Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803250 | XP_003612880.1 | 98.885 | 269 | 3 | 0 | 1 | 269 | 1 | 269 | 0.0 | 546 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803250 | sp|Q9FIQ5|TRN2_ARATH | 67.286 | 269 | 88 | 0 | 1 | 269 | 1 | 269 | 2.18e-127 | 365 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803250 | G7KDS1 | 98.885 | 269 | 3 | 0 | 1 | 269 | 1 | 269 | 0.0 | 546 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002580 | Msa0803250 | 0.813066 | 3.089750e-51 | -8.615850e-47 |
| Msa0017670 | Msa0803250 | 0.817437 | 3.300066e-52 | -8.615850e-47 |
| Msa0017930 | Msa0803250 | 0.825480 | 4.582050e-54 | -8.615850e-47 |
| Msa0017950 | Msa0803250 | 0.809160 | 2.170510e-50 | -8.615850e-47 |
| Msa0025160 | Msa0803250 | 0.821346 | 4.238763e-53 | -8.615850e-47 |
| Msa0027280 | Msa0803250 | 0.812437 | 4.241607e-51 | -8.615850e-47 |
| Msa0034210 | Msa0803250 | 0.807002 | 6.251068e-50 | -8.615850e-47 |
| Msa0042640 | Msa0803250 | 0.843337 | 1.490722e-58 | -8.615850e-47 |
| Msa0048510 | Msa0803250 | 0.807618 | 4.628494e-50 | -8.615850e-47 |
| Msa0050660 | Msa0803250 | 0.832156 | 1.109989e-55 | -8.615850e-47 |
| Msa0050700 | Msa0803250 | 0.832232 | 1.063142e-55 | -8.615850e-47 |
| Msa0050790 | Msa0803250 | 0.834280 | 3.283752e-56 | -8.615850e-47 |
| Msa0081980 | Msa0803250 | 0.807004 | 6.247141e-50 | -8.615850e-47 |
| Msa0094780 | Msa0803250 | 0.814239 | 1.704999e-51 | -8.615850e-47 |
| Msa0094790 | Msa0803250 | 0.853469 | 2.340886e-61 | -8.615850e-47 |
| Msa0098040 | Msa0803250 | 0.820800 | 5.665136e-53 | -8.615850e-47 |
| Msa0611210 | Msa0803250 | 0.833887 | 4.118508e-56 | -8.615850e-47 |
| Msa0616210 | Msa0803250 | 0.822956 | 1.794656e-53 | -8.615850e-47 |
| Msa0624420 | Msa0803250 | 0.800484 | 1.410477e-48 | -8.615850e-47 |
| Msa0644410 | Msa0803250 | 0.822722 | 2.034612e-53 | -8.615850e-47 |
| Msa0651550 | Msa0803250 | 0.828047 | 1.116916e-54 | -8.615850e-47 |
| Msa0658640 | Msa0803250 | 0.803048 | 4.198802e-49 | -8.615850e-47 |
| Msa0675330 | Msa0803250 | 0.832346 | 9.960225e-56 | -8.615850e-47 |
| Msa0693890 | Msa0803250 | 0.814310 | 1.644367e-51 | -8.615850e-47 |
| Msa0699490 | Msa0803250 | 0.804798 | 1.817354e-49 | -8.615850e-47 |
| Msa0699540 | Msa0803250 | 0.830507 | 2.825349e-55 | -8.615850e-47 |
| Msa0703600 | Msa0803250 | 0.801206 | 1.004588e-48 | -8.615850e-47 |
| Msa0709200 | Msa0803250 | 0.800617 | 1.324789e-48 | -8.615850e-47 |
| Msa0720410 | Msa0803250 | 0.877712 | 5.043723e-69 | -8.615850e-47 |
| Msa0723090 | Msa0803250 | 0.802200 | 6.281567e-49 | -8.615850e-47 |
| Msa0734250 | Msa0803250 | 0.814892 | 1.221951e-51 | -8.615850e-47 |
| Msa0735780 | Msa0803250 | 0.823889 | 1.086229e-53 | -8.615850e-47 |
| Msa0760970 | Msa0803250 | 0.951755 | 1.044649e-109 | -8.615850e-47 |
| Msa0792370 | Msa0803250 | 0.840104 | 1.063029e-57 | -8.615850e-47 |
| Msa0803250 | Msa0815970 | 0.801697 | 7.966544e-49 | -8.615850e-47 |
| Msa0803250 | Msa0841590 | 0.948976 | 3.227252e-107 | -8.615850e-47 |
| Msa0803250 | Msa1021590 | 0.822011 | 2.975668e-53 | -8.615850e-47 |
| Msa0803250 | Msa1042190 | 0.800601 | 1.335322e-48 | -8.615850e-47 |
| Msa0803250 | Msa1044680 | 0.805814 | 1.113031e-49 | -8.615850e-47 |
| Msa0803250 | Msa1051900 | 0.800924 | 1.146960e-48 | -8.615850e-47 |
| Msa0803250 | Msa1072940 | 0.804143 | 2.488168e-49 | -8.615850e-47 |
| Msa0803250 | Msa1105640 | 0.805526 | 1.279602e-49 | -8.615850e-47 |
| Msa0803250 | Msa1123210 | 0.823508 | 1.333713e-53 | -8.615850e-47 |
| Msa0803250 | Msa1184890 | 0.838098 | 3.519049e-57 | -8.615850e-47 |
| Msa0803250 | Msa1192560 | 0.849078 | 4.071578e-60 | -8.615850e-47 |
