AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0530050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0530050 MtrunA17_Chr4g0002631 98.462 195 3 0 1 195 1 195 2.65e-147 407
Msa0530050 MtrunA17_Chr3g0137174 63.077 195 58 5 1 192 1 184 2.71e-67 204
Msa0530050 MtrunA17_Chr4g0003421 59.596 99 25 1 6 89 38 136 3.37e-34 121
Msa0530050 MtrunA17_Chr4g0063751 61.856 97 22 2 6 89 5 99 1.22e-33 119
Msa0530050 MtrunA17_Chr2g0333011 66.667 90 24 1 6 89 5 94 1.06e-32 115
Msa0530050 MtrunA17_Chr3g0099871 68.333 60 19 0 5 64 24 83 6.15e-24 94.4
Msa0530050 MtrunA17_Chr3g0115631 43.860 114 59 1 1 109 143 256 1.43e-23 95.5
Msa0530050 MtrunA17_Chr8g0383591 62.500 64 24 0 3 66 140 203 1.57e-23 95.1
Msa0530050 MtrunA17_Chr3g0137831 55.752 113 33 3 1 96 1 113 3.05e-23 92.0
Msa0530050 MtrunA17_Chr8g0382491 56.627 83 28 2 2 77 107 188 4.35e-23 93.6
Msa0530050 MtrunA17_Chr1g0149331 43.262 141 75 3 5 143 4 141 7.44e-23 90.9
Msa0530050 MtrunA17_Chr2g0316931 60.000 80 26 2 7 81 30 108 9.57e-23 90.9
Msa0530050 MtrunA17_Chr5g0425561 52.273 88 39 1 3 87 168 255 1.33e-22 93.2
Msa0530050 MtrunA17_Chr8g0375031 60.656 61 24 0 5 65 122 182 3.24e-22 89.7
Msa0530050 MtrunA17_Chr2g0282651 62.295 61 23 0 5 65 67 127 3.39e-22 90.5
Msa0530050 MtrunA17_Chr2g0334031 51.190 84 39 1 5 88 114 195 6.84e-22 91.3
Msa0530050 MtrunA17_Chr1g0196781 56.250 80 34 1 8 86 152 231 7.01e-22 90.5
Msa0530050 MtrunA17_Chr2g0323171 70.175 57 17 0 8 64 65 121 1.49e-21 87.0
Msa0530050 MtrunA17_Chr7g0257911 65.517 58 20 0 8 65 31 88 1.63e-21 89.4
Msa0530050 MtrunA17_Chr7g0252381 42.520 127 71 2 7 131 41 167 1.71e-21 89.0
Msa0530050 MtrunA17_Chr1g0150631 29.444 180 114 4 8 177 38 214 1.98e-21 87.8
Msa0530050 MtrunA17_Chr5g0437671 65.000 60 21 0 5 64 82 141 2.03e-21 90.5
Msa0530050 MtrunA17_Chr1g0150661 34.595 185 93 8 8 177 35 206 3.43e-21 87.0
Msa0530050 MtrunA17_Chr4g0044911 66.667 57 19 0 8 64 96 152 3.58e-21 87.4
Msa0530050 MtrunA17_Chr2g0324131 60.563 71 21 1 1 64 204 274 4.04e-21 89.7
Msa0530050 MtrunA17_Chr7g0221471 64.912 57 20 0 8 64 51 107 4.85e-21 85.5
Msa0530050 MtrunA17_Chr7g0221501 64.912 57 20 0 8 64 51 107 7.11e-21 85.1
Msa0530050 MtrunA17_Chr4g0044871 64.912 57 20 0 8 64 96 152 1.05e-20 85.9
Msa0530050 MtrunA17_Chr4g0044881 63.793 58 21 0 7 64 113 170 1.20e-20 85.9
Msa0530050 MtrunA17_Chr8g0344961 43.103 116 55 3 5 111 121 234 1.47e-20 87.8
Msa0530050 MtrunA17_Chr1g0195151 37.037 135 74 2 8 142 77 200 1.83e-20 86.7
Msa0530050 MtrunA17_Chr4g0044901 64.912 57 20 0 8 64 96 152 1.88e-20 85.5
Msa0530050 MtrunA17_Chr2g0295421 61.667 60 23 0 8 67 96 155 1.97e-20 85.9
Msa0530050 MtrunA17_Chr2g0282621 63.333 60 22 0 8 67 15 74 3.21e-20 83.2
Msa0530050 MtrunA17_Chr1g0150691 32.447 188 102 6 8 177 22 202 3.50e-20 84.3
Msa0530050 MtrunA17_Chr6g0453661 54.118 85 34 2 3 86 33 113 3.66e-20 87.0
Msa0530050 MtrunA17_Chr7g0217991 51.190 84 39 1 3 86 37 118 4.72e-20 87.0
Msa0530050 MtrunA17_Chr4g0023411 66.667 57 19 0 8 64 65 121 8.83e-20 82.8
Msa0530050 MtrunA17_Chr5g0437371 64.912 57 20 0 7 63 65 121 1.01e-19 85.1
Msa0530050 MtrunA17_Chr5g0396911 60.000 60 24 0 4 63 108 167 1.28e-19 84.3
Msa0530050 MtrunA17_Chr1g0150671 39.370 127 60 3 5 124 43 159 1.41e-19 84.0
Msa0530050 MtrunA17_Chr4g0042761 60.656 61 24 0 3 63 43 103 1.42e-19 84.3
Msa0530050 MtrunA17_Chr5g0401871 41.667 96 53 1 5 97 22 117 2.13e-19 81.3
Msa0530050 MtrunA17_Chr5g0412641 65.625 64 21 1 7 70 45 107 2.41e-19 84.3
Msa0530050 MtrunA17_Chr8g0367911 58.333 72 26 1 7 78 43 110 3.05e-19 83.2
Msa0530050 MtrunA17_Chr3g0126321 58.065 62 26 0 6 67 111 172 5.18e-19 83.2
Msa0530050 MtrunA17_Chr4g0062551 58.333 60 25 0 5 64 50 109 9.51e-19 78.6
Msa0530050 MtrunA17_Chr5g0438831 62.069 58 22 0 7 64 45 102 1.82e-18 80.9
Msa0530050 MtrunA17_Chr3g0134161 57.895 57 24 0 8 64 45 101 2.30e-18 78.6
Msa0530050 MtrunA17_Chr6g0486701 64.912 57 20 0 8 64 44 100 3.03e-18 79.3
Msa0530050 MtrunA17_Chr4g0062161 58.333 60 25 0 5 64 50 109 3.04e-18 79.0
Msa0530050 MtrunA17_Chr5g0399441 63.158 57 21 0 8 64 28 84 3.10e-18 78.2
Msa0530050 MtrunA17_Chr3g0140161 64.912 57 20 0 8 64 43 99 4.38e-18 78.2
Msa0530050 MtrunA17_Chr7g0275841 61.404 57 22 0 8 64 28 84 4.60e-18 77.8
Msa0530050 MtrunA17_Chr7g0243431 58.730 63 19 1 8 63 78 140 6.05e-18 80.9
Msa0530050 MtrunA17_Chr7g0232261 64.912 57 20 0 8 64 61 117 6.17e-18 78.6
Msa0530050 MtrunA17_Chr5g0438801 62.069 58 22 0 7 64 50 107 6.51e-18 79.3
Msa0530050 MtrunA17_Chr8g0350701 37.984 129 75 2 6 129 25 153 6.61e-18 79.7
Msa0530050 MtrunA17_Chr7g0253424 63.158 57 21 0 7 63 38 94 9.29e-18 79.0
Msa0530050 MtrunA17_Chr8g0340311 62.069 58 22 0 8 65 47 104 1.23e-17 77.4
Msa0530050 MtrunA17_Chr4g0017851 63.158 57 21 0 8 64 118 174 1.47e-17 79.0
Msa0530050 MtrunA17_Chr4g0055951 63.158 57 21 0 8 64 74 130 1.57e-17 78.2
Msa0530050 MtrunA17_Chr8g0387801 47.778 90 45 1 6 93 105 194 1.58e-17 79.0
