AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1433350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1433350 MtrunA17_Chr8g0382261 93.872 359 19 2 1 359 1 356 0.0 653
Msa1433350 MtrunA17_Chr3g0124001 58.182 385 122 12 1 359 1 372 5.08e-137 394
Msa1433350 MtrunA17_Chr1g0186161 55.814 172 76 0 166 337 137 308 1.10e-60 197
Msa1433350 MtrunA17_Chr1g0168381 59.322 59 24 0 275 333 12 70 1.26e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1433350 AT4G39870.2 48.762 404 151 8 1 359 1 393 5.10e-119 350
Msa1433350 AT4G39870.1 48.762 404 151 8 1 359 1 393 5.10e-119 350
Msa1433350 AT2G05590.2 55.000 180 81 0 163 342 122 301 2.24e-68 217
Msa1433350 AT2G05590.1 54.930 142 64 0 163 304 122 263 4.57e-52 174
Msa1433350 AT5G06260.1 29.114 158 99 5 197 344 238 392 7.66e-14 72.8
Msa1433350 AT5G06260.2 29.114 158 99 5 197 344 174 328 7.68e-14 72.4
Msa1433350 AT5G06260.3 29.114 158 99 5 197 344 149 303 1.06e-13 71.6

Find 119 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCCTTCACTTGAAATTC+TGG 0.230950 tig0027269:+4498 None:intergenic
GGTTTGTTATGGTCAGAAAT+AGG 0.233665 tig0027269:+7606 None:intergenic
GGTAGATGATGATGAGTTAA+AGG 0.279770 tig0027269:-7452 Msa1433350:CDS
TAGATTATGAATTATGATAA+AGG 0.297309 tig0027269:-7811 Msa1433350:five_prime_UTR
AGTTCGGTTTCCGAAACTTA+TGG 0.320071 tig0027269:-4543 Msa1433350:CDS
TATCACTTTCAACTCTTTAC+CGG 0.326685 tig0027269:-6843 Msa1433350:CDS
ACATGCTTGTAAATATTTGC+AGG 0.331389 tig0027269:-4064 Msa1433350:three_prime_UTR
CAACCAATTTCTCATTCATT+TGG 0.340463 tig0027269:+7290 None:intergenic
TCAAGAAGGGATTGTTATCT+AGG 0.341466 tig0027269:-7267 Msa1433350:CDS
TTCTCTTGTTGGATGGTTGA+AGG 0.342424 tig0027269:+5924 None:intergenic
GTTTGTTATGGTCAGAAATA+GGG 0.345242 tig0027269:+7607 None:intergenic
TTGGCCTGGACCTAGTTTGC+TGG 0.351025 tig0027269:-6809 Msa1433350:intron
TGATCATTTGCCGGAAATAT+CGG 0.357645 tig0027269:-7086 Msa1433350:CDS
CAAAGCAGTTCACCTTGTTT+CGG 0.358183 tig0027269:-7652 Msa1433350:CDS
GCACTTCCAGCTTTAATTCA+TGG 0.362283 tig0027269:-7016 Msa1433350:CDS
ACAAGGATTGCCATAAGTTT+CGG 0.368495 tig0027269:+4533 None:intergenic
TGACCAAATGAATGAGAAAT+TGG 0.373689 tig0027269:-7293 Msa1433350:CDS
ATTGAAGGTTCCGATATTTC+CGG 0.382091 tig0027269:+7076 None:intergenic
CATATCAACTCAAGATTGAA+TGG 0.382180 tig0027269:-4570 Msa1433350:intron
AGATTATGAATTATGATAAA+GGG 0.382482 tig0027269:-7810 Msa1433350:five_prime_UTR
CTTTAATTCATGGGAAGAAC+TGG 0.393766 tig0027269:-7006 Msa1433350:CDS
AGGAGCAGTGTTTGGTGGCT+TGG 0.413328 tig0027269:-5957 Msa1433350:CDS
TAATGACGGTGAGGGAATAT+AGG 0.417137 tig0027269:-7783 Msa1433350:five_prime_UTR
AAGTTTCGTGCCTCAACAAC+CGG 0.428754 tig0027269:-7903 Msa1433350:five_prime_UTR
TTTGGTTGTTGATCATTTGC+CGG 0.432855 tig0027269:-7095 Msa1433350:CDS
GACCGAAAAGGAGCAGTGTT+TGG 0.438263 tig0027269:-5965 Msa1433350:CDS
CTTTGCAGCACATGGAAACA+TGG 0.442796 tig0027269:-6868 Msa1433350:intron
GCAGTAAACGACGACGTATC+AGG 0.445057 tig0027269:+7406 None:intergenic
ACCACTGACTTTCTAGCGAT+TGG 0.446127 tig0027269:-4736 Msa1433350:CDS
TGTTGATTTCGAATAGTTTG+AGG 0.450543 tig0027269:-7054 Msa1433350:CDS
AAGATTGAATGGGTCAAGTT+CGG 0.451165 tig0027269:-4559 Msa1433350:CDS
TGAGAAATTGGTTGTCAAGA+AGG 0.453693 tig0027269:-7281 Msa1433350:CDS
TTTACCGGAGAAGTATGCTT+TGG 0.460274 tig0027269:-6828 Msa1433350:CDS
CACTTCCAGCTTTAATTCAT+GGG 0.462095 tig0027269:-7015 Msa1433350:CDS
CAGGTTGTTGGAGACCGAAA+AGG 0.462680 tig0027269:-5977 Msa1433350:CDS
TTGCATGTTCAGTGTCAAAC+TGG 0.464030 tig0027269:+8022 None:intergenic
CTGAGTCATCATCGGTCACT+CGG 0.465381 tig0027269:+7962 None:intergenic
AATTATTGTTTAGGAAGAAA+AGG 0.466326 tig0027269:-7473 Msa1433350:intron
TGAAATTGTACCAGCAAACT+AGG 0.469728 tig0027269:+6799 None:intergenic
CGGAGAAGTATGCTTTGGCC+TGG 0.471135 tig0027269:-6823 Msa1433350:CDS
AGTTCATACCCATTACAAAA+TGG 0.475573 tig0027269:-4023 Msa1433350:three_prime_UTR
AGAGGTACCTAGTGTGCCTT+TGG 0.478962 tig0027269:-7113 Msa1433350:CDS
CCTGTCGTATATCGCCCAAC+AGG 0.479602 tig0027269:-5751 Msa1433350:intron
GATAAGATTGTGACTGCAGC+TGG 0.481152 tig0027269:-7325 Msa1433350:CDS
CAAGAAGGGATTGTTATCTA+GGG 0.481467 tig0027269:-7266 Msa1433350:CDS
TTCTTCCCATGAATTAAAGC+TGG 0.484728 tig0027269:+7010 None:intergenic
ACTGACTTTCTAGCGATTGG+TGG 0.489834 tig0027269:-4733 Msa1433350:CDS
