Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0730900 | XP_003615868.1 | 98.053 | 565 | 11 | 0 | 1 | 565 | 1 | 565 | 0.0 | 1136 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0730900 | sp|B9DFS6|SNX2B_ARATH | 67.632 | 587 | 153 | 10 | 1 | 565 | 1 | 572 | 0.0 | 756 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0730900 | G7JZQ0 | 98.053 | 565 | 11 | 0 | 1 | 565 | 1 | 565 | 0.0 | 1136 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054530 | Msa0730900 | 0.823946 | 1.053236e-53 | -8.615850e-47 |
| Msa0070430 | Msa0730900 | 0.806350 | 8.586094e-50 | -8.615850e-47 |
| Msa0074750 | Msa0730900 | 0.815408 | 9.389186e-52 | -8.615850e-47 |
| Msa0079920 | Msa0730900 | 0.805123 | 1.554202e-49 | -8.615850e-47 |
| Msa0606740 | Msa0730900 | 0.806054 | 9.908464e-50 | -8.615850e-47 |
| Msa0642720 | Msa0730900 | 0.810802 | 9.618093e-51 | -8.615850e-47 |
| Msa0730900 | Msa0743530 | 0.809211 | 2.116464e-50 | -8.615850e-47 |
| Msa0730900 | Msa0788120 | 0.810029 | 1.412507e-50 | -8.615850e-47 |
| Msa0730900 | Msa0869010 | 0.822255 | 2.612757e-53 | -8.615850e-47 |
| Msa0730900 | Msa0932350 | 0.803536 | 3.326588e-49 | -8.615850e-47 |
| Msa0730900 | Msa0969330 | 0.814700 | 1.348150e-51 | -8.615850e-47 |
| Msa0730900 | Msa0986920 | 0.804131 | 2.503318e-49 | -8.615850e-47 |
| Msa0730900 | Msa1036740 | 0.805171 | 1.518490e-49 | -8.615850e-47 |
| Msa0730900 | Msa1072600 | 0.806143 | 9.490908e-50 | -8.615850e-47 |
| Msa0730900 | Msa1127430 | 0.803268 | 3.780790e-49 | -8.615850e-47 |
| Msa0730900 | Msa1127540 | 0.810172 | 1.315750e-50 | -8.615850e-47 |
| Msa0730900 | Msa1176980 | 0.811899 | 5.558103e-51 | -8.615850e-47 |
| Msa0730900 | Msa1185130 | 0.800845 | 1.190740e-48 | -8.615850e-47 |
| Msa0730900 | Msa1188560 | 0.816527 | 5.281028e-52 | -8.615850e-47 |
| Msa0730900 | Msa1199290 | 0.828688 | 7.823891e-55 | -8.615850e-47 |
| Msa0730900 | Msa1201810 | 0.806091 | 9.735870e-50 | -8.615850e-47 |
| Msa0730900 | Msa1205480 | 0.822434 | 2.373617e-53 | -8.615850e-47 |
| Msa0730900 | Msa1228890 | 0.804892 | 1.736316e-49 | -8.615850e-47 |
| Msa0730900 | Msa1280560 | 0.813816 | 2.113445e-51 | -8.615850e-47 |
| Msa0730900 | Msa1299360 | 0.802850 | 4.612257e-49 | -8.615850e-47 |
| Msa0730900 | Msa1416260 | 0.803663 | 3.130492e-49 | -8.615850e-47 |
| Msa0730900 | Msa1426910 | 0.826757 | 2.277212e-54 | -8.615850e-47 |
| Msa0730900 | Msa1435260 | 0.802801 | 4.720741e-49 | -8.615850e-47 |
| Msa0133720 | Msa0730900 | 0.812476 | 4.159735e-51 | -8.615850e-47 |
| Msa0133820 | Msa0730900 | 0.811687 | 6.181414e-51 | -8.615850e-47 |
| Msa0152400 | Msa0730900 | 0.806699 | 7.247610e-50 | -8.615850e-47 |
| Msa0432070 | Msa0730900 | 0.802186 | 6.322303e-49 | -8.615850e-47 |
| Msa0281360 | Msa0730900 | 0.808318 | 3.284739e-50 | -8.615850e-47 |
| Msa0510290 | Msa0730900 | 0.805290 | 1.433368e-49 | -8.615850e-47 |
| Msa0516120 | Msa0730900 | 0.804492 | 2.105289e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0730900 | MtrunA17_Chr5g0431661 | 98.053 | 565 | 11 | 0 | 1 | 565 | 1 | 565 | 0.0 | 1136 |
| Msa0730900 | MtrunA17_Chr5g0437691 | 62.706 | 547 | 159 | 9 | 21 | 565 | 13 | 516 | 0.0 | 653 |
| Msa0730900 | MtrunA17_Chr1g0178331 | 25.714 | 420 | 253 | 11 | 135 | 550 | 27 | 391 | 2.29e-28 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0730900 | AT5G07120.1 | 67.632 | 587 | 153 | 10 | 1 | 565 | 1 | 572 | 0.0 | 756 |
| Msa0730900 | AT5G07120.2 | 67.632 | 587 | 153 | 10 | 1 | 565 | 1 | 572 | 0.0 | 756 |
| Msa0730900 | AT5G58440.1 | 67.119 | 590 | 160 | 10 | 1 | 563 | 1 | 583 | 0.0 | 740 |
| Msa0730900 | AT5G07120.3 | 67.438 | 562 | 146 | 10 | 1 | 540 | 1 | 547 | 0.0 | 716 |
| Msa0730900 | AT5G06140.1 | 25.768 | 423 | 249 | 9 | 135 | 550 | 25 | 389 | 6.24e-31 | 125 |
Find 160 sgRNAs with CRISPR-Local
Find 410 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGGCTTCATCTAAAATATT+TGG | 0.114952 | 5_1:+40816146 | Msa0730900:CDS |
| GCGTCTGCGTTAGGTGAATT+AGG | 0.169531 | 5_1:-40814435 | None:intergenic |
| GGAGAGACGATGGGTGAATT+AGG | 0.187986 | 5_1:+40815657 | Msa0730900:CDS |
| AGGACGAATTTACCGGATTT+TGG | 0.196435 | 5_1:+40814666 | Msa0730900:CDS |
| GGATTTGTTGAGGTTGTTTA+AGG | 0.204934 | 5_1:+40815070 | Msa0730900:CDS |
| GGCATCTTCAGTGGCTCTTA+TGG | 0.216954 | 5_1:-40816213 | None:intergenic |
| GGATGTGGCTTCGAGGGTTT+TGG | 0.256808 | 5_1:+40814962 | Msa0730900:CDS |
| CGGCTTCATCTAAAATATTT+GGG | 0.264556 | 5_1:+40816147 | Msa0730900:CDS |
| CGCAGGGGTGTAATGGTTAT+TGG | 0.290637 | 5_1:-40814007 | None:intergenic |
| TACGCTTTCTGATCGGTTAT+CGG | 0.311234 | 5_1:+40814731 | Msa0730900:CDS |
| GAAAGGATTTGTAGTTAATC+AGG | 0.312278 | 5_1:+40819246 | Msa0730900:CDS |
| GAGAATTACGGTTTCGAATC+CGG | 0.326585 | 5_1:+40814572 | Msa0730900:CDS |
| GGAGAAATATTTGAGGAGAT+TGG | 0.338535 | 5_1:+40814857 | Msa0730900:CDS |
| CGTCTGCGTTAGGTGAATTA+GGG | 0.338670 | 5_1:-40814434 | None:intergenic |
| GAGGATTAAGAAATTGAGTT+GGG | 0.350596 | 5_1:-40814061 | None:intergenic |
| TACGGTTTCGAATCCGGTTA+AGG | 0.354816 | 5_1:+40814578 | Msa0730900:CDS |
| TTCTGAGTATTTGAGAATTA+CGG | 0.359681 | 5_1:+40814560 | Msa0730900:CDS |
| TGAGAATGAAGAAGCTGTTT+CGG | 0.360286 | 5_1:+40815707 | Msa0730900:CDS |
| TAAGGAGTTGAAGCAGTCTA+TGG | 0.362442 | 5_1:+40815088 | Msa0730900:CDS |
| TGTTAAAGCACAGCAAGATA+TGG | 0.372932 | 5_1:+40815635 | Msa0730900:CDS |
| GAATTCTCTTGCTCCTTAAC+CGG | 0.373957 | 5_1:-40814591 | None:intergenic |
| GATACACTTCACGAATATCT+TGG | 0.384570 | 5_1:+40816011 | Msa0730900:CDS |
| TTGCCACTTCACTTCCCATC+TGG | 0.391103 | 5_1:+40813946 | Msa0730900:five_prime_UTR |
| TGGCGGATCATCCGGTGATT+CGG | 0.400285 | 5_1:+40814877 | Msa0730900:CDS |
| TTCTCAGACCGTGAAGCATT+TGG | 0.400601 | 5_1:+40815812 | Msa0730900:CDS |
| GAGAGACGATGGGTGAATTA+GGG | 0.402041 | 5_1:+40815658 | Msa0730900:CDS |
| CTGTGCTTTAACAAGTGATT+CGG | 0.402881 | 5_1:-40815625 | None:intergenic |
| AGCAGTCTATGGCGAATGAT+TGG | 0.406221 | 5_1:+40815099 | Msa0730900:CDS |
| GGGGTTTATTTGTGTGGTGG+TGG | 0.410771 | 5_1:-40814041 | None:intergenic |
| GTGAAAATTGCGTCTGCGTT+AGG | 0.416563 | 5_1:-40814444 | None:intergenic |
