AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0960740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0960740 MtrunA17_Chr6g0479111 98.261 230 2 2 1 228 1 230 3.40e-169 465
Msa0960740 MtrunA17_Chr3g0110281 62.500 160 55 3 68 223 30 188 1.50e-67 207
Msa0960740 MtrunA17_Chr1g0161131 59.748 159 60 3 70 225 1 158 1.81e-63 195
Msa0960740 MtrunA17_Chr8g0391621 59.006 161 62 3 70 227 1 160 4.01e-63 194
Msa0960740 MtrunA17_Chr5g0434521 56.250 160 63 3 68 223 8 164 2.87e-56 177
Msa0960740 MtrunA17_Chr8g0353331 47.771 157 73 2 71 218 1 157 6.26e-44 145
Msa0960740 MtrunA17_Chr7g0252391 47.239 163 74 3 71 221 1 163 3.09e-42 142
Msa0960740 MtrunA17_Chr1g0189471 50.000 60 27 1 77 133 7 66 4.10e-16 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0960740 AT1G18300.1 58.046 174 68 3 53 222 23 195 6.81e-70 213
Msa0960740 AT1G73540.1 60.736 163 59 4 64 224 35 194 6.19e-64 197
Msa0960740 AT1G14860.1 60.256 156 59 2 70 223 1 155 1.50e-62 193
Msa0960740 AT2G01670.1 55.488 164 70 2 67 228 3 165 7.48e-61 189
Msa0960740 AT1G12880.1 46.988 166 73 3 71 221 1 166 3.52e-42 142
Msa0960740 AT3G26690.1 44.910 167 76 3 71 221 1 167 5.36e-39 134
Msa0960740 AT3G26690.2 44.910 167 76 3 71 221 1 167 5.36e-39 134
Msa0960740 AT3G12600.1 49.375 160 70 3 71 219 1 160 1.07e-36 127
Msa0960740 AT3G12600.2 49.324 148 64 3 83 219 4 151 1.28e-32 116

Find 53 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTCTTATGTTCATTTC+TGG 0.092026 6_3:-80750586 None:intergenic
TGCAGAGTAATTTGGGTAAA+TGG 0.215433 6_3:+80750482 Msa0960740:intron
TAGGCATTCTCCCTTGCTTT+TGG 0.224935 6_3:+80751068 Msa0960740:three_prime_UTR
TGAACATAAGAAGAAGAAAA+TGG 0.253808 6_3:+80750593 Msa0960740:CDS
ATAGAAGAAGCTGGTGTTAT+TGG 0.256499 6_3:+80750343 Msa0960740:CDS
GTAATCAAAAGTCAAGAATT+TGG 0.261842 6_3:+80751145 Msa0960740:three_prime_UTR
AATAACACCAGCTTCTTCTA+TGG 0.287922 6_3:-80750341 None:intergenic
TTAGCAAGGAGTTGGATAAT+TGG 0.322855 6_3:+80750563 Msa0960740:CDS
AGAAGCACTCAAAAGATATT+AGG 0.325489 6_3:+80751111 Msa0960740:three_prime_UTR
TTGCTATTCTCTCACTTTGA+TGG 0.335413 6_3:+80751420 Msa0960740:three_prime_UTR
GAAGGAAGCTTTAGATGAAT+TGG 0.336584 6_3:+80750999 Msa0960740:CDS
ACCTAAAACTTAGATTGAAT+TGG 0.341917 6_3:-80751034 None:intergenic
TGCAAATGTCTACCAGTTCT+AGG 0.360990 6_3:-80749636 None:intergenic
TCTACGGTGGATCACTTCTA+AGG 0.373192 6_3:-80751275 None:intergenic
GCTTCCTTCATCCAAGCATA+TGG 0.390570 6_3:-80750985 None:intergenic
TGCTATTCTCTCACTTTGAT+GGG 0.392243 6_3:+80751421 Msa0960740:three_prime_UTR
AACCAACAAAAGAATTGTAA+TGG 0.417912 6_3:+80749497 Msa0960740:CDS
AAGAAATATGCCCATATGCT+TGG 0.435806 6_3:+80750974 Msa0960740:CDS
TGTTTGGTTTCTCCTAGAAC+TGG 0.445974 6_3:+80749624 Msa0960740:CDS
CATATATCCTTCATGCATAG+TGG 0.447247 6_3:-80750527 None:intergenic
ATTGGAGAATATGATGTGTT+TGG 0.449206 6_3:+80749608 Msa0960740:CDS
ACCAACAAAAGAATTGTAAT+GGG 0.449371 6_3:+80749498 Msa0960740:CDS
GAACATAAGAAGAAGAAAAT+GGG 0.454169 6_3:+80750594 Msa0960740:CDS
GTTCCCTTTGCTTGTTAGCA+AGG 0.472162 6_3:+80750549 Msa0960740:CDS
TTTGCTTGTTAGCAAGGAGT+TGG 0.481309 6_3:+80750555 Msa0960740:CDS
GAATTCTTAGAGTGTAATTG+AGG 0.490536 6_3:+80751247 Msa0960740:three_prime_UTR