TCTCTTGTTGGATGGTTGAA+GGG 0.490005 tig0027269:+5925 None:intergenic
AGGGATAAATTTGAGTCTGA+TGG 0.490332 tig0027269:-7175 Msa1433350:CDS
CTATTCGAAATCAACATTGA+AGG 0.490666 tig0027269:+7061 None:intergenic
GAGAAATTGGTTGTCAAGAA+GGG 0.491672 tig0027269:-7280 Msa1433350:CDS
TCCCTTTCGCCATCTTGTGT+TGG 0.498135 tig0027269:+7193 None:intergenic
GACTTTCTAGCGATTGGTGG+GGG 0.501174 tig0027269:-4730 Msa1433350:CDS
ATTTATCTATCTGCTAGAAC+GGG 0.507739 tig0027269:-7223 Msa1433350:CDS
GAGGACGAGAGGGTTTGTTA+TGG 0.508533 tig0027269:+7595 None:intergenic
TTCTCCAGAATTTCAAGTGA+AGG 0.510211 tig0027269:-4502 Msa1433350:CDS
TATTTATCTATCTGCTAGAA+CGG 0.513283 tig0027269:-7224 Msa1433350:CDS
TTGAGCAAAACAGAGGCACC+TGG 0.517709 tig0027269:-4268 Msa1433350:CDS
CTTTCCTCCATGCAGTTGTG+GGG 0.519234 tig0027269:-4328 Msa1433350:intron
AGAACTGGTTAATGATGTAC+AGG 0.519562 tig0027269:-6991 Msa1433350:intron
AGGCACCTGGGATCTCTCGC+TGG 0.521785 tig0027269:-4255 Msa1433350:CDS
GGTGTTGATGATTATGCTGC+CGG 0.521825 tig0027269:+7866 None:intergenic
AATTGCAATTTCTGCTAGCA+AGG 0.522215 tig0027269:-4152 Msa1433350:three_prime_UTR
CTCTTGTTGGATGGTTGAAG+GGG 0.527238 tig0027269:+5926 None:intergenic
CTGACTTTCTAGCGATTGGT+GGG 0.531876 tig0027269:-4732 Msa1433350:CDS
TCATTCATTTGGTCATCACC+AGG 0.532498 tig0027269:+7301 None:intergenic
TGATAAAGGGATTGTAATGA+CGG 0.536835 tig0027269:-7797 Msa1433350:five_prime_UTR
GGGATAAATTTGAGTCTGAT+GGG 0.537744 tig0027269:-7174 Msa1433350:CDS
CGAAAAGGAGCAGTGTTTGG+TGG 0.540629 tig0027269:-5962 Msa1433350:CDS
ACCGGAAAACGCTTCTACAC+CGG 0.545063 tig0027269:-7885 Msa1433350:five_prime_UTR
ATATTTACAAGCATGTTACA+TGG 0.546363 tig0027269:+4071 None:intergenic
AATTGAGAACTTACTATGGA+AGG 0.547869 tig0027269:+7573 None:intergenic
ATATCAACTCAAGATTGAAT+GGG 0.549497 tig0027269:-4569 Msa1433350:intron
TGTATTTCCTTCAAAACATG+AGG 0.552112 tig0027269:-4302 Msa1433350:CDS
CAGGCCAAAGCATACTTCTC+CGG 0.555164 tig0027269:+6824 None:intergenic
GAAAGTGAATCAGAGATTGA+AGG 0.560111 tig0027269:-7430 Msa1433350:CDS
ATTGTGACTGCAGCTGGACC+TGG 0.567414 tig0027269:-7319 Msa1433350:CDS
TTCCAACACAAGATGGCGAA+AGG 0.567792 tig0027269:-7195 Msa1433350:CDS
CATGTTACATGGTGATAACA+TGG 0.568306 tig0027269:+4082 None:intergenic
TGTACCAGCAAACTAGGTCC+AGG 0.570453 tig0027269:+6805 None:intergenic
TCAACAACCAAAGGCACACT+AGG 0.571234 tig0027269:+7106 None:intergenic
CATGCTTGTAAATATTTGCA+GGG 0.571962 tig0027269:-4063 Msa1433350:three_prime_UTR
TCCAACACAAGATGGCGAAA+GGG 0.576200 tig0027269:-7194 Msa1433350:CDS
GGTGGATTTCCAACACAAGA+TGG 0.577445 tig0027269:-7202 Msa1433350:CDS
TTTGCAGCACATGGAAACAT+GGG 0.579278 tig0027269:-6867 Msa1433350:intron
ATTTCAAGTGAAGGAAGTAG+AGG 0.579766 tig0027269:-4493 Msa1433350:intron
TTCGAATAGTTTGAGGAATG+CGG 0.583662 tig0027269:-7047 Msa1433350:CDS
TATCTATCTGCTAGAACGGG+TGG 0.584754 tig0027269:-7220 Msa1433350:CDS
AGGGATTGTAATGACGGTGA+GGG 0.585410 tig0027269:-7791 Msa1433350:five_prime_UTR
GCATACTTAAAAGAAAATGA+AGG 0.587044 tig0027269:-3958 Msa1433350:three_prime_UTR
ATCCAACAAGAGAAAATACC+AGG 0.596747 tig0027269:-5915 Msa1433350:intron
AAGGGATTGTAATGACGGTG+AGG 0.597285 tig0027269:-7792 Msa1433350:five_prime_UTR
CAGTGGTGAGATCCGAAACA+AGG 0.598925 tig0027269:+7640 None:intergenic
TGGTGCAAAGTGTGAAGTAA+CGG 0.599281 tig0027269:+4755 None:intergenic
ATTTACCAGCGAGAGATCCC+AGG 0.600370 tig0027269:+4250 None:intergenic
TGACTTTCTAGCGATTGGTG+GGG 0.600382 tig0027269:-4731 Msa1433350:CDS
ATTGCAATTTCTGCTAGCAA+GGG 0.601315 tig0027269:-4151 Msa1433350:three_prime_UTR
CCTGTTGGGCGATATACGAC+AGG 0.602267 tig0027269:+5751 None:intergenic
AAATTTGAGTCTGATGGGTG+TGG 0.614316 tig0027269:-7169 Msa1433350:CDS
GGCAAATGATCAACAACCAA+AGG 0.615389 tig0027269:+7097 None:intergenic
TGAGTCTGATGGGTGTGGTG+TGG 0.621546 tig0027269:-7164 Msa1433350:CDS
TGAGCAAAACAGAGGCACCT+GGG 0.621947 tig0027269:-4267 Msa1433350:CDS
TCAGTAAAATGCGAACTGCA+AGG 0.623392 tig0027269:+4197 None:intergenic
TCTGGAGAATGTGCTAAACA+AGG 0.634055 tig0027269:+4516 None:intergenic
ACTATGGAAGGAGGACGAGA+GGG 0.634975 tig0027269:+7585 None:intergenic
TACTATGGAAGGAGGACGAG+AGG 0.638442 tig0027269:+7584 None:intergenic
ACTAAAATTGAGCAAAACAG+AGG 0.638548 tig0027269:-4275 Msa1433350:CDS
ACTGAACATGCAAACAAACA+AGG 0.640237 tig0027269:-8012 Msa1433350:five_prime_UTR
