Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693490 | XP_003607906.1 | 97.093 | 172 | 5 | 0 | 1 | 172 | 1 | 172 | 5.17e-119 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693490 | sp|Q9SSL1|CAR7_ARATH | 55.488 | 164 | 73 | 0 | 1 | 164 | 1 | 164 | 2.54e-62 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693490 | G7JJZ3 | 97.093 | 172 | 5 | 0 | 1 | 172 | 1 | 172 | 2.47e-119 | 343 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008850 | Msa0693490 | 0.824580 | 7.473488e-54 | -8.615850e-47 |
| Msa0038310 | Msa0693490 | 0.817375 | 3.406899e-52 | -8.615850e-47 |
| Msa0610770 | Msa0693490 | 0.937097 | 6.021632e-98 | -8.615850e-47 |
| Msa0650650 | Msa0693490 | 0.847631 | 1.023248e-59 | -8.615850e-47 |
| Msa0650740 | Msa0693490 | 0.844841 | 5.889434e-59 | -8.615850e-47 |
| Msa0651320 | Msa0693490 | 0.932778 | 5.105797e-95 | -8.615850e-47 |
| Msa0693490 | Msa0713210 | 0.804667 | 1.935440e-49 | -8.615850e-47 |
| Msa0693490 | Msa0754350 | 0.802061 | 6.706216e-49 | -8.615850e-47 |
| Msa0693490 | Msa0755080 | 0.815377 | 9.537641e-52 | -8.615850e-47 |
| Msa0693490 | Msa0755090 | 0.847863 | 8.833231e-60 | -8.615850e-47 |
| Msa0693490 | Msa0796950 | 0.808540 | 2.945036e-50 | -8.615850e-47 |
| Msa0693490 | Msa0797000 | 0.810623 | 1.051413e-50 | -8.615850e-47 |
| Msa0693490 | Msa0834450 | 0.820459 | 6.783686e-53 | -8.615850e-47 |
| Msa0693490 | Msa0834460 | 0.848655 | 5.338028e-60 | -8.615850e-47 |
| Msa0693490 | Msa1120620 | 0.827570 | 1.454695e-54 | -8.615850e-47 |
| Msa0693490 | Msa1157020 | 0.829159 | 6.015639e-55 | -8.615850e-47 |
| Msa0693490 | Msa1157920 | 0.834824 | 2.397702e-56 | -8.615850e-47 |
| Msa0693490 | Msa1211390 | 0.841256 | 5.306530e-58 | -8.615850e-47 |
| Msa0693490 | Msa1219780 | -0.807482 | 4.947424e-50 | -8.615850e-47 |
| Msa0693490 | Msa1222030 | -0.815344 | 9.702393e-52 | -8.615850e-47 |
| Msa0693490 | Msa1282210 | 0.804589 | 2.008814e-49 | -8.615850e-47 |
| Msa0693490 | Msa1284390 | 0.813000 | 3.193905e-51 | -8.615850e-47 |
| Msa0693490 | Msa1383480 | 0.826204 | 3.083780e-54 | -8.615850e-47 |
| Msa0693490 | Msa1407210 | -0.810319 | 1.222947e-50 | -8.615850e-47 |
| Msa0223100 | Msa0693490 | 0.829585 | 4.740370e-55 | -8.615850e-47 |
| Msa0223290 | Msa0693490 | 0.813447 | 2.548168e-51 | -8.615850e-47 |
| Msa0223380 | Msa0693490 | 0.823782 | 1.150601e-53 | -8.615850e-47 |
| Msa0416320 | Msa0693490 | 0.827725 | 1.334933e-54 | -8.615850e-47 |
| Msa0448120 | Msa0693490 | 0.806866 | 6.679902e-50 | -8.615850e-47 |
| Msa0471790 | Msa0693490 | 0.806910 | 6.539950e-50 | -8.615850e-47 |
| Msa0288240 | Msa0693490 | 0.817139 | 3.850083e-52 | -8.615850e-47 |
| Msa0302650 | Msa0693490 | 0.810439 | 1.152125e-50 | -8.615850e-47 |
| Msa0336270 | Msa0693490 | 0.821598 | 3.707698e-53 | -8.615850e-47 |
| Msa0339870 | Msa0693490 | 0.804753 | 1.857178e-49 | -8.615850e-47 |
| Msa0362060 | Msa0693490 | 0.800913 | 1.153005e-48 | -8.615850e-47 |
| Msa0491500 | Msa0693490 | 0.803492 | 3.397738e-49 | -8.615850e-47 |
| Msa0530380 | Msa0693490 | 0.816637 | 4.989854e-52 | -8.615850e-47 |
| Msa0579340 | Msa0693490 | 0.850037 | 2.199296e-60 | -8.615850e-47 |
| Msa0581920 | Msa0693490 | 0.900287 | 8.517210e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693490 | MtrunA17_Chr4g0043861 | 97.093 | 172 | 5 | 0 | 1 | 172 | 1 | 172 | 4.75e-123 | 343 |
