Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0703850 | XP_013446814.1 | 94.150 | 359 | 18 | 2 | 1 | 359 | 1 | 356 | 0.0 | 656 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0703850 | sp|A8KBE0|OXR1_XENTR | 39.181 | 171 | 100 | 3 | 167 | 336 | 702 | 869 | 5.59e-25 | 109 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0703850 | A0A072TUK2 | 94.150 | 359 | 18 | 2 | 1 | 359 | 1 | 356 | 0.0 | 656 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0065680 | Msa0703850 | -0.800314 | 1.527229e-48 | -8.615850e-47 |
| Msa0613110 | Msa0703850 | 0.804162 | 2.465866e-49 | -8.615850e-47 |
| Msa0638350 | Msa0703850 | 0.815695 | 8.103946e-52 | -8.615850e-47 |
| Msa0638360 | Msa0703850 | 0.804207 | 2.412862e-49 | -8.615850e-47 |
| Msa0695870 | Msa0703850 | 0.806013 | 1.010782e-49 | -8.615850e-47 |
| Msa0703780 | Msa0703850 | 0.880847 | 3.915561e-70 | -8.615850e-47 |
| Msa0703850 | Msa0711150 | 0.807654 | 4.548966e-50 | -8.615850e-47 |
| Msa0703850 | Msa0831850 | 0.816822 | 4.535798e-52 | -8.615850e-47 |
| Msa0703850 | Msa0844490 | 0.802861 | 4.587964e-49 | -8.615850e-47 |
| Msa0703850 | Msa0880810 | 0.805773 | 1.135596e-49 | -8.615850e-47 |
| Msa0703850 | Msa0902830 | 0.816461 | 5.465945e-52 | -8.615850e-47 |
| Msa0703850 | Msa0927380 | 0.819532 | 1.105707e-52 | -8.615850e-47 |
| Msa0703850 | Msa0960740 | 0.807299 | 5.408703e-50 | -8.615850e-47 |
| Msa0703850 | Msa0969370 | 0.810433 | 1.155614e-50 | -8.615850e-47 |
| Msa0703850 | Msa1026940 | 0.814952 | 1.185508e-51 | -8.615850e-47 |
| Msa0703850 | Msa1064250 | 0.800051 | 1.727623e-48 | -8.615850e-47 |
| Msa0703850 | Msa1076960 | 0.804636 | 1.964178e-49 | -8.615850e-47 |
| Msa0703850 | Msa1111870 | 0.800319 | 1.523807e-48 | -8.615850e-47 |
| Msa0703850 | Msa1115240 | 0.813774 | 2.158729e-51 | -8.615850e-47 |
| Msa0703850 | Msa1122860 | 0.806714 | 7.193731e-50 | -8.615850e-47 |
| Msa0703850 | Msa1150850 | 0.805079 | 1.587218e-49 | -8.615850e-47 |
| Msa0703850 | Msa1177780 | 0.813481 | 2.504812e-51 | -8.615850e-47 |
| Msa0703850 | Msa1218580 | 0.802412 | 5.678730e-49 | -8.615850e-47 |
| Msa0703850 | Msa1225100 | 0.804942 | 1.695659e-49 | -8.615850e-47 |
| Msa0703850 | Msa1329870 | 0.802116 | 6.535763e-49 | -8.615850e-47 |
| Msa0703850 | Msa1332050 | 0.802429 | 5.633452e-49 | -8.615850e-47 |
| Msa0703850 | Msa1355890 | 0.814394 | 1.575845e-51 | -8.615850e-47 |
| Msa0703850 | Msa1405220 | 0.801148 | 1.032230e-48 | -8.615850e-47 |
| Msa0703850 | Msa1433350 | 0.903261 | 4.163733e-79 | -8.615850e-47 |
| Msa0207350 | Msa0703850 | 0.801686 | 8.007889e-49 | -8.615850e-47 |
| Msa0369920 | Msa0703850 | 0.806343 | 8.612458e-50 | -8.615850e-47 |
| Msa0382370 | Msa0703850 | 0.801279 | 9.704479e-49 | -8.615850e-47 |
| Msa0417330 | Msa0703850 | 0.809018 | 2.327499e-50 | -8.615850e-47 |
| Msa0432160 | Msa0703850 | 0.814287 | 1.663878e-51 | -8.615850e-47 |
| Msa0476680 | Msa0703850 | 0.815985 | 6.983788e-52 | -8.615850e-47 |
| Msa0240270 | Msa0703850 | 0.803119 | 4.058974e-49 | -8.615850e-47 |
| Msa0241140 | Msa0703850 | 0.806520 | 7.905805e-50 | -8.615850e-47 |
| Msa0296820 | Msa0703850 | 0.814161 | 1.773931e-51 | -8.615850e-47 |
| Msa0521010 | Msa0703850 | 0.818211 | 2.206149e-52 | -8.615850e-47 |
| Msa0521740 | Msa0703850 | 0.805358 | 1.387102e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0703850 | MtrunA17_Chr8g0382261 | 94.150 | 359 | 18 | 2 | 1 | 359 | 1 | 356 | 0.0 | 656 |
| Msa0703850 | MtrunA17_Chr3g0124001 | 58.442 | 385 | 121 | 12 | 1 | 359 | 1 | 372 | 5.36e-138 | 397 |
| Msa0703850 | MtrunA17_Chr1g0186161 | 56.395 | 172 | 75 | 0 | 166 | 337 | 137 | 308 | 3.96e-62 | 201 |
| Msa0703850 | MtrunA17_Chr1g0168381 | 61.017 | 59 | 23 | 0 | 275 | 333 | 12 | 70 | 7.86e-14 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0703850 | AT4G39870.2 | 48.762 | 404 | 151 | 8 | 1 | 359 | 1 | 393 | 5.68e-119 | 350 |
| Msa0703850 | AT4G39870.1 | 48.762 | 404 | 151 | 8 | 1 | 359 | 1 | 393 | 5.68e-119 | 350 |
| Msa0703850 | AT2G05590.2 | 55.000 | 180 | 81 | 0 | 163 | 342 | 122 | 301 | 6.79e-69 | 218 |
| Msa0703850 | AT2G05590.1 | 54.930 | 142 | 64 | 0 | 163 | 304 | 122 | 263 | 1.50e-52 | 175 |
| Msa0703850 | AT5G06260.2 | 29.114 | 158 | 99 | 5 | 197 | 344 | 174 | 328 | 7.54e-14 | 72.4 |
| Msa0703850 | AT5G06260.1 | 29.114 | 158 | 99 | 5 | 197 | 344 | 238 | 392 | 8.02e-14 | 72.8 |
| Msa0703850 | AT5G06260.3 | 29.114 | 158 | 99 | 5 | 197 | 344 | 149 | 303 | 1.04e-13 | 71.6 |
Find 114 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTCCTTCACTTGAAATTC+TGG | 0.230950 | 4_4:+75874434 | None:intergenic |
| GGTTTGTTATGGTCAGAAAT+AGG | 0.233665 | 4_4:+75877543 | None:intergenic |
| GGTAGATGATGATGAGTTAA+AGG | 0.279770 | 4_4:-75877389 | Msa0703850:CDS |
| TAGATTATGAATTATGATAA+AGG | 0.297309 | 4_4:-75877748 | Msa0703850:five_prime_UTR |
| AGTTCGGTTTCCGAAACTTA+TGG | 0.320071 | 4_4:-75874479 | Msa0703850:CDS |
| TATCACTTTCAACTCTTTAC+CGG | 0.326685 | 4_4:-75876780 | Msa0703850:CDS |
| GCACTTCCGGCTTTAATTCA+TGG | 0.329830 | 4_4:-75876953 | Msa0703850:CDS |
| ACATGCTTGTAAATATTTGC+AGG | 0.331389 | 4_4:-75874000 | Msa0703850:three_prime_UTR |
| CAACCAATTTCTCATTCATT+TGG | 0.340463 | 4_4:+75877227 | None:intergenic |