ACCAATCGCTAGAAAGTCAG+TGG 0.645879 tig0027269:+4735 None:intergenic
AAGAAGGGATTGTTATCTAG+GGG 0.664052 tig0027269:-7265 Msa1433350:CDS
TGAGAACTTACTATGGAAGG+AGG 0.668946 tig0027269:+7576 None:intergenic
CTAGGTACCTCTTTCAACGG+CGG 0.669452 tig0027269:+7124 None:intergenic
AATAGGGTTGAGAAGAACAG+TGG 0.691115 tig0027269:+7623 None:intergenic
ACACTAGGTACCTCTTTCAA+CGG 0.691173 tig0027269:+7121 None:intergenic
TTACATGGTGATAACATGGG+TGG 0.696576 tig0027269:+4086 None:intergenic
AAATGAGTCACAAAATGACG+TGG 0.704034 tig0027269:+3931 None:intergenic
AGTCATCATCGGTCACTCGG+CGG 0.705390 tig0027269:+7965 None:intergenic
ATGTTACATGGTGATAACAT+GGG 0.733161 tig0027269:+4083 None:intergenic
ATTATCTCTAGAATCCGACG+AGG 0.791211 tig0027269:+7360 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTAAAAAATAATTAAA+CGG - tig0027269:4152-4171 Msa1433350:three_prime_UTR 0.0%
!! TGTATATTAAATTATTGTTT+AGG - tig0027269:4423-4442 Msa1433350:intron 10.0%
!!! ATTTTGTTTAGAATAAAAAT+TGG - tig0027269:7908-7927 Msa1433350:five_prime_UTR 10.0%
!! TAGATTATGAATTATGATAA+AGG - tig0027269:4094-4113 Msa1433350:three_prime_UTR 15.0%
!! AGATTATGAATTATGATAAA+GGG - tig0027269:4095-4114 Msa1433350:three_prime_UTR 15.0%
!! ATTAAAAAATAATTAAACGG+TGG - tig0027269:4155-4174 Msa1433350:three_prime_UTR 15.0%
!!! ATTTAATTGATAATCTTATG+TGG - tig0027269:5011-5030 Msa1433350:intron 15.0%
!! ACTGTAATTTATTGAATATA+TGG - tig0027269:5400-5419 Msa1433350:intron 15.0%
!! ATTATAGAAAGAAAAAATCT+GGG - tig0027269:7051-7070 Msa1433350:CDS 15.0%
!! GATGATATTATAATTATAGA+GGG + tig0027269:7284-7303 None:intergenic 15.0%
!! TGATGATATTATAATTATAG+AGG + tig0027269:7285-7304 None:intergenic 15.0%
!! AATTGCAACAAAAAAAAATT+AGG + tig0027269:7309-7328 None:intergenic 15.0%
!!! TTTTTTTTTGTTGCAATTTT+TGG - tig0027269:7311-7330 Msa1433350:CDS 15.0%
!!! GTAATAATAAAAAGAGGTTT+TGG + tig0027269:4063-4082 None:intergenic 20.0%
!! GTTGTTGTAATAATAAAAAG+AGG + tig0027269:4069-4088 None:intergenic 20.0%
!!! TTTTTTCTATTCCTGTTTTT+AGG + tig0027269:4204-4223 None:intergenic 20.0%
!! AATTATTGTTTAGGAAGAAA+AGG - tig0027269:4432-4451 Msa1433350:intron 20.0%
!!! TTTTGTATTAAGGTTTTTGA+AGG - tig0027269:4940-4959 Msa1433350:intron 20.0%
!! AAATAGCTAACAATACATTA+AGG + tig0027269:5903-5922 None:intergenic 20.0%
!! AAAATTAACATTGTTGCAAA+GGG + tig0027269:6054-6073 None:intergenic 20.0%
!! TAAAATTAACATTGTTGCAA+AGG + tig0027269:6055-6074 None:intergenic 20.0%
!! GGTATTACTAAATCAATAAT+AGG - tig0027269:6296-6315 Msa1433350:intron 20.0%
!!! AATTATCAGTTTTAATGACA+TGG - tig0027269:6425-6444 Msa1433350:intron 20.0%
!!! TTTTTCTTTCTATAATCATG+TGG + tig0027269:7047-7066 None:intergenic 20.0%
!! GATTATAGAAAGAAAAAATC+TGG - tig0027269:7050-7069 Msa1433350:CDS 20.0%
!!! ATGATTTGTTTGATGAAAAA+AGG + tig0027269:7254-7273 None:intergenic 20.0%
!! ATATTATAATTATAGAGGGA+AGG + tig0027269:7280-7299 None:intergenic 20.0%
!!! AAAATAGACCATTTTGTAAT+GGG + tig0027269:7893-7912 None:intergenic 20.0%
!!! TATTCCTGTTTTTAGGAATT+AGG + tig0027269:4197-4216 None:intergenic 25.0%
! ACAGGAATAGAAAAAAGAAA+TGG - tig0027269:4208-4227 Msa1433350:three_prime_UTR 25.0%
! CAGGAATAGAAAAAAGAAAT+GGG - tig0027269:4209-4228 Msa1433350:three_prime_UTR 25.0%
! AGGAATAGAAAAAAGAAATG+GGG - tig0027269:4210-4229 Msa1433350:three_prime_UTR 25.0%
! TGCAATTAAAGCTATAATCT+AGG + tig0027269:4360-4379 None:intergenic 25.0%
! TATTTATCTATCTGCTAGAA+CGG - tig0027269:4681-4700 Msa1433350:intron 25.0%
! AAAGTAAGAAAGAACAAACA+TGG + tig0027269:5174-5193 None:intergenic 25.0%
!! TAGACAATTTGATAATCTCT+AGG - tig0027269:5196-5215 Msa1433350:intron 25.0%
!! AGACAATTTGATAATCTCTA+GGG - tig0027269:5197-5216 Msa1433350:intron 25.0%
! AATGGAACAAAAATATGTGT+AGG + tig0027269:5454-5473 None:intergenic 25.0%
! ATCTATAGCTCAATTCTAAA+TGG + tig0027269:5472-5491 None:intergenic 25.0%
! CTATTAGACCATTCAATAAT+AGG - tig0027269:5532-5551 Msa1433350:intron 25.0%
! TTGTAATTAATAGTAGCACA+CGG - tig0027269:5723-5742 Msa1433350:intron 25.0%
! TTCTCTTTGCAGATTAAAAT+TGG + tig0027269:5818-5837 None:intergenic 25.0%
!!! ATTGTTAGCTATTTTTTTCC+AGG - tig0027269:5909-5928 Msa1433350:intron 25.0%
!! TGTTGACATAAATTTTGTAC+AGG - tig0027269:6090-6109 Msa1433350:intron 25.0%
!! GTTGACATAAATTTTGTACA+GGG - tig0027269:6091-6110 Msa1433350:intron 25.0%
! AAAAAAGAGATATACCTGTT+GGG + tig0027269:6171-6190 None:intergenic 25.0%