| AACTCGTTCCCTCCAAAATC+CGG | 0.417900 | 5_1:-40814678 | None:intergenic |
| GATGTGTTTGGCTGGTTCAT+AGG | 0.418497 | 5_1:+40819630 | Msa0730900:three_prime_UTR |
| GAAGCTGCCGAAGCAGTTGA+TGG | 0.437498 | 5_1:+40814995 | Msa0730900:CDS |
| GAGGAGATTGGCGGATCATC+CGG | 0.443190 | 5_1:+40814869 | Msa0730900:CDS |
| TCTATTTCAATCAACAATGA+TGG | 0.445153 | 5_1:+40814149 | Msa0730900:exon |
| TAAGAGTATTGTGGAGAGTC+AGG | 0.446853 | 5_1:+40814791 | Msa0730900:CDS |
| CTGAGAAAATAGCTAATGTC+TGG | 0.451585 | 5_1:+40819474 | Msa0730900:CDS |
| AGTTTCTTGCAAAGAAAGAA+AGG | 0.458734 | 5_1:+40815159 | Msa0730900:CDS |
| ATTATATACCAAATGCTTCA+CGG | 0.459102 | 5_1:-40815820 | None:intergenic |
| TGCCAATGCAGGAAAACAAT+AGG | 0.461698 | 5_1:+40819170 | Msa0730900:intron |
| ATCGCCGAGCTTCGTTTCAC+CGG | 0.464931 | 5_1:+40814359 | Msa0730900:CDS |
| GCAGTCTATGGCGAATGATT+GGG | 0.464967 | 5_1:+40815100 | Msa0730900:CDS |
| ATTAAGAAGGTTGGCGAATG+AGG | 0.465771 | 5_1:-40814080 | None:intergenic |
| GAGGGAACGAGTTCGGTGTT+CGG | 0.468491 | 5_1:+40814688 | Msa0730900:CDS |
| ACGAGTTCGGTGTTCGGAGA+AGG | 0.468650 | 5_1:+40814694 | Msa0730900:CDS |
| GCAAGAGCATGAACTATGAT+TGG | 0.468698 | 5_1:-40813927 | None:intergenic |
| TCATCGTTTGTTTCTGAAAG+AGG | 0.471210 | 5_1:-40814210 | None:intergenic |
| TGAGCAGAGGAGGGTGGCAT+TGG | 0.472519 | 5_1:+40814836 | Msa0730900:CDS |
| TTGTTGATTGAAATAGAAAG+TGG | 0.475206 | 5_1:-40814143 | None:intergenic |
| TACAACGAGGACGAATTTAC+CGG | 0.475654 | 5_1:+40814659 | Msa0730900:CDS |
| AATAAATCAAAAGATGTGTT+TGG | 0.477791 | 5_1:+40819618 | Msa0730900:three_prime_UTR |
| AAGCTGCCGAAGCAGTTGAT+GGG | 0.478618 | 5_1:+40814996 | Msa0730900:CDS |
| CTCTCCACAATACTCTTATC+CGG | 0.481829 | 5_1:-40814786 | None:intergenic |
| CATCGTTTGTTTCTGAAAGA+GGG | 0.483841 | 5_1:-40814209 | None:intergenic |
| AATCAAAAGATGTGTTTGGC+TGG | 0.485301 | 5_1:+40819622 | Msa0730900:three_prime_UTR |
| AATTGAGTGATTAAGAAGGT+TGG | 0.486680 | 5_1:-40814089 | None:intergenic |
| TCAAGGGAAGCTTCCGTTGG+TGG | 0.487398 | 5_1:+40814932 | Msa0730900:CDS |
| TAACGTGCGCAGGGGTGTAA+TGG | 0.490988 | 5_1:-40814014 | None:intergenic |
| AAATCCCTCCCACCTTTCGC+TGG | 0.496789 | 5_1:-40815053 | None:intergenic |
| GTTGGTGGGTTCGACGGATG+TGG | 0.498991 | 5_1:+40814947 | Msa0730900:CDS |
| AGGAGTTTGTTGAGCAGAGG+AGG | 0.499970 | 5_1:+40814826 | Msa0730900:CDS |
| TGAGTTGGGGTTTATTTGTG+TGG | 0.500058 | 5_1:-40814047 | None:intergenic |
| GAGTCAGGTGATGCAGAAGC+AGG | 0.501041 | 5_1:+40814806 | Msa0730900:CDS |
| GTTAAAGCACAGCAAGATAT+GGG | 0.501430 | 5_1:+40815636 | Msa0730900:CDS |
| TGAGGATTAAGAAATTGAGT+TGG | 0.503743 | 5_1:-40814062 | None:intergenic |
| CAAGGGAAGCTTCCGTTGGT+GGG | 0.504272 | 5_1:+40814933 | Msa0730900:CDS |
| ATCAAGGACTCGGAAGTTAG+AGG | 0.505613 | 5_1:+40816178 | Msa0730900:CDS |
| AATCAATGGTGCTTCTCAGC+AGG | 0.506291 | 5_1:+40815202 | Msa0730900:CDS |
| TGTCGGAGTATTAACACCAT+TGG | 0.510591 | 5_1:-40814490 | None:intergenic |
| TTCGACGGATGTGGCTTCGA+GGG | 0.511073 | 5_1:+40814956 | Msa0730900:CDS |
| TCGGAAGTTAGAGGAGCTAC+AGG | 0.514954 | 5_1:+40816187 | Msa0730900:CDS |
| GCTTCCGTTGGTGGGTTCGA+CGG | 0.515115 | 5_1:+40814941 | Msa0730900:CDS |
| GGTGGAGACTAACGTGCGCA+GGG | 0.517705 | 5_1:-40814023 | None:intergenic |
| TCATCACTCTTCCGAATCAC+CGG | 0.518186 | 5_1:-40814888 | None:intergenic |
| GTTTCTTGCAAAGAAAGAAA+GGG | 0.521397 | 5_1:+40815160 | Msa0730900:CDS |
| AAGGCTTGATAGAGAGAGGC+AGG | 0.522653 | 5_1:+40819204 | Msa0730900:CDS |
| AAGAACATGCAAGGACCAGA+TGG | 0.524455 | 5_1:-40813961 | None:intergenic |
| GACTTCTTAAACATGTTGAA+AGG | 0.525181 | 5_1:+40819229 | Msa0730900:CDS |
| ACAATACTCTTATCCGGCCT+CGG | 0.525234 | 5_1:-40814780 | None:intergenic |
| GCTGGTTGCACAACCTCACT+AGG | 0.526395 | 5_1:-40815035 | None:intergenic |
| TCGGAGAAGGTTTAAAGATG+TGG | 0.529269 | 5_1:+40814707 | Msa0730900:CDS |
| GAACTTGAACAACAAATCAA+TGG | 0.529805 | 5_1:+40815188 | Msa0730900:CDS |
| AATTCGAATTCGATTGTGCC+TGG | 0.532154 | 5_1:+40814609 | Msa0730900:CDS |
| TTCTAAGCCGCTTGTTGTCG+AGG | 0.533178 | 5_1:+40815127 | Msa0730900:CDS |
| GTTCGACGGATGTGGCTTCG+AGG | 0.539979 | 5_1:+40814955 | Msa0730900:CDS |
| GTTGGGGTTTATTTGTGTGG+TGG | 0.540351 | 5_1:-40814044 | None:intergenic |
| GCTTGTTGTCGAGGAAGATA+AGG | 0.541787 | 5_1:+40815136 | Msa0730900:CDS |
| CAGAGAATATGAGCGGATCA+AGG | 0.542532 | 5_1:+40816250 | Msa0730900:CDS |
| GAATACAGACATTCTGAGAA+TGG | 0.542825 | 5_1:-40819590 | None:intergenic |
| TGACTCTTGCATCTTTCACA+AGG | 0.545605 | 5_1:+40819736 | Msa0730900:three_prime_UTR |
| AGCAGGAGTTTGTTGAGCAG+AGG | 0.547480 | 5_1:+40814823 | Msa0730900:CDS |
| TGGTGGAGACTAACGTGCGC+AGG | 0.547646 | 5_1:-40814024 | None:intergenic |
| GCAAGATATGGGAGAGACGA+TGG | 0.548370 | 5_1:+40815647 | Msa0730900:CDS |
| TTATCTTCCTCGACAACAAG+CGG | 0.550409 | 5_1:-40815134 | None:intergenic |
| ACGAAGCTCGGCGATGAGAG+AGG | 0.553274 | 5_1:-40814351 | None:intergenic |
| TGAAATTCGCGGTGGTGCTG+CGG | 0.556521 | 5_1:-40814408 | None:intergenic |
| GGTTAATTGAGTGATTAAGA+AGG | 0.560657 | 5_1:-40814093 | None:intergenic |
| GCCGAGCTTCGTTTCACCGG+TGG | 0.562127 | 5_1:+40814362 | Msa0730900:CDS |
| GTTGTGCAACCAGCGAAAGG+TGG | 0.564199 | 5_1:+40815044 | Msa0730900:CDS |
| CAGTCTATGGCGAATGATTG+GGG | 0.564990 | 5_1:+40815101 | Msa0730900:CDS |
| GGTGTAATGGTTATTGGAGA+TGG | 0.565697 | 5_1:-40814001 | None:intergenic |
| TGGCATTGGAGAAATATTTG+AGG | 0.566546 | 5_1:+40814850 | Msa0730900:CDS |
| GGCTTCATCTAAAATATTTG+GGG | 0.566719 | 5_1:+40816148 | Msa0730900:CDS |
| CGGTTATCGGAGGCGTATCG+CGG | 0.566733 | 5_1:+40814744 | Msa0730900:CDS |
| GAAATATTTGAGGAGATTGG+CGG | 0.569501 | 5_1:+40814860 | Msa0730900:CDS |
| GAGTGTTATTGCTCCTAGTG+AGG | 0.570189 | 5_1:+40815022 | Msa0730900:CDS |
| ACAATAGGAGTGAACTTGAA+AGG | 0.570539 | 5_1:+40819185 | Msa0730900:CDS |
| GACGATGGGTGAATTAGGGT+TGG | 0.575302 | 5_1:+40815662 | Msa0730900:CDS |
| GAAAATTTAAATCAACAACT+AGG | 0.577306 | 5_1:-40819548 | None:intergenic |
| AATTCGCGGTGGTGCTGCGG+CGG | 0.577596 | 5_1:-40814405 | None:intergenic |
| GGAAGATGATTCACCGTCGA+AGG | 0.578144 | 5_1:-40814469 | None:intergenic |
| GTTTGTTGAGCAGAGGAGGG+TGG | 0.580524 | 5_1:+40814830 | Msa0730900:CDS |
