AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1282210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1282210 MtrunA17_Chr8g0353131 93.750 192 12 0 1 192 1 192 1.16e-133 372
Msa1282210 MtrunA17_Chr3g0084221 77.005 187 43 0 6 192 5 191 8.52e-108 306
Msa1282210 MtrunA17_Chr3g0084161 72.340 188 52 0 5 192 4 191 3.00e-104 297
Msa1282210 MtrunA17_Chr3g0084201 72.872 188 50 1 5 192 4 190 3.33e-100 287
Msa1282210 MtrunA17_Chr3g0084191 62.632 190 68 1 4 190 3 192 2.28e-83 255
Msa1282210 MtrunA17_Chr3g0082411 60.317 63 20 1 51 108 1 63 4.88e-20 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1282210 AT3G27890.1 74.866 187 47 0 5 191 10 196 1.42e-101 291

Find 46 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATATCAGTATGTGATTT+TGG 0.161087 8_3:+22430692 Msa1282210:three_prime_UTR
ATCAAAGTGGCAGCTCTTTC+TGG 0.181158 8_3:+22428266 Msa1282210:CDS
TAGTGCATTAGAATAATTTA+AGG 0.190097 8_3:-22430660 None:intergenic
GATCGATATAAATTCCAATT+TGG 0.263770 8_3:-22430475 None:intergenic
CTTTGCAGGCATTTACTCTA+AGG 0.267903 8_3:+22430618 Msa1282210:CDS
CATCTAGACCACCAAATGTT+TGG 0.329711 8_3:+22430381 Msa1282210:CDS
CACTATCATCTACGCCAAAT+TGG 0.340851 8_3:+22430461 Msa1282210:CDS
GAGTATAACTACTCTGTTAC+AGG 0.350492 8_3:+22428596 Msa1282210:CDS
CATTGAAGAATGCAATTGAT+TGG 0.367565 8_3:+22430357 Msa1282210:CDS
ATCTAGACCACCAAATGTTT+GGG 0.385196 8_3:+22430382 Msa1282210:CDS
CCATCATCATTGAACTTTGT+AGG 0.388533 8_3:-22430545 None:intergenic
GCTTTGCCAGCCCAAACATT+TGG 0.411118 8_3:-22430392 None:intergenic
CAATCAATTGCATTCTTCAA+TGG 0.420729 8_3:-22430356 None:intergenic
AGAAAAGCTTCATACCATTC+AGG 0.420835 8_3:+22428296 Msa1282210:CDS
GCATTTACTCTAAGGCTTCA+AGG 0.430875 8_3:+22430626 Msa1282210:CDS
GAACATAATCTCCTAAGTTA+TGG 0.452462 8_3:+22428232 Msa1282210:exon
ATTGAAGAATGCAATTGATT+GGG 0.453647 8_3:+22430358 Msa1282210:CDS
TTGCCAGCCCAAACATTTGG+TGG 0.456284 8_3:-22430389 None:intergenic
ATAAGCACTGGAGGAGACTT+TGG 0.462138 8_3:+22430425 Msa1282210:CDS
AAGACGAACCAGCACGGATA+AGG 0.470569 8_3:-22428319 None:intergenic
CATTCAGGCCTTATCCGTGC+TGG 0.509003 8_3:+22428311 Msa1282210:CDS
CCTACAAAGTTCAATGATGA+TGG 0.512972 8_3:+22430545 Msa1282210:CDS
CACTGCTTCTGCCATAACTT+AGG 0.529522 8_3:-22428243 None:intergenic
GCAGCTGCAATCATAAGCAC+TGG 0.542454 8_3:+22430413 Msa1282210:CDS
TTTGATTGATGAAGGGGCTA+AGG 0.544643 8_3:+22430571 Msa1282210:CDS
GCAGCAATTGAGTTGAGTAA+AGG 0.545033 8_3:+22428422 Msa1282210:intron
TTGAGTAAAGGAGCAATTGA+AGG 0.546127 8_3:+22428434 Msa1282210:CDS
CAGCACGGATAAGGCCTGAA+TGG 0.546637 8_3:-22428310 None:intergenic