Msa0530050 MtrunA17_Chr5g0432821 51.562 64 31 0 1 64 117 180 1.93e-17 78.2
Msa0530050 MtrunA17_Chr4g0055761 59.375 64 25 1 6 68 143 206 2.31e-17 77.8
Msa0530050 MtrunA17_Chr8g0335311 59.016 61 24 1 6 65 94 154 2.61e-17 76.3
Msa0530050 MtrunA17_Chr8g0390091 64.912 57 20 0 8 64 37 93 2.97e-17 77.0
Msa0530050 MtrunA17_Chr8g0378811 42.453 106 52 2 1 97 48 153 3.40e-17 77.4
Msa0530050 MtrunA17_Chr2g0301191 55.000 60 27 0 8 67 19 78 4.50e-17 75.9
Msa0530050 MtrunA17_Chr6g0461271 59.322 59 24 0 5 63 30 88 5.70e-17 77.4
Msa0530050 MtrunA17_Chr4g0066931 59.322 59 24 0 7 65 52 110 6.06e-17 77.4
Msa0530050 MtrunA17_Chr4g0055781 53.521 71 32 1 5 74 99 169 6.88e-17 76.3
Msa0530050 MtrunA17_Chr8g0346741 59.649 57 23 0 8 64 39 95 7.86e-17 74.7
Msa0530050 MtrunA17_Chr2g0286161 34.559 136 76 3 7 142 49 171 8.32e-17 76.6
Msa0530050 MtrunA17_Chr1g0153151 56.140 57 25 0 8 64 44 100 8.71e-17 74.3
Msa0530050 MtrunA17_Chr1g0189941 57.143 56 24 0 8 63 24 79 8.71e-17 73.9
Msa0530050 MtrunA17_Chr4g0055801 58.462 65 26 1 5 68 151 215 9.75e-17 76.6
Msa0530050 MtrunA17_Chr1g0184081 60.000 60 23 1 7 65 20 79 1.02e-16 73.6
Msa0530050 MtrunA17_Chr2g0331231 61.404 57 22 0 8 64 41 97 1.03e-16 74.7
Msa0530050 MtrunA17_Chr4g0046161 55.556 63 27 1 5 66 54 116 1.08e-16 72.8
Msa0530050 MtrunA17_Chr8g0334801 61.404 57 22 0 8 64 52 108 1.34e-16 74.7
Msa0530050 MtrunA17_Chr1g0170531 56.452 62 26 1 6 66 87 148 1.98e-16 74.7
Msa0530050 MtrunA17_Chr7g0265851 52.564 78 31 1 8 85 24 95 2.34e-16 73.9
Msa0530050 MtrunA17_Chr2g0301171 53.333 60 28 0 8 67 19 78 3.53e-16 73.2
Msa0530050 MtrunA17_Chr1g0200931 53.846 65 29 1 2 65 17 81 4.64e-16 71.6
Msa0530050 MtrunA17_Chr8g0335331 57.627 59 24 1 8 65 125 183 6.49e-16 72.8
Msa0530050 MtrunA17_Chr1g0186731 59.322 59 23 1 7 64 20 78 9.08e-16 70.9
Msa0530050 MtrunA17_Chr1g0158971 55.932 59 26 0 5 63 112 170 1.05e-15 73.9
Msa0530050 MtrunA17_Chr2g0283171 55.738 61 26 1 5 64 60 120 1.51e-15 70.5
Msa0530050 MtrunA17_Chr3g0136551 49.180 61 31 0 3 63 60 120 2.54e-15 72.4
Msa0530050 MtrunA17_Chr2g0283181 55.556 63 27 1 3 64 144 206 2.98e-15 72.4
Msa0530050 MtrunA17_Chr7g0250731 54.098 61 27 1 6 65 59 119 3.68e-15 70.9
Msa0530050 MtrunA17_Chr2g0301181 51.667 60 29 0 8 67 19 78 4.33e-15 70.9
Msa0530050 MtrunA17_Chr7g0250711 54.098 61 27 1 6 65 58 118 5.87e-15 70.1
Msa0530050 MtrunA17_Chr7g0250721 54.098 61 27 1 6 65 59 119 6.07e-15 70.1
Msa0530050 MtrunA17_Chr1g0196871 58.621 58 23 1 8 64 16 73 8.22e-15 67.0
Msa0530050 MtrunA17_Chr8g0335321 52.459 61 28 1 6 65 94 154 9.71e-15 69.7
Msa0530050 MtrunA17_Chr2g0297331 59.322 59 23 1 7 64 13 71 1.67e-14 67.4
Msa0530050 MtrunA17_Chr7g0225131 55.000 60 24 1 8 67 29 85 2.51e-14 65.9
Msa0530050 MtrunA17_Chr7g0261151 57.377 61 25 1 5 64 17 77 2.67e-14 67.0
Msa0530050 MtrunA17_Chr7g0261101 53.731 67 30 1 7 72 19 85 4.00e-14 66.6
Msa0530050 MtrunA17_Chr4g0026881 55.172 58 25 1 8 64 97 154 4.33e-14 68.6
Msa0530050 MtrunA17_Chr1g0186671 59.322 59 23 1 7 64 18 76 4.81e-14 66.2
Msa0530050 MtrunA17_Chr6g0473961 60.714 56 22 0 8 63 54 109 5.33e-14 67.8
Msa0530050 MtrunA17_Chr5g0396191 68.421 57 18 0 8 64 11 67 5.84e-14 67.0
Msa0530050 MtrunA17_Chr6g0473861 60.714 56 22 0 8 63 63 118 6.53e-14 68.6
Msa0530050 MtrunA17_Chr1g0184061 51.613 62 29 1 5 65 74 135 7.51e-14 67.4
Msa0530050 MtrunA17_Chr1g0203861 60.714 56 22 0 8 63 44 99 7.87e-14 67.0
Msa0530050 MtrunA17_Chr1g0205961 56.863 51 21 1 3 53 110 159 8.45e-14 68.6
Msa0530050 MtrunA17_Chr6g0473941 60.714 56 22 0 8 63 33 88 8.77e-14 67.0
Msa0530050 MtrunA17_Chr6g0473931 60.714 56 22 0 8 63 33 88 1.26e-13 66.2
Msa0530050 MtrunA17_Chr6g0473881 58.929 56 23 0 8 63 110 165 1.32e-13 67.8
Msa0530050 MtrunA17_Chr6g0473971 58.929 56 23 0 8 63 54 109 1.45e-13 67.0
Msa0530050 MtrunA17_Chr6g0473741 58.929 56 23 0 8 63 66 121 1.76e-13 66.6
Msa0530050 MtrunA17_Chr6g0473781 58.929 56 23 0 8 63 57 112 2.76e-13 65.9
Msa0530050 MtrunA17_Chr1g0146191 65.517 58 20 0 8 65 47 104 2.87e-13 66.2
Msa0530050 MtrunA17_Chr6g0473981 58.929 56 23 0 8 63 54 109 3.66e-13 65.9
Msa0530050 MtrunA17_Chr3g0129421 64.516 62 22 0 5 66 167 228 3.77e-13 67.0
Msa0530050 MtrunA17_Chr3g0136541 51.724 58 28 0 10 67 42 99 4.21e-13 65.9
Msa0530050 MtrunA17_Chr1g0183961 58.333 72 29 1 5 75 24 95 5.61e-13 63.5
Msa0530050 MtrunA17_Chr1g0183981 53.333 60 27 1 5 63 72 131 8.19e-13 64.7
Msa0530050 MtrunA17_Chr6g0474001 57.143 56 24 0 8 63 54 109 1.06e-12 65.1
Msa0530050 MtrunA17_Chr1g0155751 56.250 64 28 0 8 71 39 102 1.11e-12 64.7
Msa0530050 MtrunA17_Chr1g0186681 53.333 60 26 1 7 64 18 77 1.23e-12 62.4
Msa0530050 MtrunA17_Chr6g0486711 66.667 57 19 0 8 64 49 105 1.24e-12 64.3
Msa0530050 MtrunA17_Chr8g0345531 57.447 47 19 1 7 53 115 160 1.58e-12 65.1
Msa0530050 MtrunA17_Chr1g0184031 54.386 57 25 1 8 63 84 140 2.61e-12 63.2
Msa0530050 MtrunA17_Chr5g0396301 47.541 61 30 1 6 64 16 76 2.61e-12 62.0
Msa0530050 MtrunA17_Chr3g0131601 66.667 57 19 0 8 64 76 132 3.75e-12 63.2