| Msa0693490 | MtrunA17_Chr1g0160811 | 66.871 | 163 | 53 | 1 | 3 | 164 | 4 | 166 | 1.25e-76 | 226 |
| Msa0693490 | MtrunA17_Chr3g0111361 | 54.601 | 163 | 74 | 0 | 1 | 163 | 1 | 163 | 3.52e-64 | 194 |
| Msa0693490 | MtrunA17_Chr8g0393081 | 51.220 | 164 | 80 | 0 | 1 | 164 | 17 | 180 | 5.77e-58 | 179 |
| Msa0693490 | MtrunA17_Chr2g0280981 | 51.235 | 162 | 79 | 0 | 3 | 164 | 2 | 163 | 1.38e-57 | 177 |
| Msa0693490 | MtrunA17_Chr6g0478401 | 49.390 | 164 | 83 | 0 | 1 | 164 | 13 | 176 | 7.57e-56 | 174 |
| Msa0693490 | MtrunA17_Chr8g0380381 | 40.000 | 160 | 95 | 1 | 1 | 159 | 85 | 244 | 1.73e-36 | 126 |
| Msa0693490 | MtrunA17_Chr8g0352751 | 37.654 | 162 | 100 | 1 | 1 | 161 | 1 | 162 | 2.28e-33 | 116 |
| Msa0693490 | MtrunA17_Chr2g0292461 | 38.889 | 162 | 94 | 3 | 1 | 159 | 168 | 327 | 4.15e-32 | 117 |
| Msa0693490 | MtrunA17_Chr3g0083541 | 37.952 | 166 | 94 | 2 | 1 | 161 | 239 | 400 | 1.72e-30 | 114 |
| Msa0693490 | MtrunA17_Chr2g0290631 | 38.158 | 152 | 92 | 1 | 1 | 150 | 1 | 152 | 1.66e-29 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0693490 | AT1G70810.1 | 55.488 | 164 | 73 | 0 | 1 | 164 | 1 | 164 | 2.59e-63 | 192 |
| Msa0693490 | AT1G48590.4 | 55.090 | 167 | 72 | 1 | 1 | 167 | 6 | 169 | 1.21e-61 | 188 |
| Msa0693490 | AT1G48590.1 | 55.090 | 167 | 72 | 1 | 1 | 167 | 6 | 169 | 1.21e-61 | 188 |
| Msa0693490 | AT1G48590.2 | 55.090 | 167 | 72 | 1 | 1 | 167 | 37 | 200 | 1.46e-61 | 189 |
| Msa0693490 | AT1G70790.3 | 53.659 | 164 | 74 | 1 | 5 | 166 | 6 | 169 | 6.87e-60 | 184 |
| Msa0693490 | AT1G70790.2 | 53.659 | 164 | 74 | 1 | 5 | 166 | 6 | 169 | 6.87e-60 | 184 |
| Msa0693490 | AT1G70790.1 | 53.659 | 164 | 74 | 1 | 5 | 166 | 6 | 169 | 6.87e-60 | 184 |
| Msa0693490 | AT3G17980.1 | 51.829 | 164 | 79 | 0 | 1 | 164 | 13 | 176 | 1.34e-58 | 181 |
| Msa0693490 | AT1G23140.1 | 51.852 | 162 | 78 | 0 | 1 | 162 | 1 | 162 | 3.32e-58 | 179 |
| Msa0693490 | AT1G73580.1 | 48.780 | 164 | 84 | 0 | 1 | 164 | 4 | 167 | 5.90e-58 | 179 |
| Msa0693490 | AT2G01540.1 | 53.659 | 164 | 69 | 2 | 5 | 166 | 6 | 164 | 1.15e-57 | 179 |
| Msa0693490 | AT1G70800.1 | 50.955 | 157 | 77 | 0 | 1 | 157 | 10 | 166 | 2.99e-55 | 172 |
| Msa0693490 | AT1G66360.1 | 45.402 | 174 | 93 | 1 | 1 | 172 | 1 | 174 | 2.90e-53 | 167 |
| Msa0693490 | AT5G37740.1 | 46.707 | 167 | 86 | 1 | 1 | 164 | 1 | 167 | 1.29e-51 | 163 |
| Msa0693490 | AT5G37740.2 | 44.068 | 177 | 86 | 2 | 1 | 164 | 1 | 177 | 3.50e-48 | 154 |
| Msa0693490 | AT1G70790.4 | 55.385 | 130 | 56 | 1 | 39 | 166 | 3 | 132 | 3.64e-46 | 148 |
| Msa0693490 | AT1G48590.3 | 45.509 | 167 | 56 | 2 | 1 | 167 | 37 | 168 | 3.21e-43 | 141 |
| Msa0693490 | AT4G05330.2 | 41.875 | 160 | 88 | 3 | 1 | 157 | 140 | 297 | 2.85e-34 | 122 |
| Msa0693490 | AT4G21160.2 | 41.875 | 160 | 88 | 3 | 1 | 157 | 176 | 333 | 1.04e-33 | 122 |
| Msa0693490 | AT4G21160.3 | 41.875 | 160 | 88 | 3 | 1 | 157 | 176 | 333 | 1.04e-33 | 122 |
| Msa0693490 | AT4G21160.1 | 41.875 | 160 | 88 | 3 | 1 | 157 | 176 | 333 | 1.04e-33 | 122 |
| Msa0693490 | AT4G21160.4 | 41.875 | 160 | 88 | 3 | 1 | 157 | 176 | 333 | 1.04e-33 | 122 |
| Msa0693490 | AT4G05330.3 | 41.875 | 160 | 88 | 3 | 1 | 157 | 175 | 332 | 1.04e-33 | 122 |
| Msa0693490 | AT4G05330.1 | 41.875 | 160 | 88 | 3 | 1 | 157 | 175 | 332 | 1.04e-33 | 122 |