| TTGTGCAACCAGCGAAAGGT+GGG | 0.583999 | 5_1:+40815045 | Msa0730900:CDS |
| ATGTGGTTACGCTTTCTGAT+CGG | 0.584912 | 5_1:+40814724 | Msa0730900:CDS |
| GTAAATCATACTCTAACTAC+CGG | 0.585584 | 5_1:+40814283 | Msa0730900:CDS |
| AGCTCGGCGATGAGAGAGGA+TGG | 0.586188 | 5_1:-40814347 | None:intergenic |
| GGACCAGATGGGAAGTGAAG+TGG | 0.589823 | 5_1:-40813949 | None:intergenic |
| GGAGTTTGTTGAGCAGAGGA+GGG | 0.590410 | 5_1:+40814827 | Msa0730900:CDS |
| GGTTCAAGGGAAGCTTCCGT+TGG | 0.590903 | 5_1:+40814929 | Msa0730900:CDS |
| CAAGAGCATGAACTATGATT+GGG | 0.591947 | 5_1:-40813926 | None:intergenic |
| AAGGTGGGAGGGATTTGTTG+AGG | 0.594759 | 5_1:+40815060 | Msa0730900:CDS |
| GGTTATCGGAGGCGTATCGC+GGG | 0.598439 | 5_1:+40814745 | Msa0730900:CDS |
| CAAGATATGGGAGAGACGAT+GGG | 0.599204 | 5_1:+40815648 | Msa0730900:CDS |
| TGCAACCAGCGAAAGGTGGG+AGG | 0.602060 | 5_1:+40815048 | Msa0730900:CDS |
| GGGGTGACAAATCAAGGACT+CGG | 0.602420 | 5_1:+40816168 | Msa0730900:CDS |
| AGCTGCCGAAGCAGTTGATG+GGG | 0.602715 | 5_1:+40814997 | Msa0730900:CDS |
| AGGATTAAGAAATTGAGTTG+GGG | 0.603785 | 5_1:-40814060 | None:intergenic |
| AAAGTTGTTGAAGACACAAG+TGG | 0.605480 | 5_1:+40819500 | Msa0730900:CDS |
| AATGGTTATTGGAGATGGTG+AGG | 0.605781 | 5_1:-40813996 | None:intergenic |
| GACGGTGAATCATCTTCCAA+TGG | 0.607222 | 5_1:+40814474 | Msa0730900:CDS |
| TTGAAAGGCTTGATAGAGAG+AGG | 0.608463 | 5_1:+40819200 | Msa0730900:CDS |
| AGAACATGCAAGGACCAGAT+GGG | 0.609941 | 5_1:-40813960 | None:intergenic |
| AAGAAGAAGAAGAACATGCA+AGG | 0.610687 | 5_1:-40813970 | None:intergenic |
| ACACGAAGCTTCTCCGATGG+AGG | 0.616897 | 5_1:+40814510 | Msa0730900:CDS |
| AGCTGTTTCGGAATCTCAGA+GGG | 0.618180 | 5_1:+40815719 | Msa0730900:CDS |
| CCGACACGAAGCTTCTCCGA+TGG | 0.619775 | 5_1:+40814507 | Msa0730900:CDS |
| TGCTGCGGCGGAGATAAAAG+TGG | 0.620718 | 5_1:-40814393 | None:intergenic |
| GAGGTTGTGCAACCAGCGAA+AGG | 0.622446 | 5_1:+40815041 | Msa0730900:CDS |
| TCCACCGGTGAAACGAAGCT+CGG | 0.624045 | 5_1:-40814363 | None:intergenic |
| AAAAGTGGATCGGAATCCAC+CGG | 0.627675 | 5_1:-40814378 | None:intergenic |
| CGGCGGAGATAAAAGTGGAT+CGG | 0.629103 | 5_1:-40814388 | None:intergenic |
| GCTTTCTGATCGGTTATCGG+AGG | 0.632759 | 5_1:+40814734 | Msa0730900:CDS |
| ATTGTGAGAATCAGAGAGCG+TGG | 0.638181 | 5_1:-40814316 | None:intergenic |
| GTACGAGCTACTGACATGAA+AGG | 0.639142 | 5_1:+40815741 | Msa0730900:CDS |
| GCAACCAGCGAAAGGTGGGA+GGG | 0.640491 | 5_1:+40815049 | Msa0730900:CDS |
| AGAGCGTGGACATCACGCTC+CGG | 0.645909 | 5_1:-40814302 | None:intergenic |
| CCATCGGAGAAGCTTCGTGT+CGG | 0.646506 | 5_1:-40814507 | None:intergenic |
| GAGGCCGGATAAGAGTATTG+TGG | 0.649489 | 5_1:+40814782 | Msa0730900:CDS |
| ATACTCTTATCCGGCCTCGG+CGG | 0.654820 | 5_1:-40814777 | None:intergenic |
| GCTGCCGAAGCAGTTGATGG+GGG | 0.662311 | 5_1:+40814998 | Msa0730900:CDS |
| ACATCCGTCGAACCCACCAA+CGG | 0.664667 | 5_1:-40814945 | None:intergenic |
| GTGGAGACTAACGTGCGCAG+GGG | 0.667165 | 5_1:-40814022 | None:intergenic |
| AAGCTGTTTCGGAATCTCAG+AGG | 0.673178 | 5_1:+40815718 | Msa0730900:CDS |
| GCTTCATCTAAAATATTTGG+GGG | 0.680484 | 5_1:+40816149 | Msa0730900:CDS |
| GTAACATAACTATTACTACC+AGG | 0.682772 | 5_1:-40814627 | None:intergenic |
| TTGCAATCAGAGAATATGAG+CGG | 0.689296 | 5_1:+40816243 | Msa0730900:CDS |
| CGAAAATAACAACACCACAG+AGG | 0.704703 | 5_1:+40814176 | Msa0730900:CDS |
| TCTATGGCGAATGATTGGGG+TGG | 0.719791 | 5_1:+40815104 | Msa0730900:CDS |
| AGGGTGAAAATGTTCCTCTG+TGG | 0.777324 | 5_1:-40814190 | None:intergenic |
| TTACGTATTTGATTACAACG+AGG | 0.816379 | 5_1:+40814646 | Msa0730900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTAAAAAAGATTAGTTT+AGG | - | chr5_1:40814117-40814136 | None:intergenic | 10.0% |
| !!! | TTTAATTGTTTTTTTTGATT+TGG | + | chr5_1:40816279-40816298 | Msa0730900:intron | 10.0% |
| !! | TTAAATTTACATGAAAAATT+AGG | - | chr5_1:40816724-40816743 | None:intergenic | 10.0% |
| !!! | ATCTATTTTAATGATATTTT+TGG | + | chr5_1:40816779-40816798 | Msa0730900:intron | 10.0% |
| !!! | ATTATTTTATTGATGTTATG+AGG | + | chr5_1:40815544-40815563 | Msa0730900:intron | 15.0% |
| !! | TTCATGTAAATTTAAGTATT+TGG | + | chr5_1:40816729-40816748 | Msa0730900:intron | 15.0% |
| !!! | TAAATTTAAGTATTTGGTTT+GGG | + | chr5_1:40816735-40816754 | Msa0730900:intron | 15.0% |
| !! | AAAAAATAATATACCACTAT+AGG | - | chr5_1:40817115-40817134 | None:intergenic | 15.0% |
| !!! | TATTTTTTTGTTTGAAAACT+CGG | + | chr5_1:40817127-40817146 | Msa0730900:intron | 15.0% |
| !! | ATATGAAAATATGAAAACTT+TGG | + | chr5_1:40817949-40817968 | Msa0730900:intron | 15.0% |
| !!! | AGGACAAAATAATAAATTTT+TGG | + | chr5_1:40818306-40818325 | Msa0730900:intron | 15.0% |
| !! | AATAAGCTAAAAACAGTTTA+TGG | - | chr5_1:40815383-40815402 | None:intergenic | 20.0% |
| !! | AATAGCAATCATATTTGTAA+AGG | - | chr5_1:40816477-40816496 | None:intergenic | 20.0% |
| !! | TTAAGATGTTAGAATTGTTA+GGG | + | chr5_1:40816641-40816660 | Msa0730900:intron | 20.0% |
| !!! | ATTATTAGTCTTATTGTTTG+TGG | + | chr5_1:40816665-40816684 | Msa0730900:intron | 20.0% |
| !!! | TTATTAGTCTTATTGTTTGT+GGG | + | chr5_1:40816666-40816685 | Msa0730900:intron | 20.0% |
| !! | GTAAATTTAAGTATTTGGTT+TGG | + | chr5_1:40816734-40816753 | Msa0730900:intron | 20.0% |
| !!! | AAGTTAAGAATTCAAGTTTT+GGG | - | chr5_1:40816845-40816864 | None:intergenic | 20.0% |
| !! | AATAACTGTAGTATACAATA+CGG | - | chr5_1:40817398-40817417 | None:intergenic | 20.0% |
| !! | TATTGTATACTACAGTTATT+AGG | + | chr5_1:40817398-40817417 | Msa0730900:intron | 20.0% |
| !! | TGATATTAATGTAAATGAGA+TGG | + | chr5_1:40818340-40818359 | Msa0730900:intron | 20.0% |
| !! | ACAACCAAAATATTAAAAGA+TGG | + | chr5_1:40818504-40818523 | Msa0730900:intron | 20.0% |
| !!! | TCATCCATCTTTTAATATTT+TGG | - | chr5_1:40818511-40818530 | None:intergenic | 20.0% |
| !!! | ATGTTTTAAAATGTTATACC+TGG | + | chr5_1:40819026-40819045 | Msa0730900:intron | 20.0% |
| !! | TCTGATTAACTTAAGTTAAT+AGG | + | chr5_1:40819442-40819461 | Msa0730900:intron | 20.0% |
| !! | ATTAACTTAAGTTAATAGGT+GGG | + | chr5_1:40819446-40819465 | Msa0730900:intron | 20.0% |