| Msa0803250 | Msa1192590 | 0.848574 | 5.619484e-60 | -8.615850e-47 |
| Msa0803250 | Msa1208950 | 0.804738 | 1.870128e-49 | -8.615850e-47 |
| Msa0803250 | Msa1226520 | 0.804441 | 2.157556e-49 | -8.615850e-47 |
| Msa0803250 | Msa1265650 | 0.813218 | 2.861319e-51 | -8.615850e-47 |
| Msa0803250 | Msa1303560 | 0.808450 | 3.078296e-50 | -8.615850e-47 |
| Msa0803250 | Msa1303650 | 0.814516 | 1.480447e-51 | -8.615850e-47 |
| Msa0803250 | Msa1343180 | 0.817209 | 3.712227e-52 | -8.615850e-47 |
| Msa0803250 | Msa1343430 | 0.814901 | 1.216509e-51 | -8.615850e-47 |
| Msa0803250 | Msa1372040 | 0.816650 | 4.957994e-52 | -8.615850e-47 |
| Msa0803250 | Msa1382300 | 0.841135 | 5.707585e-58 | -8.615850e-47 |
| Msa0803250 | Msa1393780 | 0.813516 | 2.460445e-51 | -8.615850e-47 |
| Msa0803250 | Msa1405460 | 0.812483 | 4.144826e-51 | -8.615850e-47 |
| Msa0803250 | Msa1409410 | 0.815144 | 1.074326e-51 | -8.615850e-47 |
| Msa0803250 | Msa1415540 | 0.844137 | 9.105691e-59 | -8.615850e-47 |
| Msa0803250 | Msa1427100 | 0.832800 | 7.687870e-56 | -8.615850e-47 |
| Msa0803250 | Msa1433860 | 0.804634 | 1.966330e-49 | -8.615850e-47 |
| Msa0803250 | Msa1440630 | 0.833567 | 4.952514e-56 | -8.615850e-47 |
| Msa0803250 | Msa1452140 | 0.802252 | 6.126770e-49 | -8.615850e-47 |
| Msa0123070 | Msa0803250 | 0.832433 | 9.480431e-56 | -8.615850e-47 |
| Msa0125360 | Msa0803250 | 0.812956 | 3.265047e-51 | -8.615850e-47 |
| Msa0128310 | Msa0803250 | 0.810921 | 9.063120e-51 | -8.615850e-47 |
| Msa0140130 | Msa0803250 | 0.817057 | 4.017885e-52 | -8.615850e-47 |
| Msa0140280 | Msa0803250 | 0.800639 | 1.311626e-48 | -8.615850e-47 |
| Msa0158860 | Msa0803250 | 0.807357 | 5.257939e-50 | -8.615850e-47 |
| Msa0174440 | Msa0803250 | 0.810739 | 9.923564e-51 | -8.615850e-47 |
| Msa0190570 | Msa0803250 | 0.813408 | 2.598366e-51 | -8.615850e-47 |
| Msa0230800 | Msa0803250 | 0.812504 | 4.100165e-51 | -8.615850e-47 |
| Msa0230840 | Msa0803250 | 0.800119 | 1.673211e-48 | -8.615850e-47 |
| Msa0367690 | Msa0803250 | 0.827192 | 1.792271e-54 | -8.615850e-47 |
| Msa0415450 | Msa0803250 | 0.820662 | 6.094318e-53 | -8.615850e-47 |
| Msa0426530 | Msa0803250 | 0.809673 | 1.684266e-50 | -8.615850e-47 |
| Msa0436910 | Msa0803250 | 0.820200 | 7.776731e-53 | -8.615850e-47 |
| Msa0460070 | Msa0803250 | 0.807134 | 5.863141e-50 | -8.615850e-47 |
| Msa0284800 | Msa0803250 | 0.813908 | 2.017156e-51 | -8.615850e-47 |
| Msa0307670 | Msa0803250 | 0.837736 | 4.358366e-57 | -8.615850e-47 |
| Msa0330520 | Msa0803250 | 0.838353 | 3.024512e-57 | -8.615850e-47 |
| Msa0338340 | Msa0803250 | 0.811224 | 7.789917e-51 | -8.615850e-47 |
| Msa0517250 | Msa0803250 | 0.814034 | 1.891758e-51 | -8.615850e-47 |
| Msa0519750 | Msa0803250 | 0.847976 | 8.224330e-60 | -8.615850e-47 |
| Msa0519820 | Msa0803250 | 0.858304 | 9.033608e-63 | -8.615850e-47 |
| Msa0519830 | Msa0803250 | 0.853976 | 1.673614e-61 | -8.615850e-47 |
| Msa0528570 | Msa0803250 | 0.844297 | 8.251808e-59 | -8.615850e-47 |
| Msa0529030 | Msa0803250 | 0.812769 | 3.589487e-51 | -8.615850e-47 |
| Msa0541300 | Msa0803250 | 0.834105 | 3.633585e-56 | -8.615850e-47 |
| Msa0541310 | Msa0803250 | 0.830185 | 3.386240e-55 | -8.615850e-47 |
| Msa0548470 | Msa0803250 | 0.816391 | 5.666613e-52 | -8.615850e-47 |
| Msa0557460 | Msa0803250 | 0.814674 | 1.366145e-51 | -8.615850e-47 |
| Msa0567170 | Msa0803250 | 0.803827 | 2.894165e-49 | -8.615850e-47 |
| Msa0580810 | Msa0803250 | 0.807166 | 5.771754e-50 | -8.615850e-47 |
| Msa0581470 | Msa0803250 | 0.806570 | 7.714900e-50 | -8.615850e-47 |
| Msa0585020 | Msa0803250 | 0.828295 | 9.732781e-55 | -8.615850e-47 |