| Msa0693490 | AT3G07940.1 | 39.506 | 162 | 97 | 1 | 1 | 161 | 224 | 385 | 2.88e-32 | 119 |
| Msa0693490 | AT5G47710.1 | 37.500 | 160 | 98 | 2 | 1 | 158 | 1 | 160 | 1.93e-31 | 111 |
| Msa0693490 | AT5G47710.2 | 37.500 | 160 | 98 | 2 | 1 | 158 | 1 | 160 | 1.93e-31 | 111 |
| Msa0693490 | AT5G47710.3 | 37.500 | 160 | 98 | 2 | 1 | 158 | 1 | 160 | 1.93e-31 | 111 |
| Msa0693490 | AT5G47710.4 | 37.500 | 160 | 98 | 2 | 1 | 158 | 1 | 160 | 1.93e-31 | 111 |
Find 44 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATCTTAAACTCATTTCT+TGG | 0.237962 | 4_4:-62417388 | None:intergenic |
| TTTCACTGTGGACGACAAAA+TGG | 0.248123 | 4_4:+62417211 | Msa0693490:CDS |
| TCATTATCAAATTAAGATTA+AGG | 0.276142 | 4_4:-62417596 | None:intergenic |
| GTCAGTTCTTCATTCCATTC+AGG | 0.282274 | 4_4:-62416366 | None:intergenic |
| ATCTTCACACATTGGAGATA+TGG | 0.313339 | 4_4:-62417257 | None:intergenic |
| GTTTCGATGGCAAACATTCT+AGG | 0.356912 | 4_4:+62415991 | Msa0693490:exon |
| GCTAGGCAATTAGTCGTATC+TGG | 0.362744 | 4_4:-62417326 | None:intergenic |
| TGATGTCAAATTCACTGATA+TGG | 0.369022 | 4_4:+62417616 | Msa0693490:three_prime_UTR |
| GTCTTGACTACATGTCCATC+TGG | 0.383427 | 4_4:-62417296 | None:intergenic |
| CTCGGATAAGCCTTTGCCTT+CGG | 0.389439 | 4_4:-62417468 | None:intergenic |
| ATGCAAACACAAGGTTGTTA+AGG | 0.454129 | 4_4:+62415965 | Msa0693490:five_prime_UTR |
| CAATCTTACATAGTAACTTC+AGG | 0.461633 | 4_4:-62417570 | None:intergenic |
| TCCATGGTGACAAGAACATA+AGG | 0.466228 | 4_4:-62416078 | None:intergenic |
| GTTGTTAAGGTTGGTTTCGA+TGG | 0.484495 | 4_4:+62415978 | Msa0693490:exon |
| CCATACGCAGCTACTCTCTT+CGG | 0.489124 | 4_4:-62417348 | None:intergenic |
| CTAACTAACTTGTTCTTCCA+TGG | 0.492512 | 4_4:-62416094 | None:intergenic |
| AGTAGCTGCGTATGGAGAGA+TGG | 0.493455 | 4_4:+62417356 | Msa0693490:CDS |
| AAGATAACTGCCATCCTGAA+TGG | 0.495110 | 4_4:+62416352 | Msa0693490:CDS |
| TGTTAACACACCAATACATC+TGG | 0.500731 | 4_4:+62416404 | Msa0693490:CDS |
| TTCACTGTGGACGACAAAAT+GGG | 0.505157 | 4_4:+62417212 | Msa0693490:CDS |
| ATATCTCCAATGTGTGAAGA+TGG | 0.506001 | 4_4:+62417259 | Msa0693490:CDS |
| AAACACAAGGTTGTTAAGGT+TGG | 0.510802 | 4_4:+62415969 | Msa0693490:five_prime_UTR |
| TGAGTACTGACCAGATGTAT+TGG | 0.524936 | 4_4:-62416414 | None:intergenic |
| TATCTCCAATGTGTGAAGAT+GGG | 0.525049 | 4_4:+62417260 | Msa0693490:CDS |
| CCGAAGAGAGTAGCTGCGTA+TGG | 0.539890 | 4_4:+62417348 | Msa0693490:CDS |
| GACAAGAACATAAGGGTCGC+TGG | 0.578982 | 4_4:-62416070 | None:intergenic |
| AAGTACTTGTCGAAATTGAG+TGG | 0.580922 | 4_4:+62417429 | Msa0693490:CDS |
| AGATTGAGAAATGTTGACTC+TGG | 0.584076 | 4_4:+62417404 | Msa0693490:CDS |
| CCCTTATGTTCTTGTCACCA+TGG | 0.587591 | 4_4:+62416077 | Msa0693490:CDS |
| CCATGGTGACAAGAACATAA+GGG | 0.590675 | 4_4:-62416077 | None:intergenic |
| CGCAGCTACTCTCTTCGGCT+AGG | 0.597984 | 4_4:-62417343 | None:intergenic |
| CTAATGCATAAAGTTAGAGA+AGG | 0.604755 | 4_4:-62417512 | None:intergenic |
| GTTACAGAATCCGAAGGCAA+AGG | 0.605128 | 4_4:+62417458 | Msa0693490:CDS |
| TCTTGACTACATGTCCATCT+GGG | 0.611492 | 4_4:-62417295 | None:intergenic |
| GGGTTGAGCGATCTCCCAGA+TGG | 0.612527 | 4_4:+62417281 | Msa0693490:CDS |
| GTTCTTCATTCCATTCAGGA+TGG | 0.627122 | 4_4:-62416362 | None:intergenic |
| ATCTCCAATGTGTGAAGATG+GGG | 0.633945 | 4_4:+62417261 | Msa0693490:CDS |