Msa0530050 MtrunA17_Chr1g0209891 57.447 47 19 1 7 53 53 98 4.67e-12 63.5
Msa0530050 MtrunA17_Chr4g0026931 54.386 57 25 1 9 64 132 188 4.91e-12 63.2
Msa0530050 MtrunA17_Chr1g0184011 54.545 55 24 1 10 63 86 140 5.98e-12 62.4
Msa0530050 MtrunA17_Chr7g0261181 53.086 81 28 2 5 75 10 90 6.76e-12 60.1
Msa0530050 MtrunA17_Chr5g0438841 42.308 78 41 1 7 84 15 88 6.87e-12 61.2
Msa0530050 MtrunA17_Chr6g0473791 63.636 44 16 0 8 51 57 100 7.42e-12 60.5
Msa0530050 MtrunA17_Chr1g0184071 50.000 62 30 1 3 63 64 125 7.67e-12 61.2
Msa0530050 MtrunA17_Chr8g0345551 58.537 41 17 0 8 48 117 157 1.66e-11 62.0
Msa0530050 MtrunA17_Chr6g0473771 53.571 56 26 0 8 63 43 98 1.68e-11 58.9
Msa0530050 MtrunA17_Chr4g0057241 54.386 57 25 1 8 64 15 70 1.95e-11 60.1
Msa0530050 MtrunA17_Chr3g0142081 55.738 61 27 0 4 64 35 95 1.96e-11 60.8
Msa0530050 MtrunA17_Chr3g0114761 54.930 71 28 1 5 75 22 88 2.52e-11 60.5
Msa0530050 MtrunA17_Chr5g0423811 42.254 71 33 1 1 63 81 151 3.94e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0530050 AT5G25190.1 63.542 192 53 3 1 192 1 175 2.36e-76 227
Msa0530050 AT1G15360.1 73.913 69 18 0 6 74 5 73 1.60e-32 116
Msa0530050 AT1G15360.2 73.913 69 18 0 6 74 5 73 1.60e-32 116
Msa0530050 AT5G25390.2 41.451 193 80 9 6 184 5 178 3.07e-30 110
Msa0530050 AT5G25390.1 40.415 193 79 10 6 184 5 175 8.11e-27 101
Msa0530050 AT5G65130.2 40.373 161 69 7 3 152 108 252 2.83e-25 99.4
Msa0530050 AT5G65130.1 40.373 161 69 7 3 152 106 250 2.85e-25 99.4
Msa0530050 AT3G20310.1 55.294 85 34 1 5 89 24 104 1.30e-23 94.4
Msa0530050 AT1G22190.1 65.079 63 22 0 2 64 77 139 4.06e-23 93.2
Msa0530050 AT5G11190.1 35.106 188 109 3 6 184 5 188 1.19e-22 90.5
Msa0530050 AT1G78080.1 41.406 128 69 3 2 123 146 273 1.30e-22 93.2
Msa0530050 AT3G15210.1 68.966 58 18 0 7 64 24 81 2.65e-22 90.5
Msa0530050 AT1G36060.1 62.500 64 24 0 1 64 136 199 2.72e-22 92.0
Msa0530050 AT4G13620.1 55.696 79 35 0 4 82 228 306 1.14e-21 91.3
Msa0530050 AT4G39780.1 66.667 60 20 0 5 64 90 149 1.33e-21 89.7
Msa0530050 AT5G44210.1 45.098 102 51 2 3 104 28 124 1.38e-21 87.8
Msa0530050 AT1G50640.1 63.333 60 22 0 7 66 27 86 1.55e-21 88.6
Msa0530050 AT2G22200.1 61.905 63 24 0 2 64 65 127 1.85e-21 89.0
Msa0530050 AT5G13910.1 37.778 135 74 2 7 131 19 153 2.08e-21 87.8
Msa0530050 AT5G13330.1 56.164 73 31 1 4 75 34 106 3.31e-21 87.4
Msa0530050 AT1G72360.1 50.000 72 36 0 7 78 24 95 6.77e-21 86.3
Msa0530050 AT1G72360.2 50.000 72 36 0 7 78 75 146 1.52e-20 86.7
Msa0530050 AT5G05410.2 66.667 57 19 0 8 64 79 135 1.53e-20 87.4
Msa0530050 AT1G28370.1 60.938 64 24 1 7 69 19 82 1.62e-20 84.3
Msa0530050 AT1G72360.3 50.000 72 36 0 7 78 73 144 1.63e-20 86.3
Msa0530050 AT1G28370.2 60.938 64 24 1 7 69 57 120 1.87e-20 85.1
Msa0530050 AT5G05410.1 66.667 57 19 0 8 64 79 135 2.17e-20 87.4
Msa0530050 AT1G21910.1 66.667 57 19 0 8 64 50 106 2.52e-20 85.5
Msa0530050 AT4G06746.1 56.667 60 26 0 5 64 33 92 3.15e-20 83.2
Msa0530050 AT2G20880.1 66.667 57 19 0 8 64 187 243 3.98e-20 86.7
Msa0530050 AT3G11020.1 68.421 57 18 0 8 64 78 134 5.28e-20 86.3
Msa0530050 AT5G61890.1 63.333 60 22 0 5 64 87 146 5.44e-20 84.7
Msa0530050 AT1G24590.1 69.492 59 18 0 7 65 57 115 5.44e-20 85.9
Msa0530050 AT1G28360.1 64.912 57 20 0 8 64 12 68 6.34e-20 83.2
Msa0530050 AT4G27950.1 60.317 63 25 0 5 67 115 177 7.30e-20 85.9
Msa0530050 AT5G67190.1 36.134 119 71 1 8 126 21 134 9.34e-20 82.8
Msa0530050 AT1G12980.1 66.102 59 20 0 7 65 56 114 1.31e-19 85.1
Msa0530050 AT1G03800.1 60.000 60 24 0 5 64 50 109 1.64e-19 83.6
Msa0530050 AT2G47520.1 61.404 57 22 0 8 64 50 106 1.81e-19 81.6
Msa0530050 AT4G23750.2 54.688 64 29 0 5 68 119 182 2.42e-19 84.3
Msa0530050 AT4G23750.1 54.688 64 29 0 5 68 119 182 2.42e-19 84.3
Msa0530050 AT2G33710.1 61.667 60 23 0 5 64 67 126 2.93e-19 82.4
Msa0530050 AT5G21960.1 59.016 61 25 0 7 67 6 66 2.94e-19 82.0
Msa0530050 AT2G33710.2 61.667 60 23 0 5 64 67 126 3.88e-19 82.0
Msa0530050 AT4G11140.1 56.452 62 27 0 6 67 85 146 3.89e-19 83.2
Msa0530050 AT1G19210.1 55.556 63 28 0 5 67 9 71 4.31e-19 80.9
Msa0530050 AT3G61630.1 61.905 63 24 0 6 68 103 165 4.92e-19 83.2
Msa0530050 AT1G71450.1 66.667 57 19 0 8 64 24 80 5.85e-19 80.5
Msa0530050 AT1G74930.1 52.000 75 34 1 5 79 18 90 9.89e-19 80.5
Msa0530050 AT5G53290.1 62.069 58 22 0 6 63 123 180 1.15e-18 82.8
Msa0530050 AT2G40340.2 50.633 79 36 1 8 86 14 89 1.36e-18 81.6
Msa0530050 AT2G40340.5 50.633 79 36 1 8 86 14 89 1.36e-18 81.6
Msa0530050 AT2G40340.4 50.633 79 36 1 8 86 14 89 1.36e-18 81.6
Msa0530050 AT2G23340.1 42.857 91 52 0 8 98 28 118 1.50e-18 79.3
Msa0530050 AT1G12890.1 35.354 198 96 8 7 182 20 207 2.08e-18 80.1
Msa0530050 AT2G35700.1 56.944 72 28 1 8 76 45 116 2.15e-18 79.3
Msa0530050 AT4G36900.1 57.895 57 24 0 8 64 30 86 2.17e-18 79.3
Msa0530050 AT1G75490.1 59.649 57 23 0 8 64 42 98 2.53e-18 79.3
Msa0530050 AT3G16280.1 66.667 57 19 0 8 64 61 117 2.69e-18 80.1