| Msa0597270 | Msa0803250 | 0.838075 | 3.566814e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803250 | MtrunA17_Chr5g0411131 | 98.885 | 269 | 3 | 0 | 1 | 269 | 1 | 269 | 0.0 | 546 |
| Msa0803250 | MtrunA17_Chr8g0366571 | 75.093 | 269 | 67 | 0 | 1 | 269 | 1 | 269 | 2.20e-151 | 423 |
| Msa0803250 | MtrunA17_Chr8g0389221 | 50.373 | 268 | 133 | 0 | 1 | 268 | 1 | 268 | 6.46e-100 | 293 |
| Msa0803250 | MtrunA17_Chr4g0030021 | 45.956 | 272 | 141 | 3 | 1 | 266 | 1 | 272 | 1.67e-78 | 239 |
| Msa0803250 | MtrunA17_Chr4g0073251 | 45.318 | 267 | 142 | 3 | 1 | 264 | 1 | 266 | 3.02e-76 | 232 |
| Msa0803250 | MtrunA17_Chr1g0199961 | 41.445 | 263 | 144 | 3 | 4 | 266 | 5 | 257 | 1.64e-66 | 208 |
| Msa0803250 | MtrunA17_Chr6g0462061 | 41.016 | 256 | 141 | 3 | 4 | 259 | 5 | 250 | 1.79e-66 | 208 |
| Msa0803250 | MtrunA17_Chr8g0386471 | 32.171 | 258 | 169 | 3 | 1 | 255 | 3 | 257 | 3.04e-55 | 179 |
| Msa0803250 | MtrunA17_Chr4g0062101 | 34.231 | 260 | 168 | 2 | 3 | 259 | 6 | 265 | 5.47e-54 | 176 |
| Msa0803250 | MtrunA17_Chr5g0447681 | 28.458 | 253 | 155 | 6 | 5 | 252 | 50 | 281 | 1.08e-29 | 114 |
| Msa0803250 | MtrunA17_Chr2g0307641 | 37.662 | 77 | 46 | 1 | 182 | 256 | 3 | 79 | 4.03e-16 | 72.0 |
| Msa0803250 | MtrunA17_Chr2g0307651 | 27.564 | 156 | 112 | 1 | 3 | 158 | 4 | 158 | 3.56e-13 | 66.2 |
| Msa0803250 | MtrunA17_Chr5g0447671 | 29.771 | 131 | 68 | 4 | 118 | 243 | 47 | 158 | 1.31e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803250 | AT5G46700.1 | 67.286 | 269 | 88 | 0 | 1 | 269 | 1 | 269 | 2.21e-128 | 365 |
| Msa0803250 | AT2G19580.1 | 57.249 | 269 | 114 | 1 | 1 | 268 | 1 | 269 | 1.72e-100 | 295 |
| Msa0803250 | AT3G45600.1 | 44.528 | 265 | 141 | 3 | 1 | 259 | 1 | 265 | 1.82e-81 | 247 |
| Msa0803250 | AT4G28050.1 | 42.636 | 258 | 146 | 1 | 4 | 259 | 5 | 262 | 4.43e-78 | 237 |
| Msa0803250 | AT4G30430.1 | 41.603 | 262 | 151 | 1 | 3 | 262 | 4 | 265 | 2.43e-76 | 233 |
| Msa0803250 | AT2G23810.1 | 42.966 | 263 | 147 | 2 | 4 | 263 | 5 | 267 | 3.22e-76 | 233 |
| Msa0803250 | AT5G60220.1 | 43.893 | 262 | 141 | 3 | 1 | 256 | 1 | 262 | 2.11e-63 | 202 |
| Msa0803250 | AT1G18520.1 | 38.550 | 262 | 153 | 4 | 3 | 257 | 4 | 264 | 5.32e-61 | 194 |
| Msa0803250 | AT3G12090.1 | 40.316 | 253 | 139 | 4 | 4 | 256 | 5 | 245 | 1.33e-58 | 188 |
| Msa0803250 | AT4G23410.1 | 37.066 | 259 | 152 | 3 | 3 | 261 | 4 | 251 | 3.23e-55 | 179 |
| Msa0803250 | AT1G63260.2 | 32.171 | 258 | 167 | 3 | 1 | 257 | 3 | 253 | 2.83e-54 | 176 |
| Msa0803250 | AT1G63260.6 | 32.510 | 243 | 162 | 2 | 1 | 242 | 3 | 244 | 3.47e-51 | 169 |
| Msa0803250 | AT1G63260.1 | 32.510 | 243 | 162 | 2 | 1 | 242 | 3 | 244 | 3.47e-51 | 169 |
| Msa0803250 | AT1G63260.3 | 32.510 | 243 | 162 | 2 | 1 | 242 | 3 | 244 | 4.55e-51 | 169 |
| Msa0803250 | AT1G63260.5 | 32.719 | 217 | 144 | 2 | 1 | 216 | 3 | 218 | 3.59e-46 | 154 |
| Msa0803250 | AT3G45600.2 | 43.275 | 171 | 92 | 2 | 1 | 166 | 1 | 171 | 3.08e-43 | 146 |
| Msa0803250 | AT2G03840.1 | 29.707 | 239 | 160 | 4 | 19 | 251 | 32 | 268 | 1.45e-37 | 134 |
| Msa0803250 | AT1G63260.4 | 30.337 | 178 | 123 | 1 | 1 | 178 | 3 | 179 | 2.28e-33 | 121 |
| Msa0803250 | AT5G23030.1 | 27.132 | 258 | 183 | 2 | 1 | 256 | 2 | 256 | 3.00e-31 | 117 |
| Msa0803250 | AT5G57810.1 | 26.316 | 133 | 82 | 1 | 131 | 247 | 173 | 305 | 4.51e-16 | 77.0 |
Find 49 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACCTAATAGGGCTTATT+TGG | 0.104253 | 5_3:+18268061 | Msa0803250:CDS |
| CTGGTCTCATTGGTTCCTTT+TGG | 0.214283 | 5_3:+18267925 | Msa0803250:CDS |
| CTCTTAGTTGTGTCTCTTGC+TGG | 0.223492 | 5_3:+18267906 | Msa0803250:CDS |
| ATGTCTGCTGCATTGTTTAT+TGG | 0.243435 | 5_3:-18268644 | None:intergenic |
| TATTATCTTGCTAGTTTGTT+TGG | 0.252856 | 5_3:+18267995 | Msa0803250:CDS |
