AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1026940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1026940 MtrunA17_Chr7g0245231 98.830 171 2 0 1 171 1 171 1.66e-123 344
Msa1026940 MtrunA17_Chr6g0450921 92.308 169 13 0 3 171 2 170 6.20e-114 320
Msa1026940 MtrunA17_Chr3g0093271 41.463 164 96 0 1 164 34 197 3.78e-39 132
Msa1026940 MtrunA17_Chr3g0093271 46.970 66 35 0 29 94 135 200 5.91e-12 61.2
Msa1026940 MtrunA17_Chr5g0440931 44.755 143 79 0 22 164 4 146 7.83e-39 129
Msa1026940 MtrunA17_Chr5g0440931 46.970 66 35 0 29 94 84 149 2.66e-12 61.2
Msa1026940 MtrunA17_Chr6g0460211 44.755 143 79 0 22 164 4 146 1.85e-38 128
Msa1026940 MtrunA17_Chr6g0460211 46.970 66 35 0 29 94 84 149 2.80e-12 61.2
Msa1026940 MtrunA17_Chr1g0188171 43.151 146 83 0 21 166 3 148 2.03e-38 128
Msa1026940 MtrunA17_Chr7g0254731 44.056 143 80 0 22 164 4 146 5.08e-38 127
Msa1026940 MtrunA17_Chr7g0254731 48.485 66 34 0 29 94 84 149 5.52e-13 63.2
Msa1026940 MtrunA17_Chr1g0166281 44.521 146 81 0 23 168 5 150 3.83e-37 125
Msa1026940 MtrunA17_Chr1g0185001 38.776 147 87 2 21 165 3 148 4.51e-28 102
Msa1026940 MtrunA17_Chr1g0185001 41.667 72 38 1 20 91 78 145 6.06e-11 57.8
Msa1026940 MtrunA17_Chr1g0161211 37.410 139 87 0 26 164 42 180 5.07e-23 90.5
Msa1026940 MtrunA17_Chr7g0267751 34.965 143 90 2 22 164 432 571 2.48e-22 92.8
Msa1026940 MtrunA17_Chr7g0274101 36.986 146 92 0 22 167 4 149 4.75e-22 86.7
Msa1026940 MtrunA17_Chr1g0176751 35.417 144 90 2 22 165 421 561 9.81e-22 91.3
Msa1026940 MtrunA17_Chr8g0391691 35.915 142 90 1 30 171 36 176 1.02e-21 87.0
Msa1026940 MtrunA17_Chr8g0391691 49.153 59 30 0 29 87 108 166 2.61e-13 64.7
Msa1026940 MtrunA17_Chr4g0033601 32.394 142 94 1 30 169 5 146 2.82e-21 84.7
Msa1026940 MtrunA17_Chr3g0111371 36.429 140 85 2 28 167 3 138 5.78e-21 83.6
Msa1026940 MtrunA17_Chr3g0111371 38.961 77 47 0 16 92 60 136 2.36e-12 61.2
Msa1026940 MtrunA17_Chr8g0385341 36.620 142 87 2 23 164 328 466 1.09e-20 88.2
Msa1026940 MtrunA17_Chr7g0245911 36.986 146 83 4 30 166 47 192 1.59e-20 84.0
Msa1026940 MtrunA17_Chr8g0392951 34.559 136 88 1 30 165 24 158 1.77e-20 83.2
Msa1026940 MtrunA17_Chr5g0434951 34.815 135 87 1 30 164 4 137 3.87e-20 81.6
Msa1026940 MtrunA17_Chr3g0131181 35.915 142 88 2 23 164 327 465 4.08e-20 86.3
Msa1026940 MtrunA17_Chr8g0366401 29.114 158 109 1 15 169 2 159 6.43e-20 81.6
Msa1026940 MtrunA17_Chr8g0351681 36.364 143 83 3 30 164 49 191 9.12e-20 82.0
Msa1026940 MtrunA17_Chr5g0444171 36.913 149 84 4 22 166 389 531 1.12e-19 85.1
Msa1026940 MtrunA17_Chr5g0397101 33.803 142 92 2 23 164 364 503 2.87e-19 84.0
Msa1026940 MtrunA17_Chr8g0387671 34.266 143 92 2 22 164 363 503 3.59e-19 83.6
Msa1026940 MtrunA17_Chr5g0398751 29.577 142 98 1 23 164 5 144 1.60e-18 77.4
Msa1026940 MtrunA17_Chr1g0200601 32.394 142 93 2 23 164 328 466 2.03e-18 81.6
Msa1026940 MtrunA17_Chr5g0448721 32.394 142 93 2 23 164 394 532 4.97e-18 80.5
Msa1026940 MtrunA17_Chr1g0170281 33.099 142 92 2 23 164 416 554 8.70e-18 79.7
Msa1026940 MtrunA17_Chr4g0062221 30.657 137 93 2 30 164 11 147 9.64e-18 75.9
Msa1026940 MtrunA17_Chr0c02g0489761 34.266 143 90 3 23 164 376 515 1.09e-17 79.3
Msa1026940 MtrunA17_Chr5g0441691 32.867 143 92 3 23 164 366 505 1.99e-17 78.6
Msa1026940 MtrunA17_Chr1g0169581 31.387 137 92 1 30 164 4 140 3.12e-17 73.9
Msa1026940 MtrunA17_Chr1g0169581 39.394 66 40 0 27 92 76 141 1.10e-11 59.3
Msa1026940 MtrunA17_Chr4g0044961 31.013 158 106 2 14 171 41 195 3.38e-17 75.1
Msa1026940 MtrunA17_Chr4g0059951 33.113 151 97 4 22 170 370 518 4.86e-17 77.8
Msa1026940 MtrunA17_Chr4g0074811 33.562 146 93 3 22 166 388 530 5.26e-17 77.4
Msa1026940 MtrunA17_Chr7g0256701 31.081 148 97 3 23 165 66 213 2.76e-16 73.2
Msa1026940 MtrunA17_Chr1g0157131 33.103 145 91 3 22 164 371 511 3.94e-16 75.1
Msa1026940 MtrunA17_Chr8g0373691 31.690 142 95 2 24 164 47 187 4.69e-16 72.0
Msa1026940 MtrunA17_Chr7g0256171 31.690 142 95 1 30 169 5 146 1.38e-15 70.1
Msa1026940 MtrunA17_Chr5g0402331 34.028 144 90 4 25 165 43 184 1.92e-15 70.5
Msa1026940 MtrunA17_Chr8g0368681 26.573 143 103 1 24 164 6 148 2.02e-15 69.7
Msa1026940 MtrunA17_Chr3g0098951 33.548 155 88 5 22 166 380 529 5.96e-15 71.6
Msa1026940 MtrunA17_Chr5g0402361 34.028 144 90 4 25 165 215 356 1.30e-14 70.1
Msa1026940 MtrunA17_Chr5g0402361 29.651 172 93 2 27 170 117 288 1.42e-14 70.1
Msa1026940 MtrunA17_Chr5g0402361 33.099 142 93 2 25 165 43 183 1.90e-14 69.7
Msa1026940 MtrunA17_Chr7g0242561 30.201 149 102 2 23 170 354 501 1.49e-14 70.5
Msa1026940 MtrunA17_Chr7g0245371 29.333 150 92 3 31 167 25 173 1.58e-14 67.8
Msa1026940 MtrunA17_Chr6g0482731 43.077 65 37 0 31 95 100 164 4.94e-14 66.2
Msa1026940 MtrunA17_Chr6g0482731 29.932 147 93 3 30 171 26 167 5.61e-12 60.8
Msa1026940 MtrunA17_Chr2g0329371 29.167 144 98 2 30 169 64 207 1.44e-13 65.9
Msa1026940 MtrunA17_Chr3g0116151 31.250 128 87 1 38 165 14 140 4.59e-13 63.2
Msa1026940 MtrunA17_Chr3g0116141 31.250 128 87 1 38 165 13 139 4.64e-13 63.2
Msa1026940 MtrunA17_Chr7g0225921 29.496 139 96 2 27 164 3 140 4.78e-13 63.2