AGACCACCAAATGTTTGGGC+TGG 0.554510 8_3:+22430386 Msa1282210:CDS
GATGGCGATTTGATTGATGA+AGG 0.564435 8_3:+22430563 Msa1282210:CDS
AACACTGATCTTGAGAGCAA+TGG 0.575389 8_3:+22428500 Msa1282210:CDS
CGAAAAGCTTCAACAAGAGG+TGG 0.582016 8_3:-22428530 None:intergenic
TGGCGAAAAGCTTCAACAAG+AGG 0.594853 8_3:-22428533 None:intergenic
TCAAGATCAGTGTTATACAT+TGG 0.601336 8_3:-22428491 None:intergenic
ACTGGAGGAGACTTTGGTGG+TGG 0.607452 8_3:+22430431 Msa1282210:CDS
ATGGCGATTTGATTGATGAA+GGG 0.608092 8_3:+22430564 Msa1282210:CDS
TATTATTCAAAATCTATGTG+AGG 0.618332 8_3:-22430750 None:intergenic
AGCACTGGAGGAGACTTTGG+TGG 0.619886 8_3:+22430428 Msa1282210:CDS
CAAAAGAAGACGAACCAGCA+CGG 0.622016 8_3:-22428325 None:intergenic
GTAACAGAGTAGTTATACTC+AGG 0.625136 8_3:-22428593 None:intergenic
AATGCTCTTAGAAAGAACTC+AGG 0.630349 8_3:-22430515 None:intergenic
TCATCATTGAACTTTGTAGG+TGG 0.633858 8_3:-22430542 None:intergenic
TGGCGATTTGATTGATGAAG+GGG 0.641939 8_3:+22430565 Msa1282210:CDS
GCTGCAATCATAAGCACTGG+AGG 0.650272 8_3:+22430416 Msa1282210:CDS
TATCAGCTTGAAGAATCTTG+TGG 0.652286 8_3:-22428553 None:intergenic
GGCAGAAGCAGTGATCAAAG+TGG 0.707321 8_3:+22428253 Msa1282210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATATTTTAGTTGAAAA+TGG + chr8_3:22429352-22429371 Msa1282210:intron 10.0%
!!! ATTATATTTTAGTTGAAAAT+GGG + chr8_3:22429353-22429372 Msa1282210:intron 10.0%
!!! ATATAGAAATATTTGGATTT+TGG + chr8_3:22429018-22429037 Msa1282210:intron 15.0%
!!! TATAGAAATATTTGGATTTT+GGG + chr8_3:22429019-22429038 Msa1282210:intron 15.0%
!!! AACAACCAATTTTTTTTTAT+AGG - chr8_3:22429186-22429205 None:intergenic 15.0%
!! AAATTTATTATCGAAGAAAT+TGG + chr8_3:22429223-22429242 Msa1282210:intron 15.0%
!! AACTAAAATATAATTTCCTT+TGG - chr8_3:22429347-22429366 None:intergenic 15.0%
!!! TTATATTTTAGTTGAAAATG+GGG + chr8_3:22429354-22429373 Msa1282210:intron 15.0%
!!! TACGATATTTTATTTTGTTT+TGG + chr8_3:22429423-22429442 Msa1282210:intron 15.0%
!! TTGTCTAAAAAACATTTATT+TGG + chr8_3:22429478-22429497 Msa1282210:intron 15.0%
!! AATCCAAAAAATTACAATTA+TGG - chr8_3:22429923-22429942 None:intergenic 15.0%
!! TTTGTAATTAAAAAATTGTG+AGG - chr8_3:22430257-22430276 None:intergenic 15.0%
!! TGACTATATAGATAATACTA+CGG + chr8_3:22428758-22428777 Msa1282210:intron 20.0%
!!! TCATTGACATTTTTAGAATT+AGG + chr8_3:22428844-22428863 Msa1282210:intron 20.0%
!!! ATAGAAATATTTGGATTTTG+GGG + chr8_3:22429020-22429039 Msa1282210:intron 20.0%
!!! TATAGTAAAATTCTCTGAAA+AGG + chr8_3:22429047-22429066 Msa1282210:intron 20.0%
!!! CTGAAATTTGTTAATGTTTT+TGG + chr8_3:22429099-22429118 Msa1282210:intron 20.0%
!!! ACCAATTTTTTTTTATAGGA+GGG - chr8_3:22429182-22429201 None:intergenic 20.0%