Msa0530050 AT4G32800.1 63.333 60 22 0 5 64 16 75 2.72e-18 79.7
Msa0530050 AT3G16770.1 59.649 57 23 0 8 64 79 135 3.09e-18 80.1
Msa0530050 AT3G16280.2 66.667 57 19 0 8 64 79 135 3.29e-18 80.1
Msa0530050 AT2G40340.3 50.633 79 36 1 8 86 72 147 3.61e-18 80.9
Msa0530050 AT2G40340.1 50.633 79 36 1 8 86 72 147 3.79e-18 81.3
Msa0530050 AT4G16750.1 61.667 60 23 0 5 64 37 96 3.93e-18 78.6
Msa0530050 AT2G40340.6 50.633 79 36 1 8 86 79 154 4.43e-18 80.9
Msa0530050 AT3G57600.1 59.322 59 24 0 7 65 27 85 7.98e-18 79.3
Msa0530050 AT4G28140.1 61.404 57 22 0 8 64 143 199 9.11e-18 79.7
Msa0530050 AT1G28160.1 53.425 73 34 0 7 79 38 110 1.01e-17 78.6
Msa0530050 AT2G44940.1 64.912 57 20 0 8 64 100 156 1.09e-17 79.3
Msa0530050 AT5G11590.1 51.724 87 36 2 8 91 51 134 1.27e-17 78.2
Msa0530050 AT1G22985.1 59.677 62 22 1 5 63 72 133 1.67e-17 76.3
Msa0530050 AT5G25810.1 63.158 57 21 0 8 64 36 92 1.84e-17 77.4
Msa0530050 AT5G19790.1 57.143 70 29 1 5 73 19 88 1.88e-17 78.2
Msa0530050 AT1G46768.1 56.140 57 25 0 8 64 31 87 2.18e-17 75.9
Msa0530050 AT1G46768.2 56.140 57 25 0 8 64 31 87 2.18e-17 75.9
Msa0530050 AT5G18560.1 59.016 61 25 0 7 67 54 114 2.18e-17 79.0
Msa0530050 AT1G46768.3 56.140 57 25 0 8 64 31 87 2.19e-17 75.5
Msa0530050 AT2G25820.1 64.912 57 20 0 8 64 26 82 2.47e-17 77.4
Msa0530050 AT1G01250.1 61.404 57 22 0 8 64 45 101 3.32e-17 76.3
Msa0530050 AT5G47220.1 52.000 75 35 1 6 79 115 189 3.98e-17 77.0
Msa0530050 AT4G17500.1 59.375 64 25 1 6 68 146 209 4.89e-17 77.4
Msa0530050 AT3G50260.1 44.872 78 41 1 8 85 21 96 5.34e-17 74.7
Msa0530050 AT4G25470.1 48.936 94 40 3 8 93 51 144 6.99e-17 75.9
Msa0530050 AT3G60490.1 63.158 57 21 0 8 64 71 127 7.02e-17 76.6
Msa0530050 AT4G31060.1 40.367 109 58 2 8 109 27 135 9.59e-17 74.7
Msa0530050 AT2G46310.1 54.545 66 30 0 7 72 98 163 1.15e-16 76.6
Msa0530050 AT5G47230.1 59.016 61 24 1 5 64 153 213 2.60e-16 75.5
Msa0530050 AT1G71130.1 53.731 67 26 1 2 63 73 139 2.64e-16 73.2
Msa0530050 AT4G25490.1 66.071 56 19 0 8 63 48 103 3.14e-16 73.9
Msa0530050 AT5G18450.1 56.897 58 25 0 8 65 34 91 3.35e-16 75.5
Msa0530050 AT2G40350.2 53.333 60 28 0 8 67 74 133 5.01e-16 72.4
Msa0530050 AT2G40350.1 53.333 60 28 0 8 67 67 126 5.97e-16 72.0
Msa0530050 AT5G51190.1 57.377 61 25 1 5 64 69 129 6.53e-16 73.6
Msa0530050 AT5G43410.1 55.556 63 27 1 7 68 14 76 7.11e-16 71.2
Msa0530050 AT2G44840.1 54.545 66 26 2 4 65 85 150 7.52e-16 73.2
Msa0530050 AT3G23230.1 59.016 61 24 1 5 64 17 77 9.85e-16 70.9
Msa0530050 AT4G17490.1 56.250 64 27 1 2 64 131 194 1.36e-15 73.6
Msa0530050 AT5G07580.1 45.977 87 43 2 6 88 108 194 1.50e-15 72.0
Msa0530050 AT1G68550.1 61.702 47 18 0 2 48 107 153 3.24e-15 72.8
Msa0530050 AT1G68550.2 61.702 47 18 0 2 48 107 153 3.24e-15 72.8
Msa0530050 AT4G25480.1 62.500 56 21 0 8 63 51 106 4.10e-15 71.2
Msa0530050 AT2G38340.1 48.235 85 36 1 4 80 66 150 5.62e-15 71.2
Msa0530050 AT5G61600.1 54.839 62 27 1 6 66 86 147 1.54e-14 70.1
Msa0530050 AT5G64750.1 61.111 54 21 0 13 66 190 243 2.25e-14 70.9
Msa0530050 AT1G22810.1 48.529 68 31 2 5 68 11 78 2.63e-14 67.4
Msa0530050 AT5G51990.1 60.714 56 22 0 8 63 54 109 4.69e-14 68.6
Msa0530050 AT2G36450.1 60.345 58 22 1 8 64 15 72 4.95e-14 67.8
Msa0530050 AT1G71520.1 47.692 65 30 1 5 65 11 75 5.58e-14 66.6
Msa0530050 AT4G34410.1 67.241 58 19 0 8 65 136 193 8.64e-14 68.2
Msa0530050 AT5G07310.1 61.667 60 23 0 5 64 89 148 1.02e-13 68.2
Msa0530050 AT1G43160.1 63.636 66 23 1 1 66 55 119 1.05e-13 67.0
Msa0530050 AT1G77640.1 64.407 59 21 0 6 64 41 99 1.11e-13 67.8
Msa0530050 AT3G23240.1 51.613 62 29 1 3 63 77 138 2.34e-13 66.2
Msa0530050 AT3G14230.2 43.478 138 68 5 5 136 121 254 3.96e-13 67.4
Msa0530050 AT3G14230.3 43.478 138 68 5 5 136 120 253 4.03e-13 67.4
Msa0530050 AT3G14230.1 43.478 138 68 5 5 136 125 258 4.04e-13 67.4
Msa0530050 AT4G18450.1 55.000 60 25 2 6 63 108 167 8.35e-13 65.9
Msa0530050 AT1G53170.1 48.889 90 46 0 7 96 30 119 9.22e-13 64.3
Msa0530050 AT3G25890.1 68.421 38 12 0 10 47 133 170 9.66e-13 65.9
Msa0530050 AT3G25890.2 68.421 38 12 0 10 47 133 170 9.66e-13 65.9
Msa0530050 AT2G31230.1 50.820 61 29 1 5 64 83 143 1.58e-12 64.7
Msa0530050 AT1G77200.1 58.904 73 25 2 8 76 43 114 2.86e-12 63.9
Msa0530050 AT5G50080.2 65.000 60 21 0 5 64 83 142 3.10e-12 63.5
Msa0530050 AT5G50080.1 65.000 60 21 0 5 64 74 133 3.43e-12 63.2
Msa0530050 AT2G40220.1 66.667 57 19 0 7 63 54 110 4.07e-12 64.3
Msa0530050 AT1G33760.1 53.750 80 34 1 5 81 17 96 4.87e-12 62.4
Msa0530050 AT1G53910.1 63.333 60 22 0 5 64 122 181 4.89e-12 63.9
Msa0530050 AT1G53910.2 63.333 60 22 0 5 64 122 181 4.89e-12 63.9
Msa0530050 AT1G53910.3 63.333 60 22 0 5 64 120 179 5.00e-12 63.9
Msa0530050 AT1G63030.2 50.000 56 28 0 8 63 30 85 3.89e-11 59.7
Msa0530050 AT1G63030.1 50.000 56 28 0 8 63 30 85 3.89e-11 59.7
Msa0530050 AT1G64380.1 57.812 64 27 0 1 64 129 192 3.97e-11 61.2
Msa0530050 AT1G12610.1 50.000 56 28 0 8 63 30 85 9.46e-11 59.3

