728449-3728468	None:intergenic	40.0%
!	TTTTGTGGCTCTTTTTGTGG+TGG	-	chr4_4:3728463-3728482	None:intergenic	40.0%
	ATAGCATTTAAGCCTTTCCC+TGG	+	chr4_4:3728766-3728785	Msa0664660:three_prime_UTR	40.0%
!!!	GAACTTTGTTTTAGGCGAGT+TGG	-	chr4_4:3728811-3728830	None:intergenic	40.0%
!!	ACTCTCTCAAAAAGGTGTCA+TGG	-	chr4_4:3728860-3728879	None:intergenic	40.0%
	ACTACCACACTCTCTCAAAA+AGG	-	chr4_4:3728868-3728887	None:intergenic	40.0%
!	TTTGAGAGAGTGTGGTAGTA+TGG	+	chr4_4:3728869-3728888	Msa0664660:three_prime_UTR	40.0%
!	TTGAGAGAGTGTGGTAGTAT+GGG	+	chr4_4:3728870-3728889	Msa0664660:three_prime_UTR	40.0%
	TCGTTTAGTTGACGATCATG+TGG	+	chr4_4:3729072-3729091	Msa0664660:three_prime_UTR	40.0%
	AGGTGTACGCCAAAGACATT+GGG	+	chr4_4:3727415-3727434	Msa0664660:CDS	45.0%
	CCAAAGACATTGGGGTTCTT+GGG	+	chr4_4:3727424-3727443	Msa0664660:CDS	45.0%
	CAGACCGAACACATACTAAG+AGG	-	chr4_4:3727724-3727743	None:intergenic	45.0%
	CTCTTAGTATGTGTTCGGTC+TGG	+	chr4_4:3727722-3727741	Msa0664660:intron	45.0%
!!!	TATGTGTTCGGTCTGGCTTT+TGG	+	chr4_4:3727729-3727748	Msa0664660:intron	45.0%
	CGTGCGGTGAAATAGAAGTT+AGG	+	chr4_4:3727763-3727782	Msa0664660:intron	45.0%
	GAGCATATGATGAAGCAGCA+AGG	+	chr4_4:3728284-3728303	Msa0664660:CDS	45.0%
	GAAGCAGCAAGGTTAATGTG+TGG	+	chr4_4:3728295-3728314	Msa0664660:CDS	45.0%
!	GGGAAATTGGTACGTGCTTT+TGG	-	chr4_4:3728322-3728341	None:intergenic	45.0%
!!	GTGGTCCATTTGGGTTGTAT+GGG	-	chr4_4:3728342-3728361	None:intergenic	45.0%
!!	TGTGGTCCATTTGGGTTGTA+TGG	-	chr4_4:3728343-3728362	None:intergenic	45.0%
	AATGACATGGGTGGAACAAG+TGG	+	chr4_4:3728538-3728557	Msa0664660:CDS	45.0%
!!	GACACCTTTTTGAGAGAGTG+TGG	+	chr4_4:3728861-3728880	Msa0664660:three_prime_UTR	45.0%
!	TGAGAGAGTGTGGTAGTATG+GGG	+	chr4_4:3728871-3728890	Msa0664660:three_prime_UTR	45.0%
	TGTTTGTTTCCACGGCAGAA+AGG	+	chr4_4:3728963-3728982	Msa0664660:three_prime_UTR	45.0%
	AGGTGTACGCCAAAGACATT+GGG	+	chr4_4:3727415-3727434	Msa0664660:CDS	45.0%
	CCAAAGACATTGGGGTTCTT+GGG	+	chr4_4:3727424-3727443	Msa0664660:CDS	45.0%
	CAGACCGAACACATACTAAG+AGG	-	chr4_4:3727724-3727743	None:intergenic	45.0%
	CTCTTAGTATGTGTTCGGTC+TGG	+	chr4_4:3727722-3727741	Msa0664660:intron	45.0%
!!!	TATGTGTTCGGTCTGGCTTT+TGG	+	chr4_4:3727729-3727748	Msa0664660:intron	45.0%
	CGTGCGGTGAAATAGAAGTT+AGG	+	chr4_4:3727763-3727782	Msa0664660:intron	45.0%
	GAGCATATGATGAAGCAGCA+AGG	+	chr4_4:3728284-3728303	Msa0664660:CDS	45.0%
	GAAGCAGCAAGGTTAATGTG+TGG	+	chr4_4:3728295-3728314	Msa0664660:CDS	45.0%
!	GGGAAATTGGTACGTGCTTT+TGG	-	chr4_4:3728322-3728341	None:intergenic	45.0%
!!	GTGGTCCATTTGGGTTGTAT+GGG	-	chr4_4:3728342-3728361	None:intergenic	45.0%
!!	TGTGGTCCATTTGGGTTGTA+TGG	-	chr4_4:3728343-3728362	None:intergenic	45.0%
	AATGACATGGGTGGAACAAG+TGG	+	chr4_4:3728538-3728557	Msa0664660:CDS	45.0%
!!	GACACCTTTTTGAGAGAGTG+TGG	+	chr4_4:3728861-3728880	Msa0664660:three_prime_UTR	45.0%