! AAAAAAAGAGATATACCTGT+TGG + tig0027269:6172-6191 None:intergenic 25.0%
!!! CTTTTGTTGTCTTAGTTATA+CGG - tig0027269:6224-6243 Msa1433350:intron 25.0%
! TTGTTATACAAGTCAATAAC+AGG - tig0027269:6275-6294 Msa1433350:intron 25.0%
!! TTTCCTTTTACAAAACTATG+TGG - tig0027269:6361-6380 Msa1433350:intron 25.0%
!! TTTTCAAACCCAAAAAATGA+GGG + tig0027269:6571-6590 None:intergenic 25.0%
!!! TTTTTCAAACCCAAAAAATG+AGG + tig0027269:6572-6591 None:intergenic 25.0%
! CAAATTTGCAATATATCCTT+TGG + tig0027269:6646-6665 None:intergenic 25.0%
!! CTAGATATAATTTTACCTCA+AGG - tig0027269:6739-6758 Msa1433350:intron 25.0%
! ATCTTAATGTACTGTTAGAA+AGG - tig0027269:6769-6788 Msa1433350:intron 25.0%
! TCTTTAATGGTTTCAATCAA+TGG - tig0027269:6807-6826 Msa1433350:intron 25.0%
!! ATATTGCATCATCTTTTTGT+GGG + tig0027269:6900-6919 None:intergenic 25.0%
!! AATATTGCATCATCTTTTTG+TGG + tig0027269:6901-6920 None:intergenic 25.0%
! ATATCAACTCAAGATTGAAT+GGG - tig0027269:7336-7355 Msa1433350:CDS 25.0%
! AAATGTTTCGTACATCAATA+AGG + tig0027269:7530-7549 None:intergenic 25.0%
! ATATTTACAAGCATGTTACA+TGG + tig0027269:7837-7856 None:intergenic 25.0%
!! CAAAATAGACCATTTTGTAA+TGG + tig0027269:7894-7913 None:intergenic 25.0%
! GCATACTTAAAAGAAAATGA+AGG - tig0027269:7947-7966 Msa1433350:five_prime_UTR 25.0%
TGATAAAGGGATTGTAATGA+CGG - tig0027269:4108-4127 Msa1433350:three_prime_UTR 30.0%
GATTCCTAATTCCTAAAAAC+AGG - tig0027269:4190-4209 Msa1433350:three_prime_UTR 30.0%
!! GTTTGTTATGGTCAGAAATA+GGG + tig0027269:4301-4320 None:intergenic 30.0%
AATTGAGAACTTACTATGGA+AGG + tig0027269:4335-4354 None:intergenic 30.0%
GGTTAATTGAGAACTTACTA+TGG + tig0027269:4339-4358 None:intergenic 30.0%
TGACCAAATGAATGAGAAAT+TGG - tig0027269:4612-4631 Msa1433350:intron 30.0%
CAACCAATTTCTCATTCATT+TGG + tig0027269:4618-4637 None:intergenic 30.0%
ATTTATCTATCTGCTAGAAC+GGG - tig0027269:4682-4701 Msa1433350:intron 30.0%
CTATTCGAAATCAACATTGA+AGG + tig0027269:4847-4866 None:intergenic 30.0%
!! TGTTGATTTCGAATAGTTTG+AGG - tig0027269:4851-4870 Msa1433350:intron 30.0%
!!! GTACAGGTAGTTTTGTATTA+AGG - tig0027269:4930-4949 Msa1433350:intron 30.0%
TATCACTTTCAACTCTTTAC+CGG - tig0027269:5062-5081 Msa1433350:intron 30.0%
TTATTTAAATACCCGACATG+AGG - tig0027269:5291-5310 Msa1433350:intron 30.0%
! AGAAGCTAAGAAACAACTTT+TGG - tig0027269:5359-5378 Msa1433350:intron 30.0%
! GAAGCTAAGAAACAACTTTT+GGG - tig0027269:5360-5379 Msa1433350:intron 30.0%
!!! TAAGAAACAACTTTTGGGTT+TGG - tig0027269:5365-5384 Msa1433350:intron 30.0%
CCTTGCATAACAATAATATG+TGG + tig0027269:5505-5524 None:intergenic 30.0%
CCACATATTATTGTTATGCA+AGG - tig0027269:5502-5521 Msa1433350:intron 30.0%
TAAATCACTGTAAACCAACA+TGG + tig0027269:5558-5577 None:intergenic 30.0%
CAATGTGATGAACATGAAAT+GGG + tig0027269:5594-5613 None:intergenic 30.0%
TCAATGTGATGAACATGAAA+TGG + tig0027269:5595-5614 None:intergenic 30.0%
GTAAAAAATAAAACCTGACC+TGG + tig0027269:6011-6030 None:intergenic 30.0%
!! TTTGTTTTCACAAACATCTC+TGG - tig0027269:6127-6146 Msa1433350:intron 30.0%
!!! CATCCACATAGTTTTGTAAA+AGG + tig0027269:6367-6386 None:intergenic 30.0%
TTTACAAAACTATGTGGATG+AGG - tig0027269:6367-6386 Msa1433350:intron 30.0%
! AACATGATGCTTTTGTAACT+TGG - tig0027269:6513-6532 Msa1433350:intron 30.0%
! TTTGGGTTTGAAAAATCAGA+AGG - tig0027269:6577-6596 Msa1433350:intron 30.0%
ATATTGCAAATTTGCCATTG+AGG - tig0027269:6652-6671 Msa1433350:intron 30.0%
!! ATTAAGATGAATTAGCCTTG+AGG + tig0027269:6757-6776 None:intergenic 30.0%
TAGAAAGAAAAAATCTGGGT+TGG - tig0027269:7055-7074 Msa1433350:CDS 30.0%
CATATCAACTCAAGATTGAA+TGG - tig0027269:7335-7354 Msa1433350:CDS 30.0%
TGTATTTCCTTCAAAACATG+AGG - tig0027269:7603-7622 Msa1433350:CDS 30.0%
ACTAAAATTGAGCAAAACAG+AGG - tig0027269:7630-7649 Msa1433350:CDS 30.0%
ATGTTACATGGTGATAACAT+GGG + tig0027269:7825-7844 None:intergenic 30.0%
ACATGCTTGTAAATATTTGC+AGG - tig0027269:7841-7860 Msa1433350:five_prime_UTR 30.0%
CATGCTTGTAAATATTTGCA+GGG - tig0027269:7842-7861 Msa1433350:five_prime_UTR 30.0%
AGTTCATACCCATTACAAAA+TGG - tig0027269:7882-7901 Msa1433350:five_prime_UTR 30.0%
ACTGAACATGCAAACAAACA+AGG - tig0027269:3893-3912 Msa1433350:three_prime_UTR 35.0%
TGGGGAAAAAGCAATCTTTA+CGG - tig0027269:4228-4247 Msa1433350:three_prime_UTR 35.0%
!! GGTTTGTTATGGTCAGAAAT+AGG + tig0027269:4302-4321 None:intergenic 35.0%