| TCAAGAAGGGATTGTTATCT+AGG | 0.341466 | 4_4:-75877204 | Msa0703850:CDS |
| TTCTCTTGTTGGATGGTTGA+AGG | 0.342424 | 4_4:+75875861 | None:intergenic |
| GTTTGTTATGGTCAGAAATA+GGG | 0.345242 | 4_4:+75877544 | None:intergenic |
| TGCGGTTTATGATGCACTTC+CGG | 0.349970 | 4_4:-75876966 | Msa0703850:CDS |
| TTGGCCTGGACCTAGTTTGC+TGG | 0.351025 | 4_4:-75876746 | Msa0703850:intron |
| TGATCATTTGCCGGAAATAT+CGG | 0.357645 | 4_4:-75877023 | Msa0703850:CDS |
| CAAAGCAGTTCACCTTGTTT+CGG | 0.358183 | 4_4:-75877589 | Msa0703850:CDS |
| ACAAGGATTGCCATAAGTTT+CGG | 0.368495 | 4_4:+75874469 | None:intergenic |
| TGACCAAATGAATGAGAAAT+TGG | 0.373689 | 4_4:-75877230 | Msa0703850:CDS |
| ATTGAAGGTTCCGATATTTC+CGG | 0.382091 | 4_4:+75877013 | None:intergenic |
| CATATCAACTCAAGATTGAA+TGG | 0.382180 | 4_4:-75874506 | Msa0703850:intron |
| AGATTATGAATTATGATAAA+GGG | 0.382482 | 4_4:-75877747 | Msa0703850:five_prime_UTR |
| CTTTAATTCATGGGAAGAAC+TGG | 0.407743 | 4_4:-75876943 | Msa0703850:CDS |
| AGGAGCAGTGTTTGGTGGCT+TGG | 0.413328 | 4_4:-75875894 | Msa0703850:CDS |
| TAATGACGGTGAGGGAATAT+AGG | 0.417137 | 4_4:-75877720 | Msa0703850:five_prime_UTR |
| TTTGGTTGTTGATCATTTGC+CGG | 0.432855 | 4_4:-75877032 | Msa0703850:CDS |
| GACCGAAAAGGAGCAGTGTT+TGG | 0.438263 | 4_4:-75875902 | Msa0703850:CDS |
| CTTTGCAGCACATGGAAACA+TGG | 0.442796 | 4_4:-75876805 | Msa0703850:intron |
| GCAGTAAACGACGACGTATC+AGG | 0.445057 | 4_4:+75877343 | None:intergenic |
| ACCACTGACTTTCTAGCGAT+TGG | 0.446127 | 4_4:-75874672 | Msa0703850:CDS |
| TGTTGATTTCGAATAGTTTG+AGG | 0.450543 | 4_4:-75876991 | Msa0703850:CDS |
| AAGATTGAATGGGTCAAGTT+CGG | 0.451165 | 4_4:-75874495 | Msa0703850:CDS |
| TGAGAAATTGGTTGTCAAGA+AGG | 0.453693 | 4_4:-75877218 | Msa0703850:CDS |
| TTTACCGGAGAAGTATGCTT+TGG | 0.460274 | 4_4:-75876765 | Msa0703850:CDS |
| CAGGTTGTTGGAGACCGAAA+AGG | 0.462680 | 4_4:-75875914 | Msa0703850:CDS |
| AATTATTGTTTAGGAAGAAA+AGG | 0.466326 | 4_4:-75877410 | Msa0703850:intron |
| TGAAATTGTACCAGCAAACT+AGG | 0.469728 | 4_4:+75876736 | None:intergenic |
| CGGAGAAGTATGCTTTGGCC+TGG | 0.471135 | 4_4:-75876760 | Msa0703850:CDS |
| AGTTCATACCCATTACAAAA+TGG | 0.475573 | 4_4:-75873959 | Msa0703850:three_prime_UTR |
| CACTTCCGGCTTTAATTCAT+GGG | 0.478819 | 4_4:-75876952 | Msa0703850:CDS |
| AGAGGTACCTAGTGTGCCTT+TGG | 0.478962 | 4_4:-75877050 | Msa0703850:CDS |
| CCTGTCGTATATCGCCCAAC+AGG | 0.479602 | 4_4:-75875687 | Msa0703850:intron |
| GATAAGATTGTGACTGCAGC+TGG | 0.481152 | 4_4:-75877262 | Msa0703850:CDS |
| CAAGAAGGGATTGTTATCTA+GGG | 0.481467 | 4_4:-75877203 | Msa0703850:CDS |
| ACTGACTTTCTAGCGATTGG+TGG | 0.489834 | 4_4:-75874669 | Msa0703850:CDS |
| TCTCTTGTTGGATGGTTGAA+GGG | 0.490005 | 4_4:+75875862 | None:intergenic |
| AGGGATAAATTTGAGTCTGA+TGG | 0.490332 | 4_4:-75877112 | Msa0703850:CDS |
| CTATTCGAAATCAACATTGA+AGG | 0.490666 | 4_4:+75876998 | None:intergenic |
| GAGAAATTGGTTGTCAAGAA+GGG | 0.491672 | 4_4:-75877217 | Msa0703850:CDS |
| TCCCTTTCGCCATCTTGTGT+TGG | 0.498135 | 4_4:+75877130 | None:intergenic |
| GACTTTCTAGCGATTGGTGG+GGG | 0.501174 | 4_4:-75874666 | Msa0703850:CDS |
| ATTTATCTATCTGCTAGAAC+GGG | 0.507739 | 4_4:-75877160 | Msa0703850:CDS |
| GAGGACGAGAGGGTTTGTTA+TGG | 0.508533 | 4_4:+75877532 | None:intergenic |
| TTCTCCAGAATTTCAAGTGA+AGG | 0.510211 | 4_4:-75874438 | Msa0703850:CDS |
| TATTTATCTATCTGCTAGAA+CGG | 0.513283 | 4_4:-75877161 | Msa0703850:CDS |
| TTGAGCAAAACAGAGGCACC+TGG | 0.517709 | 4_4:-75874204 | Msa0703850:CDS |
| CTTTCCTCCATGCAGTTGTG+GGG | 0.519234 | 4_4:-75874264 | Msa0703850:intron |
| AGAACTGGTTAATGATGTAC+AGG | 0.519562 | 4_4:-75876928 | Msa0703850:intron |
| AGGCACCTGGGATCTCTCGC+TGG | 0.521785 | 4_4:-75874191 | Msa0703850:CDS |
| GGTGTTGATGATTATGCTGC+CGG | 0.521825 | 4_4:+75877803 | None:intergenic |
| AATTGCAATTTCTGCTAGCA+AGG | 0.522215 | 4_4:-75874088 | Msa0703850:three_prime_UTR |
| CTCTTGTTGGATGGTTGAAG+GGG | 0.527238 | 4_4:+75875863 | None:intergenic |
| TTCTTCCCATGAATTAAAGC+CGG | 0.530383 | 4_4:+75876947 | None:intergenic |
| CTGACTTTCTAGCGATTGGT+GGG | 0.531876 | 4_4:-75874668 | Msa0703850:CDS |
| TCATTCATTTGGTCATCACC+AGG | 0.532498 | 4_4:+75877238 | None:intergenic |
| TGATAAAGGGATTGTAATGA+CGG | 0.536835 | 4_4:-75877734 | Msa0703850:five_prime_UTR |
| GGGATAAATTTGAGTCTGAT+GGG | 0.537744 | 4_4:-75877111 | Msa0703850:CDS |
| CGAAAAGGAGCAGTGTTTGG+TGG | 0.540629 | 4_4:-75875899 | Msa0703850:CDS |
| ATATTTACAAGCATGTTACA+TGG | 0.546363 | 4_4:+75874007 | None:intergenic |
| AATTGAGAACTTACTATGGA+AGG | 0.547869 | 4_4:+75877510 | None:intergenic |
| ATATCAACTCAAGATTGAAT+GGG | 0.549497 | 4_4:-75874505 | Msa0703850:intron |
| TGTATTTCCTTCAAAACATG+AGG | 0.552112 | 4_4:-75874238 | Msa0703850:CDS |
| CAGGCCAAAGCATACTTCTC+CGG | 0.555164 | 4_4:+75876761 | None:intergenic |
| GAAAGTGAATCAGAGATTGA+AGG | 0.560111 | 4_4:-75877367 | Msa0703850:CDS |
| ATTGTGACTGCAGCTGGACC+TGG | 0.567414 | 4_4:-75877256 | Msa0703850:CDS |
| TTCCAACACAAGATGGCGAA+AGG | 0.567792 | 4_4:-75877132 | Msa0703850:CDS |
| CATGTTACATGGTGATAACA+TGG | 0.568306 | 4_4:+75874018 | None:intergenic |
| TGTACCAGCAAACTAGGTCC+AGG | 0.570453 | 4_4:+75876742 | None:intergenic |
| TCAACAACCAAAGGCACACT+AGG | 0.571234 | 4_4:+75877043 | None:intergenic |