| TAGCAACTAGGTAGAATATT+AGG | 0.309164 | 5_3:-18267962 | None:intergenic |
| TATTCCAAATAAGCCCTATT+AGG | 0.318593 | 5_3:-18268065 | None:intergenic |
| TTAATTGTGGTTTATTTGAT+TGG | 0.318944 | 5_3:+18268800 | Msa0803250:CDS |
| CAATCATTGGTGCTGGAATC+TGG | 0.324358 | 5_3:+18267814 | Msa0803250:CDS |
| ATGGTATGATTGAACCTAAT+AGG | 0.329364 | 5_3:+18268051 | Msa0803250:CDS |
| GCGAAAGAGATCCTCAGTTT+TGG | 0.353207 | 5_3:-18268843 | None:intergenic |
| GTGTCTCTTGCTGGTCTCAT+TGG | 0.354014 | 5_3:+18267915 | Msa0803250:CDS |
| GGCTTATTTGGAATACCGTT+TGG | 0.361064 | 5_3:+18268073 | Msa0803250:CDS |
| CTGGTTTGTTGGCAAATCTT+AGG | 0.375317 | 5_3:+18268729 | Msa0803250:CDS |
| CATTTGTGAACCCAACATAC+TGG | 0.397625 | 5_3:+18268615 | Msa0803250:CDS |
| TTGGACTAATCCAGTATGTT+GGG | 0.406980 | 5_3:-18268625 | None:intergenic |
| CAGATTCCAGCACCAATGAT+TGG | 0.408669 | 5_3:-18267813 | Msa0803240:CDS |
| TTTAACATTGGTGATGAAAT+TGG | 0.419620 | 5_3:+18268927 | Msa0803250:three_prime_UTR |
| AGTTGTAACAAAGTTGTGTT+TGG | 0.428684 | 5_3:-18268691 | None:intergenic |
| AGATTCCAGCACCAATGATT+GGG | 0.447069 | 5_3:-18267812 | Msa0803240:CDS |
| TGGTATGATTGAACCTAATA+GGG | 0.447157 | 5_3:+18268052 | Msa0803250:CDS |
| AACTGTGACTCATGCAAAGC+TGG | 0.452176 | 5_3:+18268710 | Msa0803250:CDS |
| GCAATGAGCAACAACATCAT+AGG | 0.463723 | 5_3:+18267756 | Msa0803250:CDS |
| ATTGGACTAATCCAGTATGT+TGG | 0.468680 | 5_3:-18268626 | None:intergenic |
| GTGTACATGGTTACTCTTCG+TGG | 0.469403 | 5_3:+18268026 | Msa0803250:CDS |
| ATCCTCTCAATCCCAATCAT+TGG | 0.477309 | 5_3:+18267801 | Msa0803250:CDS |
| CTCATGCAAAGCTGGTTTGT+TGG | 0.480759 | 5_3:+18268718 | Msa0803250:CDS |
| TCAATCCCAATCATTGGTGC+TGG | 0.481205 | 5_3:+18267807 | Msa0803250:CDS |
| CAGACATGGATTGTCTTCAA+TGG | 0.495893 | 5_3:+18268660 | Msa0803250:CDS |
| CAATGGCCAGTCATAATCCT+AGG | 0.501117 | 5_3:+18267876 | Msa0803250:CDS |
| TTGAGAGGATTACAGCTACT+AGG | 0.501297 | 5_3:-18267788 | Msa0803240:CDS |
| ATGGTTACTCTTCGTGGTCA+TGG | 0.501755 | 5_3:+18268032 | Msa0803250:CDS |
| TGGCAAATCTTAGGAAGGAA+TGG | 0.515362 | 5_3:+18268738 | Msa0803250:CDS |
| GAGACATGAGATTCTCCAAA+AGG | 0.523414 | 5_3:-18267940 | None:intergenic |
| CACCAATGATTGGGATTGAG+AGG | 0.525563 | 5_3:-18267803 | Msa0803240:CDS |
| AGCATGTAAGATGTAAAGCT+TGG | 0.526590 | 5_3:+18268901 | Msa0803250:three_prime_UTR |
| GTGTATGCACATTGTGTTGG+TGG | 0.546354 | 5_3:-18268593 | None:intergenic |
| TGCACGTCTTACACCAATGC+AGG | 0.553446 | 5_3:+18268229 | Msa0803250:CDS |
| AATAAACAATGCAGCAGACA+TGG | 0.558636 | 5_3:+18268646 | Msa0803250:CDS |
| TTTGTTGGCAAATCTTAGGA+AGG | 0.565313 | 5_3:+18268733 | Msa0803250:CDS |
| CTCTTTCGCAAGTACAAACA+AGG | 0.567497 | 5_3:+18268857 | Msa0803250:CDS |
| AAAGCTTGGTGCTTTAACAT+TGG | 0.572107 | 5_3:+18268915 | Msa0803250:three_prime_UTR |
| CTAGGATTATGACTGGCCAT+TGG | 0.581862 | 5_3:-18267875 | Msa0803240:CDS |
| CATGTGTAAAATTTCTCCAA+TGG | 0.584274 | 5_3:+18267859 | Msa0803250:CDS |
| TAAGCACAAGCATAGCAACT+AGG | 0.591892 | 5_3:-18267974 | None:intergenic |
| AGAACACCTAGGATTATGAC+TGG | 0.617019 | 5_3:-18267882 | Msa0803240:CDS |
| AATGTGTATGCACATTGTGT+TGG | 0.656084 | 5_3:-18268596 | None:intergenic |
| CAACTAAGAGAAGAACACCT+AGG | 0.686330 | 5_3:-18267893 | Msa0803240:CDS |
| CTTAGTGAAACAAATATGTG+TGG | 0.704201 | 5_3:+18268164 | Msa0803250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAAAAAATTACCTGCAT+TGG | - | chr5_3:18268245-18268264 | None:intergenic | 20.0% |
| !! | TTAAAGGGGAAAAAAATTAT+TGG | - | chr5_3:18268547-18268566 | None:intergenic | 20.0% |
| !! | AGACTGAAAAATAATTAAAG+GGG | - | chr5_3:18268561-18268580 | None:intergenic | 20.0% |
| !! | CAGACTGAAAAATAATTAAA+GGG | - | chr5_3:18268562-18268581 | None:intergenic | 20.0% |