!!! AACCAATTTTTTTTTATAGG+AGG - chr8_3:22429183-22429202 None:intergenic 20.0%
!!! GAAATTGGTGAAATTTTTTT+TGG + chr8_3:22429238-22429257 Msa1282210:intron 20.0%
!! TATTTAGTATCCAAGAAATT+GGG + chr8_3:22429309-22429328 Msa1282210:intron 20.0%
!!! GACAATTGTTTCTTATAATA+AGG - chr8_3:22429591-22429610 None:intergenic 20.0%
!! GTCAAATGTTTCTTATAATA+AGG + chr8_3:22429690-22429709 Msa1282210:intron 20.0%
!! TTAGGCATAATATGAAAAAA+GGG - chr8_3:22429736-22429755 None:intergenic 20.0%
!! GTAAACTTAAACTCATATAA+AGG + chr8_3:22430183-22430202 Msa1282210:intron 20.0%
!! TAGTGCATTAGAATAATTTA+AGG - chr8_3:22430663-22430682 None:intergenic 20.0%
!! TATTATTCAAAATCTATGTG+AGG - chr8_3:22430753-22430772 None:intergenic 20.0%
! ATCTATATAGTCACATATGT+AGG - chr8_3:22428751-22428770 None:intergenic 25.0%
!!! CCCACCTTAAAAATTTTTTT+GGG - chr8_3:22428992-22429011 None:intergenic 25.0%
!!! CCCAAAAAAATTTTTAAGGT+GGG + chr8_3:22428989-22429008 Msa1282210:intron 25.0%
!!! CCAAAAAAATTTTTAAGGTG+GGG + chr8_3:22428990-22429009 Msa1282210:intron 25.0%
!!! CAAAAAAATTTTTAAGGTGG+GGG + chr8_3:22428991-22429010 Msa1282210:intron 25.0%
!!! AAAAAAATTTTTAAGGTGGG+GGG + chr8_3:22428992-22429011 Msa1282210:intron 25.0%
!! TAGAAATATTTGGATTTTGG+GGG + chr8_3:22429021-22429040 Msa1282210:intron 25.0%
! TATAGCAAATCTCACTAAAA+GGG - chr8_3:22429125-22429144 None:intergenic 25.0%
! ATATAGCAAATCTCACTAAA+AGG - chr8_3:22429126-22429145 None:intergenic 25.0%
! TAAAAAAATTTGTGCTGCAT+GGG - chr8_3:22429153-22429172 None:intergenic 25.0%
! ATAAAAAAATTTGTGCTGCA+TGG - chr8_3:22429154-22429173 None:intergenic 25.0%
! ACCCTCCTATAAAAAAAAAT+TGG + chr8_3:22429178-22429197 Msa1282210:intron 25.0%
! TATTAGTGAAGCACATTATT+AGG - chr8_3:22429273-22429292 None:intergenic 25.0%
! CTATTTAGTATCCAAGAAAT+TGG + chr8_3:22429308-22429327 Msa1282210:intron 25.0%
! TGAAAATTATCCCAATTTCT+TGG - chr8_3:22429322-22429341 None:intergenic 25.0%
!! TTGTTTCTTATAATAAGGAC+CGG - chr8_3:22429586-22429605 None:intergenic 25.0%
! ATGTTTCTTATAATAAGGAC+CGG + chr8_3:22429695-22429714 Msa1282210:intron 25.0%
! CTTAGGCATAATATGAAAAA+AGG - chr8_3:22429737-22429756 None:intergenic 25.0%
!!! CTTTTTTCATATTATGCCTA+AGG + chr8_3:22429735-22429754 Msa1282210:intron 25.0%
!!! AGGCCATAATTGTAATTTTT+TGG + chr8_3:22429917-22429936 Msa1282210:intron 25.0%
! TAAACAAGTTGTAAAGCTAT+CGG - chr8_3:22429987-22430006 None:intergenic 25.0%
! AAAAAATTGTGAGGTAGAAA+TGG - chr8_3:22430248-22430267 None:intergenic 25.0%
! ATTGAAGAATGCAATTGATT+GGG + chr8_3:22430358-22430377 Msa1282210:CDS 25.0%