Msa1026940 MtrunA17_Chr3g0100541 30.137 146 87 1 23 168 45 175 7.15e-13 63.5
Msa1026940 MtrunA17_Chr4g0057651 29.286 140 98 1 26 165 2 140 1.12e-12 62.0
Msa1026940 MtrunA17_Chr3g0100511 29.787 141 84 1 23 163 45 170 3.22e-12 61.6
Msa1026940 MtrunA17_Chr3g0121191 41.176 68 40 0 24 91 150 217 4.87e-12 62.0
Msa1026940 MtrunA17_Chr4g0064231 28.750 160 94 4 28 168 62 220 4.95e-12 62.0
Msa1026940 MtrunA17_Chr4g0057641 29.630 135 94 1 30 164 6 139 1.18e-11 59.3
Msa1026940 MtrunA17_Chr6g0459231 29.771 131 91 1 34 164 12 141 1.31e-11 59.3
Msa1026940 MtrunA17_Chr4g0074791 33.577 137 77 4 31 166 401 524 1.35e-11 62.0
Msa1026940 MtrunA17_Chr4g0057661 29.412 136 95 1 30 165 6 140 2.40e-11 58.5
Msa1026940 MtrunA17_Chr1g0176421 27.692 130 91 2 22 151 458 584 3.91e-11 60.5
Msa1026940 MtrunA17_Chr1g0173541 28.477 151 104 4 22 170 349 497 5.60e-11 60.1
Msa1026940 MtrunA17_Chr3g0100561 30.216 139 82 1 23 161 45 168 5.84e-11 58.2
Msa1026940 MtrunA17_Chr1g0169621 38.806 67 41 0 27 93 101 167 9.97e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1026940 AT3G50360.1 75.449 167 39 1 3 169 2 166 3.29e-82 240
Msa1026940 AT4G37010.2 63.871 155 55 1 16 169 16 170 2.06e-65 198
Msa1026940 AT4G37010.1 63.871 155 55 1 16 169 12 166 2.46e-65 197
Msa1026940 AT1G66410.1 44.755 143 79 0 22 164 4 146 3.37e-39 130
Msa1026940 AT1G66410.1 48.485 66 34 0 29 94 84 149 1.03e-12 62.8
Msa1026940 AT5G37780.1 44.755 143 79 0 22 164 4 146 3.37e-39 130
Msa1026940 AT5G37780.1 48.485 66 34 0 29 94 84 149 1.03e-12 62.8
Msa1026940 AT3G56800.1 44.755 143 79 0 22 164 4 146 1.50e-38 129
Msa1026940 AT3G56800.1 46.970 66 35 0 29 94 84 149 2.79e-12 61.6
Msa1026940 AT2G41110.1 44.755 143 79 0 22 164 4 146 1.50e-38 129
Msa1026940 AT2G41110.1 46.970 66 35 0 29 94 84 149 2.79e-12 61.6
Msa1026940 AT2G27030.1 44.755 143 79 0 22 164 4 146 1.50e-38 129
Msa1026940 AT2G27030.1 46.970 66 35 0 29 94 84 149 2.79e-12 61.6
Msa1026940 AT2G27030.3 44.755 143 79 0 22 164 4 146 2.06e-38 130
Msa1026940 AT2G27030.3 46.970 66 35 0 29 94 84 149 1.94e-12 62.8
Msa1026940 AT3G43810.1 44.755 143 79 0 22 164 4 146 2.55e-38 128
Msa1026940 AT3G43810.1 46.970 66 35 0 29 94 84 149 3.86e-12 61.2
Msa1026940 AT3G43810.2 45.070 142 78 0 23 164 5 146 5.92e-38 129
Msa1026940 AT3G43810.2 46.154 65 35 0 29 93 84 148 1.57e-11 60.8
Msa1026940 AT5G21274.1 44.056 143 80 0 22 164 4 146 8.44e-38 127
Msa1026940 AT5G21274.1 45.455 66 36 0 29 94 84 149 1.22e-11 59.7
Msa1026940 AT3G22930.1 42.857 147 84 0 22 168 27 173 9.10e-37 125
Msa1026940 AT5G37780.2 40.506 158 79 1 22 164 4 161 2.32e-35 121
Msa1026940 AT5G37780.2 48.485 66 34 0 29 94 99 164 1.37e-12 62.8
Msa1026940 AT2G41110.2 41.290 155 79 1 22 164 4 158 7.17e-35 120
Msa1026940 AT2G41110.2 46.970 66 35 0 29 94 96 161 3.48e-12 61.6
Msa1026940 AT4G14640.1 41.549 142 83 0 23 164 6 147 2.41e-34 118
Msa1026940 AT5G37780.3 37.870 169 79 1 22 164 4 172 1.83e-33 117
Msa1026940 AT5G37780.3 48.485 66 34 0 29 94 110 175 1.48e-12 62.8
Msa1026940 AT1G66410.2 41.830 153 79 1 22 164 4 156 2.82e-33 116
Msa1026940 AT1G66410.2 48.485 66 34 0 29 94 94 159 1.07e-12 62.8
Msa1026940 AT5G37780.4 42.623 122 70 0 43 164 12 133 9.63e-31 108
Msa1026940 AT5G37780.4 48.485 66 34 0 29 94 71 136 6.95e-13 62.8
Msa1026940 AT1G66410.4 42.727 110 63 0 55 164 1 110 3.37e-27 99.4
Msa1026940 AT1G66410.4 48.485 66 34 0 29 94 48 113 3.21e-13 63.2
Msa1026940 AT1G66410.3 42.727 110 63 0 55 164 1 110 3.37e-27 99.4
Msa1026940 AT1G66410.3 48.485 66 34 0 29 94 48 113 3.21e-13 63.2
Msa1026940 AT3G43810.4 42.727 110 63 0 55 164 1 110 1.06e-26 97.8
Msa1026940 AT3G43810.4 46.970 66 35 0 29 94 48 113 1.18e-12 61.6
Msa1026940 AT3G43810.3 42.727 110 63 0 55 164 1 110 1.06e-26 97.8
Msa1026940 AT3G43810.3 46.970 66 35 0 29 94 48 113 1.18e-12 61.6
Msa1026940 AT1G24620.1 35.185 162 99 2 9 170 21 176 1.83e-26 99.4
Msa1026940 AT4G14640.2 38.843 121 74 0 44 164 9 129 2.46e-26 97.4
Msa1026940 AT4G14640.2 50.794 63 31 0 29 91 67 129 3.47e-14 66.2
Msa1026940 AT3G22930.2 44.762 105 58 0 22 126 27 131 3.87e-26 97.1
Msa1026940 AT4G14640.3 42.718 103 59 0 23 125 6 108 1.43e-23 90.1
Msa1026940 AT5G23580.1 37.324 142 86 2 23 164 320 458 2.27e-22 93.2
Msa1026940 AT3G51920.1 34.014 147 97 0 23 169 5 151 5.68e-22 87.0
Msa1026940 AT2G41100.7 32.704 159 90 2 23 164 59 217 8.09e-22 89.7
Msa1026940 AT2G41100.7 33.654 104 66 1 10 113 136 236 1.62e-12 64.3
Msa1026940 AT2G41100.7 27.778 126 75 2 55 164 2 127 8.23e-11 59.7
Msa1026940 AT2G41100.6 32.704 159 90 2 23 164 59 217 8.09e-22 89.7
Msa1026940 AT2G41100.6 33.654 104 66 1 10 113 136 236 1.62e-12 64.3
Msa1026940 AT2G41100.6 27.778 126 75 2 55 164 2 127 8.23e-11 59.7
Msa1026940 AT2G41100.3 32.704 159 90 2 23 164 59 217 8.09e-22 89.7
Msa1026940 AT2G41100.3 33.654 104 66 1 10 113 136 236 1.62e-12 64.3
Msa1026940 AT2G41100.3 27.778 126 75 2 55 164 2 127 8.23e-11 59.7
Msa1026940 AT2G41090.1 33.333 144 93 1 21 164 3 143 1.13e-21 87.0
Msa1026940 AT2G41100.4 32.704 159 90 2 23 164 94 252 1.40e-21 89.7
Msa1026940 AT2G41100.4 31.013 158 93 2 23 164 5 162 1.25e-19 84.3