Find 55 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATAAGGTTTAGTAATTT+TGG 0.100391 4_1:-3987473 Msa0530050:three_prime_UTR
ATTCAAGAGTTGCTTGATTA+TGG 0.233710 4_1:-3987707 Msa0530050:CDS
ATTTGGGTTGTATGGGAAAT+TGG 0.249663 4_1:+3988057 None:intergenic
GGGAAATTGGTACGTGCTTT+TGG 0.268347 4_1:+3988070 None:intergenic
GCCAAAGACATTGGGGTTCT+TGG 0.280569 4_1:-3988971 Msa0530050:CDS
TTTGAGAGAGTGTGGTAGTA+TGG 0.288696 4_1:-3987520 Msa0530050:three_prime_UTR
TCACCTGTAATAAATGTATA+AGG 0.291811 4_1:-3987487 Msa0530050:three_prime_UTR
AAACCTTATACATTTATTAC+AGG 0.295968 4_1:+3987484 None:intergenic
GTGAAACTAGTTTAATTAGA+TGG 0.328749 4_1:-3987829 Msa0530050:CDS
GAAGAAGATTGTGGTCCATT+TGG 0.328768 4_1:+3988040 None:intergenic
GGGAAAGTGAATTACAATAA+AGG 0.337369 4_1:+3988930 None:intergenic
CCCAAGAACCCCAATGTCTT+TGG 0.344960 4_1:+3988970 None:intergenic
ACTACCACACTCTCTCAAAA+AGG 0.349460 4_1:+3987524 None:intergenic
TGTGGTCCATTTGGGTTGTA+TGG 0.370819 4_1:+3988049 None:intergenic
TTGAGAGAGTGTGGTAGTAT+GGG 0.380707 4_1:-3987519 Msa0530050:three_prime_UTR
AATAATTGTGTTGGGTTTGA+AGG 0.386713 4_1:-3987794 Msa0530050:CDS
TTGTGGTGGTTGTTGTTGTT+TGG 0.389253 4_1:+3987943 None:intergenic
CCAAAGACATTGGGGTTCTT+GGG 0.406444 4_1:-3988970 Msa0530050:CDS
TCAATTGAGCTTTGTTCTGT+TGG 0.406867 4_1:-3987683 Msa0530050:CDS
ATGTGATCATCTTCAAGAAC+AGG 0.413352 4_1:+3987740 None:intergenic
AGGTGTACGCCAAAGACATT+GGG 0.415032 4_1:-3988979 Msa0530050:CDS
AAGAAGATTGTGGTCCATTT+GGG 0.419292 4_1:+3988041 None:intergenic
GGAAAGTGAATTACAATAAA+GGG 0.420688 4_1:+3988931 None:intergenic
ACTATAGGAAGACAAGAATA+TGG 0.426325 4_1:-3988162 Msa0530050:intron
TCTCAGTGACTCTTCGTACC+AGG 0.454389 4_1:+3987605 None:intergenic
TTAATTAGATGGCTTGATGA+AGG 0.455274 4_1:-3987818 Msa0530050:CDS
TTATTGTGTGTTTGTTTCCA+CGG 0.500551 4_1:-3987434 Msa0530050:three_prime_UTR
ATGAAGGGAATAATTGTGTT+GGG 0.501184 4_1:-3987802 Msa0530050:CDS
AATTTCCCATACAACCCAAA+TGG 0.503068 4_1:-3988055 Msa0530050:CDS
AGGAAGACAAGAATATGGTT+AGG 0.513155 4_1:-3988157 Msa0530050:CDS
GTGGTCCATTTGGGTTGTAT+GGG 0.519874 4_1:+3988050 None:intergenic
GAGGTGTACGCCAAAGACAT+TGG 0.520907 4_1:-3988980 Msa0530050:CDS
ATAGCATTTAAGCCTTTCCC+TGG 0.521122 4_1:-3987623 Msa0530050:three_prime_UTR
TAATTAGATGGCTTGATGAA+GGG 0.525314 4_1:-3987817 Msa0530050:CDS
GATGAAGGGAATAATTGTGT+TGG 0.532564 4_1:-3987803 Msa0530050:CDS
TGAGAGAGTGTGGTAGTATG+GGG 0.537301 4_1:-3987518 Msa0530050:three_prime_UTR
AGACCACAACAACGTTATAG+AGG 0.546459 4_1:-3988999 Msa0530050:CDS
TGACTCTTCGTACCAGGGAA+AGG 0.559667 4_1:+3987611 None:intergenic
TCGTTTAGTTGACGATCATG+TGG 0.585365 4_1:-3987317 Msa0530050:three_prime_UTR
TGTTTGTTTCCACGGCAGAA+AGG 0.587424 4_1:-3987426 Msa0530050:three_prime_UTR
ACGTGAGAGCCTTTCTGCCG+TGG 0.592237 4_1:+3987417 None:intergenic
CTCAGTGACTCTTCGTACCA+GGG 0.602759 4_1:+3987606 None:intergenic
ACACCTCTATAACGTTGTTG+TGG 0.611286 4_1:+3988996 None:intergenic
TAAACGAACGTTTGAAACCA+CGG 0.614722 4_1:+3987333 None:intergenic
GAGAGAGTGTGGTAGTATGG+GGG 0.620401 4_1:-3987517 Msa0530050:three_prime_UTR
TTTGTCTATGGCAATGACAT+GGG 0.635554 4_1:-3987863 Msa0530050:CDS
GTCTATGGCAATGACATGGG+TGG 0.637989 4_1:-3987860 Msa0530050:CDS
CGTCTAGAGTGTTGCCACCG+TGG 0.643077 4_1:-3987350 Msa0530050:three_prime_UTR
AGCTTAGATGAAGAAGATTG+TGG 0.644613 4_1:+3988031 None:intergenic
AATGACATGGGTGGAACAAG+TGG 0.664936 4_1:-3987851 Msa0530050:CDS
GAGCATATGATGAAGCAGCA+AGG 0.668846 4_1:-3988105 Msa0530050:CDS
AAAGTTAAATAAGTGTCACA+TGG 0.713555 4_1:-3987987 Msa0530050:CDS
GAAGCAGCAAGGTTAATGTG+TGG 0.732232 4_1:-3988094 Msa0530050:CDS
GGTGTACGCCAAAGACATTG+GGG 0.746100 4_1:-3988978 Msa0530050:CDS
ACGAACGTTTGAAACCACGG+TGG 0.829556 4_1:+3987336 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTGATGAATATTTTTTT+TGG - chr4_1:3988181-3988200 Msa0530050:intron 10.0%
!!! AAATTGATGAATATTTTTTT+TGG - chr4_1:3988181-3988200 Msa0530050:intron 10.0%
!!! AAGTGAAATTAGTTATATTT+TGG + chr4_1:3987922-3987941 None:intergenic 15.0%
!!! TTTTTTCTTATAATTGAGTT+AGG - chr4_1:3988096-3988115 Msa0530050:CDS 15.0%
!! TGATTATATGATTATTACAA+AGG - chr4_1:3988148-3988167 Msa0530050:CDS 15.0%
!! GATTATATGATTATTACAAA+GGG - chr4_1:3988149-3988168 Msa0530050:CDS 15.0%
!!! AAGTGAAATTAGTTATATTT+TGG + chr4_1:3987922-3987941 None:intergenic 15.0%
!!! TTTTTTCTTATAATTGAGTT+AGG - chr4_1:3988096-3988115 Msa0530050:CDS 15.0%
!! TGATTATATGATTATTACAA+AGG - chr4_1:3988148-3988167 Msa0530050:CDS 15.0%
!! GATTATATGATTATTACAAA+GGG - chr4_1:3988149-3988168 Msa0530050:CDS 15.0%
!!! ATTATTAGAAAGGGTATTTA+TGG - chr4_1:3987641-3987660 Msa0530050:three_prime_UTR 20.0%
!!! TATTTCATTGAAGAGTATTT+TGG + chr4_1:3987995-3988014 None:intergenic 20.0%
!!! ATTTTCTTGATGTAATCAAA+AGG + chr4_1:3988038-3988057 None:intergenic 20.0%
!!! GAATATTTTTTTTGGACTAT+AGG - chr4_1:3988189-3988208 Msa0530050:intron 20.0%
!!! TTTGATATGAACTTTGTTTT+AGG + chr4_1:3988796-3988815 None:intergenic 20.0%
!! AAACCTTATACATTTATTAC+AGG + chr4_1:3988885-3988904 None:intergenic 20.0%