! GGTAGATGATGATGAGTTAA+AGG - tig0027269:4453-4472 Msa1433350:intron 35.0%
GAAAGTGAATCAGAGATTGA+AGG - tig0027269:4475-4494 Msa1433350:intron 35.0%
TGAGAAATTGGTTGTCAAGA+AGG - tig0027269:4624-4643 Msa1433350:intron 35.0%
GAGAAATTGGTTGTCAAGAA+GGG - tig0027269:4625-4644 Msa1433350:intron 35.0%
TCAAGAAGGGATTGTTATCT+AGG - tig0027269:4638-4657 Msa1433350:intron 35.0%
CAAGAAGGGATTGTTATCTA+GGG - tig0027269:4639-4658 Msa1433350:intron 35.0%
AAGAAGGGATTGTTATCTAG+GGG - tig0027269:4640-4659 Msa1433350:intron 35.0%
AGGGATAAATTTGAGTCTGA+TGG - tig0027269:4730-4749 Msa1433350:CDS 35.0%
GGGATAAATTTGAGTCTGAT+GGG - tig0027269:4731-4750 Msa1433350:CDS 35.0%
TTTGGTTGTTGATCATTTGC+CGG - tig0027269:4810-4829 Msa1433350:intron 35.0%
TGATCATTTGCCGGAAATAT+CGG - tig0027269:4819-4838 Msa1433350:intron 35.0%
ATTGAAGGTTCCGATATTTC+CGG + tig0027269:4832-4851 None:intergenic 35.0%
TTCGAATAGTTTGAGGAATG+CGG - tig0027269:4858-4877 Msa1433350:intron 35.0%
! CACTTCCAGCTTTAATTCAT+GGG - tig0027269:4890-4909 Msa1433350:intron 35.0%
TTCTTCCCATGAATTAAAGC+TGG + tig0027269:4898-4917 None:intergenic 35.0%
CTTTAATTCATGGGAAGAAC+TGG - tig0027269:4899-4918 Msa1433350:intron 35.0%
AGAACTGGTTAATGATGTAC+AGG - tig0027269:4914-4933 Msa1433350:intron 35.0%
TGAAATTGTACCAGCAAACT+AGG + tig0027269:5109-5128 None:intergenic 35.0%
ATAAGCTTAATTGTGCTGGA+GGG + tig0027269:5135-5154 None:intergenic 35.0%
CAACATAAGCTTAATTGTGC+TGG + tig0027269:5139-5158 None:intergenic 35.0%
GATTGATAAATTGAGCTGCA+CGG - tig0027269:5228-5247 Msa1433350:intron 35.0%
ATGAAATATGCACCTCATGT+CGG + tig0027269:5306-5325 None:intergenic 35.0%
ACTGACATATGATTTCTGTC+TGG - tig0027269:5425-5444 Msa1433350:intron 35.0%
CTGACATATGATTTCTGTCT+GGG - tig0027269:5426-5445 Msa1433350:intron 35.0%
CAACATGGCCTATTATTGAA+TGG + tig0027269:5543-5562 None:intergenic 35.0%
CATTCAATAATAGGCCATGT+TGG - tig0027269:5541-5560 Msa1433350:intron 35.0%
! ATCACATTGATGACTTCGTA+TGG - tig0027269:5605-5624 Msa1433350:intron 35.0%
!! AGAGGGGTATTTCAAAAGTT+GGG + tig0027269:5656-5675 None:intergenic 35.0%
!! AAGAGGGGTATTTCAAAAGT+TGG + tig0027269:5657-5676 None:intergenic 35.0%
ACAATATGCCATCAACAAGA+GGG + tig0027269:5673-5692 None:intergenic 35.0%
TACAATATGCCATCAACAAG+AGG + tig0027269:5674-5693 None:intergenic 35.0%
ACCAATAAGCTTGCAAACAT+GGG + tig0027269:5775-5794 None:intergenic 35.0%
AACCAATAAGCTTGCAAACA+TGG + tig0027269:5776-5795 None:intergenic 35.0%
! AACTCAGTCTTGCTGATTAA+AGG + tig0027269:5855-5874 None:intergenic 35.0%
!!! GCTATTTTTTTCCAGGTTGT+TGG - tig0027269:5916-5935 Msa1433350:CDS 35.0%
! TGGTATTTTCTCTTGTTGGA+TGG + tig0027269:5991-6010 None:intergenic 35.0%
ATCCAACAAGAGAAAATACC+AGG - tig0027269:5990-6009 Msa1433350:intron 35.0%
TTTAATGACATGGTATCCCA+CGG - tig0027269:6435-6454 Msa1433350:intron 35.0%
! TGCTTTTGTAACTTGGAATC+TGG - tig0027269:6520-6539 Msa1433350:intron 35.0%
CATGACAATCCAGAAATGTA+GGG + tig0027269:6605-6624 None:intergenic 35.0%
TCATGACAATCCAGAAATGT+AGG + tig0027269:6606-6625 None:intergenic 35.0%
ATATATCCTTTGGCAAGATG+TGG + tig0027269:6636-6655 None:intergenic 35.0%
!! GTCTCTAAAGTCAACAGAAA+GGG + tig0027269:6690-6709 None:intergenic 35.0%
!! TGTCTCTAAAGTCAACAGAA+AGG + tig0027269:6691-6710 None:intergenic 35.0%
TTGAAACCATTAAAGATGCC+AGG + tig0027269:6803-6822 None:intergenic 35.0%
! TTTTTGTGGGCAACTTCAAT+AGG + tig0027269:6887-6906 None:intergenic 35.0%
!! AGAAAAAATCTGGGTTGGTT+TGG - tig0027269:7060-7079 Msa1433350:CDS 35.0%
TGAATTAACCACAATATCGC+AGG - tig0027269:7121-7140 Msa1433350:CDS 35.0%
!! AGGTCATTTTGCGCTTTATT+TGG - tig0027269:7198-7217 Msa1433350:CDS 35.0%
AAGATTGAATGGGTCAAGTT+CGG - tig0027269:7346-7365 Msa1433350:CDS 35.0%
ACAAGGATTGCCATAAGTTT+CGG + tig0027269:7375-7394 None:intergenic 35.0%
! TTCTCCAGAATTTCAAGTGA+AGG - tig0027269:7403-7422 Msa1433350:CDS 35.0%
ACTTCCTTCACTTGAAATTC+TGG + tig0027269:7410-7429 None:intergenic 35.0%
! ATTTCAAGTGAAGGAAGTAG+AGG - tig0027269:7412-7431 Msa1433350:CDS 35.0%
ATTGATAAAAAGGGGGGAAA+AGG + tig0027269:7483-7502 None:intergenic 35.0%
GAACAGATTGATAAAAAGGG+GGG + tig0027269:7489-7508 None:intergenic 35.0%
GGAACAGATTGATAAAAAGG+GGG + tig0027269:7490-7509 None:intergenic 35.0%
CGGAACAGATTGATAAAAAG+GGG + tig0027269:7491-7510 None:intergenic 35.0%
CCGGAACAGATTGATAAAAA+GGG + tig0027269:7492-7511 None:intergenic 35.0%