Msa1026940 AT2G41100.4 33.654 104 66 1 10 113 171 271 2.23e-12 64.3
Msa1026940 AT2G41100.1 32.704 159 90 2 23 164 94 252 1.40e-21 89.7
Msa1026940 AT2G41100.1 31.013 158 93 2 23 164 5 162 1.25e-19 84.3
Msa1026940 AT2G41100.1 33.654 104 66 1 10 113 171 271 2.23e-12 64.3
Msa1026940 AT2G43290.1 34.459 148 90 3 29 169 64 211 1.99e-21 87.0
Msa1026940 AT1G05990.1 35.664 143 89 2 30 169 5 147 3.14e-21 85.1
Msa1026940 AT1G12310.1 31.507 146 98 1 19 164 2 145 1.12e-20 83.6
Msa1026940 AT5G19360.1 35.915 142 89 2 23 164 366 505 1.15e-20 88.2
Msa1026940 AT1G18530.1 33.333 141 91 2 26 164 4 143 2.02e-20 83.2
Msa1026940 AT3G25600.1 32.609 138 91 1 29 164 11 148 3.30e-20 82.8
Msa1026940 AT5G12180.1 35.211 142 90 2 23 164 371 510 3.93e-20 87.0
Msa1026940 AT1G18210.2 33.824 136 86 1 29 164 22 153 4.73e-20 82.4
Msa1026940 AT1G18210.2 39.130 69 42 0 24 92 86 154 3.71e-11 58.9
Msa1026940 AT1G18210.1 33.824 136 86 1 29 164 22 153 4.73e-20 82.4
Msa1026940 AT1G18210.1 39.130 69 42 0 24 92 86 154 3.71e-11 58.9
Msa1026940 AT1G62820.1 31.034 145 98 1 20 164 3 145 7.59e-20 81.3
Msa1026940 AT2G36180.1 38.732 142 84 2 33 171 3 144 9.69e-20 80.9
Msa1026940 AT1G32250.1 30.065 153 101 1 23 169 9 161 1.16e-19 81.3
Msa1026940 AT4G09570.1 34.507 142 90 2 23 164 323 461 1.24e-19 85.5
Msa1026940 AT1G66400.1 33.099 142 93 1 29 168 14 155 2.80e-19 80.1
Msa1026940 AT1G35670.1 33.803 142 91 2 23 164 324 462 5.10e-19 83.6
Msa1026940 AT3G20410.2 36.429 140 83 3 29 166 395 530 1.27e-18 82.4
Msa1026940 AT3G20410.1 36.429 140 83 3 29 166 395 530 1.27e-18 82.4
Msa1026940 AT2G15680.1 31.361 169 107 2 5 166 18 184 1.30e-18 79.0
Msa1026940 AT1G73630.1 29.605 152 103 1 15 166 5 152 1.58e-18 78.2
Msa1026940 AT5G37770.1 32.867 143 92 1 30 168 17 159 1.85e-18 78.2
Msa1026940 AT5G37770.2 32.867 143 92 1 30 168 17 159 1.85e-18 78.2
Msa1026940 AT3G59440.1 30.556 144 97 2 30 171 51 193 2.82e-18 78.6
Msa1026940 AT1G76040.2 37.241 145 85 4 22 164 408 548 5.25e-18 80.9
Msa1026940 AT1G76040.1 37.241 145 85 4 22 164 170 310 5.66e-18 79.7
Msa1026940 AT1G76040.4 37.241 145 85 4 22 164 170 310 5.66e-18 79.7
Msa1026940 AT1G61950.1 33.987 153 95 3 21 171 395 543 8.21e-18 80.1
Msa1026940 AT2G17290.1 33.099 142 92 2 23 164 383 521 1.64e-17 79.3
Msa1026940 AT2G17290.2 33.099 142 92 2 23 164 383 521 1.64e-17 79.3
Msa1026940 AT4G21940.2 34.247 146 90 3 23 166 399 540 1.67e-17 79.3
Msa1026940 AT4G21940.1 34.247 146 90 3 23 166 399 540 1.88e-17 79.3
Msa1026940 AT4G04720.2 33.333 144 94 2 23 166 377 518 2.21e-17 79.0
Msa1026940 AT4G04720.1 33.333 144 94 2 23 166 377 518 2.21e-17 79.0
Msa1026940 AT1G50700.1 35.000 140 85 3 29 166 377 512 2.76e-17 78.6
Msa1026940 AT2G38910.1 31.293 147 98 2 23 169 432 575 3.00e-17 78.6
Msa1026940 AT4G38230.4 32.394 142 93 2 23 164 322 460 5.40e-17 77.8
Msa1026940 AT4G38230.3 32.394 142 93 2 23 164 322 460 5.40e-17 77.8
Msa1026940 AT4G38230.2 32.394 142 93 2 23 164 352 490 5.50e-17 77.8
Msa1026940 AT4G38230.1 32.394 142 93 2 23 164 178 316 7.02e-17 77.0
Msa1026940 AT4G35310.2 32.394 142 93 2 23 164 395 533 9.68e-17 77.0
Msa1026940 AT4G35310.1 32.394 142 93 2 23 164 395 533 9.68e-17 77.0
Msa1026940 AT4G04710.2 34.965 143 89 3 23 164 330 469 1.07e-16 77.0
Msa1026940 AT4G04710.3 34.965 143 89 3 23 164 316 455 1.44e-16 76.6
Msa1026940 AT4G04710.1 34.965 143 89 3 23 164 343 482 1.51e-16 76.6
Msa1026940 AT5G04870.1 31.690 142 94 2 23 164 448 586 2.64e-16 75.9
Msa1026940 AT4G12860.1 30.556 144 98 1 28 169 3 146 4.62e-16 71.6
Msa1026940 AT4G23650.1 30.769 143 97 2 22 164 375 515 9.33e-16 74.3
Msa1026940 AT3G10660.2 30.986 142 95 2 23 164 484 622 9.60e-16 74.3
Msa1026940 AT3G10660.1 30.986 142 95 2 23 164 484 622 9.60e-16 74.3
Msa1026940 AT4G03290.1 30.714 140 92 2 30 164 5 144 1.44e-15 70.5
Msa1026940 AT3G07490.1 30.986 142 96 1 30 169 5 146 1.51e-15 70.1
Msa1026940 AT5G17470.1 36.232 138 86 2 31 166 3 140 1.67e-15 70.1
Msa1026940 AT4G04740.4 32.192 146 93 3 23 166 366 507 1.79e-15 73.6
Msa1026940 AT4G04740.6 32.192 146 93 3 23 166 366 507 1.79e-15 73.6
Msa1026940 AT4G04740.5 32.192 146 93 3 23 166 366 507 1.79e-15 73.6
Msa1026940 AT4G04740.3 32.192 146 93 3 23 166 366 507 1.79e-15 73.6
Msa1026940 AT4G04740.1 32.192 146 93 3 23 166 366 507 1.79e-15 73.6
Msa1026940 AT4G04740.7 32.192 146 93 3 23 166 366 507 1.79e-15 73.6
Msa1026940 AT4G04710.4 35.172 145 88 4 23 164 343 484 1.87e-15 73.6
Msa1026940 AT4G04700.1 32.414 145 96 2 22 166 328 470 2.76e-15 72.8
Msa1026940 AT5G42380.1 28.676 136 96 1 30 164 49 184 8.30e-15 68.9
Msa1026940 AT4G04695.1 31.034 145 98 2 22 166 328 470 2.02e-14 70.5
Msa1026940 AT3G03000.1 27.027 148 107 1 23 169 13 160 1.18e-13 65.5
Msa1026940 AT3G50770.1 29.762 168 111 3 2 164 38 203 1.64e-13 65.9
Msa1026940 AT3G57530.1 29.412 153 99 6 22 170 360 507 3.75e-13 66.6
Msa1026940 AT3G51850.1 30.201 149 102 2 23 170 352 499 3.84e-13 66.6
Msa1026940 AT1G74740.1 28.477 151 104 4 22 170 356 504 4.06e-13 66.6
Msa1026940 AT1G50700.2 29.518 166 85 4 29 166 377 538 4.83e-13 66.6
Msa1026940 AT2G41100.2 29.921 127 72 2 55 164 1 127 4.90e-13 64.7