! GATCGATATAAATTCCAATT+TGG - chr8_3:22430478-22430497 None:intergenic 25.0%
!! CAAATATCAGTATGTGATTT+TGG + chr8_3:22430692-22430711 Msa1282210:three_prime_UTR 25.0%
!! GAGGAAATAATACATTTTCA+AGG - chr8_3:22430734-22430753 None:intergenic 25.0%
GAACATAATCTCCTAAGTTA+TGG + chr8_3:22428232-22428251 Msa1282210:exon 30.0%
!!! GTTGTAGTTTTGAATTTGCA+TGG + chr8_3:22428387-22428406 Msa1282210:intron 30.0%
TCAAGATCAGTGTTATACAT+TGG - chr8_3:22428494-22428513 None:intergenic 30.0%
!! CTTGTTATCTTGCTATTCAA+GGG - chr8_3:22428801-22428820 None:intergenic 30.0%
!! TCTTGTTATCTTGCTATTCA+AGG - chr8_3:22428802-22428821 None:intergenic 30.0%
CATACAAATGGTGATTTGAT+TGG + chr8_3:22428880-22428899 Msa1282210:intron 30.0%
!! GCCCAAAAAAATTTTTAAGG+TGG + chr8_3:22428988-22429007 Msa1282210:intron 30.0%
!!! CCCCACCTTAAAAATTTTTT+TGG - chr8_3:22428993-22429012 None:intergenic 30.0%
GGGGTGTATATAGAAATATT+TGG + chr8_3:22429011-22429030 Msa1282210:intron 30.0%
CTTGTATCATGTCAAAGTTT+GGG - chr8_3:22429073-22429092 None:intergenic 30.0%
TCTTGTATCATGTCAAAGTT+TGG - chr8_3:22429074-22429093 None:intergenic 30.0%
ACTTTGACATGATACAAGAA+TGG + chr8_3:22429075-22429094 Msa1282210:intron 30.0%
CTTTGACATGATACAAGAAT+GGG + chr8_3:22429076-22429095 Msa1282210:intron 30.0%
AGCACATTATTAGGAACAAA+GGG - chr8_3:22429264-22429283 None:intergenic 30.0%
AAGCACATTATTAGGAACAA+AGG - chr8_3:22429265-22429284 None:intergenic 30.0%
! TGGGATAATTTTCATACCAA+AGG + chr8_3:22429328-22429347 Msa1282210:intron 30.0%
GATATTTGAGTAGTTGCAAT+TGG + chr8_3:22429876-22429895 Msa1282210:intron 30.0%
! TGACAGTCTCAACATTTTAA+TGG + chr8_3:22429953-22429972 Msa1282210:intron 30.0%
AAACAAGTTGTAAAGCTATC+GGG - chr8_3:22429986-22430005 None:intergenic 30.0%
!! CACTTAGTTTGTGTTTGATA+GGG - chr8_3:22430223-22430242 None:intergenic 30.0%
!! ACACTTAGTTTGTGTTTGAT+AGG - chr8_3:22430224-22430243 None:intergenic 30.0%
ACACAAAACAAAGGTGAAAA+TGG - chr8_3:22430330-22430349 None:intergenic 30.0%
CAATCAATTGCATTCTTCAA+TGG - chr8_3:22430359-22430378 None:intergenic 30.0%
CATTGAAGAATGCAATTGAT+TGG + chr8_3:22430357-22430376 Msa1282210:CDS 30.0%
! ACAAGTTCTTTTATCTTTGC+AGG + chr8_3:22430604-22430623 Msa1282210:CDS 30.0%
! ATGGTATGAAGCTTTTCTGA+AGG - chr8_3:22428294-22428313 None:intergenic 35.0%
AGAAAAGCTTCATACCATTC+AGG + chr8_3:22428296-22428315 Msa1282210:CDS 35.0%
TTGAGTAAAGGAGCAATTGA+AGG + chr8_3:22428434-22428453 Msa1282210:CDS 35.0%
TATCAGCTTGAAGAATCTTG+TGG - chr8_3:22428556-22428575 None:intergenic 35.0%
GTAACAGAGTAGTTATACTC+AGG - chr8_3:22428596-22428615 None:intergenic 35.0%
GAGTATAACTACTCTGTTAC+AGG + chr8_3:22428596-22428615 Msa1282210:CDS 35.0%