| CATGCTTGTAAATATTTGCA+GGG | 0.571962 | 4_4:-75873999 | Msa0703850:three_prime_UTR |
| TCCAACACAAGATGGCGAAA+GGG | 0.576200 | 4_4:-75877131 | Msa0703850:CDS |
| GGTGGATTTCCAACACAAGA+TGG | 0.577445 | 4_4:-75877139 | Msa0703850:CDS |
| TTTGCAGCACATGGAAACAT+GGG | 0.579278 | 4_4:-75876804 | Msa0703850:intron |
| ATTTCAAGTGAAGGAAGTAG+AGG | 0.579766 | 4_4:-75874429 | Msa0703850:intron |
| TTCGAATAGTTTGAGGAATG+CGG | 0.583662 | 4_4:-75876984 | Msa0703850:CDS |
| TATCTATCTGCTAGAACGGG+TGG | 0.584754 | 4_4:-75877157 | Msa0703850:CDS |
| AGGGATTGTAATGACGGTGA+GGG | 0.585410 | 4_4:-75877728 | Msa0703850:five_prime_UTR |
| GCATACTTAAAAGAAAATGA+AGG | 0.587044 | 4_4:-75873894 | Msa0703850:three_prime_UTR |
| ATCCAACAAGAGAAAATACC+AGG | 0.596747 | 4_4:-75875852 | Msa0703850:intron |
| AAGGGATTGTAATGACGGTG+AGG | 0.597285 | 4_4:-75877729 | Msa0703850:five_prime_UTR |
| CAGTGGTGAGATCCGAAACA+AGG | 0.598925 | 4_4:+75877577 | None:intergenic |
| TGGTGCAAAGTGTGAAGTAA+CGG | 0.599281 | 4_4:+75874691 | None:intergenic |
| ATTTACCAGCGAGAGATCCC+AGG | 0.600370 | 4_4:+75874186 | None:intergenic |
| TGACTTTCTAGCGATTGGTG+GGG | 0.600382 | 4_4:-75874667 | Msa0703850:CDS |
| ATTGCAATTTCTGCTAGCAA+GGG | 0.601315 | 4_4:-75874087 | Msa0703850:three_prime_UTR |
| CCTGTTGGGCGATATACGAC+AGG | 0.602267 | 4_4:+75875687 | None:intergenic |
| AAATTTGAGTCTGATGGGTG+TGG | 0.614316 | 4_4:-75877106 | Msa0703850:CDS |
| GGCAAATGATCAACAACCAA+AGG | 0.615389 | 4_4:+75877034 | None:intergenic |
| TGAGTCTGATGGGTGTGGTG+TGG | 0.621546 | 4_4:-75877101 | Msa0703850:CDS |
| TGAGCAAAACAGAGGCACCT+GGG | 0.621947 | 4_4:-75874203 | Msa0703850:CDS |
| TCAGTAAAATGCGAACTGCA+AGG | 0.623392 | 4_4:+75874133 | None:intergenic |
| TCTGGAGAATGTGCTAAACA+AGG | 0.634055 | 4_4:+75874452 | None:intergenic |
| ACTATGGAAGGAGGACGAGA+GGG | 0.634975 | 4_4:+75877522 | None:intergenic |
| TACTATGGAAGGAGGACGAG+AGG | 0.638442 | 4_4:+75877521 | None:intergenic |
| ACTAAAATTGAGCAAAACAG+AGG | 0.638548 | 4_4:-75874211 | Msa0703850:CDS |
| ACCAATCGCTAGAAAGTCAG+TGG | 0.645879 | 4_4:+75874671 | None:intergenic |
| AAGAAGGGATTGTTATCTAG+GGG | 0.664052 | 4_4:-75877202 | Msa0703850:CDS |
| TGAGAACTTACTATGGAAGG+AGG | 0.668946 | 4_4:+75877513 | None:intergenic |
| CTAGGTACCTCTTTCAACGG+CGG | 0.669452 | 4_4:+75877061 | None:intergenic |
| AATAGGGTTGAGAAGAACAG+TGG | 0.691115 | 4_4:+75877560 | None:intergenic |
| ACACTAGGTACCTCTTTCAA+CGG | 0.691173 | 4_4:+75877058 | None:intergenic |
| TTACATGGTGATAACATGGG+TGG | 0.696576 | 4_4:+75874022 | None:intergenic |
| AAATGAGTCACAAAATGACG+TGG | 0.704034 | 4_4:+75873867 | None:intergenic |
| ATGTTACATGGTGATAACAT+GGG | 0.733161 | 4_4:+75874019 | None:intergenic |
| ATTATCTCTAGAATCCGACG+AGG | 0.791211 | 4_4:+75877297 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTAAAAAATAATTAAA+CGG | - | chr4_4:75873938-75873957 | Msa0703850:three_prime_UTR | 0.0% |
| !! | TGTATATTAAATTATTGTTT+AGG | - | chr4_4:75874209-75874228 | Msa0703850:CDS | 10.0% |
| !!! | ATTTTGTTTAGAATAAAAAT+TGG | - | chr4_4:75877695-75877714 | Msa0703850:five_prime_UTR | 10.0% |
| !! | TAGATTATGAATTATGATAA+AGG | - | chr4_4:75873880-75873899 | Msa0703850:three_prime_UTR | 15.0% |
| !! | AGATTATGAATTATGATAAA+GGG | - | chr4_4:75873881-75873900 | Msa0703850:three_prime_UTR | 15.0% |
| !! | ATTAAAAAATAATTAAACGG+TGG | - | chr4_4:75873941-75873960 | Msa0703850:three_prime_UTR | 15.0% |
| !!! | TTTTTTCTATTCCTATTTTT+AGG | + | chr4_4:75873990-75874009 | None:intergenic | 15.0% |
| !!! | ATTTAATTGATAATCTTATG+TGG | - | chr4_4:75874797-75874816 | Msa0703850:intron | 15.0% |
| !! | ACTGTAATTTATTGAATATA+TGG | - | chr4_4:75875186-75875205 | Msa0703850:intron | 15.0% |
| !! | TGTATTACTAAATCAATAAT+AGG | - | chr4_4:75876083-75876102 | Msa0703850:intron | 15.0% |
| !! | ATTATAGAAAGAAAAAATCT+GGG | - | chr4_4:75876838-75876857 | Msa0703850:intron | 15.0% |
| !! | GATGATATTATAATTATAGA+GGG | + | chr4_4:75877071-75877090 | None:intergenic | 15.0% |
| !! | TGATGATATTATAATTATAG+AGG | + | chr4_4:75877072-75877091 | None:intergenic | 15.0% |
| !! | AATTGCAACAAAAAAAAATT+AGG | + | chr4_4:75877096-75877115 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTGTTGCAATTTT+TGG | - | chr4_4:75877098-75877117 | Msa0703850:CDS | 15.0% |
| !!! | GTAATAATAAAAAGAGGTTT+TGG | + | chr4_4:75873849-75873868 | None:intergenic | 20.0% |
| !! | GTTGTTGTAATAATAAAAAG+AGG | + | chr4_4:75873855-75873874 | None:intergenic | 20.0% |
| !!! | TATTCCTATTTTTAGGAATT+AGG | + | chr4_4:75873983-75874002 | None:intergenic | 20.0% |
| !! | ATAGGAATAGAAAAAAGAAA+TGG | - | chr4_4:75873994-75874013 | Msa0703850:three_prime_UTR | 20.0% |
| !! | TAGGAATAGAAAAAAGAAAT+GGG | - | chr4_4:75873995-75874014 | Msa0703850:three_prime_UTR | 20.0% |
| !! | AATTATTGTTTAGGAAGAAA+AGG | - | chr4_4:75874218-75874237 | Msa0703850:CDS | 20.0% |
| !!! | TTTTGTATTAAGGTTTTTGA+AGG | - | chr4_4:75874726-75874745 | Msa0703850:intron | 20.0% |
| !! | AAATAGCTAACAATACATTA+AGG | + | chr4_4:75875689-75875708 | None:intergenic | 20.0% |
| !! | AAAATTAACATTGTTGCAAA+GGG | + | chr4_4:75875841-75875860 | None:intergenic | 20.0% |
| !! | TAAAATTAACATTGTTGCAA+AGG | + | chr4_4:75875842-75875861 | None:intergenic | 20.0% |