!	TGAGAGAGTGTGGTAGTATG+GGG	+	chr4_4:3728871-3728890	Msa0664660:three_prime_UTR	45.0%
	TGTTTGTTTCCACGGCAGAA+AGG	+	chr4_4:3728963-3728982	Msa0664660:three_prime_UTR	45.0%
	GAGGTGTACGCCAAAGACAT+TGG	+	chr4_4:3727414-3727433	Msa0664660:CDS	50.0%
	GGTGTACGCCAAAGACATTG+GGG	+	chr4_4:3727416-3727435	Msa0664660:CDS	50.0%
	GCCAAAGACATTGGGGTTCT+TGG	+	chr4_4:3727423-3727442	Msa0664660:CDS	50.0%
	CCCAAGAACCCCAATGTCTT+TGG	-	chr4_4:3727427-3727446	None:intergenic	50.0%
	GTCTATGGCAATGACATGGG+TGG	+	chr4_4:3728529-3728548	Msa0664660:CDS	50.0%
	TGACTCTTCGTACCAGGGAA+AGG	-	chr4_4:3728781-3728800	None:intergenic	50.0%
	CTCAGTGACTCTTCGTACCA+GGG	-	chr4_4:3728786-3728805	None:intergenic	50.0%
	TCTCAGTGACTCTTCGTACC+AGG	-	chr4_4:3728787-3728806	None:intergenic	50.0%
!	GAGAGAGTGTGGTAGTATGG+GGG	+	chr4_4:3728872-3728891	Msa0664660:three_prime_UTR	50.0%
!	ACGAACGTTTGAAACCACGG+TGG	-	chr4_4:3729056-3729075	None:intergenic	50.0%
	GAGGTGTACGCCAAAGACAT+TGG	+	chr4_4:3727414-3727433	Msa0664660:CDS	50.0%
	GGTGTACGCCAAAGACATTG+GGG	+	chr4_4:3727416-3727435	Msa0664660:CDS	50.0%
	GCCAAAGACATTGGGGTTCT+TGG	+	chr4_4:3727423-3727442	Msa0664660:CDS	50.0%
	CCCAAGAACCCCAATGTCTT+TGG	-	chr4_4:3727427-3727446	None:intergenic	50.0%
	GTCTATGGCAATGACATGGG+TGG	+	chr4_4:3728529-3728548	Msa0664660:CDS	50.0%
	TGACTCTTCGTACCAGGGAA+AGG	-	chr4_4:3728781-3728800	None:intergenic	50.0%
	CTCAGTGACTCTTCGTACCA+GGG	-	chr4_4:3728786-3728805	None:intergenic	50.0%
	TCTCAGTGACTCTTCGTACC+AGG	-	chr4_4:3728787-3728806	None:intergenic	50.0%
!	GAGAGAGTGTGGTAGTATGG+GGG	+	chr4_4:3728872-3728891	Msa0664660:three_prime_UTR	50.0%
!	ACGAACGTTTGAAACCACGG+TGG	-	chr4_4:3729056-3729075	None:intergenic	50.0%
	ACGTGAGAGCCTTTCTGCCG+TGG	-	chr4_4:3728975-3728994	None:intergenic	60.0%
!!	CGTCTAGAGTGTTGCCACCG+TGG	+	chr4_4:3729039-3729058	Msa0664660:three_prime_UTR	60.0%
	ACGTGAGAGCCTTTCTGCCG+TGG	-	chr4_4:3728975-3728994	None:intergenic	60.0%
!!	CGTCTAGAGTGTTGCCACCG+TGG	+	chr4_4:3729039-3729058	Msa0664660:three_prime_UTR	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	3727298	3729141	3727298	ID=Msa0664660;Name=Msa0664660
chr4_4	mRNA	3727298	3729141	3727298	ID=Msa0664660-mRNA-1;Parent=Msa0664660;Name=Msa0664660-mRNA-1;_AED=0.00;_eAED=0.00;_QI=91\|1\|1\|1\|1\|1\|2\|403\|195
chr4_4	exon	3727298	3727471	3727298	ID=Msa0664660-mRNA-1:exon:1236;Parent=Msa0664660-mRNA-1
chr4_4	exon	3728234	3729141	3728234	ID=Msa0664660-mRNA-1:exon:1237;Parent=Msa0664660-mRNA-1
chr4_4	five_prime_UTR	3727298	3727388	3727298	ID=Msa0664660-mRNA-1:five_prime_utr;Parent=Msa0664660-mRNA-1
chr4_4	CDS	3727389	3727471	3727389	ID=Msa0664660-mRNA-1:cds;Parent=Msa0664660-mRNA-1
chr4_4	CDS	3728234	3728738	3728234	ID=Msa0664660-mRNA-1:cds;Parent=Msa0664660-mRNA-1
chr4_4	three_prime_UTR	3728739	3729141	3728739	ID=Msa0664660-mRNA-1:three_prime_utr;Parent=Msa0664660-mRNA-1