GAGACTTTGTTCACACAATT+CGG + chr8_3:22428716-22428735 Msa1282210:intron 35.0%
! GGGGCCCAAAAAAATTTTTA+AGG + chr8_3:22428985-22429004 Msa1282210:intron 35.0%
AAATTATGATGTACTCCCTC+CGG + chr8_3:22429564-22429583 Msa1282210:intron 35.0%
TTCTTATAATAAGGACCGGA+GGG - chr8_3:22429699-22429718 None:intergenic 35.0%
TTTCTTATAATAAGGACCGG+AGG - chr8_3:22429698-22429717 None:intergenic 35.0%
!! TTGCAGCTTTGAAATGATCA+CGG - chr8_3:22430049-22430068 None:intergenic 35.0%
GTCAAAGTGAAGGAACATAA+CGG + chr8_3:22430072-22430091 Msa1282210:intron 35.0%
!! TATGCAACCGTTTTTGCAAT+GGG - chr8_3:22430106-22430125 None:intergenic 35.0%
!! ATATGCAACCGTTTTTGCAA+TGG - chr8_3:22430107-22430126 None:intergenic 35.0%
ATTGCAAAAACGGTTGCATA+TGG + chr8_3:22430106-22430125 Msa1282210:intron 35.0%
!! TTAGTTTGTGTTTGATAGGG+AGG - chr8_3:22430220-22430239 None:intergenic 35.0%
TGGAGCTAAACACAAAACAA+AGG - chr8_3:22430339-22430358 None:intergenic 35.0%
ATCTAGACCACCAAATGTTT+GGG + chr8_3:22430382-22430401 Msa1282210:CDS 35.0%
AATGCTCTTAGAAAGAACTC+AGG - chr8_3:22430518-22430537 None:intergenic 35.0%
TCATCATTGAACTTTGTAGG+TGG - chr8_3:22430545-22430564 None:intergenic 35.0%
CCATCATCATTGAACTTTGT+AGG - chr8_3:22430548-22430567 None:intergenic 35.0%
CCTACAAAGTTCAATGATGA+TGG + chr8_3:22430545-22430564 Msa1282210:CDS 35.0%
ATGGCGATTTGATTGATGAA+GGG + chr8_3:22430564-22430583 Msa1282210:CDS 35.0%
!! GCAGCAATTGAGTTGAGTAA+AGG + chr8_3:22428422-22428441 Msa1282210:intron 40.0%
AACACTGATCTTGAGAGCAA+TGG + chr8_3:22428500-22428519 Msa1282210:CDS 40.0%
GTCACATATGTAGGCATCAT+TGG - chr8_3:22428742-22428761 None:intergenic 40.0%
CCATTTGTATGAGCTGCAAT+TGG - chr8_3:22428871-22428890 None:intergenic 40.0%
CCAATTGCAGCTCATACAAA+TGG + chr8_3:22428868-22428887 Msa1282210:intron 40.0%
! AAGGACCGGAGTATTATGTA+AGG + chr8_3:22429709-22429728 Msa1282210:intron 40.0%
! AGGACCGGAGTATTATGTAA+GGG + chr8_3:22429710-22429729 Msa1282210:intron 40.0%
GCAATTGGATGACTCTAGTT+TGG + chr8_3:22429891-22429910 Msa1282210:intron 40.0%
AGTTGTAAAGCTATCGGGTA+GGG - chr8_3:22429981-22430000 None:intergenic 40.0%
AAGTTGTAAAGCTATCGGGT+AGG - chr8_3:22429982-22430001 None:intergenic 40.0%
! TGCGTTACGAACGTTTTTCT+CGG + chr8_3:22430011-22430030 Msa1282210:intron 40.0%
GCTGCAAATTGTCAAAGTGA+AGG + chr8_3:22430062-22430081 Msa1282210:intron 40.0%
AAAGTGAAGGAACATAACGG+TGG + chr8_3:22430075-22430094 Msa1282210:intron 40.0%
GGACAATCCCATTGCAAAAA+CGG + chr8_3:22430096-22430115 Msa1282210:intron 40.0%
CATCTAGACCACCAAATGTT+TGG + chr8_3:22430381-22430400 Msa1282210:CDS 40.0%
CACTATCATCTACGCCAAAT+TGG + chr8_3:22430461-22430480 Msa1282210:CDS 40.0%