| !!! | AATTATCAGTTTTAATGACA+TGG | - | chr4_4:75876212-75876231 | Msa0703850:intron | 20.0% |
| !!! | TTTTTCTTTCTATAATCATG+TGG | + | chr4_4:75876834-75876853 | None:intergenic | 20.0% |
| !! | GATTATAGAAAGAAAAAATC+TGG | - | chr4_4:75876837-75876856 | Msa0703850:intron | 20.0% |
| !!! | ATGATTTGTTTGATGAAAAA+AGG | + | chr4_4:75877041-75877060 | None:intergenic | 20.0% |
| !! | ATATTATAATTATAGAGGGA+AGG | + | chr4_4:75877067-75877086 | None:intergenic | 20.0% |
| !!! | AAAATAGACCATTTTGTAAT+GGG | + | chr4_4:75877680-75877699 | None:intergenic | 20.0% |
| ! | GATTCCTAATTCCTAAAAAT+AGG | - | chr4_4:75873976-75873995 | Msa0703850:three_prime_UTR | 25.0% |
| ! | AGGAATAGAAAAAAGAAATG+GGG | - | chr4_4:75873996-75874015 | Msa0703850:three_prime_UTR | 25.0% |
| ! | TGCAATTAAAGCTATAATCT+AGG | + | chr4_4:75874146-75874165 | None:intergenic | 25.0% |
| ! | TATTTATCTATCTGCTAGAA+CGG | - | chr4_4:75874467-75874486 | Msa0703850:CDS | 25.0% |
| ! | AAAGTAAGAAAGAACAAACA+TGG | + | chr4_4:75874960-75874979 | None:intergenic | 25.0% |
| !! | TAGACAATTTGATAATCTCT+AGG | - | chr4_4:75874982-75875001 | Msa0703850:intron | 25.0% |
| !! | AGACAATTTGATAATCTCTA+GGG | - | chr4_4:75874983-75875002 | Msa0703850:intron | 25.0% |
| ! | AATGGAACAAAAATATGTGT+AGG | + | chr4_4:75875240-75875259 | None:intergenic | 25.0% |
| ! | ATCTATAGCTCAATTCTAAA+TGG | + | chr4_4:75875258-75875277 | None:intergenic | 25.0% |
| ! | CTATTAGACCATTCAATAAT+AGG | - | chr4_4:75875318-75875337 | Msa0703850:intron | 25.0% |
| ! | TTGTAATTAATAGTAGCACA+CGG | - | chr4_4:75875509-75875528 | Msa0703850:intron | 25.0% |
| ! | TTCTCTTTGCAGATTAAAAT+TGG | + | chr4_4:75875604-75875623 | None:intergenic | 25.0% |
| !!! | ATTGTTAGCTATTTTTTTCC+AGG | - | chr4_4:75875695-75875714 | Msa0703850:CDS | 25.0% |
| ! | TAAAAAAATAAAACCTGACC+TGG | + | chr4_4:75875797-75875816 | None:intergenic | 25.0% |
| !! | TGTTGACATAAATTTTGTAC+AGG | - | chr4_4:75875877-75875896 | Msa0703850:CDS | 25.0% |
| !! | GTTGACATAAATTTTGTACA+GGG | - | chr4_4:75875878-75875897 | Msa0703850:CDS | 25.0% |
| ! | AAAAAAGAGATATACCTGTT+GGG | + | chr4_4:75875958-75875977 | None:intergenic | 25.0% |
| ! | AAAAAAAGAGATATACCTGT+TGG | + | chr4_4:75875959-75875978 | None:intergenic | 25.0% |
| !!! | CTTTTGTTGTCTTAGTTATA+CGG | - | chr4_4:75876011-75876030 | Msa0703850:intron | 25.0% |
| !! | TTTCCTTTTACAAAACTATG+TGG | - | chr4_4:75876148-75876167 | Msa0703850:intron | 25.0% |
| !! | TTTTCAAACCCAAAAAATGA+GGG | + | chr4_4:75876358-75876377 | None:intergenic | 25.0% |
| !!! | TTTTTCAAACCCAAAAAATG+AGG | + | chr4_4:75876359-75876378 | None:intergenic | 25.0% |
| ! | CAAATTTGCAATATATCCTT+TGG | + | chr4_4:75876433-75876452 | None:intergenic | 25.0% |
| !! | CTAGATATAATTTTACCTCA+AGG | - | chr4_4:75876526-75876545 | Msa0703850:intron | 25.0% |
| ! | ATCTTAATGTACTGTTAGAA+AGG | - | chr4_4:75876556-75876575 | Msa0703850:intron | 25.0% |
| ! | TCTTTAATGGTTTCAATCAA+TGG | - | chr4_4:75876594-75876613 | Msa0703850:intron | 25.0% |
| !! | ATATTGCATCATCTTTTTGT+GGG | + | chr4_4:75876687-75876706 | None:intergenic | 25.0% |
| !! | AATATTGCATCATCTTTTTG+TGG | + | chr4_4:75876688-75876707 | None:intergenic | 25.0% |
| ! | ATATCAACTCAAGATTGAAT+GGG | - | chr4_4:75877123-75877142 | Msa0703850:CDS | 25.0% |
| ! | AAATGTTTCGTACATCAATA+AGG | + | chr4_4:75877317-75877336 | None:intergenic | 25.0% |
| ! | ATATTTACAAGCATGTTACA+TGG | + | chr4_4:75877624-75877643 | None:intergenic | 25.0% |
| !! | CAAAATAGACCATTTTGTAA+TGG | + | chr4_4:75877681-75877700 | None:intergenic | 25.0% |
| ! | GCATACTTAAAAGAAAATGA+AGG | - | chr4_4:75877734-75877753 | Msa0703850:five_prime_UTR | 25.0% |
| TGATAAAGGGATTGTAATGA+CGG | - | chr4_4:75873894-75873913 | Msa0703850:three_prime_UTR | 30.0% | |
| !! | GTTTGTTATGGTCAGAAATA+GGG | + | chr4_4:75874087-75874106 | None:intergenic | 30.0% |
| AATTGAGAACTTACTATGGA+AGG | + | chr4_4:75874121-75874140 | None:intergenic | 30.0% | |
| GGTTAATTGAGAACTTACTA+TGG | + | chr4_4:75874125-75874144 | None:intergenic | 30.0% | |
| TGACCAAATGAATGAGAAAT+TGG | - | chr4_4:75874398-75874417 | Msa0703850:intron | 30.0% | |
| CAACCAATTTCTCATTCATT+TGG | + | chr4_4:75874404-75874423 | None:intergenic | 30.0% | |
| ATTTATCTATCTGCTAGAAC+GGG | - | chr4_4:75874468-75874487 | Msa0703850:CDS | 30.0% | |
| CTATTCGAAATCAACATTGA+AGG | + | chr4_4:75874633-75874652 | None:intergenic | 30.0% | |
| !! | TGTTGATTTCGAATAGTTTG+AGG | - | chr4_4:75874637-75874656 | Msa0703850:CDS | 30.0% |
| !!! | GTACAGGTAGTTTTGTATTA+AGG | - | chr4_4:75874716-75874735 | Msa0703850:intron | 30.0% |
| TATCACTTTCAACTCTTTAC+CGG | - | chr4_4:75874848-75874867 | Msa0703850:intron | 30.0% | |
| ! | ATAAGCTTAATTTTGCTGGA+GGG | + | chr4_4:75874921-75874940 | None:intergenic | 30.0% |
| ! | CAACATAAGCTTAATTTTGC+TGG | + | chr4_4:75874925-75874944 | None:intergenic | 30.0% |
| TTATTTAAATACCCGACATG+AGG | - | chr4_4:75875077-75875096 | Msa0703850:intron | 30.0% | |
| ! | AGAAGCTAAGAAACAACTTT+TGG | - | chr4_4:75875145-75875164 | Msa0703850:intron | 30.0% |
| ! | GAAGCTAAGAAACAACTTTT+GGG | - | chr4_4:75875146-75875165 | Msa0703850:intron | 30.0% |
| !!! | TAAGAAACAACTTTTGGGTT+TGG | - | chr4_4:75875151-75875170 | Msa0703850:intron | 30.0% |