| TCAACCCCATCTTCACACAT+TGG | 0.658196 | 4_4:-62417265 | None:intergenic |
| CGACAAAGACACTTTCACTG+TGG | 0.661032 | 4_4:+62417199 | Msa0693490:CDS |
| GTACTCCTAAAACTCAACCT+CGG | 0.669415 | 4_4:-62417486 | None:intergenic |
| ATTGATGTTACAGAATCCGA+AGG | 0.687927 | 4_4:+62417452 | Msa0693490:CDS |
| CGAAGGCAAAGGCTTATCCG+AGG | 0.695987 | 4_4:+62417469 | Msa0693490:CDS |
| AAGTTGTGCATGCAAACACA+AGG | 0.715116 | 4_4:+62415956 | Msa0693490:five_prime_UTR |
| TCGCTGGTACGAGAATCATG+AGG | 0.744769 | 4_4:-62416054 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAATAAATAAATAAA+AGG | + | chr4_4:62416486-62416505 | Msa0693490:intron | 0.0% |
| !! | TAAATAAATAAATAAATAAA+AGG | + | chr4_4:62416486-62416505 | Msa0693490:intron | 0.0% |
| !! | TAAATAAATAAAAGGAAAAA+TGG | + | chr4_4:62416498-62416517 | Msa0693490:intron | 10.0% |
| !! | AAATAAATAAAAGGAAAAAT+GGG | + | chr4_4:62416499-62416518 | Msa0693490:intron | 10.0% |
| !!! | GAAATTTTGTTTATTATTAA+AGG | + | chr4_4:62417642-62417661 | Msa0693490:three_prime_UTR | 10.0% |
| !! | TAAATAAATAAAAGGAAAAA+TGG | + | chr4_4:62416498-62416517 | Msa0693490:intron | 10.0% |
| !! | AAATAAATAAAAGGAAAAAT+GGG | + | chr4_4:62416499-62416518 | Msa0693490:intron | 10.0% |
| !! | TTATGATATGTTACTATAAA+TGG | + | chr4_4:62416302-62416321 | Msa0693490:intron | 15.0% |
| !!! | TTATCTTAGAAATTTTATCT+CGG | - | chr4_4:62416716-62416735 | None:intergenic | 15.0% |
| !!! | ATCTTAGAAATTTTATCTTA+GGG | - | chr4_4:62416745-62416764 | None:intergenic | 15.0% |
| !!! | AATCTTAGAAATTTTATCTT+AGG | - | chr4_4:62416746-62416765 | None:intergenic | 15.0% |
| !! | TTTGAATTTAAATTAACCAT+AGG | + | chr4_4:62416873-62416892 | Msa0693490:intron | 15.0% |
| !! | TCATTATCAAATTAAGATTA+AGG | - | chr4_4:62417599-62417618 | None:intergenic | 15.0% |
| !! | TTATGATATGTTACTATAAA+TGG | + | chr4_4:62416302-62416321 | Msa0693490:intron | 15.0% |
| !!! | TTATCTTAGAAATTTTATCT+CGG | - | chr4_4:62416716-62416735 | None:intergenic | 15.0% |
| !!! | ATCTTAGAAATTTTATCTTA+GGG | - | chr4_4:62416745-62416764 | None:intergenic | 15.0% |
| !!! | AATCTTAGAAATTTTATCTT+AGG | - | chr4_4:62416746-62416765 | None:intergenic | 15.0% |
| !! | TTTGAATTTAAATTAACCAT+AGG | + | chr4_4:62416873-62416892 | Msa0693490:intron | 15.0% |
| !! | TCATTATCAAATTAAGATTA+AGG | - | chr4_4:62417599-62417618 | None:intergenic | 15.0% |
| !!! | ATCAACATAAAATACTGATT+TGG | - | chr4_4:62416165-62416184 | None:intergenic | 20.0% |
| !!! | ACTAAGATCTTTCTTTTTAT+TGG | + | chr4_4:62416245-62416264 | Msa0693490:intron | 20.0% |
| !! | ATAGTAGTCTAATAAATTAG+AGG | - | chr4_4:62416578-62416597 | None:intergenic | 20.0% |
| !!! | TCAATTTGAAACGAAAAAAA+CGG | - | chr4_4:62417120-62417139 | None:intergenic | 20.0% |
| !!! | ATCAACATAAAATACTGATT+TGG | - | chr4_4:62416165-62416184 | None:intergenic | 20.0% |
| !!! | ACTAAGATCTTTCTTTTTAT+TGG | + | chr4_4:62416245-62416264 | Msa0693490:intron | 20.0% |
| !! | ATAGTAGTCTAATAAATTAG+AGG | - | chr4_4:62416578-62416597 | None:intergenic | 20.0% |
| !!! | TCAATTTGAAACGAAAAAAA+CGG | - | chr4_4:62417120-62417139 | None:intergenic | 20.0% |
| ! | TCTAAGAACTGATTGAAATT+TGG | + | chr4_4:62416186-62416205 | Msa0693490:intron | 25.0% |
| ! | TTCTGCAACTTAAAAAAAGT+TGG | - | chr4_4:62416444-62416463 | None:intergenic | 25.0% |
| !!! | AATTTTTTATGCGTTTCCTT+TGG | + | chr4_4:62416619-62416638 | Msa0693490:intron | 25.0% |