| !! | GAAAATTTAAATCAACAACT+AGG | - | chr5_1:40819551-40819570 | None:intergenic | 20.0% |
| !! | AATAAATCAAAAGATGTGTT+TGG | + | chr5_1:40819618-40819637 | Msa0730900:three_prime_UTR | 20.0% |
| !! | TTGTTGATTGAAATAGAAAG+TGG | - | chr5_1:40814146-40814165 | None:intergenic | 25.0% |
| ! | TCTATTTCAATCAACAATGA+TGG | + | chr5_1:40814149-40814168 | Msa0730900:exon | 25.0% |
| ! | TTCTGAGTATTTGAGAATTA+CGG | + | chr5_1:40814560-40814579 | Msa0730900:CDS | 25.0% |
| ! | ATTATATACCAAATGCTTCA+CGG | - | chr5_1:40815823-40815842 | None:intergenic | 25.0% |
| ! | TGCACTTTCCTTAATAATAA+CGG | + | chr5_1:40815934-40815953 | Msa0730900:intron | 25.0% |
| ! | CAACAATTAAACCTATTTAG+TGG | - | chr5_1:40815965-40815984 | None:intergenic | 25.0% |
| !! | TTTTAAATCGCAAACTATTC+AGG | - | chr5_1:40816346-40816365 | None:intergenic | 25.0% |
| !! | GAATAGTTTGCGATTTAAAA+TGG | + | chr5_1:40816346-40816365 | Msa0730900:intron | 25.0% |
| ! | GTTAAGATGTTAGAATTGTT+AGG | + | chr5_1:40816640-40816659 | Msa0730900:intron | 25.0% |
| !!! | CAAGTTAAGAATTCAAGTTT+TGG | - | chr5_1:40816846-40816865 | None:intergenic | 25.0% |
| ! | CAAAACTTGAATTCTTAACT+TGG | + | chr5_1:40816844-40816863 | Msa0730900:intron | 25.0% |
| ! | AATGAACTCAAAAAAGAGAA+AGG | - | chr5_1:40816888-40816907 | None:intergenic | 25.0% |
| ! | GAGAGAATAATATAGGAATT+AGG | - | chr5_1:40816937-40816956 | None:intergenic | 25.0% |
| ! | AGAGAATAATACATGAATAG+CGG | - | chr5_1:40816959-40816978 | None:intergenic | 25.0% |
| ! | TTGCATGATAACTTAAAGTT+TGG | + | chr5_1:40816989-40817008 | Msa0730900:intron | 25.0% |
| ! | TGCATGATAACTTAAAGTTT+GGG | + | chr5_1:40816990-40817009 | Msa0730900:intron | 25.0% |
| !! | TATAGAGCTATGCTTTAAAT+GGG | - | chr5_1:40817213-40817232 | None:intergenic | 25.0% |
| !! | ATATAGAGCTATGCTTTAAA+TGG | - | chr5_1:40817214-40817233 | None:intergenic | 25.0% |
| !! | ATTTAAAGCATAGCTCTATA+TGG | + | chr5_1:40817213-40817232 | Msa0730900:intron | 25.0% |
| ! | TACTACAGTTATTAGGTTAT+TGG | + | chr5_1:40817405-40817424 | Msa0730900:intron | 25.0% |
| ! | TATACTAGTGAGTAGTAATT+AGG | - | chr5_1:40817491-40817510 | None:intergenic | 25.0% |
| ! | TACTACTCACTAGTATAAAT+TGG | + | chr5_1:40817494-40817513 | Msa0730900:intron | 25.0% |
| !! | CTAGTATAAATTGGAGTTTT+AGG | + | chr5_1:40817503-40817522 | Msa0730900:intron | 25.0% |
| !!! | TAAATTGGAGTTTTAGGTTT+TGG | + | chr5_1:40817509-40817528 | Msa0730900:intron | 25.0% |
| !!! | AAATTGGAGTTTTAGGTTTT+GGG | + | chr5_1:40817510-40817529 | Msa0730900:intron | 25.0% |
| ! | ATTCAATGTGCTGAATTTAT+AGG | + | chr5_1:40817542-40817561 | Msa0730900:intron | 25.0% |
| ! | TTCAATGTGCTGAATTTATA+GGG | + | chr5_1:40817543-40817562 | Msa0730900:intron | 25.0% |
| ! | ATGATGAACGAACTATATAA+CGG | - | chr5_1:40817616-40817635 | None:intergenic | 25.0% |
| ! | TTCAAATTTCAAATCCAAAC+AGG | - | chr5_1:40817867-40817886 | None:intergenic | 25.0% |
| ! | TTATATGGTCTATATTGTCA+AGG | + | chr5_1:40817926-40817945 | Msa0730900:intron | 25.0% |
| ! | GTATGATAACTTAAAGTCAA+AGG | + | chr5_1:40818025-40818044 | Msa0730900:intron | 25.0% |
| ! | GCTTGTATATTACAGTTATT+AGG | + | chr5_1:40818181-40818200 | Msa0730900:intron | 25.0% |
| !! | ATTACAGTTATTAGGTTGTT+AGG | + | chr5_1:40818189-40818208 | Msa0730900:intron | 25.0% |
| ! | ACTTGAACTAATTACTAGTT+AGG | + | chr5_1:40818213-40818232 | Msa0730900:intron | 25.0% |
| ! | TATTAATGTAAATGAGATGG+TGG | + | chr5_1:40818343-40818362 | Msa0730900:intron | 25.0% |
| ! | AGTATCTTAGATTATCTCTA+AGG | - | chr5_1:40818467-40818486 | None:intergenic | 25.0% |
| !!! | AATTTTAATGCAAGAGAATC+AGG | - | chr5_1:40818600-40818619 | None:intergenic | 25.0% |
| ! | TTTATTTGTAAAATCCCATC+TGG | + | chr5_1:40818663-40818682 | Msa0730900:intron | 25.0% |
| ! | TTAGTCGAAAATCTTCAATT+AGG | + | chr5_1:40818686-40818705 | Msa0730900:intron | 25.0% |
| !! | TGATAATGTTTCACAATAGT+AGG | - | chr5_1:40818716-40818735 | None:intergenic | 25.0% |
| ! | AAATACTGTATTCAACAAAC+TGG | + | chr5_1:40818747-40818766 | Msa0730900:intron | 25.0% |
| ! | CTATGTAATATGATTTCAGT+GGG | + | chr5_1:40818770-40818789 | Msa0730900:intron | 25.0% |
| ! | AAACATCATCCATTAAAAGT+AGG | - | chr5_1:40818903-40818922 | None:intergenic | 25.0% |
| ! | AATTATAAGATGATGAAGTC+TGG | - | chr5_1:40819003-40819022 | None:intergenic | 25.0% |
| ! | GATTAACTTAAGTTAATAGG+TGG | + | chr5_1:40819445-40819464 | Msa0730900:intron | 25.0% |
| ! | AGGATTAAGAAATTGAGTTG+GGG | - | chr5_1:40814063-40814082 | None:intergenic | 30.0% |
| GAGGATTAAGAAATTGAGTT+GGG | - | chr5_1:40814064-40814083 | None:intergenic | 30.0% | |
| TGAGGATTAAGAAATTGAGT+TGG | - | chr5_1:40814065-40814084 | None:intergenic | 30.0% | |
| AATTGAGTGATTAAGAAGGT+TGG | - | chr5_1:40814092-40814111 | None:intergenic | 30.0% | |
| GGTTAATTGAGTGATTAAGA+AGG | - | chr5_1:40814096-40814115 | None:intergenic | 30.0% | |
| GTAAATCATACTCTAACTAC+CGG | + | chr5_1:40814283-40814302 | Msa0730900:CDS | 30.0% | |
| !!! | AATTAGGGTTTTGAAATTCG+CGG | - | chr5_1:40814422-40814441 | None:intergenic | 30.0% |
| GTAACATAACTATTACTACC+AGG | - | chr5_1:40814630-40814649 | None:intergenic | 30.0% | |
| TTACGTATTTGATTACAACG+AGG | + | chr5_1:40814646-40814665 | Msa0730900:CDS | 30.0% | |
| AGTTTCTTGCAAAGAAAGAA+AGG | + | chr5_1:40815159-40815178 | Msa0730900:CDS | 30.0% | |
| GTTTCTTGCAAAGAAAGAAA+GGG | + | chr5_1:40815160-40815179 | Msa0730900:CDS | 30.0% | |
| GAACTTGAACAACAAATCAA+TGG | + | chr5_1:40815188-40815207 | Msa0730900:CDS | 30.0% | |
| TATACTTCTATGAGTCTGTT+TGG | + | chr5_1:40815275-40815294 | Msa0730900:intron | 30.0% | |
| !! | CTTATTTTCATAAGCTCTGT+AGG | + | chr5_1:40815397-40815416 | Msa0730900:intron | 30.0% |
| TTATTGATGTTATGAGGATG+TGG | + | chr5_1:40815550-40815569 | Msa0730900:intron | 30.0% | |
| CAAATATATGTACCATAGCT+TGG | + | chr5_1:40815892-40815911 | Msa0730900:intron | 30.0% | |
| GCACTTTCCTTAATAATAAC+GGG | + | chr5_1:40815935-40815954 | Msa0730900:intron | 30.0% | |
| ! | TTTTCCATTTTATGCATAGC+AGG | + | chr5_1:40815989-40816008 | Msa0730900:intron | 30.0% |
| ! | CGGCTTCATCTAAAATATTT+GGG | + | chr5_1:40816147-40816166 | Msa0730900:CDS | 30.0% |
| ! | GGCTTCATCTAAAATATTTG+GGG | + | chr5_1:40816148-40816167 | Msa0730900:CDS | 30.0% |