GATGGCGATTTGATTGATGA+AGG + chr8_3:22430563-22430582 Msa1282210:CDS 40.0%
TGGCGATTTGATTGATGAAG+GGG + chr8_3:22430565-22430584 Msa1282210:CDS 40.0%
TTTGATTGATGAAGGGGCTA+AGG + chr8_3:22430571-22430590 Msa1282210:CDS 40.0%
CTTTGCAGGCATTTACTCTA+AGG + chr8_3:22430618-22430637 Msa1282210:CDS 40.0%
!! GCATTTACTCTAAGGCTTCA+AGG + chr8_3:22430626-22430645 Msa1282210:CDS 40.0%
CACTGCTTCTGCCATAACTT+AGG - chr8_3:22428246-22428265 None:intergenic 45.0%
ATCAAAGTGGCAGCTCTTTC+TGG + chr8_3:22428266-22428285 Msa1282210:CDS 45.0%
CAAAAGAAGACGAACCAGCA+CGG - chr8_3:22428328-22428347 None:intergenic 45.0%
CGAAAAGCTTCAACAAGAGG+TGG - chr8_3:22428533-22428552 None:intergenic 45.0%
TGGCGAAAAGCTTCAACAAG+AGG - chr8_3:22428536-22428555 None:intergenic 45.0%
!!! AATTTTTTTGGGCCCCCTAC+TGG - chr8_3:22428981-22429000 None:intergenic 45.0%
AGGGCCCTTACATAATACTC+CGG - chr8_3:22429717-22429736 None:intergenic 45.0%
!! TCTAGAGTTTTACGGGCCTT+AGG - chr8_3:22429754-22429773 None:intergenic 45.0%
! GGCCCGTAAAACTCTAGAAA+CGG + chr8_3:22429756-22429775 Msa1282210:intron 45.0%
!!! GGCCGTTTCTAGAGTTTTAC+GGG - chr8_3:22429761-22429780 None:intergenic 45.0%
!!! GGGCCGTTTCTAGAGTTTTA+CGG - chr8_3:22429762-22429781 None:intergenic 45.0%
ACGGGGAATTTAGAGGATTC+GGG - chr8_3:22429811-22429830 None:intergenic 45.0%
CACGGGGAATTTAGAGGATT+CGG - chr8_3:22429812-22429831 None:intergenic 45.0%
! GGATGACTCTAGTTTGGTCT+AGG + chr8_3:22429897-22429916 Msa1282210:intron 45.0%
! GCGTTACGAACGTTTTTCTC+GGG + chr8_3:22430012-22430031 Msa1282210:intron 45.0%
GAAATGATCACGGTGTCCTT+GGG - chr8_3:22430039-22430058 None:intergenic 45.0%
TGAAATGATCACGGTGTCCT+TGG - chr8_3:22430040-22430059 None:intergenic 45.0%
AAACGGTTGCATATGGCTGA+CGG + chr8_3:22430113-22430132 Msa1282210:intron 45.0%
!! ATAAGCACTGGAGGAGACTT+TGG + chr8_3:22430425-22430444 Msa1282210:CDS 45.0%
GGCAGAAGCAGTGATCAAAG+TGG + chr8_3:22428253-22428272 Msa1282210:CDS 50.0%
AAGACGAACCAGCACGGATA+AGG - chr8_3:22428322-22428341 None:intergenic 50.0%
ACGACTTTAACCTCGCGTGA+AGG + chr8_3:22428908-22428927 Msa1282210:intron 50.0%
CGACTTTAACCTCGCGTGAA+GGG + chr8_3:22428909-22428928 Msa1282210:intron 50.0%
CGGGGAATTTAGAGGATTCG+GGG - chr8_3:22429810-22429829 None:intergenic 50.0%
CGAATCCTCTAAATTCCCCG+TGG + chr8_3:22429810-22429829 Msa1282210:intron 50.0%
TCCTCTAAATTCCCCGTGGT+AGG + chr8_3:22429814-22429833 Msa1282210:intron 50.0%
GGGATGTATCAACATGGGGA+GGG - chr8_3:22429843-22429862 None:intergenic 50.0%
AGGGATGTATCAACATGGGG+AGG - chr8_3:22429844-22429863 None:intergenic 50.0%
CCGAGGGATGTATCAACATG+GGG - chr8_3:22429847-22429866 None:intergenic 50.0%