Msa1026940 AT2G41100.2 33.654 104 66 1 10 113 46 146 6.68e-13 64.3
Msa1026940 AT3G10190.1 32.609 138 90 3 30 165 70 206 4.92e-13 64.7
Msa1026940 AT5G12480.2 27.815 151 106 3 22 170 262 411 5.48e-13 66.2
Msa1026940 AT5G12480.1 27.815 151 106 3 22 170 356 505 5.82e-13 66.2
Msa1026940 AT2G41100.5 36.264 91 55 1 23 113 5 92 5.88e-13 63.2
Msa1026940 AT2G41410.1 31.159 138 92 3 30 164 70 207 4.37e-12 62.4
Msa1026940 AT4G04740.2 31.298 131 84 3 23 151 366 492 4.74e-12 63.5
Msa1026940 AT3G03400.1 31.452 124 83 1 31 152 6 129 4.90e-12 60.5
Msa1026940 AT1G76640.1 27.083 144 103 1 23 164 15 158 5.70e-12 60.8
Msa1026940 AT2G41860.2 28.289 152 103 4 22 170 351 499 1.01e-11 62.8
Msa1026940 AT2G41860.1 28.289 152 103 4 22 170 351 499 1.13e-11 62.4
Msa1026940 AT1G18890.1 29.605 152 101 5 22 170 360 508 3.14e-11 61.2

Find 62 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAATTCACGATTTGGAAAT+TGG 0.146463 7_1:-59140120 None:intergenic
TTGTTTGTTGTTGAATCTTC+TGG 0.148468 7_1:-59140347 None:intergenic
AGTGTCTCTTTCTCCTATTT+TGG 0.237506 7_1:-59141211 None:intergenic
GCTTGATTACATATATATAT+TGG 0.268091 7_1:+59143161 Msa1026940:three_prime_UTR
TTACAACTTACAAGTATAAA+TGG 0.283259 7_1:-59143436 None:intergenic
CAGTCATCTTCTATACTTAG+AGG 0.308294 7_1:+59140319 Msa1026940:intron
ATTGATGTATGTCTGAATTT+AGG 0.322662 7_1:+59143290 Msa1026940:three_prime_UTR
TTTGTGGAAACTTACTATTT+TGG 0.351393 7_1:-59141464 None:intergenic
CTACTGTTCCCAGTTGCATT+TGG 0.359674 7_1:-59143326 None:intergenic
TGTGTTATTGTGCAAATTGT+AGG 0.363040 7_1:+59143197 Msa1026940:three_prime_UTR
TAGGGCAGCAATTCACGATT+TGG 0.370079 7_1:-59140127 None:intergenic
TCTTATCTTTGTAGGGCCCT+TGG 0.375272 7_1:+59140654 Msa1026940:intron
CACATGATGACGGCCAAAAT+AGG 0.383388 7_1:+59141198 Msa1026940:CDS
CATAAGTGTGTTACTTGCTC+TGG 0.399184 7_1:-59143519 None:intergenic
CTGTTTGGACCAAATGCAAC+TGG 0.409973 7_1:+59143317 Msa1026940:three_prime_UTR
CTGAATTTAGGTGTTCTGTT+TGG 0.413498 7_1:+59143302 Msa1026940:three_prime_UTR
TGTAACAACTTAATGCTTGT+CGG 0.416612 7_1:+59143454 Msa1026940:three_prime_UTR
CTACATCGAGTAGTTAGCTT+TGG 0.418501 7_1:+59143135 Msa1026940:three_prime_UTR
CTGGAATGGTTGTCGGAGTT+GGG 0.423966 7_1:-59143500 None:intergenic
ATCCAACACAAGTACACAAC+TGG 0.432498 7_1:+59140031 None:intergenic
GTACCATTGTGGTTTGAACT+AGG 0.441179 7_1:-59140146 None:intergenic
ATCGAGTAGTTAGCTTTGGC+TGG 0.442867 7_1:+59143139 Msa1026940:three_prime_UTR
ATTCAATAACAACTTGTGAT+AGG 0.443710 7_1:+59143477 Msa1026940:three_prime_UTR
TGTATCTTATCTCCGATCAT+AGG 0.444892 7_1:+59143400 Msa1026940:three_prime_UTR
TGGAAATTGGAACAAAGTCC+TGG 0.451008 7_1:-59140107 None:intergenic
TCTGGAATGGTTGTCGGAGT+TGG 0.454925 7_1:-59143501 None:intergenic
ATCATCATGATGAACTCCTC+TGG 0.458576 7_1:-59143081 None:intergenic
AAATGATAGCAGATGTCGAC+AGG 0.463318 7_1:+59141139 Msa1026940:CDS
ACTTGCTCTGGAATGGTTGT+CGG 0.466816 7_1:-59143507 None:intergenic
ATCATGATGATGAACACAAC+AGG 0.494636 7_1:+59143093 Msa1026940:CDS
TTATTCGACACCGATGGCTC+AGG 0.506187 7_1:+59140427 Msa1026940:CDS
TGTATTGTAGGGTAAGATAT+CGG 0.507847 7_1:+59141359 Msa1026940:intron
CATAGCAACATTAAGCTCCT+TGG 0.513823 7_1:-59140554 None:intergenic
TTTAGGTACTATTGATGCCA+AGG 0.521565 7_1:+59140537 Msa1026940:intron
TACCATTGTGGTTTGAACTA+GGG 0.521619 7_1:-59140145 None:intergenic
TGATAGAGAGATTCAGGAGA+TGG 0.522125 7_1:+59141428 Msa1026940:CDS
GTGTGTTACTTGCTCTGGAA+TGG 0.524313 7_1:-59143514 None:intergenic
CTTCAGTCATCTCAAATCCA+AGG 0.540688 7_1:-59140671 None:intergenic
TAGCAGATGTCGACAGGGAT+GGG 0.548013 7_1:+59141145 Msa1026940:CDS
GACAATGTTTCTCCTATGAT+CGG 0.560921 7_1:-59143412 None:intergenic
AAGCGGATTGCAAAAGAGCT+AGG 0.569005 7_1:+59141393 Msa1026940:CDS
AGGAGAAAGAGACACTAAAG+AGG 0.570607 7_1:+59141218 Msa1026940:CDS
ATAGCAGATGTCGACAGGGA+TGG 0.573080 7_1:+59141144 Msa1026940:CDS
CGAAAGCAAAGATTCTGTCC+AGG 0.573492 7_1:+59140089 Msa1026940:five_prime_UTR
GATGTCGACAGGGATGGGAG+TGG 0.578755 7_1:+59141150 Msa1026940:CDS
TTCAGTCATCTCAAATCCAA+GGG 0.589829 7_1:-59140670 None:intergenic
TGATCGAGAGGTTGATCCAG+AGG 0.590124 7_1:+59143065 Msa1026940:CDS
TTTGAATTATTCGACACCGA+TGG 0.593671 7_1:+59140421 Msa1026940:CDS
TGTTTGGACCAAATGCAACT+GGG 0.605766 7_1:+59143318 Msa1026940:three_prime_UTR
TGGATTTGAGATGACTGAAG+AGG 0.608260 7_1:+59140674 Msa1026940:CDS
AGGAGCTTAATGTTGCTATG+AGG 0.614526 7_1:+59140557 Msa1026940:CDS
GTAGGGTAAGATATCGGCAT+CGG 0.618796 7_1:+59141365 Msa1026940:intron
AAAGTGTAAACCTGAGCCAT+CGG 0.620191 7_1:-59140437 None:intergenic
GCAGAGAGATCGTACCATTG+TGG 0.622317 7_1:-59140157 None:intergenic
AGATTCAACAACAAACAAAG+AGG 0.630713 7_1:+59140352 Msa1026940:CDS
AGACATACATCAATGCTCAC+AGG 0.630972 7_1:-59143281 None:intergenic
ATAATATGCAGATGATCGAG+AGG 0.639575 7_1:+59143053 Msa1026940:intron
GATGTAGATATGACTAGTGA+CGG 0.656087 7_1:-59143119 None:intergenic
TGAATTTGAGCACATGATGA+CGG 0.665935 7_1:+59141188 Msa1026940:CDS
TATCGGCATCGGATATCAAG+CGG 0.676928 7_1:+59141376 Msa1026940:CDS
AATGATAGCAGATGTCGACA+GGG 0.695960 7_1:+59141140 Msa1026940:CDS