! CCCTTTTTATCAATCTGTTC+CGG - tig0027269:7489-7508 Msa1433350:intron 35.0%
TGTTTCGTACATCAATAAGG+AGG + tig0027269:7527-7546 None:intergenic 35.0%
!! AGTATCTCCTCATGTTTTGA+AGG + tig0027269:7613-7632 None:intergenic 35.0%
AATTGCAATTTCTGCTAGCA+AGG - tig0027269:7753-7772 Msa1433350:five_prime_UTR 35.0%
ATTGCAATTTCTGCTAGCAA+GGG - tig0027269:7754-7773 Msa1433350:five_prime_UTR 35.0%
CATGTTACATGGTGATAACA+TGG + tig0027269:7826-7845 None:intergenic 35.0%
AAATGAGTCACAAAATGACG+TGG + tig0027269:7977-7996 None:intergenic 35.0%
TTGCATGTTCAGTGTCAAAC+TGG + tig0027269:3886-3905 None:intergenic 40.0%
!! TCGCTTTTCTGAGTCATCAT+CGG + tig0027269:3954-3973 None:intergenic 40.0%
TAATGACGGTGAGGGAATAT+AGG - tig0027269:4122-4141 Msa1433350:three_prime_UTR 40.0%
! CAAAGCAGTTCACCTTGTTT+CGG - tig0027269:4253-4272 Msa1433350:CDS 40.0%
AATAGGGTTGAGAAGAACAG+TGG + tig0027269:4285-4304 None:intergenic 40.0%
TGAGAACTTACTATGGAAGG+AGG + tig0027269:4332-4351 None:intergenic 40.0%
!! TTCATTTTTGTCGTCCTCGT+CGG - tig0027269:4531-4550 Msa1433350:CDS 40.0%
!! ATTATCTCTAGAATCCGACG+AGG + tig0027269:4548-4567 None:intergenic 40.0%
TCATTCATTTGGTCATCACC+AGG + tig0027269:4607-4626 None:intergenic 40.0%
! AAATTTGAGTCTGATGGGTG+TGG - tig0027269:4736-4755 Msa1433350:CDS 40.0%
ACACTAGGTACCTCTTTCAA+CGG + tig0027269:4787-4806 None:intergenic 40.0%
GGCAAATGATCAACAACCAA+AGG + tig0027269:4811-4830 None:intergenic 40.0%
! GCACTTCCAGCTTTAATTCA+TGG - tig0027269:4889-4908 Msa1433350:intron 40.0%
TTTGCAGCACATGGAAACAT+GGG - tig0027269:5038-5057 Msa1433350:intron 40.0%
! TTTACCGGAGAAGTATGCTT+TGG - tig0027269:5077-5096 Msa1433350:intron 40.0%
CATAAGCTTAATTGTGCTGG+AGG + tig0027269:5136-5155 None:intergenic 40.0%
TGAAATATGCACCTCATGTC+GGG + tig0027269:5305-5324 None:intergenic 40.0%
!!! GAAACAACTTTTGGGTTTGG+TGG - tig0027269:5368-5387 Msa1433350:intron 40.0%
GATGACTTCGTATGGATGAA+TGG - tig0027269:5613-5632 Msa1433350:intron 40.0%
TGAAATACCCCTCTTGTTGA+TGG - tig0027269:5662-5681 Msa1433350:intron 40.0%
CAATATGCCATCAACAAGAG+GGG + tig0027269:5672-5691 None:intergenic 40.0%
TAGTAGCACACGGAGTTTAA+CGG - tig0027269:5733-5752 Msa1433350:intron 40.0%
TCCCATGTTTGCAAGCTTAT+TGG - tig0027269:5771-5790 Msa1433350:CDS 40.0%
GGTTAATAAGCTCATGCTGT+TGG - tig0027269:5792-5811 Msa1433350:CDS 40.0%
GTTCTACACTCTACATTCAG+TGG - tig0027269:5872-5891 Msa1433350:intron 40.0%
TACACTCTACATTCAGTGGT+TGG - tig0027269:5876-5895 Msa1433350:intron 40.0%
TCTCTTGTTGGATGGTTGAA+GGG + tig0027269:5983-6002 None:intergenic 40.0%
TTCTCTTGTTGGATGGTTGA+AGG + tig0027269:5984-6003 None:intergenic 40.0%
! GACCTGGTATTTTCTCTTGT+TGG + tig0027269:5995-6014 None:intergenic 40.0%
ACAAGAGAAAATACCAGGTC+AGG - tig0027269:5995-6014 Msa1433350:intron 40.0%
TTAATGACATGGTATCCCAC+GGG - tig0027269:6436-6455 Msa1433350:intron 40.0%
ATTGTACCACATCTTGCCAA+AGG - tig0027269:6627-6646 Msa1433350:intron 40.0%
GGAAATCAAGCTTTCCTCAA+TGG + tig0027269:6669-6688 None:intergenic 40.0%
GTTAGAAAGGATGAGTTTCC+TGG - tig0027269:6782-6801 Msa1433350:intron 40.0%
GAGTTTCCTGGCATCTTTAA+TGG - tig0027269:6794-6813 Msa1433350:intron 40.0%
TGGTGCAAAGTGTGAAGTAA+CGG + tig0027269:7153-7172 None:intergenic 40.0%
AGTTCGGTTTCCGAAACTTA+TGG - tig0027269:7362-7381 Msa1433350:CDS 40.0%
TCTGGAGAATGTGCTAAACA+AGG + tig0027269:7392-7411 None:intergenic 40.0%
TAAAAAGGGGGGAAAAGGTT+GGG + tig0027269:7478-7497 None:intergenic 40.0%
ATAAAAAGGGGGGAAAAGGT+TGG + tig0027269:7479-7498 None:intergenic 40.0%
GCCGGAACAGATTGATAAAA+AGG + tig0027269:7493-7512 None:intergenic 40.0%
AAGGAGGTAAACAAATGAGC+CGG + tig0027269:7511-7530 None:intergenic 40.0%
TCAGTAAAATGCGAACTGCA+AGG + tig0027269:7711-7730 None:intergenic 40.0%
TTACATGGTGATAACATGGG+TGG + tig0027269:7822-7841 None:intergenic 40.0%
AAGTTTCGTGCCTCAACAAC+CGG - tig0027269:4002-4021 Msa1433350:three_prime_UTR 45.0%
!! GGTGTTGATGATTATGCTGC+CGG + tig0027269:4042-4061 None:intergenic 45.0%
AAGGGATTGTAATGACGGTG+AGG - tig0027269:4113-4132 Msa1433350:three_prime_UTR 45.0%
AGGGATTGTAATGACGGTGA+GGG - tig0027269:4114-4133 Msa1433350:three_prime_UTR 45.0%
GATAAGATTGTGACTGCAGC+TGG - tig0027269:4580-4599 Msa1433350:intron 45.0%
TATCTATCTGCTAGAACGGG+TGG - tig0027269:4685-4704 Msa1433350:intron 45.0%
! GGTGGATTTCCAACACAAGA+TGG - tig0027269:4703-4722 Msa1433350:CDS 45.0%