CCCCATGTTGATACATCCCT+CGG + chr8_3:22429844-22429863 Msa1282210:intron 50.0%
GCCGAGGGATGTATCAACAT+GGG - chr8_3:22429848-22429867 None:intergenic 50.0%
TGCCGAGGGATGTATCAACA+TGG - chr8_3:22429849-22429868 None:intergenic 50.0%
TGTTGATACATCCCTCGGCA+CGG + chr8_3:22429849-22429868 Msa1282210:intron 50.0%
AAATATCCCATCCGTGCCGA+GGG - chr8_3:22429863-22429882 None:intergenic 50.0%
! AACGTTTTTCTCGGGTCCCA+AGG + chr8_3:22430020-22430039 Msa1282210:intron 50.0%
AGACCACCAAATGTTTGGGC+TGG + chr8_3:22430386-22430405 Msa1282210:CDS 50.0%
TTGCCAGCCCAAACATTTGG+TGG - chr8_3:22430392-22430411 None:intergenic 50.0%
GCTTTGCCAGCCCAAACATT+TGG - chr8_3:22430395-22430414 None:intergenic 50.0%
GCAGCTGCAATCATAAGCAC+TGG + chr8_3:22430413-22430432 Msa1282210:CDS 50.0%
!! GCTGCAATCATAAGCACTGG+AGG + chr8_3:22430416-22430435 Msa1282210:CDS 50.0%
CAGCACGGATAAGGCCTGAA+TGG - chr8_3:22428313-22428332 None:intergenic 55.0%
! CATTCAGGCCTTATCCGTGC+TGG + chr8_3:22428311-22428330 Msa1282210:CDS 55.0%
TTTAACCTCGCGTGAAGGGC+TGG + chr8_3:22428913-22428932 Msa1282210:intron 55.0%
GCCTACCACGGGGAATTTAG+AGG - chr8_3:22429818-22429837 None:intergenic 55.0%
ATACATCCCTCGGCACGGAT+GGG + chr8_3:22429854-22429873 Msa1282210:intron 55.0%
CAAATATCCCATCCGTGCCG+AGG - chr8_3:22429864-22429883 None:intergenic 55.0%
! AGCACTGGAGGAGACTTTGG+TGG + chr8_3:22430428-22430447 Msa1282210:CDS 55.0%
ACTGGAGGAGACTTTGGTGG+TGG + chr8_3:22430431-22430450 Msa1282210:CDS 55.0%
CACTCGTGGCCTATGCCCTA+GGG - chr8_3:22428939-22428958 None:intergenic 60.0%
TTTGGGCCCCCTACTGGCAA+GGG - chr8_3:22428975-22428994 None:intergenic 60.0%
! TTTTGGGCCCCCTACTGGCA+AGG - chr8_3:22428976-22428995 None:intergenic 60.0%
CGAACCTTCACACGCGAGCA+GGG - chr8_3:22429782-22429801 None:intergenic 60.0%
TCGAACCTTCACACGCGAGC+AGG - chr8_3:22429783-22429802 None:intergenic 60.0%
ATGGGGAGGGTTGCCTACCA+CGG - chr8_3:22429830-22429849 None:intergenic 60.0%
GATACATCCCTCGGCACGGA+TGG + chr8_3:22429853-22429872 Msa1282210:intron 60.0%
!! AAGGGCTGGCCCTAGGGCAT+AGG + chr8_3:22428927-22428946 Msa1282210:intron 65.0%
GCACTCGTGGCCTATGCCCT+AGG - chr8_3:22428940-22428959 None:intergenic 65.0%
GGCATAGGCCACGAGTGCGA+CGG + chr8_3:22428942-22428961 Msa1282210:intron 65.0%
GCCTAGGGCCCTTGCCAGTA+GGG + chr8_3:22428964-22428983 Msa1282210:intron 65.0%
CCTAGGGCCCTTGCCAGTAG+GGG + chr8_3:22428965-22428984 Msa1282210:intron 65.0%
CTAGGGCCCTTGCCAGTAGG+GGG + chr8_3:22428966-22428985 Msa1282210:intron 65.0%
TGGGGAGGGTTGCCTACCAC+GGG - chr8_3:22429829-22429848 None:intergenic 65.0%
TAGGGCCAGCCCTTCACGCG+AGG - chr8_3:22428921-22428940 None:intergenic 70.0%