TGCCCTAGTTCAAACCACAA+TGG 0.715976 7_1:+59140143 Msa1026940:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATGTTTTTCATAATAAT+TGG + chr7_1:59140602-59140621 Msa1026940:intron 10.0%
!!! AAATGTTTTTCATAATAATT+GGG + chr7_1:59140603-59140622 Msa1026940:intron 10.0%
!!! AAACTAATATATTTTAACAA+TGG - chr7_1:59142085-59142104 None:intergenic 10.0%
!!! TTTTTCAATAAATGTTTTAT+GGG - chr7_1:59142849-59142868 None:intergenic 10.0%
!!! ATTTTTCAATAAATGTTTTA+TGG - chr7_1:59142850-59142869 None:intergenic 10.0%
!!! TACTTTGTTTAATGATTTTT+AGG + chr7_1:59140520-59140539 Msa1026940:intron 15.0%
!! ATAAGAAATAATAGTATCAT+TGG + chr7_1:59141608-59141627 Msa1026940:intron 15.0%
!! TAAAAAGTAAACATAATGAT+TGG + chr7_1:59141824-59141843 Msa1026940:intron 15.0%
!! ATATATATATATAATCCCTA+AGG + chr7_1:59142113-59142132 Msa1026940:intron 15.0%
!!! TTTTAACTTTGTTTTTTATG+GGG - chr7_1:59142390-59142409 None:intergenic 15.0%
!!! CTTTTAACTTTGTTTTTTAT+GGG - chr7_1:59142391-59142410 None:intergenic 15.0%
!! AATAGATTAAAGTATAGAAT+AGG + chr7_1:59142428-59142447 Msa1026940:intron 15.0%
!!! CATTAAACAAAGTATTAGTA+TGG - chr7_1:59140514-59140533 None:intergenic 20.0%
!! ATCTTATTCTTATCTTTGTA+GGG + chr7_1:59140647-59140666 Msa1026940:intron 20.0%
!! GGTAATTAATGTTTATGTTT+GGG + chr7_1:59140747-59140766 Msa1026940:intron 20.0%
!! TCTTATACTAATTTAGAGAT+AGG + chr7_1:59140970-59140989 Msa1026940:intron 20.0%
!! CTTATACTAATTTAGAGATA+GGG + chr7_1:59140971-59140990 Msa1026940:intron 20.0%
!!! TTTTGTCTTGATCAATAATA+TGG - chr7_1:59141260-59141279 None:intergenic 20.0%
!!! TAAAAATTTTACATCTCACA+TGG + chr7_1:59141515-59141534 Msa1026940:intron 20.0%
!!! TATGATTCATTTTTATTGTC+AGG - chr7_1:59141799-59141818 None:intergenic 20.0%
!!! ATTTTAATTAGAGTACCTTA+AGG + chr7_1:59141913-59141932 Msa1026940:intron 20.0%
!!! CCTTTTAACTTTGTTTTTTA+TGG - chr7_1:59142392-59142411 None:intergenic 20.0%
!! CCATAAAAAACAAAGTTAAA+AGG + chr7_1:59142389-59142408 Msa1026940:intron 20.0%
!! TGGTTTCATAAAAATTCTTA+AGG + chr7_1:59142910-59142929 Msa1026940:intron 20.0%
!! GGTTTCATAAAAATTCTTAA+GGG + chr7_1:59142911-59142930 Msa1026940:intron 20.0%
!! GTTTCATAAAAATTCTTAAG+GGG + chr7_1:59142912-59142931 Msa1026940:intron 20.0%
!! AAATAATATCTCACAAACAT+GGG - chr7_1:59143014-59143033 None:intergenic 20.0%
!! TAAATAATATCTCACAAACA+TGG - chr7_1:59143015-59143034 None:intergenic 20.0%
!! GCTTGATTACATATATATAT+TGG + chr7_1:59143161-59143180 Msa1026940:three_prime_UTR 20.0%
!! TTACAACTTACAAGTATAAA+TGG - chr7_1:59143439-59143458 None:intergenic 20.0%
!!! CAAGAATATTTTTGACTACA+TGG - chr7_1:59140477-59140496 None:intergenic 25.0%
! AGTATTAGTATGGTATAAAG+AGG - chr7_1:59140504-59140523 None:intergenic 25.0%
! CATCTTATTCTTATCTTTGT+AGG + chr7_1:59140646-59140665 Msa1026940:intron 25.0%
! CGGTAATTAATGTTTATGTT+TGG + chr7_1:59140746-59140765 Msa1026940:intron 25.0%
! TGATATTTACACAAAAGACT+AGG - chr7_1:59140897-59140916 None:intergenic 25.0%
! AAATGCTACAACAATAGAAA+GGG - chr7_1:59140938-59140957 None:intergenic 25.0%
! TAAATGCTACAACAATAGAA+AGG - chr7_1:59140939-59140958 None:intergenic 25.0%
! AGATTATGTACAATATTGTC+AGG + chr7_1:59141032-59141051 Msa1026940:intron 25.0%
! CAAGACAAAAATGTGAATAT+CGG + chr7_1:59141270-59141289 Msa1026940:intron 25.0%
!!! TGATTCTCATTGTATTTTTG+TGG + chr7_1:59141332-59141351 Msa1026940:intron 25.0%
!! TTTGTGGAAACTTACTATTT+TGG - chr7_1:59141467-59141486 None:intergenic 25.0%
! CGTATTTGTATATCATTCTA+CGG + chr7_1:59141538-59141557 Msa1026940:intron 25.0%
! TTATGAACGCTAAACTTAAA+AGG - chr7_1:59142168-59142187 None:intergenic 25.0%
! ATCAAGGTAGAATAAACAAT+AGG + chr7_1:59142535-59142554 Msa1026940:intron 25.0%
! TCAAGGTAGAATAAACAATA+GGG + chr7_1:59142536-59142555 Msa1026940:intron 25.0%
!! TTTTATGGGATATACAATTC+AGG - chr7_1:59142835-59142854 None:intergenic 25.0%
!! TTTGTCAGTTTGAAACTAAA+CGG + chr7_1:59142876-59142895 Msa1026940:intron 25.0%
! ATTGATGTATGTCTGAATTT+AGG + chr7_1:59143290-59143309 Msa1026940:three_prime_UTR 25.0%
! ATTCAATAACAACTTGTGAT+AGG + chr7_1:59143477-59143496 Msa1026940:three_prime_UTR 25.0%
!! TTGTTTGTTGTTGAATCTTC+TGG - chr7_1:59140350-59140369 None:intergenic 30.0%
AGATTCAACAACAAACAAAG+AGG + chr7_1:59140352-59140371 Msa1026940:CDS 30.0%
! AGGTATTGTTGTTATTCACA+AGG + chr7_1:59140577-59140596 Msa1026940:intron 30.0%
! AGACTAGGAATTATTTTCCT+TGG - chr7_1:59140882-59140901 None:intergenic 30.0%
TACAACAATAGAAAGGGAAT+TGG - chr7_1:59140932-59140951 None:intergenic 30.0%
ATTGTTGTAGCATTTAGCTA+TGG + chr7_1:59140943-59140962 Msa1026940:intron 30.0%
ATTTAGAGATAGGGATTCAA+TGG + chr7_1:59140980-59140999 Msa1026940:intron 30.0%
!! AATTTGCTGAAATGACACAA+TGG - chr7_1:59141115-59141134 None:intergenic 30.0%
TGTATTGTAGGGTAAGATAT+CGG + chr7_1:59141359-59141378 Msa1026940:intron 30.0%
! TTTTACTGATAGAGAGATTC+AGG + chr7_1:59141422-59141441 Msa1026940:CDS 30.0%
CTAAAAAGTTAGAACTAGCA+AGG - chr7_1:59141495-59141514 None:intergenic 30.0%
! TTTTAGTACTCACGTAGTTT+CGG + chr7_1:59141688-59141707 Msa1026940:intron 30.0%
ACATAATTTGAGCTATAGAG+AGG + chr7_1:59141857-59141876 Msa1026940:intron 30.0%
CATAATTTGAGCTATAGAGA+GGG + chr7_1:59141858-59141877 Msa1026940:intron 30.0%