!!! TGTATAAGGTTTAGTAATTT+TGG - chr4_1:3988893-3988912 Msa0530050:intron 20.0%
!!! ATTATTAGAAAGGGTATTTA+TGG - chr4_1:3987641-3987660 Msa0530050:three_prime_UTR 20.0%
!!! TATTTCATTGAAGAGTATTT+TGG + chr4_1:3987995-3988014 None:intergenic 20.0%
!!! ATTTTCTTGATGTAATCAAA+AGG + chr4_1:3988038-3988057 None:intergenic 20.0%
!!! GAATATTTTTTTTGGACTAT+AGG - chr4_1:3988189-3988208 Msa0530050:intron 20.0%
!!! TTTGATATGAACTTTGTTTT+AGG + chr4_1:3988796-3988815 None:intergenic 20.0%
!! AAACCTTATACATTTATTAC+AGG + chr4_1:3988885-3988904 None:intergenic 20.0%
!!! TGTATAAGGTTTAGTAATTT+TGG - chr4_1:3988893-3988912 Msa0530050:intron 20.0%
!!! GTTTTTTTGTTTCATCATCA+TGG - chr4_1:3987342-3987361 Msa0530050:three_prime_UTR 25.0%
! GGAAAGTGAATTACAATAAA+GGG + chr4_1:3987438-3987457 None:intergenic 25.0%
! TGATCACTTGATTATTAGAA+AGG - chr4_1:3987631-3987650 Msa0530050:three_prime_UTR 25.0%
! GATCACTTGATTATTAGAAA+GGG - chr4_1:3987632-3987651 Msa0530050:three_prime_UTR 25.0%
! TACATCAAGAAAATTGAACA+AGG - chr4_1:3988044-3988063 Msa0530050:CDS 25.0%
! AAAGTTAAATAAGTGTCACA+TGG - chr4_1:3988379-3988398 Msa0530050:intron 25.0%
!! AATAGTAACACTTTTGTCTA+TGG - chr4_1:3988491-3988510 Msa0530050:intron 25.0%
!! GTGAAACTAGTTTAATTAGA+TGG - chr4_1:3988537-3988556 Msa0530050:intron 25.0%
! TCACCTGTAATAAATGTATA+AGG - chr4_1:3988879-3988898 Msa0530050:intron 25.0%
!!! GTTTTTTTGTTTCATCATCA+TGG - chr4_1:3987342-3987361 Msa0530050:three_prime_UTR 25.0%
! GGAAAGTGAATTACAATAAA+GGG + chr4_1:3987438-3987457 None:intergenic 25.0%
! TGATCACTTGATTATTAGAA+AGG - chr4_1:3987631-3987650 Msa0530050:three_prime_UTR 25.0%
! GATCACTTGATTATTAGAAA+GGG - chr4_1:3987632-3987651 Msa0530050:three_prime_UTR 25.0%
! TACATCAAGAAAATTGAACA+AGG - chr4_1:3988044-3988063 Msa0530050:CDS 25.0%
! AAAGTTAAATAAGTGTCACA+TGG - chr4_1:3988379-3988398 Msa0530050:intron 25.0%
!! AATAGTAACACTTTTGTCTA+TGG - chr4_1:3988491-3988510 Msa0530050:intron 25.0%
!! GTGAAACTAGTTTAATTAGA+TGG - chr4_1:3988537-3988556 Msa0530050:intron 25.0%
! TCACCTGTAATAAATGTATA+AGG - chr4_1:3988879-3988898 Msa0530050:intron 25.0%
GGGAAAGTGAATTACAATAA+AGG + chr4_1:3987439-3987458 None:intergenic 30.0%
! TTACTGTGATTTTGTGAAAC+TGG + chr4_1:3987768-3987787 None:intergenic 30.0%
! AGATGCGATATTTTACATTC+TGG - chr4_1:3987799-3987818 Msa0530050:CDS 30.0%
! TTTTCACAAGCAACACATTA+AGG + chr4_1:3987842-3987861 None:intergenic 30.0%
ACTATAGGAAGACAAGAATA+TGG - chr4_1:3988204-3988223 Msa0530050:intron 30.0%
! CTTTGTGTTGAAACTTTTTG+TGG + chr4_1:3988455-3988474 None:intergenic 30.0%
TTAATTAGATGGCTTGATGA+AGG - chr4_1:3988548-3988567 Msa0530050:intron 30.0%
TAATTAGATGGCTTGATGAA+GGG - chr4_1:3988549-3988568 Msa0530050:intron 30.0%
ATGAAGGGAATAATTGTGTT+GGG - chr4_1:3988564-3988583 Msa0530050:intron 30.0%
AATAATTGTGTTGGGTTTGA+AGG - chr4_1:3988572-3988591 Msa0530050:intron 30.0%
ATTCAAGAGTTGCTTGATTA+TGG - chr4_1:3988659-3988678 Msa0530050:intron 30.0%
TTATTGTGTGTTTGTTTCCA+CGG - chr4_1:3988932-3988951 Msa0530050:intron 30.0%
GGGAAAGTGAATTACAATAA+AGG + chr4_1:3987439-3987458 None:intergenic 30.0%
! TTACTGTGATTTTGTGAAAC+TGG + chr4_1:3987768-3987787 None:intergenic 30.0%
! AGATGCGATATTTTACATTC+TGG - chr4_1:3987799-3987818 Msa0530050:CDS 30.0%
! TTTTCACAAGCAACACATTA+AGG + chr4_1:3987842-3987861 None:intergenic 30.0%
ACTATAGGAAGACAAGAATA+TGG - chr4_1:3988204-3988223 Msa0530050:intron 30.0%
! CTTTGTGTTGAAACTTTTTG+TGG + chr4_1:3988455-3988474 None:intergenic 30.0%
TTAATTAGATGGCTTGATGA+AGG - chr4_1:3988548-3988567 Msa0530050:intron 30.0%
TAATTAGATGGCTTGATGAA+GGG - chr4_1:3988549-3988568 Msa0530050:intron 30.0%
ATGAAGGGAATAATTGTGTT+GGG - chr4_1:3988564-3988583 Msa0530050:intron 30.0%
AATAATTGTGTTGGGTTTGA+AGG - chr4_1:3988572-3988591 Msa0530050:intron 30.0%
ATTCAAGAGTTGCTTGATTA+TGG - chr4_1:3988659-3988678 Msa0530050:intron 30.0%
TTATTGTGTGTTTGTTTCCA+CGG - chr4_1:3988932-3988951 Msa0530050:intron 30.0%
!! TGAAAGTGTTGAAGAGTGAA+GGG + chr4_1:3987459-3987478 None:intergenic 35.0%
!! ATGAAAGTGTTGAAGAGTGA+AGG + chr4_1:3987460-3987479 None:intergenic 35.0%
CAACACATTAAGGCAATGTT+TGG + chr4_1:3987832-3987851 None:intergenic 35.0%
AGGAAGACAAGAATATGGTT+AGG - chr4_1:3988209-3988228 Msa0530050:intron 35.0%
!! ATTTGGGTTGTATGGGAAAT+TGG + chr4_1:3988312-3988331 None:intergenic 35.0%
AATTTCCCATACAACCCAAA+TGG - chr4_1:3988311-3988330 Msa0530050:intron 35.0%
AAGAAGATTGTGGTCCATTT+GGG + chr4_1:3988328-3988347 None:intergenic 35.0%
AGCTTAGATGAAGAAGATTG+TGG + chr4_1:3988338-3988357 None:intergenic 35.0%
! ACTTTTTGTGGCTCTTTTTG+TGG + chr4_1:3988443-3988462 None:intergenic 35.0%
! TTTTGTCTATGGCAATGACA+TGG - chr4_1:3988502-3988521 Msa0530050:intron 35.0%
TTTGTCTATGGCAATGACAT+GGG - chr4_1:3988503-3988522 Msa0530050:intron 35.0%
GATGAAGGGAATAATTGTGT+TGG - chr4_1:3988563-3988582 Msa0530050:intron 35.0%
ATGTGATCATCTTCAAGAAC+AGG + chr4_1:3988629-3988648 None:intergenic 35.0%