AAAGAATGGAACTCAAGAAA+AGG 0.494824 6_3:+80750213 Msa0960740:CDS
ATTAGTGCTCAAAAGGGTAG+TGG 0.497315 6_3:+80750253 Msa0960740:CDS
GAATTGACTTTGTACATCTA+CGG 0.497466 6_3:-80751291 None:intergenic
ATCATATTCTCCAATTGTTG+AGG 0.499473 6_3:-80749600 None:intergenic
TCATATTCTCCAATTGTTGA+GGG 0.508447 6_3:-80749599 None:intergenic
AACTCAAGAAAAGGAAATAG+AGG 0.509278 6_3:+80750222 Msa0960740:CDS
AACTCCTTGCTAACAAGCAA+AGG 0.516565 6_3:-80750553 None:intergenic
TCTTAAAGCAGCTTGTTCCA+TGG 0.519018 6_3:-80750314 None:intergenic
CTTCCTTCATCCAAGCATAT+GGG 0.522789 6_3:-80750984 None:intergenic
GTGGAATGCAGTTCCCGAAA+GGG 0.535806 6_3:+80750272 Msa0960740:CDS
TGGAATGCAGTTCCCGAAAG+GGG 0.536382 6_3:+80750273 Msa0960740:CDS
ACAAGGATGTCGTCAAGTTG+TGG 0.541451 6_3:+80749668 Msa0960740:CDS
CAAGGATGTCGTCAAGTTGT+GGG 0.550727 6_3:+80749669 Msa0960740:CDS
ACTCCTTGCTAACAAGCAAA+GGG 0.551729 6_3:-80750552 None:intergenic
ATGCCCATATGCTTGGATGA+AGG 0.557447 6_3:+80750981 Msa0960740:CDS
CTTTGTAGATTCCAAAAGCA+AGG 0.558395 6_3:-80751079 None:intergenic
ATCCTTCATGCATAGTGGGT+TGG 0.558647 6_3:-80750522 None:intergenic
AGAGAAACCATAGAAGAAGC+TGG 0.566164 6_3:+80750334 Msa0960740:CDS
CGCCAACCCACTATGCATGA+AGG 0.567290 6_3:+80750520 Msa0960740:CDS
CATTTGCAACGTTATGAACA+AGG 0.571762 6_3:+80749651 Msa0960740:CDS
ATATATCCTTCATGCATAGT+GGG 0.580319 6_3:-80750526 None:intergenic
AGTGGAATGCAGTTCCCGAA+AGG 0.598632 6_3:+80750271 Msa0960740:CDS
TTTGTAGATTCCAAAAGCAA+GGG 0.611060 6_3:-80751078 None:intergenic
TTGACTTTGTACATCTACGG+TGG 0.634012 6_3:-80751288 None:intergenic
AAGGATGTCGTCAAGTTGTG+GGG 0.655005 6_3:+80749670 Msa0960740:CDS
GGAATGCAGTTCCCGAAAGG+GGG 0.659068 6_3:+80750274 Msa0960740:CDS
TGTAATCATGCAGTTGACTG+TGG 0.660929 6_3:+80750942 Msa0960740:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAATTTTTTGAAAATTTTA+AGG + chr6_3:80749911-80749930 Msa0960740:intron 10.0%
!! ATATTATAAAAGTTGAATAT+AGG - chr6_3:80750635-80750654 None:intergenic 10.0%
!!! GAAATTTTTTGAAAATTTTA+AGG + chr6_3:80749911-80749930 Msa0960740:intron 10.0%
!! ATATTATAAAAGTTGAATAT+AGG - chr6_3:80750635-80750654 None:intergenic 10.0%
!!! GACAATTTATGAAATTTTTA+AGG + chr6_3:80749755-80749774 Msa0960740:intron 15.0%
!!! AAAATTTTGAATTGAATATG+AGG + chr6_3:80749800-80749819 Msa0960740:intron 15.0%
!!! AAATTTTGAATTGAATATGA+GGG + chr6_3:80749801-80749820 Msa0960740:intron 15.0%
!!! AAGTTTTGATTTTTAAGATT+TGG + chr6_3:80749955-80749974 Msa0960740:intron 15.0%
!!! ATTTTTCATGATACAATAAT+TGG + chr6_3:80750421-80750440 Msa0960740:intron 15.0%
!! TTACAAATGAAAGAAATATT+AGG - chr6_3:80750927-80750946 None:intergenic 15.0%
!!! GACAATTTATGAAATTTTTA+AGG + chr6_3:80749755-80749774 Msa0960740:intron 15.0%
!!! AAAATTTTGAATTGAATATG+AGG + chr6_3:80749800-80749819 Msa0960740:intron 15.0%
!!! AAATTTTGAATTGAATATGA+GGG + chr6_3:80749801-80749820 Msa0960740:intron 15.0%
!!! AAGTTTTGATTTTTAAGATT+TGG + chr6_3:80749955-80749974 Msa0960740:intron 15.0%
!!! ATTTTTCATGATACAATAAT+TGG + chr6_3:80750421-80750440 Msa0960740:intron 15.0%
!! TTACAAATGAAAGAAATATT+AGG - chr6_3:80750927-80750946 None:intergenic 15.0%
!!! TTTTTAAGGTTTTTCTCAAT+TGG + chr6_3:80749769-80749788 Msa0960740:intron 20.0%