TACCTTAAGGTAATATTTGC+TGG + chr7_1:59141926-59141945 Msa1026940:intron 30.0%
! AACTTACTTTCGGACATTTT+GGG - chr7_1:59141965-59141984 None:intergenic 30.0%
TGTTCCTAACAACTTACTTT+CGG - chr7_1:59141975-59141994 None:intergenic 30.0%
ACACAAAAATTACAAGTTCC+AGG - chr7_1:59142469-59142488 None:intergenic 30.0%
!! ATAAACAATAGGGTGCTATT+TGG + chr7_1:59142546-59142565 Msa1026940:intron 30.0%
!!! TATAGGCATTTTGGATTAGT+AGG + chr7_1:59142636-59142655 Msa1026940:intron 30.0%
! TTGTCAGTTTGAAACTAAAC+GGG + chr7_1:59142877-59142896 Msa1026940:intron 30.0%
TTCAACACACAAAAAGAGTA+TGG - chr7_1:59142960-59142979 None:intergenic 30.0%
!!! GTTGAATTTTTTCTTGCGTT+AGG + chr7_1:59142974-59142993 Msa1026940:intron 30.0%
!!! ATTTTTTCTTGCGTTAGGAT+TGG + chr7_1:59142979-59142998 Msa1026940:intron 30.0%
! TGTGTTATTGTGCAAATTGT+AGG + chr7_1:59143197-59143216 Msa1026940:three_prime_UTR 30.0%
TGTAACAACTTAATGCTTGT+CGG + chr7_1:59143454-59143473 Msa1026940:three_prime_UTR 30.0%
! GCAATTCACGATTTGGAAAT+TGG - chr7_1:59140123-59140142 None:intergenic 35.0%
TACCATTGTGGTTTGAACTA+GGG - chr7_1:59140148-59140167 None:intergenic 35.0%
CAGTCATCTTCTATACTTAG+AGG + chr7_1:59140319-59140338 Msa1026940:intron 35.0%
TTTGAATTATTCGACACCGA+TGG + chr7_1:59140421-59140440 Msa1026940:CDS 35.0%
GACTACATGGTTATTGTTGA+TGG - chr7_1:59140464-59140483 None:intergenic 35.0%
TTTAGGTACTATTGATGCCA+AGG + chr7_1:59140537-59140556 Msa1026940:intron 35.0%
TTCAGTCATCTCAAATCCAA+GGG - chr7_1:59140673-59140692 None:intergenic 35.0%
CAACGAGTGGTTATAAAAAG+GGG - chr7_1:59140711-59140730 None:intergenic 35.0%
GCAACGAGTGGTTATAAAAA+GGG - chr7_1:59140712-59140731 None:intergenic 35.0%
TGCAACGAGTGGTTATAAAA+AGG - chr7_1:59140713-59140732 None:intergenic 35.0%
ACAACATAATATGCAACGAG+TGG - chr7_1:59140724-59140743 None:intergenic 35.0%
! GGAATTATTTTCCTTGGCAA+CGG - chr7_1:59140876-59140895 None:intergenic 35.0%
TGAATTTGAGCACATGATGA+CGG + chr7_1:59141188-59141207 Msa1026940:CDS 35.0%
! AGTGTCTCTTTCTCCTATTT+TGG - chr7_1:59141214-59141233 None:intergenic 35.0%
! TTTTGTGGTCACTGTATTGT+AGG + chr7_1:59141347-59141366 Msa1026940:intron 35.0%
TTTGTGGTCACTGTATTGTA+GGG + chr7_1:59141348-59141367 Msa1026940:intron 35.0%
AACTAGCAAGGATATGTTTG+TGG - chr7_1:59141483-59141502 None:intergenic 35.0%
! ATTGAAAGTATAGTGCGCAT+TGG + chr7_1:59141659-59141678 Msa1026940:intron 35.0%
! TTGAAAGTATAGTGCGCATT+GGG + chr7_1:59141660-59141679 Msa1026940:intron 35.0%
GACATTCATGTAAACATCGA+AGG + chr7_1:59141749-59141768 Msa1026940:intron 35.0%
TAGAGAGGGAATCTGATATA+TGG + chr7_1:59141872-59141891 Msa1026940:intron 35.0%
TGATATATGGTTGCATTGCA+TGG + chr7_1:59141885-59141904 Msa1026940:intron 35.0%
CACCAGCAAATATTACCTTA+AGG - chr7_1:59141931-59141950 None:intergenic 35.0%
! CTTAAGGTAATATTTGCTGG+TGG + chr7_1:59141929-59141948 Msa1026940:intron 35.0%
! CAACTTACTTTCGGACATTT+TGG - chr7_1:59141966-59141985 None:intergenic 35.0%
ATGTCCGAAAGTAAGTTGTT+AGG + chr7_1:59141968-59141987 Msa1026940:intron 35.0%
! TACTACTGTAACTTGCAAGA+TGG - chr7_1:59142059-59142078 None:intergenic 35.0%
GAGTTACTACATCAACCTTA+GGG - chr7_1:59142131-59142150 None:intergenic 35.0%
TGAGTTACTACATCAACCTT+AGG - chr7_1:59142132-59142151 None:intergenic 35.0%
ATTACAAGTTCCAGGTGATA+TGG - chr7_1:59142461-59142480 None:intergenic 35.0%
GTCAGTTACAATGGCAATTT+GGG + chr7_1:59142579-59142598 Msa1026940:intron 35.0%
! GCACATTTGTATAGGCATTT+TGG + chr7_1:59142627-59142646 Msa1026940:intron 35.0%
CATAACAAGTAGTACAAGCA+GGG - chr7_1:59142774-59142793 None:intergenic 35.0%
ACATAACAAGTAGTACAAGC+AGG - chr7_1:59142775-59142794 None:intergenic 35.0%
CTGGTTCCTATGATTACAAT+AGG + chr7_1:59142807-59142826 Msa1026940:intron 35.0%
CAGGAACCTATTGTAATCAT+AGG - chr7_1:59142816-59142835 None:intergenic 35.0%
! TGTCAGTTTGAAACTAAACG+GGG + chr7_1:59142878-59142897 Msa1026940:intron 35.0%
ATAATATGCAGATGATCGAG+AGG + chr7_1:59143053-59143072 Msa1026940:intron 35.0%
! ATCATGATGATGAACACAAC+AGG + chr7_1:59143093-59143112 Msa1026940:CDS 35.0%
GATGTAGATATGACTAGTGA+CGG - chr7_1:59143122-59143141 None:intergenic 35.0%
CTGAATTTAGGTGTTCTGTT+TGG + chr7_1:59143302-59143321 Msa1026940:three_prime_UTR 35.0%
TGTATCTTATCTCCGATCAT+AGG + chr7_1:59143400-59143419 Msa1026940:three_prime_UTR 35.0%
GACAATGTTTCTCCTATGAT+CGG - chr7_1:59143415-59143434 None:intergenic 35.0%
TGGAAATTGGAACAAAGTCC+TGG - chr7_1:59140110-59140129 None:intergenic 40.0%
GTACCATTGTGGTTTGAACT+AGG - chr7_1:59140149-59140168 None:intergenic 40.0%
AAAGTGTAAACCTGAGCCAT+CGG - chr7_1:59140440-59140459 None:intergenic 40.0%
CATAGCAACATTAAGCTCCT+TGG - chr7_1:59140557-59140576 None:intergenic 40.0%
AGGAGCTTAATGTTGCTATG+AGG + chr7_1:59140557-59140576 Msa1026940:CDS 40.0%
CTTCAGTCATCTCAAATCCA+AGG - chr7_1:59140674-59140693 None:intergenic 40.0%
! TGGATTTGAGATGACTGAAG+AGG + chr7_1:59140674-59140693 Msa1026940:CDS 40.0%
TGGTTATAAAAAGGGGCAGA+GGG - chr7_1:59140704-59140723 None:intergenic 40.0%
CGTTGCATATTATGTTGTCG+CGG + chr7_1:59140726-59140745 Msa1026940:intron 40.0%
AAATGATAGCAGATGTCGAC+AGG + chr7_1:59141139-59141158 Msa1026940:CDS 40.0%
AATGATAGCAGATGTCGACA+GGG + chr7_1:59141140-59141159 Msa1026940:CDS 40.0%