!! TCAATTGAGCTTTGTTCTGT+TGG - chr4_1:3988683-3988702 Msa0530050:intron 35.0%
!!! AACTTTGTTTTAGGCGAGTT+GGG + chr4_1:3988787-3988806 None:intergenic 35.0%
! TAAACGAACGTTTGAAACCA+CGG + chr4_1:3989036-3989055 None:intergenic 35.0%
!! TGAAAGTGTTGAAGAGTGAA+GGG + chr4_1:3987459-3987478 None:intergenic 35.0%
!! ATGAAAGTGTTGAAGAGTGA+AGG + chr4_1:3987460-3987479 None:intergenic 35.0%
CAACACATTAAGGCAATGTT+TGG + chr4_1:3987832-3987851 None:intergenic 35.0%
AGGAAGACAAGAATATGGTT+AGG - chr4_1:3988209-3988228 Msa0530050:intron 35.0%
!! ATTTGGGTTGTATGGGAAAT+TGG + chr4_1:3988312-3988331 None:intergenic 35.0%
AATTTCCCATACAACCCAAA+TGG - chr4_1:3988311-3988330 Msa0530050:intron 35.0%
AAGAAGATTGTGGTCCATTT+GGG + chr4_1:3988328-3988347 None:intergenic 35.0%
AGCTTAGATGAAGAAGATTG+TGG + chr4_1:3988338-3988357 None:intergenic 35.0%
! ACTTTTTGTGGCTCTTTTTG+TGG + chr4_1:3988443-3988462 None:intergenic 35.0%
! TTTTGTCTATGGCAATGACA+TGG - chr4_1:3988502-3988521 Msa0530050:intron 35.0%
TTTGTCTATGGCAATGACAT+GGG - chr4_1:3988503-3988522 Msa0530050:intron 35.0%
GATGAAGGGAATAATTGTGT+TGG - chr4_1:3988563-3988582 Msa0530050:intron 35.0%
ATGTGATCATCTTCAAGAAC+AGG + chr4_1:3988629-3988648 None:intergenic 35.0%
!! TCAATTGAGCTTTGTTCTGT+TGG - chr4_1:3988683-3988702 Msa0530050:intron 35.0%
!!! AACTTTGTTTTAGGCGAGTT+GGG + chr4_1:3988787-3988806 None:intergenic 35.0%
! TAAACGAACGTTTGAAACCA+CGG + chr4_1:3989036-3989055 None:intergenic 35.0%
AGACCACAACAACGTTATAG+AGG - chr4_1:3987367-3987386 Msa0530050:three_prime_UTR 40.0%
ACACCTCTATAACGTTGTTG+TGG + chr4_1:3987373-3987392 None:intergenic 40.0%
TCTCCCTCTTAGTATGTGTT+CGG - chr4_1:3987692-3987711 Msa0530050:CDS 40.0%
AGACCGAACACATACTAAGA+GGG + chr4_1:3987698-3987717 None:intergenic 40.0%
CTAACTTCTATTTCACCGCA+CGG + chr4_1:3987740-3987759 None:intergenic 40.0%
GAAGAAGATTGTGGTCCATT+TGG + chr4_1:3988329-3988348 None:intergenic 40.0%
! TTGTGGTGGTTGTTGTTGTT+TGG + chr4_1:3988426-3988445 None:intergenic 40.0%
! TTTTGTGGCTCTTTTTGTGG+TGG + chr4_1:3988440-3988459 None:intergenic 40.0%
ATAGCATTTAAGCCTTTCCC+TGG - chr4_1:3988743-3988762 Msa0530050:intron 40.0%
!!! GAACTTTGTTTTAGGCGAGT+TGG + chr4_1:3988788-3988807 None:intergenic 40.0%
!! ACTCTCTCAAAAAGGTGTCA+TGG + chr4_1:3988837-3988856 None:intergenic 40.0%
ACTACCACACTCTCTCAAAA+AGG + chr4_1:3988845-3988864 None:intergenic 40.0%
! TTTGAGAGAGTGTGGTAGTA+TGG - chr4_1:3988846-3988865 Msa0530050:intron 40.0%
! TTGAGAGAGTGTGGTAGTAT+GGG - chr4_1:3988847-3988866 Msa0530050:intron 40.0%
TCGTTTAGTTGACGATCATG+TGG - chr4_1:3989049-3989068 Msa0530050:five_prime_UTR 40.0%
AGACCACAACAACGTTATAG+AGG - chr4_1:3987367-3987386 Msa0530050:three_prime_UTR 40.0%
ACACCTCTATAACGTTGTTG+TGG + chr4_1:3987373-3987392 None:intergenic 40.0%
TCTCCCTCTTAGTATGTGTT+CGG - chr4_1:3987692-3987711 Msa0530050:CDS 40.0%
AGACCGAACACATACTAAGA+GGG + chr4_1:3987698-3987717 None:intergenic 40.0%
CTAACTTCTATTTCACCGCA+CGG + chr4_1:3987740-3987759 None:intergenic 40.0%
GAAGAAGATTGTGGTCCATT+TGG + chr4_1:3988329-3988348 None:intergenic 40.0%
! TTGTGGTGGTTGTTGTTGTT+TGG + chr4_1:3988426-3988445 None:intergenic 40.0%
! TTTTGTGGCTCTTTTTGTGG+TGG + chr4_1:3988440-3988459 None:intergenic 40.0%
ATAGCATTTAAGCCTTTCCC+TGG - chr4_1:3988743-3988762 Msa0530050:intron 40.0%
!!! GAACTTTGTTTTAGGCGAGT+TGG + chr4_1:3988788-3988807 None:intergenic 40.0%
!! ACTCTCTCAAAAAGGTGTCA+TGG + chr4_1:3988837-3988856 None:intergenic 40.0%
ACTACCACACTCTCTCAAAA+AGG + chr4_1:3988845-3988864 None:intergenic 40.0%
! TTTGAGAGAGTGTGGTAGTA+TGG - chr4_1:3988846-3988865 Msa0530050:intron 40.0%
! TTGAGAGAGTGTGGTAGTAT+GGG - chr4_1:3988847-3988866 Msa0530050:intron 40.0%
TCGTTTAGTTGACGATCATG+TGG - chr4_1:3989049-3989068 Msa0530050:five_prime_UTR 40.0%
AGGTGTACGCCAAAGACATT+GGG - chr4_1:3987387-3987406 Msa0530050:three_prime_UTR 45.0%
CCAAAGACATTGGGGTTCTT+GGG - chr4_1:3987396-3987415 Msa0530050:three_prime_UTR 45.0%
CAGACCGAACACATACTAAG+AGG + chr4_1:3987699-3987718 None:intergenic 45.0%
CTCTTAGTATGTGTTCGGTC+TGG - chr4_1:3987697-3987716 Msa0530050:CDS 45.0%
!!! TATGTGTTCGGTCTGGCTTT+TGG - chr4_1:3987704-3987723 Msa0530050:CDS 45.0%
! TTTGGTTTAACGTAGCCGTG+CGG - chr4_1:3987722-3987741 Msa0530050:CDS 45.0%
CGTGCGGTGAAATAGAAGTT+AGG - chr4_1:3987738-3987757 Msa0530050:CDS 45.0%
GAGCATATGATGAAGCAGCA+AGG - chr4_1:3988261-3988280 Msa0530050:intron 45.0%
GAAGCAGCAAGGTTAATGTG+TGG - chr4_1:3988272-3988291 Msa0530050:intron 45.0%
! GGGAAATTGGTACGTGCTTT+TGG + chr4_1:3988299-3988318 None:intergenic 45.0%
!! GTGGTCCATTTGGGTTGTAT+GGG + chr4_1:3988319-3988338 None:intergenic 45.0%
!! TGTGGTCCATTTGGGTTGTA+TGG + chr4_1:3988320-3988339 None:intergenic 45.0%
AATGACATGGGTGGAACAAG+TGG - chr4_1:3988515-3988534 Msa0530050:intron 45.0%
!! GACACCTTTTTGAGAGAGTG+TGG - chr4_1:3988838-3988857 Msa0530050:intron 45.0%
! TGAGAGAGTGTGGTAGTATG+GGG - chr4_1:3988848-3988867 Msa0530050:intron 45.0%
TGTTTGTTTCCACGGCAGAA+AGG - chr4_1:3988940-3988959 Msa0530050:intron 45.0%