!!! TTTTAAGGTTTTTCTCAATT+GGG + chr6_3:80749770-80749789 Msa0960740:intron 20.0%
!!! GACAATTTTTGATAACTTTA+AGG + chr6_3:80749823-80749842 Msa0960740:intron 20.0%
!!! AGGTTTTTTTTTTTCTCAAT+TGG + chr6_3:80749843-80749862 Msa0960740:intron 20.0%
!!! GGTTTTTTTTTTTCTCAATT+GGG + chr6_3:80749844-80749863 Msa0960740:intron 20.0%
!!! AAGTTTGGATTTTTATTGTT+TGG + chr6_3:80749874-80749893 Msa0960740:intron 20.0%
!!! AATTTTAAGGTTTTTTCAGT+TGG + chr6_3:80749924-80749943 Msa0960740:intron 20.0%
!!! ATTTTAAGGTTTTTTCAGTT+GGG + chr6_3:80749925-80749944 Msa0960740:intron 20.0%
!!! TTTTTAATGTTTTTCTCAAG+TGG + chr6_3:80750006-80750025 Msa0960740:intron 20.0%
!!! TTTTAATGTTTTTCTCAAGT+GGG + chr6_3:80750007-80750026 Msa0960740:intron 20.0%
!! TGATTCAACAATGAATAAAA+GGG - chr6_3:80750059-80750078 None:intergenic 20.0%
!! ATGATTCAACAATGAATAAA+AGG - chr6_3:80750060-80750079 None:intergenic 20.0%
!! TTTATTCATTGTTGAATCAT+TGG + chr6_3:80750060-80750079 Msa0960740:intron 20.0%
!! TAATTTGAATTTGATGTATG+TGG + chr6_3:80750118-80750137 Msa0960740:intron 20.0%
!! AATTTGAATTTGATGTATGT+GGG + chr6_3:80750119-80750138 Msa0960740:intron 20.0%
!!! TTCAATCACTTTTTTAGATT+TGG + chr6_3:80750392-80750411 Msa0960740:intron 20.0%
!! TTTATAAATGACACTTGATT+AGG - chr6_3:80750808-80750827 None:intergenic 20.0%
!! TCTTAATTAAGTAGCATTAT+TGG + chr6_3:80750874-80750893 Msa0960740:intron 20.0%
!!! TCTTTTATTCAATCATTCTT+TGG + chr6_3:80751316-80751335 Msa0960740:three_prime_UTR 20.0%
!!! TTTTTAAGGTTTTTCTCAAT+TGG + chr6_3:80749769-80749788 Msa0960740:intron 20.0%
!!! TTTTAAGGTTTTTCTCAATT+GGG + chr6_3:80749770-80749789 Msa0960740:intron 20.0%
!!! GACAATTTTTGATAACTTTA+AGG + chr6_3:80749823-80749842 Msa0960740:intron 20.0%
!!! AGGTTTTTTTTTTTCTCAAT+TGG + chr6_3:80749843-80749862 Msa0960740:intron 20.0%
!!! GGTTTTTTTTTTTCTCAATT+GGG + chr6_3:80749844-80749863 Msa0960740:intron 20.0%
!!! AAGTTTGGATTTTTATTGTT+TGG + chr6_3:80749874-80749893 Msa0960740:intron 20.0%
!!! AATTTTAAGGTTTTTTCAGT+TGG + chr6_3:80749924-80749943 Msa0960740:intron 20.0%
!!! ATTTTAAGGTTTTTTCAGTT+GGG + chr6_3:80749925-80749944 Msa0960740:intron 20.0%
!!! TTTTTAATGTTTTTCTCAAG+TGG + chr6_3:80750006-80750025 Msa0960740:intron 20.0%
!!! TTTTAATGTTTTTCTCAAGT+GGG + chr6_3:80750007-80750026 Msa0960740:intron 20.0%
!! TGATTCAACAATGAATAAAA+GGG - chr6_3:80750059-80750078 None:intergenic 20.0%
!! ATGATTCAACAATGAATAAA+AGG - chr6_3:80750060-80750079 None:intergenic 20.0%
!! TTTATTCATTGTTGAATCAT+TGG + chr6_3:80750060-80750079 Msa0960740:intron 20.0%
!! TAATTTGAATTTGATGTATG+TGG + chr6_3:80750118-80750137 Msa0960740:intron 20.0%
!! AATTTGAATTTGATGTATGT+GGG + chr6_3:80750119-80750138 Msa0960740:intron 20.0%
!!! TTCAATCACTTTTTTAGATT+TGG + chr6_3:80750392-80750411 Msa0960740:intron 20.0%
!! TTTATAAATGACACTTGATT+AGG - chr6_3:80750808-80750827 None:intergenic 20.0%
!! TCTTAATTAAGTAGCATTAT+TGG + chr6_3:80750874-80750893 Msa0960740:intron 20.0%
!!! TCTTTTATTCAATCATTCTT+TGG + chr6_3:80751316-80751335 Msa0960740:three_prime_UTR 20.0%
! AACCAACAAAAGAATTGTAA+TGG + chr6_3:80749497-80749516 Msa0960740:CDS 25.0%
! ACCAACAAAAGAATTGTAAT+GGG + chr6_3:80749498-80749517 Msa0960740:CDS 25.0%
! CTTTCTTAGAAAAAAGCAAA+GGG - chr6_3:80749563-80749582 None:intergenic 25.0%