!! TCGCGTGAAGGGCTGGCCCT+AGG + chr8_3:22428920-22428939 Msa1282210:intron 70.0%
!! CGCGTGAAGGGCTGGCCCTA+GGG + chr8_3:22428921-22428940 Msa1282210:intron 70.0%
GCCACGAGTGCGACGGCCTA+GGG + chr8_3:22428949-22428968 Msa1282210:intron 70.0%
GGCCTAGGGCCCTTGCCAGT+AGG + chr8_3:22428963-22428982 Msa1282210:intron 70.0%
CCCCTACTGGCAAGGGCCCT+AGG - chr8_3:22428968-22428987 None:intergenic 70.0%
ACGGCCCTGCTCGCGTGTGA+AGG + chr8_3:22429775-22429794 Msa1282210:intron 70.0%
GGGGAGGGTTGCCTACCACG+GGG - chr8_3:22429828-22429847 None:intergenic 70.0%
GGCCACGAGTGCGACGGCCT+AGG + chr8_3:22428948-22428967 Msa1282210:intron 75.0%
GCCCTAGGCCGTCGCACTCG+TGG - chr8_3:22428953-22428972 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 22428194 22430785 22428194 ID=Msa1282210;Name=Msa1282210
chr8_3 mRNA 22428194 22430785 22428194 ID=Msa1282210-mRNA-1;Parent=Msa1282210;Name=Msa1282210-mRNA-1;_AED=0.30;_eAED=0.30;_QI=57|1|1|1|1|1|3|127|192
chr8_3 exon 22428194 22428332 22428194 ID=Msa1282210-mRNA-1:exon:8019;Parent=Msa1282210-mRNA-1
chr8_3 exon 22428426 22428617 22428426 ID=Msa1282210-mRNA-1:exon:8020;Parent=Msa1282210-mRNA-1
chr8_3 exon 22430354 22430785 22430354 ID=Msa1282210-mRNA-1:exon:8021;Parent=Msa1282210-mRNA-1
chr8_3 five_prime_UTR 22428194 22428250 22428194 ID=Msa1282210-mRNA-1:five_prime_utr;Parent=Msa1282210-mRNA-1
chr8_3 CDS 22428251 22428332 22428251 ID=Msa1282210-mRNA-1:cds;Parent=Msa1282210-mRNA-1
chr8_3 CDS 22428426 22428617 22428426 ID=Msa1282210-mRNA-1:cds;Parent=Msa1282210-mRNA-1
chr8_3 CDS 22430354 22430658 22430354 ID=Msa1282210-mRNA-1:cds;Parent=Msa1282210-mRNA-1
chr8_3 three_prime_UTR 22430659 22430785 22430659 ID=Msa1282210-mRNA-1:three_prime_utr;Parent=Msa1282210-mRNA-1
Gene Sequence

>Msa1282210

ATGGCAGAAGCAGTGATCAAAGTGGCAGCTCTTTCTGGTTCCTTCAGAAAAGCTTCATACCATTCAGGCCTTATCCGTGCTGCAATTGAGTTGAGTAAAGGAGCAATTGAAGGCATTGAGATTGAGTTCATTGATATTTCAACTCTACCAATGTATAACACTGATCTTGAGAGCAATGGAACTTATCCACCTCTTGTTGAAGCTTTTCGCCACAAGATTCTTCAAGCTGATAGTGTTCTTTTTGCTTCTCCTGAGTATAACTACTCTGTTACAGCTCCATTGAAGAATGCAATTGATTGGGCATCTAGACCACCAAATGTTTGGGCTGGCAAAGCAGCTGCAATCATAAGCACTGGAGGAGACTTTGGTGGTGGAAGATCACACTATCATCTACGCCAAATTGGAATTTATATCGATCTTCATTTCATCAATAAACCTGAGTTCTTTCTAAGAGCATTTGAGCCACCTACAAAGTTCAATGATGATGGCGATTTGATTGATGAAGGGGCTAAGGATAAGTTGAAACAAGTTCTTTTATCTTTGCAGGCATTTACTCTAAGGCTTCAAGGCAAAAACTGA

Protein sequence

>Msa1282210

MAEAVIKVAALSGSFRKASYHSGLIRAAIELSKGAIEGIEIEFIDISTLPMYNTDLESNGTYPPLVEAFRHKILQADSVLFASPEYNYSVTAPLKNAIDWASRPPNVWAGKAAAIISTGGDFGGGRSHYHLRQIGIYIDLHFINKPEFFLRAFEPPTKFNDDGDLIDEGAKDKLKQVLLSLQAFTLRLQGKN*