| ! | GCTTCATCTAAAATATTTGG+GGG | + | chr5_1:40816149-40816168 | Msa0730900:CDS | 30.0% |
| ! | TTCTCTGATTGCAACATTTT+TGG | - | chr5_1:40816237-40816256 | None:intergenic | 30.0% |
| GACACAAAATACAACTTTGA+TGG | - | chr5_1:40816425-40816444 | None:intergenic | 30.0% | |
| GATAACAAATGACCAATCAT+GGG | - | chr5_1:40816455-40816474 | None:intergenic | 30.0% | |
| ! | TTAACTTGGTATCATTTACC+AGG | + | chr5_1:40816858-40816877 | Msa0730900:intron | 30.0% |
| TAACTTGGTATCATTTACCA+GGG | + | chr5_1:40816859-40816878 | Msa0730900:intron | 30.0% | |
| ! | AATAGCGGAGAGAATAATAT+AGG | - | chr5_1:40816944-40816963 | None:intergenic | 30.0% |
| AGAAAACATTTCATCTGCTT+GGG | + | chr5_1:40817063-40817082 | Msa0730900:intron | 30.0% | |
| ATTAGATTAGGTTCCTATAG+TGG | + | chr5_1:40817099-40817118 | Msa0730900:intron | 30.0% | |
| !! | GTCATTTTGTTAGTAAGCTT+TGG | + | chr5_1:40817427-40817446 | Msa0730900:intron | 30.0% |
| ! | GACTGTGGAGTAATTTTATA+TGG | + | chr5_1:40817911-40817930 | Msa0730900:intron | 30.0% |
| AAAACTTTGGTCATCTGTAA+AGG | + | chr5_1:40817962-40817981 | Msa0730900:intron | 30.0% | |
| ! | TGTTCTGGTTATTTGATTAG+AGG | + | chr5_1:40817996-40818015 | Msa0730900:intron | 30.0% |
| TTGTAACAACTAAAGCTTAC+AGG | + | chr5_1:40818154-40818173 | Msa0730900:intron | 30.0% | |
| TGTAACAACTAAAGCTTACA+GGG | + | chr5_1:40818155-40818174 | Msa0730900:intron | 30.0% | |
| !! | ACTAGTTAGGTTCTAGATTT+AGG | + | chr5_1:40818226-40818245 | Msa0730900:intron | 30.0% |
| !! | CTAGTTAGGTTCTAGATTTA+GGG | + | chr5_1:40818227-40818246 | Msa0730900:intron | 30.0% |
| TACGACTCAAGTATTCTATA+AGG | - | chr5_1:40818397-40818416 | None:intergenic | 30.0% | |
| GCTATGTAATATGATTTCAG+TGG | + | chr5_1:40818769-40818788 | Msa0730900:intron | 30.0% | |
| TTCATTAAACAAAGCAACAG+AGG | - | chr5_1:40819141-40819160 | None:intergenic | 30.0% | |
| GACTTCTTAAACATGTTGAA+AGG | + | chr5_1:40819229-40819248 | Msa0730900:CDS | 30.0% | |
| GAAAGGATTTGTAGTTAATC+AGG | + | chr5_1:40819246-40819265 | Msa0730900:CDS | 30.0% | |
| AAGAAGAAGAAGAACATGCA+AGG | - | chr5_1:40813973-40813992 | None:intergenic | 35.0% | |
| !!! | CTCTGTGGTGTTGTTATTTT+CGG | - | chr5_1:40814178-40814197 | None:intergenic | 35.0% |
| !! | CATCGTTTGTTTCTGAAAGA+GGG | - | chr5_1:40814212-40814231 | None:intergenic | 35.0% |
| !! | TCATCGTTTGTTTCTGAAAG+AGG | - | chr5_1:40814213-40814232 | None:intergenic | 35.0% |
| ! | TGGCATTGGAGAAATATTTG+AGG | + | chr5_1:40814850-40814869 | Msa0730900:CDS | 35.0% |
| GGAGAAATATTTGAGGAGAT+TGG | + | chr5_1:40814857-40814876 | Msa0730900:CDS | 35.0% | |
| GAAATATTTGAGGAGATTGG+CGG | + | chr5_1:40814860-40814879 | Msa0730900:CDS | 35.0% | |
| !! | TGAGTTTAGAGTGTTTTTGC+AGG | + | chr5_1:40814908-40814927 | Msa0730900:CDS | 35.0% |
| !! | GGATTTGTTGAGGTTGTTTA+AGG | + | chr5_1:40815070-40815089 | Msa0730900:CDS | 35.0% |
| ACTTATTTGAACTGAACCAC+TGG | + | chr5_1:40815302-40815321 | Msa0730900:intron | 35.0% | |
| TTCATAAGCTCTGTAGGTTT+AGG | + | chr5_1:40815403-40815422 | Msa0730900:intron | 35.0% | |
| CTGTGCTTTAACAAGTGATT+CGG | - | chr5_1:40815628-40815647 | None:intergenic | 35.0% | |
| TGTTAAAGCACAGCAAGATA+TGG | + | chr5_1:40815635-40815654 | Msa0730900:CDS | 35.0% | |
| GTTAAAGCACAGCAAGATAT+GGG | + | chr5_1:40815636-40815655 | Msa0730900:CDS | 35.0% | |
| TGAGAATGAAGAAGCTGTTT+CGG | + | chr5_1:40815707-40815726 | Msa0730900:CDS | 35.0% | |
| TGTAAGAATATGCCAAGCTA+TGG | - | chr5_1:40815907-40815926 | None:intergenic | 35.0% | |
| AGCTTGGCATATTCTTACAA+AGG | + | chr5_1:40815908-40815927 | Msa0730900:intron | 35.0% | |
| TGGATTGCCCGTTATTATTA+AGG | - | chr5_1:40815945-40815964 | None:intergenic | 35.0% | |
| GTATCCTGCTATGCATAAAA+TGG | - | chr5_1:40815996-40816015 | None:intergenic | 35.0% | |
| GATACACTTCACGAATATCT+TGG | + | chr5_1:40816011-40816030 | Msa0730900:CDS | 35.0% | |
| ! | TTTTTCTGCTCTTGATTGCA+AGG | - | chr5_1:40816120-40816139 | None:intergenic | 35.0% |
| AAGAGCAGAAAAACTTGAAG+CGG | + | chr5_1:40816127-40816146 | Msa0730900:CDS | 35.0% | |
| ! | GCGGCTTCATCTAAAATATT+TGG | + | chr5_1:40816146-40816165 | Msa0730900:CDS | 35.0% |
| !!! | AACATTTTTGGCATCTTCAG+TGG | - | chr5_1:40816225-40816244 | None:intergenic | 35.0% |
| TTGCAATCAGAGAATATGAG+CGG | + | chr5_1:40816243-40816262 | Msa0730900:CDS | 35.0% | |
| ! | ATACAACTTTGATGGATCTC+AGG | - | chr5_1:40816417-40816436 | None:intergenic | 35.0% |
| GGATAACAAATGACCAATCA+TGG | - | chr5_1:40816456-40816475 | None:intergenic | 35.0% | |
| TCAATGTAGATGCATATAGC+AGG | - | chr5_1:40816604-40816623 | None:intergenic | 35.0% | |
| !!! | AGAATTCAAGTTTTGGGTCA+GGG | - | chr5_1:40816839-40816858 | None:intergenic | 35.0% |
| !!! | AAGAATTCAAGTTTTGGGTC+AGG | - | chr5_1:40816840-40816859 | None:intergenic | 35.0% |
| AGTTATCATGCAATCAACAG+AGG | - | chr5_1:40816982-40817001 | None:intergenic | 35.0% | |
| TCTTCAACCTTTCACTTCAA+AGG | - | chr5_1:40817039-40817058 | None:intergenic | 35.0% | |
| CAGAAAACATTTCATCTGCT+TGG | + | chr5_1:40817062-40817081 | Msa0730900:intron | 35.0% | |
| ! | TGTGTGTGGAGTATTAGATT+AGG | + | chr5_1:40817087-40817106 | Msa0730900:intron | 35.0% |
| AAAACCATAGGAACCCATTA+GGG | - | chr5_1:40817332-40817351 | None:intergenic | 35.0% | |
| TAAAACCATAGGAACCCATT+AGG | - | chr5_1:40817333-40817352 | None:intergenic | 35.0% | |
| CATGAGACAGATAAAACCAT+AGG | - | chr5_1:40817344-40817363 | None:intergenic | 35.0% | |
| TTTATCTGTCTCATGTTTGC+AGG | + | chr5_1:40817349-40817368 | Msa0730900:intron | 35.0% | |
| !! | AATTGATTTCCCTCCCTTTT+TGG | + | chr5_1:40817640-40817659 | Msa0730900:intron | 35.0% |
| TAGATGACTTTGTTCCAACT+TGG | + | chr5_1:40817731-40817750 | Msa0730900:intron | 35.0% | |
| AGATGACTTTGTTCCAACTT+GGG | + | chr5_1:40817732-40817751 | Msa0730900:intron | 35.0% | |
| AATAACCAGAACACTGAGTA+AGG | - | chr5_1:40817989-40818008 | None:intergenic | 35.0% | |
| TCTGGTTATTTGATTAGAGG+TGG | + | chr5_1:40817999-40818018 | Msa0730900:intron | 35.0% | |
| CTGGTTATTTGATTAGAGGT+GGG | + | chr5_1:40818000-40818019 | Msa0730900:intron | 35.0% | |
| CGAGTAGATGAAATGGTTTA+TGG | - | chr5_1:40818053-40818072 | None:intergenic | 35.0% | |