! ACTTTCTTAGAAAAAAGCAA+AGG - chr6_3:80749564-80749583 None:intergenic 25.0%
!!! TTTAAGGTTTTTCTCAATTG+GGG + chr6_3:80749771-80749790 Msa0960740:intron 25.0%
!!! TTTTAAGGTTTTTTCAGTTG+GGG + chr6_3:80749926-80749945 Msa0960740:intron 25.0%
!!! TAATCTAACTTTGTTTTGTG+TGG + chr6_3:80750152-80750171 Msa0960740:intron 25.0%
!! CCATTCTTTTTGTATCTATA+AGG - chr6_3:80750202-80750221 None:intergenic 25.0%
! CCTTATAGATACAAAAAGAA+TGG + chr6_3:80750199-80750218 Msa0960740:CDS 25.0%
! TGAACATAAGAAGAAGAAAA+TGG + chr6_3:80750593-80750612 Msa0960740:CDS 25.0%
! GAACATAAGAAGAAGAAAAT+GGG + chr6_3:80750594-80750613 Msa0960740:CDS 25.0%
!!! AAAAAAGTATTATGTCTGAG+CGG - chr6_3:80750736-80750755 None:intergenic 25.0%
! AGATGAATTGACATTTGAAT+AGG - chr6_3:80750840-80750859 None:intergenic 25.0%
!! ACCAATTCAATCTAAGTTTT+AGG + chr6_3:80751033-80751052 Msa0960740:exon 25.0%
! ACCTAAAACTTAGATTGAAT+TGG - chr6_3:80751037-80751056 None:intergenic 25.0%
!!! TTTTAGGTTGTGTAAATTGT+AGG + chr6_3:80751049-80751068 Msa0960740:three_prime_UTR 25.0%
! GTAATCAAAAGTCAAGAATT+TGG + chr6_3:80751145-80751164 Msa0960740:three_prime_UTR 25.0%
!! TTTTCAATTTTGCTTGAGTT+AGG + chr6_3:80751208-80751227 Msa0960740:three_prime_UTR 25.0%
!!! ATGGGCACATTTTTTTTTTA+AGG + chr6_3:80751439-80751458 Msa0960740:three_prime_UTR 25.0%
! AACCAACAAAAGAATTGTAA+TGG + chr6_3:80749497-80749516 Msa0960740:CDS 25.0%
! ACCAACAAAAGAATTGTAAT+GGG + chr6_3:80749498-80749517 Msa0960740:CDS 25.0%
! CTTTCTTAGAAAAAAGCAAA+GGG - chr6_3:80749563-80749582 None:intergenic 25.0%
! ACTTTCTTAGAAAAAAGCAA+AGG - chr6_3:80749564-80749583 None:intergenic 25.0%
!!! TTTAAGGTTTTTCTCAATTG+GGG + chr6_3:80749771-80749790 Msa0960740:intron 25.0%
!!! TTTTAAGGTTTTTTCAGTTG+GGG + chr6_3:80749926-80749945 Msa0960740:intron 25.0%
!!! TAATCTAACTTTGTTTTGTG+TGG + chr6_3:80750152-80750171 Msa0960740:intron 25.0%
!! CCATTCTTTTTGTATCTATA+AGG - chr6_3:80750202-80750221 None:intergenic 25.0%
! CCTTATAGATACAAAAAGAA+TGG + chr6_3:80750199-80750218 Msa0960740:CDS 25.0%
! TGAACATAAGAAGAAGAAAA+TGG + chr6_3:80750593-80750612 Msa0960740:CDS 25.0%
! GAACATAAGAAGAAGAAAAT+GGG + chr6_3:80750594-80750613 Msa0960740:CDS 25.0%
!!! AAAAAAGTATTATGTCTGAG+CGG - chr6_3:80750736-80750755 None:intergenic 25.0%
! AGATGAATTGACATTTGAAT+AGG - chr6_3:80750840-80750859 None:intergenic 25.0%
!! ACCAATTCAATCTAAGTTTT+AGG + chr6_3:80751033-80751052 Msa0960740:exon 25.0%
! ACCTAAAACTTAGATTGAAT+TGG - chr6_3:80751037-80751056 None:intergenic 25.0%
!!! TTTTAGGTTGTGTAAATTGT+AGG + chr6_3:80751049-80751068 Msa0960740:three_prime_UTR 25.0%
! GTAATCAAAAGTCAAGAATT+TGG + chr6_3:80751145-80751164 Msa0960740:three_prime_UTR 25.0%
!! TTTTCAATTTTGCTTGAGTT+AGG + chr6_3:80751208-80751227 Msa0960740:three_prime_UTR 25.0%
!!! ATGGGCACATTTTTTTTTTA+AGG + chr6_3:80751439-80751458 Msa0960740:three_prime_UTR 25.0%
! ACCCATTACAATTCTTTTGT+TGG - chr6_3:80749502-80749521 None:intergenic 30.0%
!! TAATGGGTCTTTTACTTTCA+AGG + chr6_3:80749514-80749533 Msa0960740:CDS 30.0%
! TCTTTTACTTTCAAGGTCTT+TGG + chr6_3:80749521-80749540 Msa0960740:CDS 30.0%
!!! TGATTTTTTCCCTCAACAAT+TGG + chr6_3:80749590-80749609 Msa0960740:CDS 30.0%