TTCCAACACAAGATGGCGAA+AGG - tig0027269:4710-4729 Msa1433350:CDS 45.0%
TCCAACACAAGATGGCGAAA+GGG - tig0027269:4711-4730 Msa1433350:CDS 45.0%
! TTTTCAACCGCCGTTGAAAG+AGG - tig0027269:4774-4793 Msa1433350:intron 45.0%
! TCAACAACCAAAGGCACACT+AGG + tig0027269:4802-4821 None:intergenic 45.0%
TGTGGTTTCTTTGCAGCACA+TGG - tig0027269:5029-5048 Msa1433350:intron 45.0%
CTTTGCAGCACATGGAAACA+TGG - tig0027269:5037-5056 Msa1433350:intron 45.0%
CTGCACGGTAGATTAGAGAT+AGG - tig0027269:5243-5262 Msa1433350:intron 45.0%
!!! ACAACTTTTGGGTTTGGTGG+TGG - tig0027269:5371-5390 Msa1433350:intron 45.0%
!!! CAACTTTTGGGTTTGGTGGT+GGG - tig0027269:5372-5391 Msa1433350:intron 45.0%
AGTAGCACACGGAGTTTAAC+GGG - tig0027269:5734-5753 Msa1433350:intron 45.0%
! CACCAAACACTGCTCCTTTT+CGG + tig0027269:5945-5964 None:intergenic 45.0%
CTCTTGTTGGATGGTTGAAG+GGG + tig0027269:5982-6001 None:intergenic 45.0%
ATGTGCACATCATAACCCGT+GGG + tig0027269:6454-6473 None:intergenic 45.0%
AATGTGCACATCATAACCCG+TGG + tig0027269:6455-6474 None:intergenic 45.0%
AACCCAAAAAATGAGGGCGA+CGG + tig0027269:6565-6584 None:intergenic 45.0%
!! TATCTCTGAGATTCAGCACG+AGG - tig0027269:6945-6964 Msa1433350:intron 45.0%
GGTTTACTCCTGCGATATTG+TGG + tig0027269:7132-7151 None:intergenic 45.0%
!! ACCACTGACTTTCTAGCGAT+TGG - tig0027269:7169-7188 Msa1433350:CDS 45.0%
ACCAATCGCTAGAAAGTCAG+TGG + tig0027269:7173-7192 None:intergenic 45.0%
! ACTGACTTTCTAGCGATTGG+TGG - tig0027269:7172-7191 Msa1433350:CDS 45.0%
! CTGACTTTCTAGCGATTGGT+GGG - tig0027269:7173-7192 Msa1433350:CDS 45.0%
! TGACTTTCTAGCGATTGGTG+GGG - tig0027269:7174-7193 Msa1433350:CDS 45.0%
GTTCATGAGTCTGTGAGTGA+GGG + tig0027269:7452-7471 None:intergenic 45.0%
AAAAAGGGGGGAAAAGGTTG+GGG + tig0027269:7477-7496 None:intergenic 45.0%
TCTTTCCTCCATGCAGTTGT+GGG - tig0027269:7576-7595 Msa1433350:intron 45.0%
!!! TTTAAATTTTAAATGAAATA+TGG - tig0027269:6834-6853 Msa1433350:CDS 5.0%
CTGAGTCATCATCGGTCACT+CGG + tig0027269:3946-3965 None:intergenic 50.0%
!! GAAGCGTTTTCCGGTTGTTG+AGG + tig0027269:4015-4034 None:intergenic 50.0%
ACCGGAAAACGCTTCTACAC+CGG - tig0027269:4020-4039 Msa1433350:three_prime_UTR 50.0%
CAGTGGTGAGATCCGAAACA+AGG + tig0027269:4268-4287 None:intergenic 50.0%
!! GAGGACGAGAGGGTTTGTTA+TGG + tig0027269:4313-4332 None:intergenic 50.0%
ACTATGGAAGGAGGACGAGA+GGG + tig0027269:4323-4342 None:intergenic 50.0%
TACTATGGAAGGAGGACGAG+AGG + tig0027269:4324-4343 None:intergenic 50.0%
GCAGTAAACGACGACGTATC+AGG + tig0027269:4502-4521 None:intergenic 50.0%
TCCCTTTCGCCATCTTGTGT+TGG + tig0027269:4715-4734 None:intergenic 50.0%
CTAGGTACCTCTTTCAACGG+CGG + tig0027269:4784-4803 None:intergenic 50.0%
!! AGAGGTACCTAGTGTGCCTT+TGG - tig0027269:4792-4811 Msa1433350:intron 50.0%
CAGGCCAAAGCATACTTCTC+CGG + tig0027269:5084-5103 None:intergenic 50.0%
TGTACCAGCAAACTAGGTCC+AGG + tig0027269:5103-5122 None:intergenic 50.0%
AACATGGGACTTCAACACGC+AGG + tig0027269:5760-5779 None:intergenic 50.0%
! CTTTTCGGTCTCCAACAACC+TGG + tig0027269:5930-5949 None:intergenic 50.0%
CAGGTTGTTGGAGACCGAAA+AGG - tig0027269:5928-5947 Msa1433350:CDS 50.0%
GACCGAAAAGGAGCAGTGTT+TGG - tig0027269:5940-5959 Msa1433350:CDS 50.0%
CGAAAAGGAGCAGTGTTTGG+TGG - tig0027269:5943-5962 Msa1433350:CDS 50.0%
AAAAAATGAGGGCGACGGGT+GGG + tig0027269:6560-6579 None:intergenic 50.0%
!!! ACCCGTCGCCCTCATTTTTT+GGG - tig0027269:6560-6579 Msa1433350:intron 50.0%
ACCCAAAAAATGAGGGCGAC+GGG + tig0027269:6564-6583 None:intergenic 50.0%
CAGAAGGCTCCCTACATTTC+TGG - tig0027269:6593-6612 Msa1433350:intron 50.0%
! GACTTTCTAGCGATTGGTGG+GGG - tig0027269:7175-7194 Msa1433350:CDS 50.0%
GGTTCATGAGTCTGTGAGTG+AGG + tig0027269:7453-7472 None:intergenic 50.0%
CTCTTTCCTCCATGCAGTTG+TGG - tig0027269:7575-7594 Msa1433350:intron 50.0%
CTTTCCTCCATGCAGTTGTG+GGG - tig0027269:7577-7596 Msa1433350:intron 50.0%
TACAAAGCCCCACAACTGCA+TGG + tig0027269:7587-7606 None:intergenic 50.0%
!! TTGAGCAAAACAGAGGCACC+TGG - tig0027269:7637-7656 Msa1433350:CDS 50.0%
!! TGAGCAAAACAGAGGCACCT+GGG - tig0027269:7638-7657 Msa1433350:CDS 50.0%
ATTTACCAGCGAGAGATCCC+AGG + tig0027269:7658-7677 None:intergenic 50.0%
AGTCATCATCGGTCACTCGG+CGG + tig0027269:3943-3962 None:intergenic 55.0%
!!! GCCGGTGTAGAAGCGTTTTC+CGG + tig0027269:4024-4043 None:intergenic 55.0%