| CCTTGCATAACAATAATATG+TGG | + | chr4_4:75875291-75875310 | None:intergenic | 30.0% | |
| CCACATATTATTGTTATGCA+AGG | - | chr4_4:75875288-75875307 | Msa0703850:intron | 30.0% | |
| TAAATCACTGTAAACCAACA+TGG | + | chr4_4:75875344-75875363 | None:intergenic | 30.0% | |
| CAATGTGATGAACATGAAAT+GGG | + | chr4_4:75875380-75875399 | None:intergenic | 30.0% | |
| TCAATGTGATGAACATGAAA+TGG | + | chr4_4:75875381-75875400 | None:intergenic | 30.0% | |
| !! | TTTGTTTTCACAAACATCTC+TGG | - | chr4_4:75875914-75875933 | Msa0703850:CDS | 30.0% |
| !!! | CATCCACATAGTTTTGTAAA+AGG | + | chr4_4:75876154-75876173 | None:intergenic | 30.0% |
| TTTACAAAACTATGTGGATG+AGG | - | chr4_4:75876154-75876173 | Msa0703850:intron | 30.0% | |
| ! | AACATGATGCTTTTGTAACT+TGG | - | chr4_4:75876300-75876319 | Msa0703850:intron | 30.0% |
| ! | TTTGGGTTTGAAAAATCAGA+AGG | - | chr4_4:75876364-75876383 | Msa0703850:intron | 30.0% |
| ATATTGCAAATTTGCCATTG+AGG | - | chr4_4:75876439-75876458 | Msa0703850:intron | 30.0% | |
| !! | ATTAAGATGAATTAGCCTTG+AGG | + | chr4_4:75876544-75876563 | None:intergenic | 30.0% |
| TAGAAAGAAAAAATCTGGGT+TGG | - | chr4_4:75876842-75876861 | Msa0703850:intron | 30.0% | |
| CATATCAACTCAAGATTGAA+TGG | - | chr4_4:75877122-75877141 | Msa0703850:CDS | 30.0% | |
| TGTATTTCCTTCAAAACATG+AGG | - | chr4_4:75877390-75877409 | Msa0703850:CDS | 30.0% | |
| ACTAAAATTGAGCAAAACAG+AGG | - | chr4_4:75877417-75877436 | Msa0703850:intron | 30.0% | |
| ATGTTACATGGTGATAACAT+GGG | + | chr4_4:75877612-75877631 | None:intergenic | 30.0% | |
| ACATGCTTGTAAATATTTGC+AGG | - | chr4_4:75877628-75877647 | Msa0703850:exon | 30.0% | |
| CATGCTTGTAAATATTTGCA+GGG | - | chr4_4:75877629-75877648 | Msa0703850:exon | 30.0% | |
| AGTTCATACCCATTACAAAA+TGG | - | chr4_4:75877669-75877688 | Msa0703850:five_prime_UTR | 30.0% | |
| TGGGGAAAAAGCAATCTTTA+CGG | - | chr4_4:75874014-75874033 | Msa0703850:three_prime_UTR | 35.0% | |
| !! | GGTTTGTTATGGTCAGAAAT+AGG | + | chr4_4:75874088-75874107 | None:intergenic | 35.0% |
| ! | GGTAGATGATGATGAGTTAA+AGG | - | chr4_4:75874239-75874258 | Msa0703850:CDS | 35.0% |
| GAAAGTGAATCAGAGATTGA+AGG | - | chr4_4:75874261-75874280 | Msa0703850:intron | 35.0% | |
| TGAGAAATTGGTTGTCAAGA+AGG | - | chr4_4:75874410-75874429 | Msa0703850:intron | 35.0% | |
| GAGAAATTGGTTGTCAAGAA+GGG | - | chr4_4:75874411-75874430 | Msa0703850:intron | 35.0% | |
| TCAAGAAGGGATTGTTATCT+AGG | - | chr4_4:75874424-75874443 | Msa0703850:intron | 35.0% | |
| CAAGAAGGGATTGTTATCTA+GGG | - | chr4_4:75874425-75874444 | Msa0703850:intron | 35.0% | |
| AAGAAGGGATTGTTATCTAG+GGG | - | chr4_4:75874426-75874445 | Msa0703850:intron | 35.0% | |
| AGGGATAAATTTGAGTCTGA+TGG | - | chr4_4:75874516-75874535 | Msa0703850:intron | 35.0% | |
| GGGATAAATTTGAGTCTGAT+GGG | - | chr4_4:75874517-75874536 | Msa0703850:intron | 35.0% | |
| TTTGGTTGTTGATCATTTGC+CGG | - | chr4_4:75874596-75874615 | Msa0703850:intron | 35.0% | |
| TGATCATTTGCCGGAAATAT+CGG | - | chr4_4:75874605-75874624 | Msa0703850:intron | 35.0% | |
| ATTGAAGGTTCCGATATTTC+CGG | + | chr4_4:75874618-75874637 | None:intergenic | 35.0% | |
| TTCGAATAGTTTGAGGAATG+CGG | - | chr4_4:75874644-75874663 | Msa0703850:CDS | 35.0% | |
| TTCTTCCCATGAATTAAAGC+CGG | + | chr4_4:75874684-75874703 | None:intergenic | 35.0% | |
| CTTTAATTCATGGGAAGAAC+TGG | - | chr4_4:75874685-75874704 | Msa0703850:CDS | 35.0% | |
| AGAACTGGTTAATGATGTAC+AGG | - | chr4_4:75874700-75874719 | Msa0703850:CDS | 35.0% | |
| TGAAATTGTACCAGCAAACT+AGG | + | chr4_4:75874895-75874914 | None:intergenic | 35.0% | |
| ! | CATAAGCTTAATTTTGCTGG+AGG | + | chr4_4:75874922-75874941 | None:intergenic | 35.0% |
| GATTGATAAATTGAGCTGCA+CGG | - | chr4_4:75875014-75875033 | Msa0703850:intron | 35.0% | |
| ATGAAATATGCACCTCATGT+CGG | + | chr4_4:75875092-75875111 | None:intergenic | 35.0% | |
| ACTGACATATGATTTCTGTC+TGG | - | chr4_4:75875211-75875230 | Msa0703850:intron | 35.0% | |
| CTGACATATGATTTCTGTCT+GGG | - | chr4_4:75875212-75875231 | Msa0703850:intron | 35.0% | |
| CAACATGGCCTATTATTGAA+TGG | + | chr4_4:75875329-75875348 | None:intergenic | 35.0% | |
| CATTCAATAATAGGCCATGT+TGG | - | chr4_4:75875327-75875346 | Msa0703850:intron | 35.0% | |
| ! | ATCACATTGATGACTTCGTA+TGG | - | chr4_4:75875391-75875410 | Msa0703850:intron | 35.0% |
| !! | AGAGGGGTATTTCAAAAGTT+GGG | + | chr4_4:75875442-75875461 | None:intergenic | 35.0% |
| !! | AAGAGGGGTATTTCAAAAGT+TGG | + | chr4_4:75875443-75875462 | None:intergenic | 35.0% |
| ACAATATGCCATCAACAAGA+GGG | + | chr4_4:75875459-75875478 | None:intergenic | 35.0% | |
| TACAATATGCCATCAACAAG+AGG | + | chr4_4:75875460-75875479 | None:intergenic | 35.0% | |
| ACCAATAAGCTTGCAAACAT+GGG | + | chr4_4:75875561-75875580 | None:intergenic | 35.0% | |
| AACCAATAAGCTTGCAAACA+TGG | + | chr4_4:75875562-75875581 | None:intergenic | 35.0% | |
| ! | AACTCAGTCTTGCTGATTAA+AGG | + | chr4_4:75875641-75875660 | None:intergenic | 35.0% |
| !!! | GCTATTTTTTTCCAGGTTGT+TGG | - | chr4_4:75875702-75875721 | Msa0703850:CDS | 35.0% |
| ! | TGGTATTTTCTCTTGTTGGA+TGG | + | chr4_4:75875777-75875796 | None:intergenic | 35.0% |
| ATCCAACAAGAGAAAATACC+AGG | - | chr4_4:75875776-75875795 | Msa0703850:intron | 35.0% | |