TCATATTCTCCAATTGTTGA+GGG - chr6_3:80749602-80749621 None:intergenic 30.0%
ATCATATTCTCCAATTGTTG+AGG - chr6_3:80749603-80749622 None:intergenic 30.0%
ATTGGAGAATATGATGTGTT+TGG + chr6_3:80749608-80749627 Msa0960740:CDS 30.0%
CAATTGGGTTTCTTAAAGTT+TGG + chr6_3:80749859-80749878 Msa0960740:intron 30.0%
! TTGTTTGGAATTGTAGATGA+TGG + chr6_3:80749889-80749908 Msa0960740:intron 30.0%
TTCATTGTTGAATCATTGGA+AGG + chr6_3:80750064-80750083 Msa0960740:intron 30.0%
!!! ACTTTGTTTTGTGTGGTTTT+TGG + chr6_3:80750159-80750178 Msa0960740:intron 30.0%
AAAGAATGGAACTCAAGAAA+AGG + chr6_3:80750213-80750232 Msa0960740:CDS 30.0%
AACTCAAGAAAAGGAAATAG+AGG + chr6_3:80750222-80750241 Msa0960740:CDS 30.0%
!! TCTTTTGATTAGTGCTCAAA+AGG + chr6_3:80750246-80750265 Msa0960740:CDS 30.0%
!! CTTTTGATTAGTGCTCAAAA+GGG + chr6_3:80750247-80750266 Msa0960740:CDS 30.0%
! TGTTTTCTTGCAGAGTAATT+TGG + chr6_3:80750474-80750493 Msa0960740:intron 30.0%
! GTTTTCTTGCAGAGTAATTT+GGG + chr6_3:80750475-80750494 Msa0960740:intron 30.0%
ATATATCCTTCATGCATAGT+GGG - chr6_3:80750529-80750548 None:intergenic 30.0%
CTTCTTCTTATGTTCATTTC+TGG - chr6_3:80750589-80750608 None:intergenic 30.0%
TTTGTAGATTCCAAAAGCAA+GGG - chr6_3:80751081-80751100 None:intergenic 30.0%
!! AGAAGCACTCAAAAGATATT+AGG + chr6_3:80751111-80751130 Msa0960740:three_prime_UTR 30.0%
GAATTCTTAGAGTGTAATTG+AGG + chr6_3:80751247-80751266 Msa0960740:three_prime_UTR 30.0%
! GAATTGACTTTGTACATCTA+CGG - chr6_3:80751294-80751313 None:intergenic 30.0%
! ACCCATTACAATTCTTTTGT+TGG - chr6_3:80749502-80749521 None:intergenic 30.0%
!! TAATGGGTCTTTTACTTTCA+AGG + chr6_3:80749514-80749533 Msa0960740:CDS 30.0%
! TCTTTTACTTTCAAGGTCTT+TGG + chr6_3:80749521-80749540 Msa0960740:CDS 30.0%
!!! TGATTTTTTCCCTCAACAAT+TGG + chr6_3:80749590-80749609 Msa0960740:CDS 30.0%
TCATATTCTCCAATTGTTGA+GGG - chr6_3:80749602-80749621 None:intergenic 30.0%
ATCATATTCTCCAATTGTTG+AGG - chr6_3:80749603-80749622 None:intergenic 30.0%
ATTGGAGAATATGATGTGTT+TGG + chr6_3:80749608-80749627 Msa0960740:CDS 30.0%
CAATTGGGTTTCTTAAAGTT+TGG + chr6_3:80749859-80749878 Msa0960740:intron 30.0%
! TTGTTTGGAATTGTAGATGA+TGG + chr6_3:80749889-80749908 Msa0960740:intron 30.0%
TTCATTGTTGAATCATTGGA+AGG + chr6_3:80750064-80750083 Msa0960740:intron 30.0%
!!! ACTTTGTTTTGTGTGGTTTT+TGG + chr6_3:80750159-80750178 Msa0960740:intron 30.0%
AAAGAATGGAACTCAAGAAA+AGG + chr6_3:80750213-80750232 Msa0960740:CDS 30.0%
AACTCAAGAAAAGGAAATAG+AGG + chr6_3:80750222-80750241 Msa0960740:CDS 30.0%
!! TCTTTTGATTAGTGCTCAAA+AGG + chr6_3:80750246-80750265 Msa0960740:CDS 30.0%
!! CTTTTGATTAGTGCTCAAAA+GGG + chr6_3:80750247-80750266 Msa0960740:CDS 30.0%
! TGTTTTCTTGCAGAGTAATT+TGG + chr6_3:80750474-80750493 Msa0960740:intron 30.0%
! GTTTTCTTGCAGAGTAATTT+GGG + chr6_3:80750475-80750494 Msa0960740:intron 30.0%
ATATATCCTTCATGCATAGT+GGG - chr6_3:80750529-80750548 None:intergenic 30.0%
CTTCTTCTTATGTTCATTTC+TGG - chr6_3:80750589-80750608 None:intergenic 30.0%
TTTGTAGATTCCAAAAGCAA+GGG - chr6_3:80751081-80751100 None:intergenic 30.0%
!! AGAAGCACTCAAAAGATATT+AGG + chr6_3:80751111-80751130 Msa0960740:three_prime_UTR 30.0%
GAATTCTTAGAGTGTAATTG+AGG + chr6_3:80751247-80751266 Msa0960740:three_prime_UTR 30.0%