| !!! | CTTTAATTATTTTTCAGTCT+GGG | + | chr5_3:18268561-18268580 | Msa0803250:intron | 20.0% |
| !! | TTAATTGTGGTTTATTTGAT+TGG | + | chr5_3:18268800-18268819 | Msa0803250:CDS | 20.0% |
| !! | TAAAAAAAAATTACCTGCAT+TGG | - | chr5_3:18268245-18268264 | None:intergenic | 20.0% |
| !! | TTAAAGGGGAAAAAAATTAT+TGG | - | chr5_3:18268547-18268566 | None:intergenic | 20.0% |
| !! | AGACTGAAAAATAATTAAAG+GGG | - | chr5_3:18268561-18268580 | None:intergenic | 20.0% |
| !! | CAGACTGAAAAATAATTAAA+GGG | - | chr5_3:18268562-18268581 | None:intergenic | 20.0% |
| !!! | CTTTAATTATTTTTCAGTCT+GGG | + | chr5_3:18268561-18268580 | Msa0803250:intron | 20.0% |
| !! | TTAATTGTGGTTTATTTGAT+TGG | + | chr5_3:18268800-18268819 | Msa0803250:CDS | 20.0% |
| !!! | TATTATCTTGCTAGTTTGTT+TGG | + | chr5_3:18267995-18268014 | Msa0803250:CDS | 25.0% |
| !!! | TTTGGTTATTTTTGTGTACA+TGG | + | chr5_3:18268013-18268032 | Msa0803250:CDS | 25.0% |
| !!! | AGTTAGAAGTTCTTTTAAGT+GGG | + | chr5_3:18268124-18268143 | Msa0803250:CDS | 25.0% |
| ! | CCAGACTGAAAAATAATTAA+AGG | - | chr5_3:18268563-18268582 | None:intergenic | 25.0% |
| !!! | CCTTTAATTATTTTTCAGTC+TGG | + | chr5_3:18268560-18268579 | Msa0803250:intron | 25.0% |
| !!! | TTTAACATTGGTGATGAAAT+TGG | + | chr5_3:18268927-18268946 | Msa0803250:three_prime_UTR | 25.0% |
| !!! | TATTATCTTGCTAGTTTGTT+TGG | + | chr5_3:18267995-18268014 | Msa0803250:CDS | 25.0% |
| !!! | TTTGGTTATTTTTGTGTACA+TGG | + | chr5_3:18268013-18268032 | Msa0803250:CDS | 25.0% |
| !!! | AGTTAGAAGTTCTTTTAAGT+GGG | + | chr5_3:18268124-18268143 | Msa0803250:CDS | 25.0% |
| ! | CCAGACTGAAAAATAATTAA+AGG | - | chr5_3:18268563-18268582 | None:intergenic | 25.0% |
| !!! | CCTTTAATTATTTTTCAGTC+TGG | + | chr5_3:18268560-18268579 | Msa0803250:intron | 25.0% |
| !!! | TTTAACATTGGTGATGAAAT+TGG | + | chr5_3:18268927-18268946 | Msa0803250:three_prime_UTR | 25.0% |
| CATGTGTAAAATTTCTCCAA+TGG | + | chr5_3:18267859-18267878 | Msa0803250:CDS | 30.0% | |
| TAGCAACTAGGTAGAATATT+AGG | - | chr5_3:18267965-18267984 | None:intergenic | 30.0% | |
| ATGGTATGATTGAACCTAAT+AGG | + | chr5_3:18268051-18268070 | Msa0803250:CDS | 30.0% | |
| TGGTATGATTGAACCTAATA+GGG | + | chr5_3:18268052-18268071 | Msa0803250:CDS | 30.0% | |
| TATTCCAAATAAGCCCTATT+AGG | - | chr5_3:18268068-18268087 | None:intergenic | 30.0% | |
| ! | GAGTTAGAAGTTCTTTTAAG+TGG | + | chr5_3:18268123-18268142 | Msa0803250:CDS | 30.0% |
| CTTAGTGAAACAAATATGTG+TGG | + | chr5_3:18268164-18268183 | Msa0803250:CDS | 30.0% | |
| ! | GTTGAATCAAAGTTTTCGTA+TGG | + | chr5_3:18268190-18268209 | Msa0803250:CDS | 30.0% |
| AGTTGTAACAAAGTTGTGTT+TGG | - | chr5_3:18268694-18268713 | None:intergenic | 30.0% | |
| !!! | CAGTGTTGTTGTTTTAATTG+TGG | + | chr5_3:18268787-18268806 | Msa0803250:CDS | 30.0% |
| CATGTGTAAAATTTCTCCAA+TGG | + | chr5_3:18267859-18267878 | Msa0803250:CDS | 30.0% | |
| TAGCAACTAGGTAGAATATT+AGG | - | chr5_3:18267965-18267984 | None:intergenic | 30.0% | |
| ATGGTATGATTGAACCTAAT+AGG | + | chr5_3:18268051-18268070 | Msa0803250:CDS | 30.0% | |
| TGGTATGATTGAACCTAATA+GGG | + | chr5_3:18268052-18268071 | Msa0803250:CDS | 30.0% | |
| TATTCCAAATAAGCCCTATT+AGG | - | chr5_3:18268068-18268087 | None:intergenic | 30.0% | |
| ! | GAGTTAGAAGTTCTTTTAAG+TGG | + | chr5_3:18268123-18268142 | Msa0803250:CDS | 30.0% |
| CTTAGTGAAACAAATATGTG+TGG | + | chr5_3:18268164-18268183 | Msa0803250:CDS | 30.0% | |
| ! | GTTGAATCAAAGTTTTCGTA+TGG | + | chr5_3:18268190-18268209 | Msa0803250:CDS | 30.0% |
| AGTTGTAACAAAGTTGTGTT+TGG | - | chr5_3:18268694-18268713 | None:intergenic | 30.0% | |
| !!! | CAGTGTTGTTGTTTTAATTG+TGG | + | chr5_3:18268787-18268806 | Msa0803250:CDS | 30.0% |