| GTAACAACTAAAGCTTACAG+GGG | + | chr5_1:40818156-40818175 | Msa0730900:intron | 35.0% | |
| ! | AGATTTTCGACTAACCAGAT+GGG | - | chr5_1:40818680-40818699 | None:intergenic | 35.0% |
| ! | AAGATTTTCGACTAACCAGA+TGG | - | chr5_1:40818681-40818700 | None:intergenic | 35.0% |
| ! | GTTTAGTCTTTCATGCATTC+TGG | + | chr5_1:40818967-40818986 | Msa0730900:intron | 35.0% |
| !! | TCTTTCATGCATTCTGGTTT+GGG | + | chr5_1:40818973-40818992 | Msa0730900:intron | 35.0% |
| AATGTTATACCTGGCATTTC+TGG | + | chr5_1:40819035-40819054 | Msa0730900:intron | 35.0% | |
| ACAGAGGAAATAGACAAGAA+GGG | - | chr5_1:40819125-40819144 | None:intergenic | 35.0% | |
| AACAGAGGAAATAGACAAGA+AGG | - | chr5_1:40819126-40819145 | None:intergenic | 35.0% | |
| ACAATAGGAGTGAACTTGAA+AGG | + | chr5_1:40819185-40819204 | Msa0730900:CDS | 35.0% | |
| TGAACACAGATCATTCAAGA+AGG | - | chr5_1:40819301-40819320 | None:intergenic | 35.0% | |
| CTTGAATGATCTGTGTTCAT+CGG | + | chr5_1:40819302-40819321 | Msa0730900:intron | 35.0% | |
| TGTAAGCAGGTCTAATCTTA+TGG | + | chr5_1:40819327-40819346 | Msa0730900:intron | 35.0% | |
| CTGAGAAAATAGCTAATGTC+TGG | + | chr5_1:40819474-40819493 | Msa0730900:CDS | 35.0% | |
| AAAGTTGTTGAAGACACAAG+TGG | + | chr5_1:40819500-40819519 | Msa0730900:CDS | 35.0% | |
| ! | GAATACAGACATTCTGAGAA+TGG | - | chr5_1:40819593-40819612 | None:intergenic | 35.0% |
| AATCAAAAGATGTGTTTGGC+TGG | + | chr5_1:40819622-40819641 | Msa0730900:three_prime_UTR | 35.0% | |
| AATGGTTATTGGAGATGGTG+AGG | - | chr5_1:40813999-40814018 | None:intergenic | 40.0% | |
| GGTGTAATGGTTATTGGAGA+TGG | - | chr5_1:40814004-40814023 | None:intergenic | 40.0% | |
| ! | TGAGTTGGGGTTTATTTGTG+TGG | - | chr5_1:40814050-40814069 | None:intergenic | 40.0% |
| ATTAAGAAGGTTGGCGAATG+AGG | - | chr5_1:40814083-40814102 | None:intergenic | 40.0% | |
| CGAAAATAACAACACCACAG+AGG | + | chr5_1:40814176-40814195 | Msa0730900:CDS | 40.0% | |
| ! | GCAATTTTCACTTCCTTCGA+CGG | + | chr5_1:40814456-40814475 | Msa0730900:CDS | 40.0% |
| ! | TGTCGGAGTATTAACACCAT+TGG | - | chr5_1:40814493-40814512 | None:intergenic | 40.0% |
| TCTCGAAAAAACTCCTCCAT+CGG | - | chr5_1:40814526-40814545 | None:intergenic | 40.0% | |
| !!! | TGGAGGAGTTTTTTCGAGAT+CGG | + | chr5_1:40814527-40814546 | Msa0730900:CDS | 40.0% |
| GAGAATTACGGTTTCGAATC+CGG | + | chr5_1:40814572-40814591 | Msa0730900:CDS | 40.0% | |
| GAATTCTCTTGCTCCTTAAC+CGG | - | chr5_1:40814594-40814613 | None:intergenic | 40.0% | |
| AATTCGAATTCGATTGTGCC+TGG | + | chr5_1:40814609-40814628 | Msa0730900:CDS | 40.0% | |
| TACAACGAGGACGAATTTAC+CGG | + | chr5_1:40814659-40814678 | Msa0730900:CDS | 40.0% | |
| ! | AGGACGAATTTACCGGATTT+TGG | + | chr5_1:40814666-40814685 | Msa0730900:CDS | 40.0% |
| ! | ACGAATTTACCGGATTTTGG+AGG | + | chr5_1:40814669-40814688 | Msa0730900:CDS | 40.0% |
| ! | CGAATTTACCGGATTTTGGA+GGG | + | chr5_1:40814670-40814689 | Msa0730900:CDS | 40.0% |
| TCGGAGAAGGTTTAAAGATG+TGG | + | chr5_1:40814707-40814726 | Msa0730900:CDS | 40.0% | |
| ATGTGGTTACGCTTTCTGAT+CGG | + | chr5_1:40814724-40814743 | Msa0730900:CDS | 40.0% | |
| TACGCTTTCTGATCGGTTAT+CGG | + | chr5_1:40814731-40814750 | Msa0730900:CDS | 40.0% | |
| CTCTCCACAATACTCTTATC+CGG | - | chr5_1:40814789-40814808 | None:intergenic | 40.0% | |
| !! | TAAGAGTATTGTGGAGAGTC+AGG | + | chr5_1:40814791-40814810 | Msa0730900:CDS | 40.0% |
| !! | AGAGTGTTTTTGCAGGTTCA+AGG | + | chr5_1:40814915-40814934 | Msa0730900:CDS | 40.0% |
| !! | GAGTGTTTTTGCAGGTTCAA+GGG | + | chr5_1:40814916-40814935 | Msa0730900:CDS | 40.0% |
| TAAGGAGTTGAAGCAGTCTA+TGG | + | chr5_1:40815088-40815107 | Msa0730900:CDS | 40.0% | |
| TTATCTTCCTCGACAACAAG+CGG | - | chr5_1:40815137-40815156 | None:intergenic | 40.0% | |
| GTGACAAGCTATCAAACACA+TGG | - | chr5_1:40815520-40815539 | None:intergenic | 40.0% | |
| ! | TAACGGGCAATCCACTAAAT+AGG | + | chr5_1:40815951-40815970 | Msa0730900:intron | 40.0% |
| TATTTGGGGGTGACAAATCA+AGG | + | chr5_1:40816162-40816181 | Msa0730900:CDS | 40.0% | |
| ! | ATGACCAATCATGGGAGTAT+AGG | - | chr5_1:40816447-40816466 | None:intergenic | 40.0% |
| !! | AGTCTTATTGTTTGTGGGCT+TGG | + | chr5_1:40816671-40816690 | Msa0730900:intron | 40.0% |
| GTCAGGGAAGAAAAGAGAAA+AGG | - | chr5_1:40816823-40816842 | None:intergenic | 40.0% | |
| AAAAAAGAGAAAGGAGACCC+TGG | - | chr5_1:40816879-40816898 | None:intergenic | 40.0% | |
| AAGTTTGGGAATCAGTTCAG+AGG | + | chr5_1:40817004-40817023 | Msa0730900:intron | 40.0% | |
| TCAACCTTTCACTTCAAAGG+TGG | - | chr5_1:40817036-40817055 | None:intergenic | 40.0% | |
| !! | TTGTTTGAAAACTCGGTGTC+CGG | + | chr5_1:40817134-40817153 | Msa0730900:intron | 40.0% |
| ATTGGACTCCTCAGATTAGT+CGG | - | chr5_1:40817168-40817187 | None:intergenic | 40.0% | |
| TGGATTTAGCCCACTGAAAT+TGG | + | chr5_1:40817233-40817252 | Msa0730900:intron | 40.0% | |
| ! | TTTATAGGGTCCAGACCTTT+TGG | + | chr5_1:40817557-40817576 | Msa0730900:intron | 40.0% |
| AACTAGAGCAAATCCCAAGT+TGG | - | chr5_1:40817748-40817767 | None:intergenic | 40.0% | |
| CATGTCACGAGTAGATGAAA+TGG | - | chr5_1:40818060-40818079 | None:intergenic | 40.0% | |
| AGATAGAACCCAAAGGTCTT+TGG | + | chr5_1:40818088-40818107 | Msa0730900:intron | 40.0% | |
| ! | CTTTCTAGCCAAAGACCTTT+GGG | - | chr5_1:40818099-40818118 | None:intergenic | 40.0% |
| TGTTATCTGCTCATGTTTGC+TGG | + | chr5_1:40818124-40818143 | Msa0730900:intron | 40.0% | |
| ! | GTTATAGCGTTGAGACGTTT+AGG | + | chr5_1:40818274-40818293 | Msa0730900:intron | 40.0% |
| GTTGAGACGTTTAGGTATAG+AGG | + | chr5_1:40818282-40818301 | Msa0730900:intron | 40.0% | |
| CAAGAGAATCAGGAAAAGAG+GGG | - | chr5_1:40818590-40818609 | None:intergenic | 40.0% | |
| GCAAGAGAATCAGGAAAAGA+GGG | - | chr5_1:40818591-40818610 | None:intergenic | 40.0% | |
| TGCAAGAGAATCAGGAAAAG+AGG | - | chr5_1:40818592-40818611 | None:intergenic | 40.0% | |
| TGCACTTCTTGTCTTCTGTT+CGG | + | chr5_1:40818870-40818889 | Msa0730900:intron | 40.0% | |
| !! | GGTCAGGAACCTACTTTTAA+TGG | + | chr5_1:40818891-40818910 | Msa0730900:intron | 40.0% |
| ! | GTCTTTCATGCATTCTGGTT+TGG | + | chr5_1:40818972-40818991 | Msa0730900:intron | 40.0% |