! GAATTGACTTTGTACATCTA+CGG - chr6_3:80751294-80751313 None:intergenic 30.0%
! GTTGATGAGAAAAAGAAGAG+AGG - chr6_3:80749469-80749488 None:intergenic 35.0%
CATTTGCAACGTTATGAACA+AGG + chr6_3:80749651-80749670 Msa0960740:CDS 35.0%
TTGGGAAAAAGATGAAACCA+TGG + chr6_3:80750297-80750316 Msa0960740:CDS 35.0%
AATAACACCAGCTTCTTCTA+TGG - chr6_3:80750344-80750363 None:intergenic 35.0%
!! ATAGAAGAAGCTGGTGTTAT+TGG + chr6_3:80750343-80750362 Msa0960740:CDS 35.0%
GATTCTTACTCTGTGTACTA+TGG + chr6_3:80750450-80750469 Msa0960740:intron 35.0%
TGCAGAGTAATTTGGGTAAA+TGG + chr6_3:80750482-80750501 Msa0960740:intron 35.0%
CATATATCCTTCATGCATAG+TGG - chr6_3:80750530-80750549 None:intergenic 35.0%
TTAGCAAGGAGTTGGATAAT+TGG + chr6_3:80750563-80750582 Msa0960740:CDS 35.0%
AAGAAATATGCCCATATGCT+TGG + chr6_3:80750974-80750993 Msa0960740:CDS 35.0%
!! GAAGGAAGCTTTAGATGAAT+TGG + chr6_3:80750999-80751018 Msa0960740:CDS 35.0%
CTTTGTAGATTCCAAAAGCA+AGG - chr6_3:80751082-80751101 None:intergenic 35.0%
!!! TGCTTTTGGAATCTACAAAG+TGG + chr6_3:80751082-80751101 Msa0960740:three_prime_UTR 35.0%
! TTGCTATTCTCTCACTTTGA+TGG + chr6_3:80751420-80751439 Msa0960740:three_prime_UTR 35.0%
TGCTATTCTCTCACTTTGAT+GGG + chr6_3:80751421-80751440 Msa0960740:three_prime_UTR 35.0%
! GTTGATGAGAAAAAGAAGAG+AGG - chr6_3:80749469-80749488 None:intergenic 35.0%
CATTTGCAACGTTATGAACA+AGG + chr6_3:80749651-80749670 Msa0960740:CDS 35.0%
TTGGGAAAAAGATGAAACCA+TGG + chr6_3:80750297-80750316 Msa0960740:CDS 35.0%
AATAACACCAGCTTCTTCTA+TGG - chr6_3:80750344-80750363 None:intergenic 35.0%
!! ATAGAAGAAGCTGGTGTTAT+TGG + chr6_3:80750343-80750362 Msa0960740:CDS 35.0%
GATTCTTACTCTGTGTACTA+TGG + chr6_3:80750450-80750469 Msa0960740:intron 35.0%
TGCAGAGTAATTTGGGTAAA+TGG + chr6_3:80750482-80750501 Msa0960740:intron 35.0%
CATATATCCTTCATGCATAG+TGG - chr6_3:80750530-80750549 None:intergenic 35.0%
TTAGCAAGGAGTTGGATAAT+TGG + chr6_3:80750563-80750582 Msa0960740:CDS 35.0%
AAGAAATATGCCCATATGCT+TGG + chr6_3:80750974-80750993 Msa0960740:CDS 35.0%
!! GAAGGAAGCTTTAGATGAAT+TGG + chr6_3:80750999-80751018 Msa0960740:CDS 35.0%
CTTTGTAGATTCCAAAAGCA+AGG - chr6_3:80751082-80751101 None:intergenic 35.0%
!!! TGCTTTTGGAATCTACAAAG+TGG + chr6_3:80751082-80751101 Msa0960740:three_prime_UTR 35.0%
! TTGCTATTCTCTCACTTTGA+TGG + chr6_3:80751420-80751439 Msa0960740:three_prime_UTR 35.0%
TGCTATTCTCTCACTTTGAT+GGG + chr6_3:80751421-80751440 Msa0960740:three_prime_UTR 35.0%
! TGTTTGGTTTCTCCTAGAAC+TGG + chr6_3:80749624-80749643 Msa0960740:CDS 40.0%
TGCAAATGTCTACCAGTTCT+AGG - chr6_3:80749639-80749658 None:intergenic 40.0%
ATTAGTGCTCAAAAGGGTAG+TGG + chr6_3:80750253-80750272 Msa0960740:CDS 40.0%
! TCTTAAAGCAGCTTGTTCCA+TGG - chr6_3:80750317-80750336 None:intergenic 40.0%
AGAGAAACCATAGAAGAAGC+TGG + chr6_3:80750334-80750353 Msa0960740:CDS 40.0%
ACTCCTTGCTAACAAGCAAA+GGG - chr6_3:80750555-80750574 None:intergenic 40.0%
AACTCCTTGCTAACAAGCAA+AGG - chr6_3:80750556-80750575 None:intergenic 40.0%
! TTTGCTTGTTAGCAAGGAGT+TGG + chr6_3:80750555-80750574 Msa0960740:CDS 40.0%
ATGACACTTGATTAGGCTCA+AGG - chr6_3:80750801-80750820 None:intergenic 40.0%
TGTAATCATGCAGTTGACTG+TGG + chr6_3:80750942-80750961 Msa0960740:intron 40.0%