AGGAGAAAGAGACACTAAAG+AGG + chr7_1:59141218-59141237 Msa1026940:CDS 40.0%
TGATAGAGAGATTCAGGAGA+TGG + chr7_1:59141428-59141447 Msa1026940:CDS 40.0%
TATATCATTCTACGGTGAGC+TGG + chr7_1:59141546-59141565 Msa1026940:intron 40.0%
ATATCATTCTACGGTGAGCT+GGG + chr7_1:59141547-59141566 Msa1026940:intron 40.0%
! GGTGGAGATATGTGTGTTTT+AGG + chr7_1:59141568-59141587 Msa1026940:intron 40.0%
TTAGCGTTCATAACCCACTT+CGG + chr7_1:59142175-59142194 Msa1026940:intron 40.0%
CTAAACTAACCCACCCAAAT+TGG - chr7_1:59142275-59142294 None:intergenic 40.0%
GAAGGATATGTTCTGCCATA+TGG + chr7_1:59142326-59142345 Msa1026940:intron 40.0%
TATGTTCTGCCATATGGTAG+CGG + chr7_1:59142332-59142351 Msa1026940:intron 40.0%
TGCGATTTAGCTGGAAATCA+AGG + chr7_1:59142519-59142538 Msa1026940:intron 40.0%
!! ACAATAGGGTGCTATTTGGT+CGG + chr7_1:59142550-59142569 Msa1026940:intron 40.0%
GGTCAGTTACAATGGCAATT+TGG + chr7_1:59142578-59142597 Msa1026940:intron 40.0%
AATGGCAATTTGGGAGTTAG+AGG + chr7_1:59142588-59142607 Msa1026940:intron 40.0%
GGAGTTAGAGGTTAATTAGC+AGG + chr7_1:59142600-59142619 Msa1026940:intron 40.0%
CAGGTTCTGCACATTTGTAT+AGG + chr7_1:59142619-59142638 Msa1026940:intron 40.0%
! TCTCTTAGTTGTGACTTGTG+AGG + chr7_1:59142670-59142689 Msa1026940:intron 40.0%
! CTCTTAGTTGTGACTTGTGA+GGG + chr7_1:59142671-59142690 Msa1026940:intron 40.0%
! TCTTAGTTGTGACTTGTGAG+GGG + chr7_1:59142672-59142691 Msa1026940:intron 40.0%
CCTGCAATGGAGAGAAAATA+AGG - chr7_1:59142713-59142732 None:intergenic 40.0%
!!! CCTTATTTTCTCTCCATTGC+AGG + chr7_1:59142710-59142729 Msa1026940:intron 40.0%
GAACACTGTTATTCCTGCAA+TGG - chr7_1:59142726-59142745 None:intergenic 40.0%
! TACAAGCAGGGAAAGTGTAT+GGG - chr7_1:59142762-59142781 None:intergenic 40.0%
!! GTACTACTTGTTATGTCCTG+TGG + chr7_1:59142779-59142798 Msa1026940:intron 40.0%
! GTTATGTCCTGTGGTTTTTC+TGG + chr7_1:59142788-59142807 Msa1026940:intron 40.0%
ATAGGAACCAGAAAAACCAC+AGG - chr7_1:59142798-59142817 None:intergenic 40.0%
! GTCAGTTTGAAACTAAACGG+GGG + chr7_1:59142879-59142898 Msa1026940:intron 40.0%
! TCAGTTTGAAACTAAACGGG+GGG + chr7_1:59142880-59142899 Msa1026940:intron 40.0%
ATCATCATGATGAACTCCTC+TGG - chr7_1:59143084-59143103 None:intergenic 40.0%
! CTACATCGAGTAGTTAGCTT+TGG + chr7_1:59143135-59143154 Msa1026940:three_prime_UTR 40.0%
AGACATACATCAATGCTCAC+AGG - chr7_1:59143284-59143303 None:intergenic 40.0%
TGTTTGGACCAAATGCAACT+GGG + chr7_1:59143318-59143337 Msa1026940:three_prime_UTR 40.0%
!! CATAAGTGTGTTACTTGCTC+TGG - chr7_1:59143522-59143541 None:intergenic 40.0%
CGAAAGCAAAGATTCTGTCC+AGG + chr7_1:59140089-59140108 Msa1026940:five_prime_UTR 45.0%
TAGGGCAGCAATTCACGATT+TGG - chr7_1:59140130-59140149 None:intergenic 45.0%
TGCCCTAGTTCAAACCACAA+TGG + chr7_1:59140143-59140162 Msa1026940:exon 45.0%
TCTTATCTTTGTAGGGCCCT+TGG + chr7_1:59140654-59140673 Msa1026940:intron 45.0%
GTTATAAAAAGGGGCAGAGG+GGG - chr7_1:59140702-59140721 None:intergenic 45.0%
GGTTATAAAAAGGGGCAGAG+GGG - chr7_1:59140703-59140722 None:intergenic 45.0%
GTGGTTATAAAAAGGGGCAG+AGG - chr7_1:59140705-59140724 None:intergenic 45.0%
! TTTTCCTTGGCAACGGTCAA+TGG - chr7_1:59140869-59140888 None:intergenic 45.0%
!! CACATGATGACGGCCAAAAT+AGG + chr7_1:59141198-59141217 Msa1026940:CDS 45.0%
GTAGGGTAAGATATCGGCAT+CGG + chr7_1:59141365-59141384 Msa1026940:intron 45.0%
! TATCGGCATCGGATATCAAG+CGG + chr7_1:59141376-59141395 Msa1026940:CDS 45.0%
!! AAGCGGATTGCAAAAGAGCT+AGG + chr7_1:59141393-59141412 Msa1026940:CDS 45.0%
! CTGTAACTTGCAAGATGGAG+TGG - chr7_1:59142054-59142073 None:intergenic 45.0%
GAATCGAACATGTGACCTAG+AGG - chr7_1:59142243-59142262 None:intergenic 45.0%
AAGTTTAGCGTTCCTGCTGA+AGG + chr7_1:59142308-59142327 Msa1026940:intron 45.0%
ATGTTCTGCCATATGGTAGC+GGG + chr7_1:59142333-59142352 Msa1026940:intron 45.0%
GTACAATACACACGATGCGT+AGG + chr7_1:59142487-59142506 Msa1026940:intron 45.0%
ACTTGGACATGCGATTTAGC+TGG + chr7_1:59142510-59142529 Msa1026940:intron 45.0%
CGGTCAAAGGTCAGTTACAA+TGG + chr7_1:59142570-59142589 Msa1026940:intron 45.0%
! ACAAGCAGGGAAAGTGTATG+GGG - chr7_1:59142761-59142780 None:intergenic 45.0%
! GTACAAGCAGGGAAAGTGTA+TGG - chr7_1:59142763-59142782 None:intergenic 45.0%
!! ATCGAGTAGTTAGCTTTGGC+TGG + chr7_1:59143139-59143158 Msa1026940:three_prime_UTR 45.0%
CTGTTTGGACCAAATGCAAC+TGG + chr7_1:59143317-59143336 Msa1026940:three_prime_UTR 45.0%
CTACTGTTCCCAGTTGCATT+TGG - chr7_1:59143329-59143348 None:intergenic 45.0%
!! ACTTGCTCTGGAATGGTTGT+CGG - chr7_1:59143510-59143529 None:intergenic 45.0%
!! GTGTGTTACTTGCTCTGGAA+TGG - chr7_1:59143517-59143536 None:intergenic 45.0%
GCAGAGAGATCGTACCATTG+TGG - chr7_1:59140160-59140179 None:intergenic 50.0%
TTATTCGACACCGATGGCTC+AGG + chr7_1:59140427-59140446 Msa1026940:CDS 50.0%
TCATCCATTGACCGTTGCCA+AGG + chr7_1:59140862-59140881 Msa1026940:intron 50.0%
ATAGCAGATGTCGACAGGGA+TGG + chr7_1:59141144-59141163 Msa1026940:CDS 50.0%
TAGCAGATGTCGACAGGGAT+GGG + chr7_1:59141145-59141164 Msa1026940:CDS 50.0%
CGTTCATAACCCACTTCGGT+TGG + chr7_1:59142179-59142198 Msa1026940:intron 50.0%
TCGAACATGTGACCTAGAGG+AGG - chr7_1:59142240-59142259 None:intergenic 50.0%