| ! | TAAATTAACCATAGGATCAA+AGG | + | chr4_4:62416881-62416900 | Msa0693490:intron | 25.0% |
| ! | AAATTAACCATAGGATCAAA+GGG | + | chr4_4:62416882-62416901 | Msa0693490:intron | 25.0% |
| ! | ATGAGAATCACAAACAAATA+CGG | + | chr4_4:62417025-62417044 | Msa0693490:intron | 25.0% |
| ! | ACCACCAACAATTTAATATT+AGG | - | chr4_4:62417147-62417166 | None:intergenic | 25.0% |
| ! | TCAATCTTAAACTCATTTCT+TGG | - | chr4_4:62417391-62417410 | None:intergenic | 25.0% |
| ! | TCTAAGAACTGATTGAAATT+TGG | + | chr4_4:62416186-62416205 | Msa0693490:intron | 25.0% |
| ! | TTCTGCAACTTAAAAAAAGT+TGG | - | chr4_4:62416444-62416463 | None:intergenic | 25.0% |
| !!! | AATTTTTTATGCGTTTCCTT+TGG | + | chr4_4:62416619-62416638 | Msa0693490:intron | 25.0% |
| ! | TAAATTAACCATAGGATCAA+AGG | + | chr4_4:62416881-62416900 | Msa0693490:intron | 25.0% |
| ! | AAATTAACCATAGGATCAAA+GGG | + | chr4_4:62416882-62416901 | Msa0693490:intron | 25.0% |
| ! | ATGAGAATCACAAACAAATA+CGG | + | chr4_4:62417025-62417044 | Msa0693490:intron | 25.0% |
| ! | ACCACCAACAATTTAATATT+AGG | - | chr4_4:62417147-62417166 | None:intergenic | 25.0% |
| ! | TCAATCTTAAACTCATTTCT+TGG | - | chr4_4:62417391-62417410 | None:intergenic | 25.0% |
| ATCAGACTTCGTATCAAAAA+AGG | + | chr4_4:62416018-62416037 | Msa0693490:CDS | 30.0% | |
| ATCACACAAGTATAAACCAA+AGG | - | chr4_4:62416638-62416657 | None:intergenic | 30.0% | |
| TGGTTTATACTTGTGTGATT+TGG | + | chr4_4:62416639-62416658 | Msa0693490:intron | 30.0% | |
| CTCAGTTGAAGATAAGTTTA+AGG | - | chr4_4:62416777-62416796 | None:intergenic | 30.0% | |
| AAGTAATGTAGCCTAACAAA+TGG | + | chr4_4:62416973-62416992 | Msa0693490:intron | 30.0% | |
| TGTGATTTAAGCCATTTGTT+AGG | - | chr4_4:62416987-62417006 | None:intergenic | 30.0% | |
| CGAGCCTAATATTAAATTGT+TGG | + | chr4_4:62417140-62417159 | Msa0693490:intron | 30.0% | |
| GCCTAATATTAAATTGTTGG+TGG | + | chr4_4:62417143-62417162 | Msa0693490:intron | 30.0% | |
| CTAATGCATAAAGTTAGAGA+AGG | - | chr4_4:62417515-62417534 | None:intergenic | 30.0% | |
| CAATCTTACATAGTAACTTC+AGG | - | chr4_4:62417573-62417592 | None:intergenic | 30.0% | |
| TGATGTCAAATTCACTGATA+TGG | + | chr4_4:62417616-62417635 | Msa0693490:three_prime_UTR | 30.0% | |
| ATCAGACTTCGTATCAAAAA+AGG | + | chr4_4:62416018-62416037 | Msa0693490:CDS | 30.0% | |
| ATCACACAAGTATAAACCAA+AGG | - | chr4_4:62416638-62416657 | None:intergenic | 30.0% | |
| TGGTTTATACTTGTGTGATT+TGG | + | chr4_4:62416639-62416658 | Msa0693490:intron | 30.0% | |
| CTCAGTTGAAGATAAGTTTA+AGG | - | chr4_4:62416777-62416796 | None:intergenic | 30.0% | |
| AAGTAATGTAGCCTAACAAA+TGG | + | chr4_4:62416973-62416992 | Msa0693490:intron | 30.0% | |
| TGTGATTTAAGCCATTTGTT+AGG | - | chr4_4:62416987-62417006 | None:intergenic | 30.0% | |
| CGAGCCTAATATTAAATTGT+TGG | + | chr4_4:62417140-62417159 | Msa0693490:intron | 30.0% | |
| GCCTAATATTAAATTGTTGG+TGG | + | chr4_4:62417143-62417162 | Msa0693490:intron | 30.0% | |
| CTAATGCATAAAGTTAGAGA+AGG | - | chr4_4:62417515-62417534 | None:intergenic | 30.0% | |
| CAATCTTACATAGTAACTTC+AGG | - | chr4_4:62417573-62417592 | None:intergenic | 30.0% | |
| TGATGTCAAATTCACTGATA+TGG | + | chr4_4:62417616-62417635 | Msa0693490:three_prime_UTR | 30.0% | |
| ATGCAAACACAAGGTTGTTA+AGG | + | chr4_4:62415965-62415984 | Msa0693490:five_prime_UTR | 35.0% | |