| AAACATCTACCAGAAATGCC+AGG | - | chr5_1:40819047-40819066 | None:intergenic | 40.0% | |
| !! | TGGCATTTCTGGTAGATGTT+TGG | + | chr5_1:40819046-40819065 | Msa0730900:intron | 40.0% |
| CAGAGGAAATAGACAAGAAG+GGG | - | chr5_1:40819124-40819143 | None:intergenic | 40.0% | |
| ! | AATGATGATGATGCCAATGC+AGG | + | chr5_1:40819159-40819178 | Msa0730900:intron | 40.0% |
| TGCCAATGCAGGAAAACAAT+AGG | + | chr5_1:40819170-40819189 | Msa0730900:intron | 40.0% | |
| ! | CTCCTATTGTTTTCCTGCAT+TGG | - | chr5_1:40819175-40819194 | None:intergenic | 40.0% |
| TTGAAAGGCTTGATAGAGAG+AGG | + | chr5_1:40819200-40819219 | Msa0730900:CDS | 40.0% | |
| TGACTCTTGCATCTTTCACA+AGG | + | chr5_1:40819736-40819755 | Msa0730900:three_prime_UTR | 40.0% | |
| AGAACATGCAAGGACCAGAT+GGG | - | chr5_1:40813963-40813982 | None:intergenic | 45.0% | |
| AAGAACATGCAAGGACCAGA+TGG | - | chr5_1:40813964-40813983 | None:intergenic | 45.0% | |
| GTTGGGGTTTATTTGTGTGG+TGG | - | chr5_1:40814047-40814066 | None:intergenic | 45.0% | |
| AGGGTGAAAATGTTCCTCTG+TGG | - | chr5_1:40814193-40814212 | None:intergenic | 45.0% | |
| ATTGTGAGAATCAGAGAGCG+TGG | - | chr5_1:40814319-40814338 | None:intergenic | 45.0% | |
| AAAAGTGGATCGGAATCCAC+CGG | - | chr5_1:40814381-40814400 | None:intergenic | 45.0% | |
| !!! | TAGGGTTTTGAAATTCGCGG+TGG | - | chr5_1:40814419-40814438 | None:intergenic | 45.0% |
| CGTCTGCGTTAGGTGAATTA+GGG | - | chr5_1:40814437-40814456 | None:intergenic | 45.0% | |
| GTGAAAATTGCGTCTGCGTT+AGG | - | chr5_1:40814447-40814466 | None:intergenic | 45.0% | |
| GACGGTGAATCATCTTCCAA+TGG | + | chr5_1:40814474-40814493 | Msa0730900:CDS | 45.0% | |
| TACGGTTTCGAATCCGGTTA+AGG | + | chr5_1:40814578-40814597 | Msa0730900:CDS | 45.0% | |
| AACTCGTTCCCTCCAAAATC+CGG | - | chr5_1:40814681-40814700 | None:intergenic | 45.0% | |
| !! | GATTTTGGAGGGAACGAGTT+CGG | + | chr5_1:40814681-40814700 | Msa0730900:CDS | 45.0% |
| ACAATACTCTTATCCGGCCT+CGG | - | chr5_1:40814783-40814802 | None:intergenic | 45.0% | |
| TCATCACTCTTCCGAATCAC+CGG | - | chr5_1:40814891-40814910 | None:intergenic | 45.0% | |
| ! | GAGTGTTATTGCTCCTAGTG+AGG | + | chr5_1:40815022-40815041 | Msa0730900:CDS | 45.0% |
| AGCAGTCTATGGCGAATGAT+TGG | + | chr5_1:40815099-40815118 | Msa0730900:CDS | 45.0% | |
| GCAGTCTATGGCGAATGATT+GGG | + | chr5_1:40815100-40815119 | Msa0730900:CDS | 45.0% | |
| CAGTCTATGGCGAATGATTG+GGG | + | chr5_1:40815101-40815120 | Msa0730900:CDS | 45.0% | |
| !! | GCTTGTTGTCGAGGAAGATA+AGG | + | chr5_1:40815136-40815155 | Msa0730900:CDS | 45.0% |
| AATCAATGGTGCTTCTCAGC+AGG | + | chr5_1:40815202-40815221 | Msa0730900:CDS | 45.0% | |
| TTAGCACCTGCGAGATTGTT+TGG | + | chr5_1:40815327-40815346 | Msa0730900:intron | 45.0% | |
| TAGCACCTGCGAGATTGTTT+GGG | + | chr5_1:40815328-40815347 | Msa0730900:intron | 45.0% | |
| ! | ATCGCGAGACAATTTTGTGC+AGG | + | chr5_1:40815602-40815621 | Msa0730900:intron | 45.0% |
| CAAGATATGGGAGAGACGAT+GGG | + | chr5_1:40815648-40815667 | Msa0730900:CDS | 45.0% | |
| GAGAGACGATGGGTGAATTA+GGG | + | chr5_1:40815658-40815677 | Msa0730900:CDS | 45.0% | |
| ! | AAGCTGTTTCGGAATCTCAG+AGG | + | chr5_1:40815718-40815737 | Msa0730900:CDS | 45.0% |
| ! | AGCTGTTTCGGAATCTCAGA+GGG | + | chr5_1:40815719-40815738 | Msa0730900:CDS | 45.0% |
| GTACGAGCTACTGACATGAA+AGG | + | chr5_1:40815741-40815760 | Msa0730900:CDS | 45.0% | |
| ! | TTCTCAGACCGTGAAGCATT+TGG | + | chr5_1:40815812-40815831 | Msa0730900:CDS | 45.0% |
| ATCAAGGACTCGGAAGTTAG+AGG | + | chr5_1:40816178-40816197 | Msa0730900:CDS | 45.0% | |
| CAGAGAATATGAGCGGATCA+AGG | + | chr5_1:40816250-40816269 | Msa0730900:CDS | 45.0% | |
| ATATGAGCGGATCAAGGTAG+AGG | + | chr5_1:40816256-40816275 | Msa0730900:intron | 45.0% | |
| GTGTCCTATACTCCCATGAT+TGG | + | chr5_1:40816440-40816459 | Msa0730900:intron | 45.0% | |
| !! | ATGGCCACCTTTGAAGTGAA+AGG | + | chr5_1:40817029-40817048 | Msa0730900:intron | 45.0% |
| TGGCCTAAAGGTCTTGGTTT+GGG | - | chr5_1:40817308-40817327 | None:intergenic | 45.0% | |
| TTGGCCTAAAGGTCTTGGTT+TGG | - | chr5_1:40817309-40817328 | None:intergenic | 45.0% | |
| ACCTTTAGGCCAACCCTAAT+GGG | + | chr5_1:40817316-40817335 | Msa0730900:intron | 45.0% | |
| !!! | TCCAGACCTTTTGGTGTTGA+GGG | + | chr5_1:40817566-40817585 | Msa0730900:intron | 45.0% |
| ! | ACGTTGCTACTTGAAGACTG+TGG | + | chr5_1:40817889-40817908 | Msa0730900:intron | 45.0% |
| ! | TACTTGAAGACTGTGGACTG+TGG | + | chr5_1:40817896-40817915 | Msa0730900:intron | 45.0% |
| AAGGACCTTACTCAGTGTTC+TGG | + | chr5_1:40817981-40818000 | Msa0730900:intron | 45.0% | |
| TCATCTACTCGTGACATGTG+TGG | + | chr5_1:40818062-40818081 | Msa0730900:intron | 45.0% | |
| GTGGATGAGATAGAACCCAA+AGG | + | chr5_1:40818081-40818100 | Msa0730900:intron | 45.0% | |
| ! | CCTTTCTAGCCAAAGACCTT+TGG | - | chr5_1:40818100-40818119 | None:intergenic | 45.0% |
| CCAAAGGTCTTTGGCTAGAA+AGG | + | chr5_1:40818097-40818116 | Msa0730900:intron | 45.0% | |
| ACAACTAAAGCTTACAGGGG+AGG | + | chr5_1:40818159-40818178 | Msa0730900:intron | 45.0% | |
| AGACGTTTAGGTATAGAGGC+AGG | + | chr5_1:40818286-40818305 | Msa0730900:intron | 45.0% | |
| TTCTTGTCTTCTGTTCGGTC+AGG | + | chr5_1:40818875-40818894 | Msa0730900:intron | 45.0% | |
| ! | GATGTGTTTGGCTGGTTCAT+AGG | + | chr5_1:40819630-40819649 | Msa0730900:three_prime_UTR | 45.0% |
| ! | TTGCCACTTCACTTCCCATC+TGG | + | chr5_1:40813946-40813965 | Msa0730900:five_prime_UTR | 50.0% |
| ! | CGCAGGGGTGTAATGGTTAT+TGG | - | chr5_1:40814010-40814029 | None:intergenic | 50.0% |
| GGGGTTTATTTGTGTGGTGG+TGG | - | chr5_1:40814044-40814063 | None:intergenic | 50.0% | |
| CGGCGGAGATAAAAGTGGAT+CGG | - | chr5_1:40814391-40814410 | None:intergenic | 50.0% | |
| GCGTCTGCGTTAGGTGAATT+AGG | - | chr5_1:40814438-40814457 | None:intergenic | 50.0% | |
| GGAAGATGATTCACCGTCGA+AGG | - | chr5_1:40814472-40814491 | None:intergenic | 50.0% | |
| GCTTTCTGATCGGTTATCGG+AGG | + | chr5_1:40814734-40814753 | Msa0730900:CDS | 50.0% | |
| !!! | GTTTTTTATACCGCCGAGGC+CGG | + | chr5_1:40814767-40814786 | Msa0730900:CDS | 50.0% |
| !! | GAGGCCGGATAAGAGTATTG+TGG | + | chr5_1:40814782-40814801 | Msa0730900:CDS | 50.0% |
| !! | AGCAGGAGTTTGTTGAGCAG+AGG | + | chr5_1:40814823-40814842 | Msa0730900:CDS | 50.0% |