ATTGTGACTGCAGCTGGACC+TGG - tig0027269:4586-4605 Msa1433350:intron 55.0%
! TGAGTCTGATGGGTGTGGTG+TGG - tig0027269:4741-4760 Msa1433350:CDS 55.0%
! CGGAGAAGTATGCTTTGGCC+TGG - tig0027269:5082-5101 Msa1433350:intron 55.0%
! TTGGCCTGGACCTAGTTTGC+TGG - tig0027269:5096-5115 Msa1433350:intron 55.0%
! AGGAGCAGTGTTTGGTGGCT+TGG - tig0027269:5948-5967 Msa1433350:CDS 55.0%
CCTGTTGGGCGATATACGAC+AGG + tig0027269:6157-6176 None:intergenic 55.0%
CCTGTCGTATATCGCCCAAC+AGG - tig0027269:6154-6173 Msa1433350:intron 55.0%
CAAAAAATGAGGGCGACGGG+TGG + tig0027269:6561-6580 None:intergenic 55.0%
!!! CACCCGTCGCCCTCATTTTT+TGG - tig0027269:6559-6578 Msa1433350:intron 55.0%
! TTTCTAGCGATTGGTGGGGG+AGG - tig0027269:7178-7197 Msa1433350:CDS 55.0%
AAAGCCCCACAACTGCATGG+AGG + tig0027269:7584-7603 None:intergenic 55.0%
AAGGGGGGAAAAGGTTGGGG+AGG + tig0027269:7474-7493 None:intergenic 60.0%
AGGCACCTGGGATCTCTCGC+TGG - tig0027269:7650-7669 Msa1433350:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0027269 gene 3877 8050 3877 ID=Msa1433350;Name=Msa1433350
tig0027269 mRNA 3877 8050 3877 ID=Msa1433350-mRNA-1;Parent=Msa1433350;Name=Msa1433350-mRNA-1;_AED=0.07;_eAED=0.07;_QI=350|1|1|1|0.57|0.62|8|375|359
tig0027269 exon 3877 4335 3877 ID=Msa1433350-mRNA-1:exon:8609;Parent=Msa1433350-mRNA-1
tig0027269 exon 4494 4578 4494 ID=Msa1433350-mRNA-1:exon:8608;Parent=Msa1433350-mRNA-1
tig0027269 exon 4697 4784 4697 ID=Msa1433350-mRNA-1:exon:8607;Parent=Msa1433350-mRNA-1
tig0027269 exon 5752 5815 5752 ID=Msa1433350-mRNA-1:exon:8606;Parent=Msa1433350-mRNA-1
tig0027269 exon 5916 5996 5916 ID=Msa1433350-mRNA-1:exon:8605;Parent=Msa1433350-mRNA-1
tig0027269 exon 6810 6882 6810 ID=Msa1433350-mRNA-1:exon:8604;Parent=Msa1433350-mRNA-1
tig0027269 exon 6992 7482 6992 ID=Msa1433350-mRNA-1:exon:8603;Parent=Msa1433350-mRNA-1
tig0027269 exon 7587 8050 7587 ID=Msa1433350-mRNA-1:exon:8602;Parent=Msa1433350-mRNA-1
tig0027269 five_prime_UTR 7701 8050 7701 ID=Msa1433350-mRNA-1:five_prime_utr;Parent=Msa1433350-mRNA-1
tig0027269 CDS 7587 7700 7587 ID=Msa1433350-mRNA-1:cds;Parent=Msa1433350-mRNA-1
tig0027269 CDS 6992 7482 6992 ID=Msa1433350-mRNA-1:cds;Parent=Msa1433350-mRNA-1
tig0027269 CDS 6810 6882 6810 ID=Msa1433350-mRNA-1:cds;Parent=Msa1433350-mRNA-1
tig0027269 CDS 5916 5996 5916 ID=Msa1433350-mRNA-1:cds;Parent=Msa1433350-mRNA-1
tig0027269 CDS 5752 5815 5752 ID=Msa1433350-mRNA-1:cds;Parent=Msa1433350-mRNA-1
tig0027269 CDS 4697 4784 4697 ID=Msa1433350-mRNA-1:cds;Parent=Msa1433350-mRNA-1
tig0027269 CDS 4494 4578 4494 ID=Msa1433350-mRNA-1:cds;Parent=Msa1433350-mRNA-1
tig0027269 CDS 4252 4335 4252 ID=Msa1433350-mRNA-1:cds;Parent=Msa1433350-mRNA-1
tig0027269 three_prime_UTR 3877 4251 3877 ID=Msa1433350-mRNA-1:three_prime_utr;Parent=Msa1433350-mRNA-1
Gene Sequence

>Msa1433350

ATGGGGAAAAAGCAATCTTTACGGAGCAAAGCAGTTCACCTTGTTTCGGATCTCACCACTGTTCTTCTCAACCCTATTTCTGACCATAACAAACCCTCTCGTCCTCCTTCCATAGAAGAAAAGGTAGATGATGATGAGTTAAAGGAAAGTGAATCAGAGATTGAAGGACCTGATACGTCGTCGTTTACTGCATTCTTATATTCATTTTTGTCGTCCTCGTCGGATTCTAGAGATAATAATGCAAATGATGATAAGATTGTGACTGCAGCTGGACCTGGTGATGACCAAATGAATGAGAAATTGGTTGTCAAGAAGGGATTGTTATCTAGGGGTAAACAATCACTCAAAGCTATTTATCTATCTGCTAGAACGGGTGGATTTCCAACACAAGATGGCGAAAGGGATAAATTTGAGTCTGATGGGTGTGGTGTGGAGATGAAATGTTTTCAACCGCCGTTGAAAGAGGTACCTAGTGTGCCTTTGGTTGTTGATCATTTGCCGGAAATATCGGAACCTTCAATGTTGATTTCGAATAGTTTGAGGAATGCGGTTTATGATGCACTTCCAGCTTTAATTCATGGGAAGAACTGGTTAATGATGTACAGCACATGGAAACATGGGATATCACTTTCAACTCTTTACCGGAGAAGTATGCTTTGGCCTGGACCTAGTTTGCTGGTTGTTGGAGACCGAAAAGGAGCAGTGTTTGGTGGCTTGGTTGAAGCACCCCTTCAACCATCCAACAAGAGAAAATACCAGGGAACAAACAGTACATTTGTTTTCACAAACATCTCTGGTCATCCTGTCGTATATCGCCCAACAGGAGTAAACCGTTACTTCACACTTTGCACCACTGACTTTCTAGCGATTGGTGGGGGAGGTCATTTTGCGCTTTATTTGGAGTGTGATCTATTGAATGGGTCAAGTTCGGTTTCCGAAACTTATGGCAATCCTTGTTTAGCACATTCTCCAGAATTTCAAGTGAAGGAAGTAGAGTTGTGGGGCTTTGTATTTCCTTCAAAACATGAGGAGATACTAAAATTGAGCAAAACAGAGGCACCTGGGATCTCTCGCTGGTAA
Protein sequence

>Msa1433350

MGKKQSLRSKAVHLVSDLTTVLLNPISDHNKPSRPPSIEEKVDDDELKESESEIEGPDTSSFTAFLYSFLSSSSDSRDNNANDDKIVTAAGPGDDQMNEKLVVKKGLLSRGKQSLKAIYLSARTGGFPTQDGERDKFESDGCGVEMKCFQPPLKEVPSVPLVVDHLPEISEPSMLISNSLRNAVYDALPALIHGKNWLMMYSTWKHGISLSTLYRRSMLWPGPSLLVVGDRKGAVFGGLVEAPLQPSNKRKYQGTNSTFVFTNISGHPVVYRPTGVNRYFTLCTTDFLAIGGGGHFALYLECDLLNGSSSVSETYGNPCLAHSPEFQVKEVELWGFVFPSKHEEILKLSKTEAPGISRW*