AGGTGTACGCCAAAGACATT+GGG - chr4_1:3987387-3987406 Msa0530050:three_prime_UTR 45.0%
CCAAAGACATTGGGGTTCTT+GGG - chr4_1:3987396-3987415 Msa0530050:three_prime_UTR 45.0%
CAGACCGAACACATACTAAG+AGG + chr4_1:3987699-3987718 None:intergenic 45.0%
CTCTTAGTATGTGTTCGGTC+TGG - chr4_1:3987697-3987716 Msa0530050:CDS 45.0%
!!! TATGTGTTCGGTCTGGCTTT+TGG - chr4_1:3987704-3987723 Msa0530050:CDS 45.0%
! TTTGGTTTAACGTAGCCGTG+CGG - chr4_1:3987722-3987741 Msa0530050:CDS 45.0%
CGTGCGGTGAAATAGAAGTT+AGG - chr4_1:3987738-3987757 Msa0530050:CDS 45.0%
GAGCATATGATGAAGCAGCA+AGG - chr4_1:3988261-3988280 Msa0530050:intron 45.0%
GAAGCAGCAAGGTTAATGTG+TGG - chr4_1:3988272-3988291 Msa0530050:intron 45.0%
! GGGAAATTGGTACGTGCTTT+TGG + chr4_1:3988299-3988318 None:intergenic 45.0%
!! GTGGTCCATTTGGGTTGTAT+GGG + chr4_1:3988319-3988338 None:intergenic 45.0%
!! TGTGGTCCATTTGGGTTGTA+TGG + chr4_1:3988320-3988339 None:intergenic 45.0%
AATGACATGGGTGGAACAAG+TGG - chr4_1:3988515-3988534 Msa0530050:intron 45.0%
!! GACACCTTTTTGAGAGAGTG+TGG - chr4_1:3988838-3988857 Msa0530050:intron 45.0%
! TGAGAGAGTGTGGTAGTATG+GGG - chr4_1:3988848-3988867 Msa0530050:intron 45.0%
TGTTTGTTTCCACGGCAGAA+AGG - chr4_1:3988940-3988959 Msa0530050:intron 45.0%
!!! TTATTTAATGTTTTTTTTTT+TGG - chr4_1:3987941-3987960 Msa0530050:CDS 5.0%
!!! TTATTTAATGTTTTTTTTTT+TGG - chr4_1:3987941-3987960 Msa0530050:CDS 5.0%
GAGGTGTACGCCAAAGACAT+TGG - chr4_1:3987386-3987405 Msa0530050:three_prime_UTR 50.0%
GGTGTACGCCAAAGACATTG+GGG - chr4_1:3987388-3987407 Msa0530050:three_prime_UTR 50.0%
GCCAAAGACATTGGGGTTCT+TGG - chr4_1:3987395-3987414 Msa0530050:three_prime_UTR 50.0%
CCCAAGAACCCCAATGTCTT+TGG + chr4_1:3987399-3987418 None:intergenic 50.0%
GTCTATGGCAATGACATGGG+TGG - chr4_1:3988506-3988525 Msa0530050:intron 50.0%
TGACTCTTCGTACCAGGGAA+AGG + chr4_1:3988758-3988777 None:intergenic 50.0%
CTCAGTGACTCTTCGTACCA+GGG + chr4_1:3988763-3988782 None:intergenic 50.0%
TCTCAGTGACTCTTCGTACC+AGG + chr4_1:3988764-3988783 None:intergenic 50.0%
! GAGAGAGTGTGGTAGTATGG+GGG - chr4_1:3988849-3988868 Msa0530050:intron 50.0%
! ACGAACGTTTGAAACCACGG+TGG + chr4_1:3989033-3989052 None:intergenic 50.0%
GAGGTGTACGCCAAAGACAT+TGG - chr4_1:3987386-3987405 Msa0530050:three_prime_UTR 50.0%
GGTGTACGCCAAAGACATTG+GGG - chr4_1:3987388-3987407 Msa0530050:three_prime_UTR 50.0%
GCCAAAGACATTGGGGTTCT+TGG - chr4_1:3987395-3987414 Msa0530050:three_prime_UTR 50.0%
CCCAAGAACCCCAATGTCTT+TGG + chr4_1:3987399-3987418 None:intergenic 50.0%
GTCTATGGCAATGACATGGG+TGG - chr4_1:3988506-3988525 Msa0530050:intron 50.0%
TGACTCTTCGTACCAGGGAA+AGG + chr4_1:3988758-3988777 None:intergenic 50.0%
CTCAGTGACTCTTCGTACCA+GGG + chr4_1:3988763-3988782 None:intergenic 50.0%
TCTCAGTGACTCTTCGTACC+AGG + chr4_1:3988764-3988783 None:intergenic 50.0%
! GAGAGAGTGTGGTAGTATGG+GGG - chr4_1:3988849-3988868 Msa0530050:intron 50.0%
! ACGAACGTTTGAAACCACGG+TGG + chr4_1:3989033-3989052 None:intergenic 50.0%
ACGTGAGAGCCTTTCTGCCG+TGG + chr4_1:3988952-3988971 None:intergenic 60.0%
!! CGTCTAGAGTGTTGCCACCG+TGG - chr4_1:3989016-3989035 Msa0530050:exon 60.0%
ACGTGAGAGCCTTTCTGCCG+TGG + chr4_1:3988952-3988971 None:intergenic 60.0%
!! CGTCTAGAGTGTTGCCACCG+TGG - chr4_1:3989016-3989035 Msa0530050:exon 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 3987270 3989118 3987270 ID=Msa0530050;Name=Msa0530050
chr4_1 mRNA 3987270 3989118 3987270 ID=Msa0530050-mRNA-1;Parent=Msa0530050;Name=Msa0530050-mRNA-1;_AED=0.00;_eAED=0.00;_QI=91|1|1|1|1|1|2|403|195
chr4_1 exon 3987270 3988177 3987270 ID=Msa0530050-mRNA-1:exon:1164;Parent=Msa0530050-mRNA-1
chr4_1 exon 3988945 3989118 3988945 ID=Msa0530050-mRNA-1:exon:1163;Parent=Msa0530050-mRNA-1
chr4_1 five_prime_UTR 3989028 3989118 3989028 ID=Msa0530050-mRNA-1:five_prime_utr;Parent=Msa0530050-mRNA-1
chr4_1 CDS 3988945 3989027 3988945 ID=Msa0530050-mRNA-1:cds;Parent=Msa0530050-mRNA-1
chr4_1 CDS 3987673 3988177 3987673 ID=Msa0530050-mRNA-1:cds;Parent=Msa0530050-mRNA-1
chr4_1 three_prime_UTR 3987270 3987672 3987270 ID=Msa0530050-mRNA-1:three_prime_utr;Parent=Msa0530050-mRNA-1
Gene Sequence

>Msa0530050

ATGGCAAGACCACAACAACGTTATAGAGGTGTACGCCAAAGACATTGGGGTTCTTGGGTCTCTGAAATTCGTCACCCTTTATTGAAGACAAGAATATGGTTAGGAACATTTGAAACAGCAGAAGATGCAGCAAGAGCATATGATGAAGCAGCAAGGTTAATGTGTGGACCAAAAGCACGTACCAATTTCCCATACAACCCAAATGGACCACAATCTTCTTCATCTAAGCTTCTTTCAGCAACTTTAACTGCAAAGTTAAATAAGTGTCACATGGCGTCTCTTTCTCTTCAAATGACCAAACAACAACAACCACCACAAAAAGAGCCACAAAAAGTTTCAACACAAAGTTTCAATTCTTCAATTAATAGTAACACTTTTGTCTATGGCAATGACATGGGTGGAACAAGTGGTGAAACTAGTTTAATTAGATGGCTTGATGAAGGGAATAATTGTGTTGGGTTTGAAGGTCAAGTTGAAGTTTCTCATCAACAATTTCAACCTGTTCTTGAAGATGATCACATTGAACAAATGATTCAAGAGTTGCTTGATTATGGTTCAATTGAGCTTTGTTCTGTTGGTTCATCTTAG
Protein sequence

>Msa0530050

MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNGPQSSSSKLLSATLTAKLNKCHMASLSLQMTKQQQPPQKEPQKVSTQSFNSSINSNTFVYGNDMGGTSGETSLIRWLDEGNNCVGFEGQVEVSHQQFQPVLEDDHIEQMIQELLDYGSIELCSVGSS*