| AAACACAAGGTTGTTAAGGT+TGG | + | chr4_4:62415969-62415988 | Msa0693490:five_prime_UTR | 35.0% | |
| !! | CTAACTAACTTGTTCTTCCA+TGG | - | chr4_4:62416097-62416116 | None:intergenic | 35.0% |
| TGTTAACACACCAATACATC+TGG | + | chr4_4:62416404-62416423 | Msa0693490:CDS | 35.0% | |
| !! | CAAGTTTTTGGACAACGATA+TGG | - | chr4_4:62416822-62416841 | None:intergenic | 35.0% |
| CATATCGTTGTCCAAAAACT+TGG | + | chr4_4:62416820-62416839 | Msa0693490:intron | 35.0% | |
| AACTGAGTTCATCACAAACT+TGG | + | chr4_4:62416905-62416924 | Msa0693490:intron | 35.0% | |
| ATCTTCACACATTGGAGATA+TGG | - | chr4_4:62417260-62417279 | None:intergenic | 35.0% | |
| ATATCTCCAATGTGTGAAGA+TGG | + | chr4_4:62417259-62417278 | Msa0693490:CDS | 35.0% | |
| TATCTCCAATGTGTGAAGAT+GGG | + | chr4_4:62417260-62417279 | Msa0693490:CDS | 35.0% | |
| !! | AGATTGAGAAATGTTGACTC+TGG | + | chr4_4:62417404-62417423 | Msa0693490:CDS | 35.0% |
| AAGTACTTGTCGAAATTGAG+TGG | + | chr4_4:62417429-62417448 | Msa0693490:CDS | 35.0% | |
| ATTGATGTTACAGAATCCGA+AGG | + | chr4_4:62417452-62417471 | Msa0693490:CDS | 35.0% | |
| ATGCAAACACAAGGTTGTTA+AGG | + | chr4_4:62415965-62415984 | Msa0693490:five_prime_UTR | 35.0% | |
| AAACACAAGGTTGTTAAGGT+TGG | + | chr4_4:62415969-62415988 | Msa0693490:five_prime_UTR | 35.0% | |
| !! | CTAACTAACTTGTTCTTCCA+TGG | - | chr4_4:62416097-62416116 | None:intergenic | 35.0% |
| TGTTAACACACCAATACATC+TGG | + | chr4_4:62416404-62416423 | Msa0693490:CDS | 35.0% | |
| !! | CAAGTTTTTGGACAACGATA+TGG | - | chr4_4:62416822-62416841 | None:intergenic | 35.0% |
| CATATCGTTGTCCAAAAACT+TGG | + | chr4_4:62416820-62416839 | Msa0693490:intron | 35.0% | |
| AACTGAGTTCATCACAAACT+TGG | + | chr4_4:62416905-62416924 | Msa0693490:intron | 35.0% | |
| ATCTTCACACATTGGAGATA+TGG | - | chr4_4:62417260-62417279 | None:intergenic | 35.0% | |
| ATATCTCCAATGTGTGAAGA+TGG | + | chr4_4:62417259-62417278 | Msa0693490:CDS | 35.0% | |
| TATCTCCAATGTGTGAAGAT+GGG | + | chr4_4:62417260-62417279 | Msa0693490:CDS | 35.0% | |
| !! | AGATTGAGAAATGTTGACTC+TGG | + | chr4_4:62417404-62417423 | Msa0693490:CDS | 35.0% |
| AAGTACTTGTCGAAATTGAG+TGG | + | chr4_4:62417429-62417448 | Msa0693490:CDS | 35.0% | |
| ATTGATGTTACAGAATCCGA+AGG | + | chr4_4:62417452-62417471 | Msa0693490:CDS | 35.0% | |
| AAGTTGTGCATGCAAACACA+AGG | + | chr4_4:62415956-62415975 | Msa0693490:five_prime_UTR | 40.0% | |
| !! | GTTGTTAAGGTTGGTTTCGA+TGG | + | chr4_4:62415978-62415997 | Msa0693490:exon | 40.0% |
| GTTTCGATGGCAAACATTCT+AGG | + | chr4_4:62415991-62416010 | Msa0693490:exon | 40.0% | |
| CCATGGTGACAAGAACATAA+GGG | - | chr4_4:62416080-62416099 | None:intergenic | 40.0% | |
| TCCATGGTGACAAGAACATA+AGG | - | chr4_4:62416081-62416100 | None:intergenic | 40.0% | |
| AAGATAACTGCCATCCTGAA+TGG | + | chr4_4:62416352-62416371 | Msa0693490:CDS | 40.0% | |
| GTTCTTCATTCCATTCAGGA+TGG | - | chr4_4:62416365-62416384 | None:intergenic | 40.0% | |
| GTCAGTTCTTCATTCCATTC+AGG | - | chr4_4:62416369-62416388 | None:intergenic | 40.0% | |
| !! | TGAGTACTGACCAGATGTAT+TGG | - | chr4_4:62416417-62416436 | None:intergenic | 40.0% |
| GTTCATCACAAACTTGGTTG+CGG | + | chr4_4:62416911-62416930 | Msa0693490:intron | 40.0% | |
| TGATGTTGTAGCCTAGATGA+AGG | + | chr4_4:62417083-62417102 | Msa0693490:intron | 40.0% | |