| ! | AATTTTACACATGTGTCTGC+TGG | - | chr5_3:18267852-18267871 | Msa0803240:CDS | 35.0% |
| TGAACCTAATAGGGCTTATT+TGG | + | chr5_3:18268061-18268080 | Msa0803250:CDS | 35.0% | |
| ! | TACCGTTTGGATGATTTTTC+TGG | + | chr5_3:18268086-18268105 | Msa0803250:CDS | 35.0% |
| ! | ACCGTTTGGATGATTTTTCT+GGG | + | chr5_3:18268087-18268106 | Msa0803250:CDS | 35.0% |
| ACCCAGAAAAATCATCCAAA+CGG | - | chr5_3:18268091-18268110 | None:intergenic | 35.0% | |
| !! | GATCTGTTTCTAGTTTCACT+CGG | - | chr5_3:18268304-18268323 | None:intergenic | 35.0% |
| ATCTCAAGATAAACCCACTT+CGG | + | chr5_3:18268334-18268353 | Msa0803250:intron | 35.0% | |
| !! | TGGAAGTGTGTTTCTCTTTT+AGG | + | chr5_3:18268384-18268403 | Msa0803250:intron | 35.0% |
| AATGTGTATGCACATTGTGT+TGG | - | chr5_3:18268599-18268618 | None:intergenic | 35.0% | |
| TTGGACTAATCCAGTATGTT+GGG | - | chr5_3:18268628-18268647 | None:intergenic | 35.0% | |
| ATTGGACTAATCCAGTATGT+TGG | - | chr5_3:18268629-18268648 | None:intergenic | 35.0% | |
| ATGTCTGCTGCATTGTTTAT+TGG | - | chr5_3:18268647-18268666 | None:intergenic | 35.0% | |
| AATAAACAATGCAGCAGACA+TGG | + | chr5_3:18268646-18268665 | Msa0803250:CDS | 35.0% | |
| TTTGTTGGCAAATCTTAGGA+AGG | + | chr5_3:18268733-18268752 | Msa0803250:CDS | 35.0% | |
| !! | TGATTGGTTGCTTTGCTTTT+AGG | + | chr5_3:18268816-18268835 | Msa0803250:CDS | 35.0% |
| !! | TTTTAGGAATGCCAAAACTG+AGG | + | chr5_3:18268832-18268851 | Msa0803250:CDS | 35.0% |
| AGCATGTAAGATGTAAAGCT+TGG | + | chr5_3:18268901-18268920 | Msa0803250:three_prime_UTR | 35.0% | |
| !! | AAAGCTTGGTGCTTTAACAT+TGG | + | chr5_3:18268915-18268934 | Msa0803250:three_prime_UTR | 35.0% |
| ! | AATTTTACACATGTGTCTGC+TGG | - | chr5_3:18267852-18267871 | Msa0803240:CDS | 35.0% |
| TGAACCTAATAGGGCTTATT+TGG | + | chr5_3:18268061-18268080 | Msa0803250:CDS | 35.0% | |
| ! | TACCGTTTGGATGATTTTTC+TGG | + | chr5_3:18268086-18268105 | Msa0803250:CDS | 35.0% |
| ! | ACCGTTTGGATGATTTTTCT+GGG | + | chr5_3:18268087-18268106 | Msa0803250:CDS | 35.0% |
| ACCCAGAAAAATCATCCAAA+CGG | - | chr5_3:18268091-18268110 | None:intergenic | 35.0% | |
| !! | GATCTGTTTCTAGTTTCACT+CGG | - | chr5_3:18268304-18268323 | None:intergenic | 35.0% |
| ATCTCAAGATAAACCCACTT+CGG | + | chr5_3:18268334-18268353 | Msa0803250:intron | 35.0% | |
| !! | TGGAAGTGTGTTTCTCTTTT+AGG | + | chr5_3:18268384-18268403 | Msa0803250:intron | 35.0% |
| AATGTGTATGCACATTGTGT+TGG | - | chr5_3:18268599-18268618 | None:intergenic | 35.0% | |
| TTGGACTAATCCAGTATGTT+GGG | - | chr5_3:18268628-18268647 | None:intergenic | 35.0% | |
| ATTGGACTAATCCAGTATGT+TGG | - | chr5_3:18268629-18268648 | None:intergenic | 35.0% | |
| ATGTCTGCTGCATTGTTTAT+TGG | - | chr5_3:18268647-18268666 | None:intergenic | 35.0% | |
| AATAAACAATGCAGCAGACA+TGG | + | chr5_3:18268646-18268665 | Msa0803250:CDS | 35.0% | |
| TTTGTTGGCAAATCTTAGGA+AGG | + | chr5_3:18268733-18268752 | Msa0803250:CDS | 35.0% | |
| !! | TGATTGGTTGCTTTGCTTTT+AGG | + | chr5_3:18268816-18268835 | Msa0803250:CDS | 35.0% |
| !! | TTTTAGGAATGCCAAAACTG+AGG | + | chr5_3:18268832-18268851 | Msa0803250:CDS | 35.0% |
| AGCATGTAAGATGTAAAGCT+TGG | + | chr5_3:18268901-18268920 | Msa0803250:three_prime_UTR | 35.0% | |
| !! | AAAGCTTGGTGCTTTAACAT+TGG | + | chr5_3:18268915-18268934 | Msa0803250:three_prime_UTR | 35.0% |
| GCAATGAGCAACAACATCAT+AGG | + | chr5_3:18267756-18267775 | Msa0803250:CDS | 40.0% | |
| TTGAGAGGATTACAGCTACT+AGG | - | chr5_3:18267791-18267810 | Msa0803240:CDS | 40.0% | |
| ATCCTCTCAATCCCAATCAT+TGG | + | chr5_3:18267801-18267820 | Msa0803250:CDS | 40.0% | |
| AGATTCCAGCACCAATGATT+GGG | - | chr5_3:18267815-18267834 | Msa0803240:CDS | 40.0% | |