| TTTAATGACATGGTATCCCA+CGG | - | chr4_4:75876222-75876241 | Msa0703850:intron | 35.0% | |
| ! | TGCTTTTGTAACTTGGAATC+TGG | - | chr4_4:75876307-75876326 | Msa0703850:intron | 35.0% |
| CATGACAATCCAGAAATGTA+GGG | + | chr4_4:75876392-75876411 | None:intergenic | 35.0% | |
| TCATGACAATCCAGAAATGT+AGG | + | chr4_4:75876393-75876412 | None:intergenic | 35.0% | |
| ATATATCCTTTGGCAAGATG+TGG | + | chr4_4:75876423-75876442 | None:intergenic | 35.0% | |
| !! | GTCTCTAAAGTCAACAGAAA+GGG | + | chr4_4:75876477-75876496 | None:intergenic | 35.0% |
| !! | TGTCTCTAAAGTCAACAGAA+AGG | + | chr4_4:75876478-75876497 | None:intergenic | 35.0% |
| TTGAAACCATTAAAGATGCC+AGG | + | chr4_4:75876590-75876609 | None:intergenic | 35.0% | |
| ! | TTTTTGTGGGCAACTTCAAT+AGG | + | chr4_4:75876674-75876693 | None:intergenic | 35.0% |
| !! | AGAAAAAATCTGGGTTGGTT+TGG | - | chr4_4:75876847-75876866 | Msa0703850:intron | 35.0% |
| TGAATTAACCACAATATCGC+AGG | - | chr4_4:75876908-75876927 | Msa0703850:intron | 35.0% | |
| !! | AGGTCATTTTGCGCTTTATT+TGG | - | chr4_4:75876985-75877004 | Msa0703850:CDS | 35.0% |
| !!! | TCATTTTGCGCTTTATTTGG+AGG | - | chr4_4:75876988-75877007 | Msa0703850:CDS | 35.0% |
| !!! | CATTTTGCGCTTTATTTGGA+GGG | - | chr4_4:75876989-75877008 | Msa0703850:CDS | 35.0% |
| AAGATTGAATGGGTCAAGTT+CGG | - | chr4_4:75877133-75877152 | Msa0703850:CDS | 35.0% | |
| ACAAGGATTGCCATAAGTTT+CGG | + | chr4_4:75877162-75877181 | None:intergenic | 35.0% | |
| ! | TTCTCCAGAATTTCAAGTGA+AGG | - | chr4_4:75877190-75877209 | Msa0703850:CDS | 35.0% |
| ACTTCCTTCACTTGAAATTC+TGG | + | chr4_4:75877197-75877216 | None:intergenic | 35.0% | |
| ! | ATTTCAAGTGAAGGAAGTAG+AGG | - | chr4_4:75877199-75877218 | Msa0703850:CDS | 35.0% |
| ATTGATAAAAAGGGGGGAAA+AGG | + | chr4_4:75877270-75877289 | None:intergenic | 35.0% | |
| GAACAGATTGATAAAAAGGG+GGG | + | chr4_4:75877276-75877295 | None:intergenic | 35.0% | |
| GGAACAGATTGATAAAAAGG+GGG | + | chr4_4:75877277-75877296 | None:intergenic | 35.0% | |
| CGGAACAGATTGATAAAAAG+GGG | + | chr4_4:75877278-75877297 | None:intergenic | 35.0% | |
| CCGGAACAGATTGATAAAAA+GGG | + | chr4_4:75877279-75877298 | None:intergenic | 35.0% | |
| ! | CCCTTTTTATCAATCTGTTC+CGG | - | chr4_4:75877276-75877295 | Msa0703850:CDS | 35.0% |
| TGTTTCGTACATCAATAAGG+AGG | + | chr4_4:75877314-75877333 | None:intergenic | 35.0% | |
| !! | AGTATCTCCTCATGTTTTGA+AGG | + | chr4_4:75877400-75877419 | None:intergenic | 35.0% |
| AATTGCAATTTCTGCTAGCA+AGG | - | chr4_4:75877540-75877559 | Msa0703850:CDS | 35.0% | |
| ATTGCAATTTCTGCTAGCAA+GGG | - | chr4_4:75877541-75877560 | Msa0703850:CDS | 35.0% | |
| CATGTTACATGGTGATAACA+TGG | + | chr4_4:75877613-75877632 | None:intergenic | 35.0% | |
| AAATGAGTCACAAAATGACG+TGG | + | chr4_4:75877764-75877783 | None:intergenic | 35.0% | |
| TAATGACGGTGAGGGAATAT+AGG | - | chr4_4:75873908-75873927 | Msa0703850:three_prime_UTR | 40.0% | |
| ! | CAAAGCAGTTCACCTTGTTT+CGG | - | chr4_4:75874039-75874058 | Msa0703850:three_prime_UTR | 40.0% |
| AATAGGGTTGAGAAGAACAG+TGG | + | chr4_4:75874071-75874090 | None:intergenic | 40.0% | |
| TGAGAACTTACTATGGAAGG+AGG | + | chr4_4:75874118-75874137 | None:intergenic | 40.0% | |
| !! | TTCATTTTTGTCGTCCTCGT+CGG | - | chr4_4:75874317-75874336 | Msa0703850:intron | 40.0% |
| !! | ATTATCTCTAGAATCCGACG+AGG | + | chr4_4:75874334-75874353 | None:intergenic | 40.0% |
| TCATTCATTTGGTCATCACC+AGG | + | chr4_4:75874393-75874412 | None:intergenic | 40.0% | |
| ! | AAATTTGAGTCTGATGGGTG+TGG | - | chr4_4:75874522-75874541 | Msa0703850:intron | 40.0% |
| ACACTAGGTACCTCTTTCAA+CGG | + | chr4_4:75874573-75874592 | None:intergenic | 40.0% | |
| GGCAAATGATCAACAACCAA+AGG | + | chr4_4:75874597-75874616 | None:intergenic | 40.0% | |
| ! | CACTTCCGGCTTTAATTCAT+GGG | - | chr4_4:75874676-75874695 | Msa0703850:CDS | 40.0% |
| TTTGCAGCACATGGAAACAT+GGG | - | chr4_4:75874824-75874843 | Msa0703850:intron | 40.0% | |
| ! | TTTACCGGAGAAGTATGCTT+TGG | - | chr4_4:75874863-75874882 | Msa0703850:intron | 40.0% |
| TGAAATATGCACCTCATGTC+GGG | + | chr4_4:75875091-75875110 | None:intergenic | 40.0% | |
| !!! | GAAACAACTTTTGGGTTTGG+TGG | - | chr4_4:75875154-75875173 | Msa0703850:intron | 40.0% |
| GATGACTTCGTATGGATGAA+TGG | - | chr4_4:75875399-75875418 | Msa0703850:intron | 40.0% | |
| TGAAATACCCCTCTTGTTGA+TGG | - | chr4_4:75875448-75875467 | Msa0703850:intron | 40.0% | |
| CAATATGCCATCAACAAGAG+GGG | + | chr4_4:75875458-75875477 | None:intergenic | 40.0% | |
| TAGTAGCACACGGAGTTTAA+CGG | - | chr4_4:75875519-75875538 | Msa0703850:intron | 40.0% | |
| TCCCATGTTTGCAAGCTTAT+TGG | - | chr4_4:75875557-75875576 | Msa0703850:intron | 40.0% | |
| GGTTAATAAGCTCATGCTGT+TGG | - | chr4_4:75875578-75875597 | Msa0703850:intron | 40.0% | |
| GTTCTACACTCTACATTCAG+TGG | - | chr4_4:75875658-75875677 | Msa0703850:intron | 40.0% | |
| TACACTCTACATTCAGTGGT+TGG | - | chr4_4:75875662-75875681 | Msa0703850:intron | 40.0% | |
| TCTCTTGTTGGATGGTTGAA+GGG | + | chr4_4:75875769-75875788 | None:intergenic | 40.0% | |
| TTCTCTTGTTGGATGGTTGA+AGG | + | chr4_4:75875770-75875789 | None:intergenic | 40.0% | |
| ! | GACCTGGTATTTTCTCTTGT+TGG | + | chr4_4:75875781-75875800 | None:intergenic | 40.0% |