Gene Sequence

>Msa0664660

ATGGCAAGACCACAACAACGTTATAGAGGTGTACGCCAAAGACATTGGGGTTCTTGGGTCTCTGAAATTCGTCACCCTTTATTGAAGACAAGAATATGGTTAGGAACATTTGAAACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGTTAATGTGTGGACCAAAAGCACGTACCAATTTCCCATACAACCCAAATGGACCACAATCTTCTTCATCTAAGCTTCTTTCAGCAACTTTAACTGCAAAGTTAAATAAGTGTCACATGGCTTCTCTTTCTCTTCAAATGACCAAACAACAACAACCACCACAAAAAGAGCCACAAAAAGTTTCAACACAAAGTTTCAATTCTTCAATTAATAGTAACACTTTTGTCTATGGCAATGACATGGGTGGAACAAGTGGTGAAACTAGTTTAATTAGATGGCTTGATGAAGGGAATAATTGTGTTGGGTTTGAAGGTCAAGTTGAAGTTTCTCATCAACAATTTCAACCTGTTCTTGAAGATGATCACATTGAACAAATGATTCAAGAGTTGCTTGATTATGGTTCAATTGAGCTTTGTTCTGTTGGTTCATCTTAG

Protein sequence

>Msa0664660

MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNGPQSSSSKLLSATLTAKLNKCHMASLSLQMTKQQQPPQKEPQKVSTQSFNSSINSNTFVYGNDMGGTSGETSLIRWLDEGNNCVGFEGQVEVSHQQFQPVLEDDHIEQMIQELLDYGSIELCSVGSS*