CTTCCTTCATCCAAGCATAT+GGG - chr6_3:80750987-80751006 None:intergenic 40.0%
TTGACTTTGTACATCTACGG+TGG - chr6_3:80751291-80751310 None:intergenic 40.0%
! TGTTTGGTTTCTCCTAGAAC+TGG + chr6_3:80749624-80749643 Msa0960740:CDS 40.0%
TGCAAATGTCTACCAGTTCT+AGG - chr6_3:80749639-80749658 None:intergenic 40.0%
ATTAGTGCTCAAAAGGGTAG+TGG + chr6_3:80750253-80750272 Msa0960740:CDS 40.0%
! TCTTAAAGCAGCTTGTTCCA+TGG - chr6_3:80750317-80750336 None:intergenic 40.0%
AGAGAAACCATAGAAGAAGC+TGG + chr6_3:80750334-80750353 Msa0960740:CDS 40.0%
ACTCCTTGCTAACAAGCAAA+GGG - chr6_3:80750555-80750574 None:intergenic 40.0%
AACTCCTTGCTAACAAGCAA+AGG - chr6_3:80750556-80750575 None:intergenic 40.0%
! TTTGCTTGTTAGCAAGGAGT+TGG + chr6_3:80750555-80750574 Msa0960740:CDS 40.0%
ATGACACTTGATTAGGCTCA+AGG - chr6_3:80750801-80750820 None:intergenic 40.0%
TGTAATCATGCAGTTGACTG+TGG + chr6_3:80750942-80750961 Msa0960740:intron 40.0%
CTTCCTTCATCCAAGCATAT+GGG - chr6_3:80750987-80751006 None:intergenic 40.0%
TTGACTTTGTACATCTACGG+TGG - chr6_3:80751291-80751310 None:intergenic 40.0%
! ACAAGGATGTCGTCAAGTTG+TGG + chr6_3:80749668-80749687 Msa0960740:CDS 45.0%
! CAAGGATGTCGTCAAGTTGT+GGG + chr6_3:80749669-80749688 Msa0960740:CDS 45.0%
! AAGGATGTCGTCAAGTTGTG+GGG + chr6_3:80749670-80749689 Msa0960740:CDS 45.0%
! TCTTTTTCCCAACCCCCTTT+CGG - chr6_3:80750289-80750308 None:intergenic 45.0%
!! ATCCTTCATGCATAGTGGGT+TGG - chr6_3:80750525-80750544 None:intergenic 45.0%
! GTTCCCTTTGCTTGTTAGCA+AGG + chr6_3:80750549-80750568 Msa0960740:CDS 45.0%
ATGCCCATATGCTTGGATGA+AGG + chr6_3:80750981-80751000 Msa0960740:CDS 45.0%
GCTTCCTTCATCCAAGCATA+TGG - chr6_3:80750988-80751007 None:intergenic 45.0%
! TAGGCATTCTCCCTTGCTTT+TGG + chr6_3:80751068-80751087 Msa0960740:three_prime_UTR 45.0%
TCTACGGTGGATCACTTCTA+AGG - chr6_3:80751278-80751297 None:intergenic 45.0%
! ACAAGGATGTCGTCAAGTTG+TGG + chr6_3:80749668-80749687 Msa0960740:CDS 45.0%
! CAAGGATGTCGTCAAGTTGT+GGG + chr6_3:80749669-80749688 Msa0960740:CDS 45.0%
! AAGGATGTCGTCAAGTTGTG+GGG + chr6_3:80749670-80749689 Msa0960740:CDS 45.0%
! TCTTTTTCCCAACCCCCTTT+CGG - chr6_3:80750289-80750308 None:intergenic 45.0%
!! ATCCTTCATGCATAGTGGGT+TGG - chr6_3:80750525-80750544 None:intergenic 45.0%
! GTTCCCTTTGCTTGTTAGCA+AGG + chr6_3:80750549-80750568 Msa0960740:CDS 45.0%
ATGCCCATATGCTTGGATGA+AGG + chr6_3:80750981-80751000 Msa0960740:CDS 45.0%
GCTTCCTTCATCCAAGCATA+TGG - chr6_3:80750988-80751007 None:intergenic 45.0%
! TAGGCATTCTCCCTTGCTTT+TGG + chr6_3:80751068-80751087 Msa0960740:three_prime_UTR 45.0%
TCTACGGTGGATCACTTCTA+AGG - chr6_3:80751278-80751297 None:intergenic 45.0%
AGTGGAATGCAGTTCCCGAA+AGG + chr6_3:80750271-80750290 Msa0960740:CDS 50.0%
GTGGAATGCAGTTCCCGAAA+GGG + chr6_3:80750272-80750291 Msa0960740:CDS 50.0%
TGGAATGCAGTTCCCGAAAG+GGG + chr6_3:80750273-80750292 Msa0960740:CDS 50.0%
! CTTTTTCCCAACCCCCTTTC+GGG - chr6_3:80750288-80750307 None:intergenic 50.0%
TTATGTCGCAGCGCAGATTG+AGG + chr6_3:80750754-80750773 Msa0960740:intron 50.0%
AGTGGAATGCAGTTCCCGAA+AGG + chr6_3:80750271-80750290 Msa0960740:CDS 50.0%
GTGGAATGCAGTTCCCGAAA+GGG + chr6_3:80750272-80750291 Msa0960740:CDS 50.0%