| ACAAGAGAAAATACCAGGTC+AGG | - | chr4_4:75875781-75875800 | Msa0703850:intron | 40.0% | |
| TTAATGACATGGTATCCCAC+GGG | - | chr4_4:75876223-75876242 | Msa0703850:intron | 40.0% | |
| ATTGTACCACATCTTGCCAA+AGG | - | chr4_4:75876414-75876433 | Msa0703850:intron | 40.0% | |
| GGAAATCAAGCTTTCCTCAA+TGG | + | chr4_4:75876456-75876475 | None:intergenic | 40.0% | |
| GTTAGAAAGGATGAGTTTCC+TGG | - | chr4_4:75876569-75876588 | Msa0703850:intron | 40.0% | |
| GAGTTTCCTGGCATCTTTAA+TGG | - | chr4_4:75876581-75876600 | Msa0703850:intron | 40.0% | |
| TGGTGCAAAGTGTGAAGTAA+CGG | + | chr4_4:75876940-75876959 | None:intergenic | 40.0% | |
| AGTTCGGTTTCCGAAACTTA+TGG | - | chr4_4:75877149-75877168 | Msa0703850:CDS | 40.0% | |
| TCTGGAGAATGTGCTAAACA+AGG | + | chr4_4:75877179-75877198 | None:intergenic | 40.0% | |
| TAAAAAGGGGGGAAAAGGTT+GGG | + | chr4_4:75877265-75877284 | None:intergenic | 40.0% | |
| ATAAAAAGGGGGGAAAAGGT+TGG | + | chr4_4:75877266-75877285 | None:intergenic | 40.0% | |
| GCCGGAACAGATTGATAAAA+AGG | + | chr4_4:75877280-75877299 | None:intergenic | 40.0% | |
| AAGGAGGTAAACAAATGAGC+CGG | + | chr4_4:75877298-75877317 | None:intergenic | 40.0% | |
| TCAGTAAAATGCGAACTGCA+AGG | + | chr4_4:75877498-75877517 | None:intergenic | 40.0% | |
| TTACATGGTGATAACATGGG+TGG | + | chr4_4:75877609-75877628 | None:intergenic | 40.0% | |
| !! | GGTGTTGATGATTATGCTGC+CGG | + | chr4_4:75873828-75873847 | None:intergenic | 45.0% |
| AAGGGATTGTAATGACGGTG+AGG | - | chr4_4:75873899-75873918 | Msa0703850:three_prime_UTR | 45.0% | |
| AGGGATTGTAATGACGGTGA+GGG | - | chr4_4:75873900-75873919 | Msa0703850:three_prime_UTR | 45.0% | |
| GATAAGATTGTGACTGCAGC+TGG | - | chr4_4:75874366-75874385 | Msa0703850:intron | 45.0% | |
| TATCTATCTGCTAGAACGGG+TGG | - | chr4_4:75874471-75874490 | Msa0703850:CDS | 45.0% | |
| ! | GGTGGATTTCCAACACAAGA+TGG | - | chr4_4:75874489-75874508 | Msa0703850:CDS | 45.0% |
| TTCCAACACAAGATGGCGAA+AGG | - | chr4_4:75874496-75874515 | Msa0703850:intron | 45.0% | |
| TCCAACACAAGATGGCGAAA+GGG | - | chr4_4:75874497-75874516 | Msa0703850:intron | 45.0% | |
| ! | TTTTCAACCGCCGTTGAAAG+AGG | - | chr4_4:75874560-75874579 | Msa0703850:intron | 45.0% |
| ! | TCAACAACCAAAGGCACACT+AGG | + | chr4_4:75874588-75874607 | None:intergenic | 45.0% |
| TGCGGTTTATGATGCACTTC+CGG | - | chr4_4:75874662-75874681 | Msa0703850:CDS | 45.0% | |
| ! | GCACTTCCGGCTTTAATTCA+TGG | - | chr4_4:75874675-75874694 | Msa0703850:CDS | 45.0% |
| TGTGGTTTCTTTGCAGCACA+TGG | - | chr4_4:75874815-75874834 | Msa0703850:intron | 45.0% | |
| CTTTGCAGCACATGGAAACA+TGG | - | chr4_4:75874823-75874842 | Msa0703850:intron | 45.0% | |
| CTGCACGGTAGATTAGAGAT+AGG | - | chr4_4:75875029-75875048 | Msa0703850:intron | 45.0% | |
| !!! | ACAACTTTTGGGTTTGGTGG+TGG | - | chr4_4:75875157-75875176 | Msa0703850:intron | 45.0% |
| !!! | CAACTTTTGGGTTTGGTGGT+GGG | - | chr4_4:75875158-75875177 | Msa0703850:intron | 45.0% |
| AGTAGCACACGGAGTTTAAC+GGG | - | chr4_4:75875520-75875539 | Msa0703850:intron | 45.0% | |
| ! | CACCAAACACTGCTCCTTTT+CGG | + | chr4_4:75875731-75875750 | None:intergenic | 45.0% |
| CTCTTGTTGGATGGTTGAAG+GGG | + | chr4_4:75875768-75875787 | None:intergenic | 45.0% | |
| ATGTGCACATCATAACCCGT+GGG | + | chr4_4:75876241-75876260 | None:intergenic | 45.0% | |
| AATGTGCACATCATAACCCG+TGG | + | chr4_4:75876242-75876261 | None:intergenic | 45.0% | |
| AACCCAAAAAATGAGGGCGA+CGG | + | chr4_4:75876352-75876371 | None:intergenic | 45.0% | |
| !! | TATCTCTGAGATTCAGCACG+AGG | - | chr4_4:75876732-75876751 | Msa0703850:intron | 45.0% |
| GGTTTACTCCTGCGATATTG+TGG | + | chr4_4:75876919-75876938 | None:intergenic | 45.0% | |
| !! | ACCACTGACTTTCTAGCGAT+TGG | - | chr4_4:75876956-75876975 | Msa0703850:CDS | 45.0% |
| ACCAATCGCTAGAAAGTCAG+TGG | + | chr4_4:75876960-75876979 | None:intergenic | 45.0% | |
| ! | ACTGACTTTCTAGCGATTGG+TGG | - | chr4_4:75876959-75876978 | Msa0703850:CDS | 45.0% |
| ! | CTGACTTTCTAGCGATTGGT+GGG | - | chr4_4:75876960-75876979 | Msa0703850:CDS | 45.0% |
| ! | TGACTTTCTAGCGATTGGTG+GGG | - | chr4_4:75876961-75876980 | Msa0703850:CDS | 45.0% |
| GTTCATGAGTCTGTGAGTGA+GGG | + | chr4_4:75877239-75877258 | None:intergenic | 45.0% | |
| AAAAAGGGGGGAAAAGGTTG+GGG | + | chr4_4:75877264-75877283 | None:intergenic | 45.0% | |
| TCTTTCCTCCATGCAGTTGT+GGG | - | chr4_4:75877363-75877382 | Msa0703850:CDS | 45.0% | |
| !!! | TTTAAATTTTAAATGAAATA+TGG | - | chr4_4:75876621-75876640 | Msa0703850:intron | 5.0% |
| CAGTGGTGAGATCCGAAACA+AGG | + | chr4_4:75874054-75874073 | None:intergenic | 50.0% | |
| !! | GAGGACGAGAGGGTTTGTTA+TGG | + | chr4_4:75874099-75874118 | None:intergenic | 50.0% |
| ACTATGGAAGGAGGACGAGA+GGG | + | chr4_4:75874109-75874128 | None:intergenic | 50.0% | |
| TACTATGGAAGGAGGACGAG+AGG | + | chr4_4:75874110-75874129 | None:intergenic | 50.0% | |
| GCAGTAAACGACGACGTATC+AGG | + | chr4_4:75874288-75874307 | None:intergenic | 50.0% | |
| TCCCTTTCGCCATCTTGTGT+TGG | + | chr4_4:75874501-75874520 | None:intergenic | 50.0% | |
| CTAGGTACCTCTTTCAACGG+CGG | + | chr4_4:75874570-75874589 | None:intergenic | 50.0% | |
| !! | AGAGGTACCTAGTGTGCCTT+TGG | - | chr4_4:75874578-75874597 | Msa0703850:intron | 50.0% |