| GATGTTGTAGCCTAGATGAA+GGG | + | chr4_4:62417084-62417103 | Msa0693490:intron | 40.0% | |
| TTTCACTGTGGACGACAAAA+TGG | + | chr4_4:62417211-62417230 | Msa0693490:CDS | 40.0% | |
| TTCACTGTGGACGACAAAAT+GGG | + | chr4_4:62417212-62417231 | Msa0693490:CDS | 40.0% | |
| ATCTCCAATGTGTGAAGATG+GGG | + | chr4_4:62417261-62417280 | Msa0693490:CDS | 40.0% | |
| TCTTGACTACATGTCCATCT+GGG | - | chr4_4:62417298-62417317 | None:intergenic | 40.0% | |
| ! | CTTATCCGAGGTTGAGTTTT+AGG | + | chr4_4:62417481-62417500 | Msa0693490:CDS | 40.0% |
| GTACTCCTAAAACTCAACCT+CGG | - | chr4_4:62417489-62417508 | None:intergenic | 40.0% | |
| AAGTTGTGCATGCAAACACA+AGG | + | chr4_4:62415956-62415975 | Msa0693490:five_prime_UTR | 40.0% | |
| !! | GTTGTTAAGGTTGGTTTCGA+TGG | + | chr4_4:62415978-62415997 | Msa0693490:exon | 40.0% |
| GTTTCGATGGCAAACATTCT+AGG | + | chr4_4:62415991-62416010 | Msa0693490:exon | 40.0% | |
| CCATGGTGACAAGAACATAA+GGG | - | chr4_4:62416080-62416099 | None:intergenic | 40.0% | |
| TCCATGGTGACAAGAACATA+AGG | - | chr4_4:62416081-62416100 | None:intergenic | 40.0% | |
| AAGATAACTGCCATCCTGAA+TGG | + | chr4_4:62416352-62416371 | Msa0693490:CDS | 40.0% | |
| GTTCTTCATTCCATTCAGGA+TGG | - | chr4_4:62416365-62416384 | None:intergenic | 40.0% | |
| GTCAGTTCTTCATTCCATTC+AGG | - | chr4_4:62416369-62416388 | None:intergenic | 40.0% | |
| !! | TGAGTACTGACCAGATGTAT+TGG | - | chr4_4:62416417-62416436 | None:intergenic | 40.0% |
| GTTCATCACAAACTTGGTTG+CGG | + | chr4_4:62416911-62416930 | Msa0693490:intron | 40.0% | |
| TGATGTTGTAGCCTAGATGA+AGG | + | chr4_4:62417083-62417102 | Msa0693490:intron | 40.0% | |
| GATGTTGTAGCCTAGATGAA+GGG | + | chr4_4:62417084-62417103 | Msa0693490:intron | 40.0% | |
| TTTCACTGTGGACGACAAAA+TGG | + | chr4_4:62417211-62417230 | Msa0693490:CDS | 40.0% | |
| TTCACTGTGGACGACAAAAT+GGG | + | chr4_4:62417212-62417231 | Msa0693490:CDS | 40.0% | |
| ATCTCCAATGTGTGAAGATG+GGG | + | chr4_4:62417261-62417280 | Msa0693490:CDS | 40.0% | |
| TCTTGACTACATGTCCATCT+GGG | - | chr4_4:62417298-62417317 | None:intergenic | 40.0% | |
| ! | CTTATCCGAGGTTGAGTTTT+AGG | + | chr4_4:62417481-62417500 | Msa0693490:CDS | 40.0% |
| GTACTCCTAAAACTCAACCT+CGG | - | chr4_4:62417489-62417508 | None:intergenic | 40.0% | |
| CCCTTATGTTCTTGTCACCA+TGG | + | chr4_4:62416077-62416096 | Msa0693490:CDS | 45.0% | |
| ! | GTAGACTCTCGCCAAGTTTT+TGG | - | chr4_4:62416834-62416853 | None:intergenic | 45.0% |
| CTCAGTTCCCTTTGATCCTA+TGG | - | chr4_4:62416892-62416911 | None:intergenic | 45.0% | |
| CGACAAAGACACTTTCACTG+TGG | + | chr4_4:62417199-62417218 | Msa0693490:CDS | 45.0% | |
| TCAACCCCATCTTCACACAT+TGG | - | chr4_4:62417268-62417287 | None:intergenic | 45.0% | |
| GTCTTGACTACATGTCCATC+TGG | - | chr4_4:62417299-62417318 | None:intergenic | 45.0% | |
| GCTAGGCAATTAGTCGTATC+TGG | - | chr4_4:62417329-62417348 | None:intergenic | 45.0% | |
| GTTACAGAATCCGAAGGCAA+AGG | + | chr4_4:62417458-62417477 | Msa0693490:CDS | 45.0% | |
| CCCTTATGTTCTTGTCACCA+TGG | + | chr4_4:62416077-62416096 | Msa0693490:CDS | 45.0% | |
| ! | GTAGACTCTCGCCAAGTTTT+TGG | - | chr4_4:62416834-62416853 | None:intergenic | 45.0% |
| CTCAGTTCCCTTTGATCCTA+TGG | - | chr4_4:62416892-62416911 | None:intergenic | 45.0% | |
| CGACAAAGACACTTTCACTG+TGG | + | chr4_4:62417199-62417218 | Msa0693490:CDS | 45.0% | |