GTCACATGTTCGATTCTCCC+CGG + chr7_1:59142247-59142266 Msa1026940:intron 50.0%
! ATTCTCCCCGGTGCCAATTT+GGG + chr7_1:59142259-59142278 Msa1026940:intron 50.0%
TAACCCACCCAAATTGGCAC+CGG - chr7_1:59142269-59142288 None:intergenic 50.0%
GGCAGAACATATCCTTCAGC+AGG - chr7_1:59142323-59142342 None:intergenic 50.0%
! TGTTCTGCCATATGGTAGCG+GGG + chr7_1:59142334-59142353 Msa1026940:intron 50.0%
AGGTTCACAGCCATATCACC+TGG + chr7_1:59142448-59142467 Msa1026940:intron 50.0%
TACACACGATGCGTAGGACT+TGG + chr7_1:59142493-59142512 Msa1026940:intron 50.0%
!! GGTGCTATTTGGTCGGTCAA+AGG + chr7_1:59142557-59142576 Msa1026940:intron 50.0%
! TGTGACTTGTGAGGGGAAAC+TGG + chr7_1:59142679-59142698 Msa1026940:intron 50.0%
! CAAGCAGGGAAAGTGTATGG+GGG - chr7_1:59142760-59142779 None:intergenic 50.0%
ACTAAACGGGGGGTTTGCAT+TGG + chr7_1:59142890-59142909 Msa1026940:intron 50.0%
! TGATCGAGAGGTTGATCCAG+AGG + chr7_1:59143065-59143084 Msa1026940:CDS 50.0%
CTGGAATGGTTGTCGGAGTT+GGG - chr7_1:59143503-59143522 None:intergenic 50.0%
! TCTGGAATGGTTGTCGGAGT+TGG - chr7_1:59143504-59143523 None:intergenic 50.0%
TCATTCTACGGTGAGCTGGG+TGG + chr7_1:59141550-59141569 Msa1026940:intron 55.0%
ACCATCAGGCCAACCGAAGT+GGG - chr7_1:59142191-59142210 None:intergenic 55.0%
!! TTCGGTTGGCCTGATGGTGT+TGG + chr7_1:59142193-59142212 Msa1026940:intron 55.0%
!! TTGGCCTGATGGTGTTGGCT+TGG + chr7_1:59142198-59142217 Msa1026940:intron 55.0%
!! TGGCCTGATGGTGTTGGCTT+GGG + chr7_1:59142199-59142218 Msa1026940:intron 55.0%
GATCCCAAGCCAACACCATC+AGG - chr7_1:59142205-59142224 None:intergenic 55.0%
! CTAGAGGAGGAGCACACTCT+AGG - chr7_1:59142227-59142246 None:intergenic 55.0%
CTAGAGTGTGCTCCTCCTCT+AGG + chr7_1:59142225-59142244 Msa1026940:intron 55.0%
! GATTCTCCCCGGTGCCAATT+TGG + chr7_1:59142258-59142277 Msa1026940:intron 55.0%
AACCCACCCAAATTGGCACC+GGG - chr7_1:59142268-59142287 None:intergenic 55.0%
AGTCCTTCCCCGCTACCATA+TGG - chr7_1:59142344-59142363 None:intergenic 55.0%
GATGTCGACAGGGATGGGAG+TGG + chr7_1:59141150-59141169 Msa1026940:CDS 60.0%
!! ACCCACTTCGGTTGGCCTGA+TGG + chr7_1:59142187-59142206 Msa1026940:intron 60.0%
CACCATCAGGCCAACCGAAG+TGG - chr7_1:59142192-59142211 None:intergenic 60.0%
! TCCCCGGTGCCAATTTGGGT+GGG + chr7_1:59142263-59142282 Msa1026940:intron 60.0%
ACCCACCCAAATTGGCACCG+GGG - chr7_1:59142267-59142286 None:intergenic 60.0%
!! CTGCCATATGGTAGCGGGGA+AGG + chr7_1:59142338-59142357 Msa1026940:intron 60.0%
! CTCCCCGGTGCCAATTTGGG+TGG + chr7_1:59142262-59142281 Msa1026940:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 59140037 59143549 59140037 ID=Msa1026940;Name=Msa1026940
chr7_1 mRNA 59140037 59143549 59140037 ID=Msa1026940-mRNA-1;Parent=Msa1026940;Name=Msa1026940-mRNA-1;_AED=0.18;_eAED=0.18;_QI=125|1|1|1|1|1|7|421|171
chr7_1 exon 59140037 59140164 59140037 ID=Msa1026940-mRNA-1:exon:11932;Parent=Msa1026940-mRNA-1
chr7_1 exon 59140322 59140448 59140322 ID=Msa1026940-mRNA-1:exon:11933;Parent=Msa1026940-mRNA-1
chr7_1 exon 59140542 59140578 59140542 ID=Msa1026940-mRNA-1:exon:11934;Parent=Msa1026940-mRNA-1
chr7_1 exon 59140668 59140695 59140668 ID=Msa1026940-mRNA-1:exon:11935;Parent=Msa1026940-mRNA-1
chr7_1 exon 59141129 59141281 59141129 ID=Msa1026940-mRNA-1:exon:11936;Parent=Msa1026940-mRNA-1
chr7_1 exon 59141369 59141471 59141369 ID=Msa1026940-mRNA-1:exon:11937;Parent=Msa1026940-mRNA-1
chr7_1 exon 59143064 59143549 59143064 ID=Msa1026940-mRNA-1:exon:11938;Parent=Msa1026940-mRNA-1
chr7_1 five_prime_UTR 59140037 59140161 59140037 ID=Msa1026940-mRNA-1:five_prime_utr;Parent=Msa1026940-mRNA-1
chr7_1 CDS 59140162 59140164 59140162 ID=Msa1026940-mRNA-1:cds;Parent=Msa1026940-mRNA-1
chr7_1 CDS 59140322 59140448 59140322 ID=Msa1026940-mRNA-1:cds;Parent=Msa1026940-mRNA-1
chr7_1 CDS 59140542 59140578 59140542 ID=Msa1026940-mRNA-1:cds;Parent=Msa1026940-mRNA-1
chr7_1 CDS 59140668 59140695 59140668 ID=Msa1026940-mRNA-1:cds;Parent=Msa1026940-mRNA-1
chr7_1 CDS 59141129 59141281 59141129 ID=Msa1026940-mRNA-1:cds;Parent=Msa1026940-mRNA-1
chr7_1 CDS 59141369 59141471 59141369 ID=Msa1026940-mRNA-1:cds;Parent=Msa1026940-mRNA-1
chr7_1 CDS 59143064 59143128 59143064 ID=Msa1026940-mRNA-1:cds;Parent=Msa1026940-mRNA-1
chr7_1 three_prime_UTR 59143129 59143549 59143129 ID=Msa1026940-mRNA-1:three_prime_utr;Parent=Msa1026940-mRNA-1
Gene Sequence

>Msa1026940

ATGTCATCTTCTATACTTAGAGGAGATTCCAGAAGATTCAACAACAAACAAAGAGGAAAACATCATTTGACGCAACAGAAGAGACAAGAGATTAAAGAAGCTTTTGAATTATTCGACACCGATGGCTCAGGTACTATTGATGCCAAGGAGCTTAATGTTGCTATGAGGGCCCTTGGATTTGAGATGACTGAAGAGCAAATTGAGCAAATGATAGCAGATGTCGACAGGGATGGGAGTGGAGCAATCGACTATGATGAATTTGAGCACATGATGACGGCCAAAATAGGAGAAAGAGACACTAAAGAGGAGCTCATGAAAGCTTTCCATATTATTGATCAAGACAAAAATGGTAAGATATCGGCATCGGATATCAAGCGGATTGCAAAAGAGCTAGGTCAAAATTTTACTGATAGAGAGATTCAGGAGATGGTTGATGAAGCAGACCAAAATAATGATCGAGAGGTTGATCCAGAGGAGTTCATCATGATGATGAACACAACAGGCTACCGTCACTAG
Protein sequence

>Msa1026940

MSSSILRGDSRRFNNKQRGKHHLTQQKRQEIKEAFELFDTDGSGTIDAKELNVAMRALGFEMTEEQIEQMIADVDRDGSGAIDYDEFEHMMTAKIGERDTKEELMKAFHIIDQDKNGKISASDIKRIAKELGQNFTDREIQEMVDEADQNNDREVDPEEFIMMMNTTGYRH*