TGGAATGCAGTTCCCGAAAG+GGG + chr6_3:80750273-80750292 Msa0960740:CDS 50.0%
! CTTTTTCCCAACCCCCTTTC+GGG - chr6_3:80750288-80750307 None:intergenic 50.0%
TTATGTCGCAGCGCAGATTG+AGG + chr6_3:80750754-80750773 Msa0960740:intron 50.0%
GGAATGCAGTTCCCGAAAGG+GGG + chr6_3:80750274-80750293 Msa0960740:CDS 55.0%
CGCCAACCCACTATGCATGA+AGG + chr6_3:80750520-80750539 Msa0960740:CDS 55.0%
TGTCTGAGCGGCTACGATTG+AGG - chr6_3:80750724-80750743 None:intergenic 55.0%
GGAATGCAGTTCCCGAAAGG+GGG + chr6_3:80750274-80750293 Msa0960740:CDS 55.0%
CGCCAACCCACTATGCATGA+AGG + chr6_3:80750520-80750539 Msa0960740:CDS 55.0%
TGTCTGAGCGGCTACGATTG+AGG - chr6_3:80750724-80750743 None:intergenic 55.0%
TGCAGTTCCCGAAAGGGGGT+TGG + chr6_3:80750278-80750297 Msa0960740:CDS 60.0%
GCAGTTCCCGAAAGGGGGTT+GGG + chr6_3:80750279-80750298 Msa0960740:CDS 60.0%
TGCAGTTCCCGAAAGGGGGT+TGG + chr6_3:80750278-80750297 Msa0960740:CDS 60.0%
GCAGTTCCCGAAAGGGGGTT+GGG + chr6_3:80750279-80750298 Msa0960740:CDS 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 80749375 80751471 80749375 ID=Msa0960740;Name=Msa0960740
chr6_3 mRNA 80749375 80751471 80749375 ID=Msa0960740-mRNA-1;Parent=Msa0960740;Name=Msa0960740-mRNA-1;_AED=0.15;_eAED=0.15;_QI=36|1|1|1|1|1|4|424|228
chr6_3 exon 80749375 80749691 80749375 ID=Msa0960740-mRNA-1:exon:14487;Parent=Msa0960740-mRNA-1
chr6_3 exon 80750192 80750375 80750192 ID=Msa0960740-mRNA-1:exon:14488;Parent=Msa0960740-mRNA-1
chr6_3 exon 80750487 80750615 80750487 ID=Msa0960740-mRNA-1:exon:14489;Parent=Msa0960740-mRNA-1
chr6_3 exon 80750955 80751471 80750955 ID=Msa0960740-mRNA-1:exon:14490;Parent=Msa0960740-mRNA-1
chr6_3 five_prime_UTR 80749375 80749410 80749375 ID=Msa0960740-mRNA-1:five_prime_utr;Parent=Msa0960740-mRNA-1
chr6_3 CDS 80749411 80749691 80749411 ID=Msa0960740-mRNA-1:cds;Parent=Msa0960740-mRNA-1
chr6_3 CDS 80750192 80750375 80750192 ID=Msa0960740-mRNA-1:cds;Parent=Msa0960740-mRNA-1
chr6_3 CDS 80750487 80750615 80750487 ID=Msa0960740-mRNA-1:cds;Parent=Msa0960740-mRNA-1
chr6_3 CDS 80750955 80751047 80750955 ID=Msa0960740-mRNA-1:cds;Parent=Msa0960740-mRNA-1
chr6_3 three_prime_UTR 80751048 80751471 80751048 ID=Msa0960740-mRNA-1:three_prime_utr;Parent=Msa0960740-mRNA-1
Gene Sequence

>Msa0960740

ATGTTGATGTCTGTTATTACTTCTTCACAACAAACTCATCAATTTCTTCTTATTACCTCTCTTCTTTTTCTCATCAACGAAATCAAAACCAACAAAAGAATTGTAATGGGTCTTTTACTTTCAAGGTCTTTGGCTTGTAAATTCTTTTACCCTTTGCTTTTTTCTAAGAAAGTTCATAATGATTTTTTCCCTCAACAATTGGAGAATATGATGTGTTTGGTTTCTCCTAGAACTGGTAGACATTTGCAACGTTATGAACAAGGATGTCGTCAAGTTGTGGGATGCATACCTTATAGATACAAAAAGAATGGAACTCAAGAAAAGGAAATAGAGGTTCTTTTGATTAGTGCTCAAAAGGGTAGTGGAATGCAGTTCCCGAAAGGGGGTTGGGAAAAAGATGAAACCATGGAACAAGCTGCTTTAAGAGAAACCATAGAAGAAGCTGGTGTTATTGGAAGTGTTGAAAGTAATTTGGGTAAATGGTACTATAAGAGCAAGCGCCAACCCACTATGCATGAAGGATATATGTTCCCTTTGCTTGTTAGCAAGGAGTTGGATAATTGGCCAGAAATGAACATAAGAAGAAGAAAATGGTTGACTGTGGATGAAGCAAAAGAAATATGCCCATATGCTTGGATGAAGGAAGCTTTAGATGAATTGGTTAGTAGACAAACCAATTCAATCTAA

Protein sequence

>Msa0960740

MLMSVITSSQQTHQFLLITSLLFLINEIKTNKRIVMGLLLSRSLACKFFYPLLFSKKVHNDFFPQQLENMMCLVSPRTGRHLQRYEQGCRQVVGCIPYRYKKNGTQEKEIEVLLISAQKGSGMQFPKGGWEKDETMEQAALRETIEEAGVIGSVESNLGKWYYKSKRQPTMHEGYMFPLLVSKELDNWPEMNIRRRKWLTVDEAKEICPYAWMKEALDELVSRQTNSI*