| TCAACCCCATCTTCACACAT+TGG | - | chr4_4:62417268-62417287 | None:intergenic | 45.0% | |
| GTCTTGACTACATGTCCATC+TGG | - | chr4_4:62417299-62417318 | None:intergenic | 45.0% | |
| GCTAGGCAATTAGTCGTATC+TGG | - | chr4_4:62417329-62417348 | None:intergenic | 45.0% | |
| GTTACAGAATCCGAAGGCAA+AGG | + | chr4_4:62417458-62417477 | Msa0693490:CDS | 45.0% | |
| TCGCTGGTACGAGAATCATG+AGG | - | chr4_4:62416057-62416076 | None:intergenic | 50.0% | |
| GACAAGAACATAAGGGTCGC+TGG | - | chr4_4:62416073-62416092 | None:intergenic | 50.0% | |
| TCTGTGTGCACCCTTCATCT+AGG | - | chr4_4:62417097-62417116 | None:intergenic | 50.0% | |
| CCATACGCAGCTACTCTCTT+CGG | - | chr4_4:62417351-62417370 | None:intergenic | 50.0% | |
| AGTAGCTGCGTATGGAGAGA+TGG | + | chr4_4:62417356-62417375 | Msa0693490:CDS | 50.0% | |
| CTCGGATAAGCCTTTGCCTT+CGG | - | chr4_4:62417471-62417490 | None:intergenic | 50.0% | |
| TCGCTGGTACGAGAATCATG+AGG | - | chr4_4:62416057-62416076 | None:intergenic | 50.0% | |
| GACAAGAACATAAGGGTCGC+TGG | - | chr4_4:62416073-62416092 | None:intergenic | 50.0% | |
| TCTGTGTGCACCCTTCATCT+AGG | - | chr4_4:62417097-62417116 | None:intergenic | 50.0% | |
| CCATACGCAGCTACTCTCTT+CGG | - | chr4_4:62417351-62417370 | None:intergenic | 50.0% | |
| AGTAGCTGCGTATGGAGAGA+TGG | + | chr4_4:62417356-62417375 | Msa0693490:CDS | 50.0% | |
| CTCGGATAAGCCTTTGCCTT+CGG | - | chr4_4:62417471-62417490 | None:intergenic | 50.0% | |
| CCGAAGAGAGTAGCTGCGTA+TGG | + | chr4_4:62417348-62417367 | Msa0693490:CDS | 55.0% | |
| CGAAGGCAAAGGCTTATCCG+AGG | + | chr4_4:62417469-62417488 | Msa0693490:CDS | 55.0% | |
| CCGAAGAGAGTAGCTGCGTA+TGG | + | chr4_4:62417348-62417367 | Msa0693490:CDS | 55.0% | |
| CGAAGGCAAAGGCTTATCCG+AGG | + | chr4_4:62417469-62417488 | Msa0693490:CDS | 55.0% | |
| GGGTTGAGCGATCTCCCAGA+TGG | + | chr4_4:62417281-62417300 | Msa0693490:CDS | 60.0% | |
| CGCAGCTACTCTCTTCGGCT+AGG | - | chr4_4:62417346-62417365 | None:intergenic | 60.0% | |
| GGGTTGAGCGATCTCCCAGA+TGG | + | chr4_4:62417281-62417300 | Msa0693490:CDS | 60.0% | |
| CGCAGCTACTCTCTTCGGCT+AGG | - | chr4_4:62417346-62417365 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 62415917 | 62417663 | 62415917 | ID=Msa0693490;Name=Msa0693490 |
| chr4_4 | mRNA | 62415917 | 62417663 | 62415917 | ID=Msa0693490-mRNA-1;Parent=Msa0693490;Name=Msa0693490-mRNA-1;_AED=0.05;_eAED=0.05;_QI=80|1|1|1|1|1|3|161|172 |
| chr4_4 | exon | 62415917 | 62416107 | 62415917 | ID=Msa0693490-mRNA-1:exon:17464;Parent=Msa0693490-mRNA-1 |
| chr4_4 | exon | 62416330 | 62416425 | 62416330 | ID=Msa0693490-mRNA-1:exon:17465;Parent=Msa0693490-mRNA-1 |
| chr4_4 | exon | 62417191 | 62417663 | 62417191 | ID=Msa0693490-mRNA-1:exon:17466;Parent=Msa0693490-mRNA-1 |
| chr4_4 | five_prime_UTR | 62415917 | 62415996 | 62415917 | ID=Msa0693490-mRNA-1:five_prime_utr;Parent=Msa0693490-mRNA-1 |
| chr4_4 | CDS | 62415997 | 62416107 | 62415997 | ID=Msa0693490-mRNA-1:cds;Parent=Msa0693490-mRNA-1 |
| chr4_4 | CDS | 62416330 | 62416425 | 62416330 | ID=Msa0693490-mRNA-1:cds;Parent=Msa0693490-mRNA-1 |
| chr4_4 | CDS | 62417191 | 62417502 | 62417191 | ID=Msa0693490-mRNA-1:cds;Parent=Msa0693490-mRNA-1 |
| chr4_4 | three_prime_UTR | 62417503 | 62417663 | 62417503 | ID=Msa0693490-mRNA-1:three_prime_utr;Parent=Msa0693490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