| CAGGCCAAAGCATACTTCTC+CGG | + | chr4_4:75874870-75874889 | None:intergenic | 50.0% | |
| TGTACCAGCAAACTAGGTCC+AGG | + | chr4_4:75874889-75874908 | None:intergenic | 50.0% | |
| AACATGGGACTTCAACACGC+AGG | + | chr4_4:75875546-75875565 | None:intergenic | 50.0% | |
| ! | CTTTTCGGTCTCCAACAACC+TGG | + | chr4_4:75875716-75875735 | None:intergenic | 50.0% |
| CAGGTTGTTGGAGACCGAAA+AGG | - | chr4_4:75875714-75875733 | Msa0703850:CDS | 50.0% | |
| GACCGAAAAGGAGCAGTGTT+TGG | - | chr4_4:75875726-75875745 | Msa0703850:CDS | 50.0% | |
| CGAAAAGGAGCAGTGTTTGG+TGG | - | chr4_4:75875729-75875748 | Msa0703850:CDS | 50.0% | |
| AAAAAATGAGGGCGACGGGT+GGG | + | chr4_4:75876347-75876366 | None:intergenic | 50.0% | |
| !!! | ACCCGTCGCCCTCATTTTTT+GGG | - | chr4_4:75876347-75876366 | Msa0703850:intron | 50.0% |
| ACCCAAAAAATGAGGGCGAC+GGG | + | chr4_4:75876351-75876370 | None:intergenic | 50.0% | |
| CAGAAGGCTCCCTACATTTC+TGG | - | chr4_4:75876380-75876399 | Msa0703850:intron | 50.0% | |
| ! | GACTTTCTAGCGATTGGTGG+GGG | - | chr4_4:75876962-75876981 | Msa0703850:CDS | 50.0% |
| GGTTCATGAGTCTGTGAGTG+AGG | + | chr4_4:75877240-75877259 | None:intergenic | 50.0% | |
| CTCTTTCCTCCATGCAGTTG+TGG | - | chr4_4:75877362-75877381 | Msa0703850:CDS | 50.0% | |
| CTTTCCTCCATGCAGTTGTG+GGG | - | chr4_4:75877364-75877383 | Msa0703850:CDS | 50.0% | |
| TACAAAGCCCCACAACTGCA+TGG | + | chr4_4:75877374-75877393 | None:intergenic | 50.0% | |
| !! | TTGAGCAAAACAGAGGCACC+TGG | - | chr4_4:75877424-75877443 | Msa0703850:intron | 50.0% |
| !! | TGAGCAAAACAGAGGCACCT+GGG | - | chr4_4:75877425-75877444 | Msa0703850:intron | 50.0% |
| ATTTACCAGCGAGAGATCCC+AGG | + | chr4_4:75877445-75877464 | None:intergenic | 50.0% | |
| ATTGTGACTGCAGCTGGACC+TGG | - | chr4_4:75874372-75874391 | Msa0703850:intron | 55.0% | |
| ! | TGAGTCTGATGGGTGTGGTG+TGG | - | chr4_4:75874527-75874546 | Msa0703850:intron | 55.0% |
| ! | CGGAGAAGTATGCTTTGGCC+TGG | - | chr4_4:75874868-75874887 | Msa0703850:intron | 55.0% |
| ! | TTGGCCTGGACCTAGTTTGC+TGG | - | chr4_4:75874882-75874901 | Msa0703850:intron | 55.0% |
| ! | AGGAGCAGTGTTTGGTGGCT+TGG | - | chr4_4:75875734-75875753 | Msa0703850:intron | 55.0% |
| CCTGTTGGGCGATATACGAC+AGG | + | chr4_4:75875944-75875963 | None:intergenic | 55.0% | |
| CCTGTCGTATATCGCCCAAC+AGG | - | chr4_4:75875941-75875960 | Msa0703850:intron | 55.0% | |
| CAAAAAATGAGGGCGACGGG+TGG | + | chr4_4:75876348-75876367 | None:intergenic | 55.0% | |
| !!! | CACCCGTCGCCCTCATTTTT+TGG | - | chr4_4:75876346-75876365 | Msa0703850:intron | 55.0% |
| ! | TTTCTAGCGATTGGTGGGGG+AGG | - | chr4_4:75876965-75876984 | Msa0703850:CDS | 55.0% |
| AAAGCCCCACAACTGCATGG+AGG | + | chr4_4:75877371-75877390 | None:intergenic | 55.0% | |
| AAGGGGGGAAAAGGTTGGGG+AGG | + | chr4_4:75877261-75877280 | None:intergenic | 60.0% | |
| AGGCACCTGGGATCTCTCGC+TGG | - | chr4_4:75877437-75877456 | Msa0703850:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 75873813 | 75877837 | 75873813 | ID=Msa0703850;Name=Msa0703850 |
| chr4_4 | mRNA | 75873813 | 75877837 | 75873813 | ID=Msa0703850-mRNA-1;Parent=Msa0703850;Name=Msa0703850-mRNA-1;_AED=0.16;_eAED=0.16;_QI=200|1|1|1|1|1|8|375|359 |
| chr4_4 | exon | 75873813 | 75874271 | 75873813 | ID=Msa0703850-mRNA-1:exon:23910;Parent=Msa0703850-mRNA-1 |
| chr4_4 | exon | 75874430 | 75874514 | 75874430 | ID=Msa0703850-mRNA-1:exon:23909;Parent=Msa0703850-mRNA-1 |
| chr4_4 | exon | 75874633 | 75874720 | 75874633 | ID=Msa0703850-mRNA-1:exon:23908;Parent=Msa0703850-mRNA-1 |
| chr4_4 | exon | 75875688 | 75875751 | 75875688 | ID=Msa0703850-mRNA-1:exon:23907;Parent=Msa0703850-mRNA-1 |
| chr4_4 | exon | 75875853 | 75875933 | 75875853 | ID=Msa0703850-mRNA-1:exon:23906;Parent=Msa0703850-mRNA-1 |
| chr4_4 | exon | 75876747 | 75876819 | 75876747 | ID=Msa0703850-mRNA-1:exon:23905;Parent=Msa0703850-mRNA-1 |
| chr4_4 | exon | 75876929 | 75877419 | 75876929 | ID=Msa0703850-mRNA-1:exon:23904;Parent=Msa0703850-mRNA-1 |
| chr4_4 | exon | 75877524 | 75877837 | 75877524 | ID=Msa0703850-mRNA-1:exon:23903;Parent=Msa0703850-mRNA-1 |
| chr4_4 | five_prime_UTR | 75877638 | 75877837 | 75877638 | ID=Msa0703850-mRNA-1:five_prime_utr;Parent=Msa0703850-mRNA-1 |
| chr4_4 | CDS | 75877524 | 75877637 | 75877524 | ID=Msa0703850-mRNA-1:cds;Parent=Msa0703850-mRNA-1 |
| chr4_4 | CDS | 75876929 | 75877419 | 75876929 | ID=Msa0703850-mRNA-1:cds;Parent=Msa0703850-mRNA-1 |
| chr4_4 | CDS | 75876747 | 75876819 | 75876747 | ID=Msa0703850-mRNA-1:cds;Parent=Msa0703850-mRNA-1 |
| chr4_4 | CDS | 75875853 | 75875933 | 75875853 | ID=Msa0703850-mRNA-1:cds;Parent=Msa0703850-mRNA-1 |
| chr4_4 | CDS | 75875688 | 75875751 | 75875688 | ID=Msa0703850-mRNA-1:cds;Parent=Msa0703850-mRNA-1 |
| chr4_4 | CDS | 75874633 | 75874720 | 75874633 | ID=Msa0703850-mRNA-1:cds;Parent=Msa0703850-mRNA-1 |
| chr4_4 | CDS | 75874430 | 75874514 | 75874430 | ID=Msa0703850-mRNA-1:cds;Parent=Msa0703850-mRNA-1 |
| chr4_4 | CDS | 75874188 | 75874271 | 75874188 | ID=Msa0703850-mRNA-1:cds;Parent=Msa0703850-mRNA-1 |
| chr4_4 | three_prime_UTR | 75873813 | 75874187 | 75873813 | ID=Msa0703850-mRNA-1:three_prime_utr;Parent=Msa0703850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