| AGAACACCTAGGATTATGAC+TGG | - | chr5_3:18267885-18267904 | Msa0803240:CDS | 40.0% | |
| CAACTAAGAGAAGAACACCT+AGG | - | chr5_3:18267896-18267915 | Msa0803240:CDS | 40.0% | |
| GAGACATGAGATTCTCCAAA+AGG | - | chr5_3:18267943-18267962 | None:intergenic | 40.0% | |
| TAAGCACAAGCATAGCAACT+AGG | - | chr5_3:18267977-18267996 | None:intergenic | 40.0% | |
| ! | GGCTTATTTGGAATACCGTT+TGG | + | chr5_3:18268073-18268092 | Msa0803250:CDS | 40.0% |
| ! | TCAAAGTTTTCGTATGGCTC+AGG | + | chr5_3:18268196-18268215 | Msa0803250:CDS | 40.0% |
| !! | GGTGACATTGACTTGAAATC+TGG | + | chr5_3:18268364-18268383 | Msa0803250:intron | 40.0% |
| !! | GTGTTTCTCTTTTAGGTCTC+AGG | + | chr5_3:18268391-18268410 | Msa0803250:intron | 40.0% |
| !! | TTCTCTTTTAGGTCTCAGGT+TGG | + | chr5_3:18268395-18268414 | Msa0803250:intron | 40.0% |
| CATTTGTGAACCCAACATAC+TGG | + | chr5_3:18268615-18268634 | Msa0803250:CDS | 40.0% | |
| ! | CAGACATGGATTGTCTTCAA+TGG | + | chr5_3:18268660-18268679 | Msa0803250:CDS | 40.0% |
| !! | CTGGTTTGTTGGCAAATCTT+AGG | + | chr5_3:18268729-18268748 | Msa0803250:CDS | 40.0% |
| TGGCAAATCTTAGGAAGGAA+TGG | + | chr5_3:18268738-18268757 | Msa0803250:CDS | 40.0% | |
| CTCTTTCGCAAGTACAAACA+AGG | + | chr5_3:18268857-18268876 | Msa0803250:CDS | 40.0% | |
| GCAATGAGCAACAACATCAT+AGG | + | chr5_3:18267756-18267775 | Msa0803250:CDS | 40.0% | |
| TTGAGAGGATTACAGCTACT+AGG | - | chr5_3:18267791-18267810 | Msa0803240:CDS | 40.0% | |
| ATCCTCTCAATCCCAATCAT+TGG | + | chr5_3:18267801-18267820 | Msa0803250:CDS | 40.0% | |
| AGATTCCAGCACCAATGATT+GGG | - | chr5_3:18267815-18267834 | Msa0803240:CDS | 40.0% | |
| AGAACACCTAGGATTATGAC+TGG | - | chr5_3:18267885-18267904 | Msa0803240:CDS | 40.0% | |
| CAACTAAGAGAAGAACACCT+AGG | - | chr5_3:18267896-18267915 | Msa0803240:CDS | 40.0% | |
| GAGACATGAGATTCTCCAAA+AGG | - | chr5_3:18267943-18267962 | None:intergenic | 40.0% | |
| TAAGCACAAGCATAGCAACT+AGG | - | chr5_3:18267977-18267996 | None:intergenic | 40.0% | |
| ! | GGCTTATTTGGAATACCGTT+TGG | + | chr5_3:18268073-18268092 | Msa0803250:CDS | 40.0% |
| ! | TCAAAGTTTTCGTATGGCTC+AGG | + | chr5_3:18268196-18268215 | Msa0803250:CDS | 40.0% |
| !! | GGTGACATTGACTTGAAATC+TGG | + | chr5_3:18268364-18268383 | Msa0803250:intron | 40.0% |
| !! | GTGTTTCTCTTTTAGGTCTC+AGG | + | chr5_3:18268391-18268410 | Msa0803250:intron | 40.0% |
| !! | TTCTCTTTTAGGTCTCAGGT+TGG | + | chr5_3:18268395-18268414 | Msa0803250:intron | 40.0% |
| CATTTGTGAACCCAACATAC+TGG | + | chr5_3:18268615-18268634 | Msa0803250:CDS | 40.0% | |
| ! | CAGACATGGATTGTCTTCAA+TGG | + | chr5_3:18268660-18268679 | Msa0803250:CDS | 40.0% |
| !! | CTGGTTTGTTGGCAAATCTT+AGG | + | chr5_3:18268729-18268748 | Msa0803250:CDS | 40.0% |
| TGGCAAATCTTAGGAAGGAA+TGG | + | chr5_3:18268738-18268757 | Msa0803250:CDS | 40.0% | |
| CTCTTTCGCAAGTACAAACA+AGG | + | chr5_3:18268857-18268876 | Msa0803250:CDS | 40.0% | |
| CACCAATGATTGGGATTGAG+AGG | - | chr5_3:18267806-18267825 | Msa0803240:CDS | 45.0% | |
| TCAATCCCAATCATTGGTGC+TGG | + | chr5_3:18267807-18267826 | Msa0803250:CDS | 45.0% | |
| CAGATTCCAGCACCAATGAT+TGG | - | chr5_3:18267816-18267835 | Msa0803240:CDS | 45.0% | |
| !! | CAATCATTGGTGCTGGAATC+TGG | + | chr5_3:18267814-18267833 | Msa0803250:CDS | 45.0% |
| ! | CTAGGATTATGACTGGCCAT+TGG | - | chr5_3:18267878-18267897 | Msa0803240:CDS | 45.0% |
| CAATGGCCAGTCATAATCCT+AGG | + | chr5_3:18267876-18267895 | Msa0803250:CDS | 45.0% | |
| CTCTTAGTTGTGTCTCTTGC+TGG | + | chr5_3:18267906-18267925 | Msa0803250:CDS | 45.0% | |
| !!! | CTGGTCTCATTGGTTCCTTT+TGG | + | chr5_3:18267925-18267944 | Msa0803250:CDS | 45.0% |
| GTGTACATGGTTACTCTTCG+TGG | + | chr5_3:18268026-18268045 | Msa0803250:CDS | 45.0% | |
| ATGGTTACTCTTCGTGGTCA+TGG | + | chr5_3:18268032-18268051 | Msa0803250:CDS | 45.0% | |
| CAAGATAAACCCACTTCGGT+TGG | + | chr5_3:18268338-18268357 | Msa0803250:intron | 45.0% | |
| GTGTATGCACATTGTGTTGG+TGG | - | chr5_3:18268596-18268615 | None:intergenic | 45.0% | |
| AACTGTGACTCATGCAAAGC+TGG | + | chr5_3:18268710-18268729 | Msa0803250:CDS | 45.0% | |
| !! | CTCATGCAAAGCTGGTTTGT+TGG | + | chr5_3:18268718-18268737 | Msa0803250:CDS | 45.0% |
| ! | GCGAAAGAGATCCTCAGTTT+TGG | - | chr5_3:18268846-18268865 | None:intergenic | 45.0% |
| CACCAATGATTGGGATTGAG+AGG | - | chr5_3:18267806-18267825 | Msa0803240:CDS | 45.0% | |
| TCAATCCCAATCATTGGTGC+TGG | + | chr5_3:18267807-18267826 | Msa0803250:CDS | 45.0% | |
| CAGATTCCAGCACCAATGAT+TGG | - | chr5_3:18267816-18267835 | Msa0803240:CDS | 45.0% | |
| !! | CAATCATTGGTGCTGGAATC+TGG | + | chr5_3:18267814-18267833 | Msa0803250:CDS | 45.0% |
| ! | CTAGGATTATGACTGGCCAT+TGG | - | chr5_3:18267878-18267897 | Msa0803240:CDS | 45.0% |
| CAATGGCCAGTCATAATCCT+AGG | + | chr5_3:18267876-18267895 | Msa0803250:CDS | 45.0% | |
| CTCTTAGTTGTGTCTCTTGC+TGG | + | chr5_3:18267906-18267925 | Msa0803250:CDS | 45.0% | |
| !!! | CTGGTCTCATTGGTTCCTTT+TGG | + | chr5_3:18267925-18267944 | Msa0803250:CDS | 45.0% |
| GTGTACATGGTTACTCTTCG+TGG | + | chr5_3:18268026-18268045 | Msa0803250:CDS | 45.0% | |
| ATGGTTACTCTTCGTGGTCA+TGG | + | chr5_3:18268032-18268051 | Msa0803250:CDS | 45.0% | |
| CAAGATAAACCCACTTCGGT+TGG | + | chr5_3:18268338-18268357 | Msa0803250:intron | 45.0% | |
| GTGTATGCACATTGTGTTGG+TGG | - | chr5_3:18268596-18268615 | None:intergenic | 45.0% | |
| AACTGTGACTCATGCAAAGC+TGG | + | chr5_3:18268710-18268729 | Msa0803250:CDS | 45.0% | |
| !! | CTCATGCAAAGCTGGTTTGT+TGG | + | chr5_3:18268718-18268737 | Msa0803250:CDS | 45.0% |
| ! | GCGAAAGAGATCCTCAGTTT+TGG | - | chr5_3:18268846-18268865 | None:intergenic | 45.0% |
| ! | GTGTCTCTTGCTGGTCTCAT+TGG | + | chr5_3:18267915-18267934 | Msa0803250:CDS | 50.0% |
| TGCACGTCTTACACCAATGC+AGG | + | chr5_3:18268229-18268248 | Msa0803250:CDS | 50.0% | |
| ! | TAAACCCACTTCGGTTGGTC+TGG | + | chr5_3:18268343-18268362 | Msa0803250:intron | 50.0% |
| ! | GTGTCTCTTGCTGGTCTCAT+TGG | + | chr5_3:18267915-18267934 | Msa0803250:CDS | 50.0% |
| TGCACGTCTTACACCAATGC+AGG | + | chr5_3:18268229-18268248 | Msa0803250:CDS | 50.0% | |
| ! | TAAACCCACTTCGGTTGGTC+TGG | + | chr5_3:18268343-18268362 | Msa0803250:intron | 50.0% |
| GTCACCAGACCAACCGAAGT+GGG | - | chr5_3:18268350-18268369 | None:intergenic | 55.0% | |
| TGTCACCAGACCAACCGAAG+TGG | - | chr5_3:18268351-18268370 | None:intergenic | 55.0% | |
| GTCACCAGACCAACCGAAGT+GGG | - | chr5_3:18268350-18268369 | None:intergenic | 55.0% | |
| TGTCACCAGACCAACCGAAG+TGG | - | chr5_3:18268351-18268370 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 18267753 | 18269019 | 18267753 | ID=Msa0803250;Name=Msa0803250 |
| chr5_3 | mRNA | 18267753 | 18269019 | 18267753 | ID=Msa0803250-mRNA-1;Parent=Msa0803250;Name=Msa0803250-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.5|1|1|1|2|130|269 |
| chr5_3 | exon | 18267753 | 18268250 | 18267753 | ID=Msa0803250-mRNA-1:exon:7482;Parent=Msa0803250-mRNA-1 |
| chr5_3 | exon | 18268578 | 18269019 | 18268578 | ID=Msa0803250-mRNA-1:exon:7483;Parent=Msa0803250-mRNA-1 |
| chr5_3 | CDS | 18267753 | 18268250 | 18267753 | ID=Msa0803250-mRNA-1:cds;Parent=Msa0803250-mRNA-1 |
| chr5_3 | CDS | 18268578 | 18268889 | 18268578 | ID=Msa0803250-mRNA-1:cds;Parent=Msa0803250-mRNA-1 |
| chr5_3 | three_prime_UTR | 18268890 | 18269019 | 18268890 | ID=Msa0803250-mRNA-1:three_prime_utr;Parent=Msa0803250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