| !! | AGGAGTTTGTTGAGCAGAGG+AGG | + | chr5_1:40814826-40814845 | Msa0730900:CDS | 50.0% |
| !! | GGAGTTTGTTGAGCAGAGGA+GGG | + | chr5_1:40814827-40814846 | Msa0730900:CDS | 50.0% |
| AAGCTGCCGAAGCAGTTGAT+GGG | + | chr5_1:40814996-40815015 | Msa0730900:CDS | 50.0% | |
| TTGTGCAACCAGCGAAAGGT+GGG | + | chr5_1:40815045-40815064 | Msa0730900:CDS | 50.0% | |
| !! | AAGGTGGGAGGGATTTGTTG+AGG | + | chr5_1:40815060-40815079 | Msa0730900:CDS | 50.0% |
| TCTATGGCGAATGATTGGGG+TGG | + | chr5_1:40815104-40815123 | Msa0730900:CDS | 50.0% | |
| !! | TTCTAAGCCGCTTGTTGTCG+AGG | + | chr5_1:40815127-40815146 | Msa0730900:CDS | 50.0% |
| ACTCTCCCAAACAATCTCGC+AGG | - | chr5_1:40815336-40815355 | None:intergenic | 50.0% | |
| GCAAGATATGGGAGAGACGA+TGG | + | chr5_1:40815647-40815666 | Msa0730900:CDS | 50.0% | |
| GGAGAGACGATGGGTGAATT+AGG | + | chr5_1:40815657-40815676 | Msa0730900:CDS | 50.0% | |
| GACGATGGGTGAATTAGGGT+TGG | + | chr5_1:40815662-40815681 | Msa0730900:CDS | 50.0% | |
| GGGGTGACAAATCAAGGACT+CGG | + | chr5_1:40816168-40816187 | Msa0730900:CDS | 50.0% | |
| TCGGAAGTTAGAGGAGCTAC+AGG | + | chr5_1:40816187-40816206 | Msa0730900:CDS | 50.0% | |
| GGCATCTTCAGTGGCTCTTA+TGG | - | chr5_1:40816216-40816235 | None:intergenic | 50.0% | |
| GGGAATCAGTTCAGAGGTCA+TGG | + | chr5_1:40817010-40817029 | Msa0730900:intron | 50.0% | |
| TCATCTGCTTGGGATGTGTG+TGG | + | chr5_1:40817073-40817092 | Msa0730900:intron | 50.0% | |
| ! | CCTCAGATTAGTCGGTCCTT+GGG | - | chr5_1:40817160-40817179 | None:intergenic | 50.0% |
| ! | TCCTCAGATTAGTCGGTCCT+TGG | - | chr5_1:40817161-40817180 | None:intergenic | 50.0% |
| TTAAATGGGACCTCCGCAAG+TGG | - | chr5_1:40817199-40817218 | None:intergenic | 50.0% | |
| CTTGGAGTGTGCTCATCTCA+AGG | - | chr5_1:40817283-40817302 | None:intergenic | 50.0% | |
| CTTGAGATGAGCACACTCCA+AGG | + | chr5_1:40817281-40817300 | Msa0730900:intron | 50.0% | |
| !! | AAGGTCTTGGTTTGGGACCT+TGG | - | chr5_1:40817301-40817320 | None:intergenic | 50.0% |
| GGTCCCAAACCAAGACCTTT+AGG | + | chr5_1:40817302-40817321 | Msa0730900:intron | 50.0% | |
| !! | TAGGGTTGGCCTAAAGGTCT+TGG | - | chr5_1:40817314-40817333 | None:intergenic | 50.0% |
| GACCTTTAGGCCAACCCTAA+TGG | + | chr5_1:40817315-40817334 | Msa0730900:intron | 50.0% | |
| !! | ACCCATTAGGGTTGGCCTAA+AGG | - | chr5_1:40817320-40817339 | None:intergenic | 50.0% |
| CCATAGGAACCCATTAGGGT+TGG | - | chr5_1:40817328-40817347 | None:intergenic | 50.0% | |
| !! | CCAACCCTAATGGGTTCCTA+TGG | + | chr5_1:40817325-40817344 | Msa0730900:intron | 50.0% |
| !!! | GTCCAGACCTTTTGGTGTTG+AGG | + | chr5_1:40817565-40817584 | Msa0730900:intron | 50.0% |
| TCCCTCAACACCAAAAGGTC+TGG | - | chr5_1:40817570-40817589 | None:intergenic | 50.0% | |
| !!! | AGACCTTTTGGTGTTGAGGG+AGG | + | chr5_1:40817569-40817588 | Msa0730900:intron | 50.0% |
| TGTCCTCCCTCAACACCAAA+AGG | - | chr5_1:40817575-40817594 | None:intergenic | 50.0% | |
| !! | TTTCCCTCCCTTTTTGGCCA+AGG | + | chr5_1:40817646-40817665 | Msa0730900:intron | 50.0% |
| !! | TTCCCTCCCTTTTTGGCCAA+GGG | + | chr5_1:40817647-40817666 | Msa0730900:intron | 50.0% |
| AGAAGGCCCTTGGCCAAAAA+GGG | - | chr5_1:40817656-40817675 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+AGG | - | chr5_1:40817673-40817692 | None:intergenic | 50.0% | |
| !! | ATGCCTCTGCCTAGCTTGTT+TGG | + | chr5_1:40817786-40817805 | Msa0730900:intron | 50.0% |
| GAACAGCGTCCAAACAAGCT+AGG | - | chr5_1:40817798-40817817 | None:intergenic | 50.0% | |
| GGTCGTGCAAAGATGCAGTA+AGG | - | chr5_1:40817846-40817865 | None:intergenic | 50.0% | |
| GCATCTTTGCACGACCTGTT+TGG | + | chr5_1:40817850-40817869 | Msa0730900:intron | 50.0% | |
| AGGTCTTTGGCTAGAAAGGC+TGG | + | chr5_1:40818101-40818120 | Msa0730900:intron | 50.0% | |
| GATGCAGCAGACAGAACACT+AGG | - | chr5_1:40818797-40818816 | None:intergenic | 50.0% | |
| AAGGCTTGATAGAGAGAGGC+AGG | + | chr5_1:40819204-40819223 | Msa0730900:CDS | 50.0% | |
| GTGTTCATCGGTGTGTAAGC+AGG | + | chr5_1:40819314-40819333 | Msa0730900:intron | 50.0% | |
| GGACCAGATGGGAAGTGAAG+TGG | - | chr5_1:40813952-40813971 | None:intergenic | 55.0% | |
| ! | TAACGTGCGCAGGGGTGTAA+TGG | - | chr5_1:40814017-40814036 | None:intergenic | 55.0% |
| ATCGCCGAGCTTCGTTTCAC+CGG | + | chr5_1:40814359-40814378 | Msa0730900:CDS | 55.0% | |
| TCCACCGGTGAAACGAAGCT+CGG | - | chr5_1:40814366-40814385 | None:intergenic | 55.0% | |
| TGCTGCGGCGGAGATAAAAG+TGG | - | chr5_1:40814396-40814415 | None:intergenic | 55.0% | |
| ! | TGAAATTCGCGGTGGTGCTG+CGG | - | chr5_1:40814411-40814430 | None:intergenic | 55.0% |
| CCATCGGAGAAGCTTCGTGT+CGG | - | chr5_1:40814510-40814529 | None:intergenic | 55.0% | |
| ACACGAAGCTTCTCCGATGG+AGG | + | chr5_1:40814510-40814529 | Msa0730900:CDS | 55.0% | |
| !! | GAGGGAACGAGTTCGGTGTT+CGG | + | chr5_1:40814688-40814707 | Msa0730900:CDS | 55.0% |
| !! | ACGAGTTCGGTGTTCGGAGA+AGG | + | chr5_1:40814694-40814713 | Msa0730900:CDS | 55.0% |
| !!! | GCGGGTTTTTTATACCGCCG+AGG | + | chr5_1:40814763-40814782 | Msa0730900:CDS | 55.0% |
| ATACTCTTATCCGGCCTCGG+CGG | - | chr5_1:40814780-40814799 | None:intergenic | 55.0% | |
| GAGTCAGGTGATGCAGAAGC+AGG | + | chr5_1:40814806-40814825 | Msa0730900:CDS | 55.0% | |
| ! | GTTTGTTGAGCAGAGGAGGG+TGG | + | chr5_1:40814830-40814849 | Msa0730900:CDS | 55.0% |
| ! | GAGGAGATTGGCGGATCATC+CGG | + | chr5_1:40814869-40814888 | Msa0730900:CDS | 55.0% |
| ! | TGGCGGATCATCCGGTGATT+CGG | + | chr5_1:40814877-40814896 | Msa0730900:CDS | 55.0% |
| GGTTCAAGGGAAGCTTCCGT+TGG | + | chr5_1:40814929-40814948 | Msa0730900:CDS | 55.0% | |
| TCAAGGGAAGCTTCCGTTGG+TGG | + | chr5_1:40814932-40814951 | Msa0730900:CDS | 55.0% | |
| CAAGGGAAGCTTCCGTTGGT+GGG | + | chr5_1:40814933-40814952 | Msa0730900:CDS | 55.0% | |
| ACATCCGTCGAACCCACCAA+CGG | - | chr5_1:40814948-40814967 | None:intergenic | 55.0% | |
| TTCGACGGATGTGGCTTCGA+GGG | + | chr5_1:40814956-40814975 | Msa0730900:CDS | 55.0% | |
| ! | GGATGTGGCTTCGAGGGTTT+TGG | + | chr5_1:40814962-40814981 | Msa0730900:CDS | 55.0% |
| !!! | GTGGCTTCGAGGGTTTTGGA+TGG | + | chr5_1:40814966-40814985 | Msa0730900:CDS | 55.0% |
| !!! | TTCGAGGGTTTTGGATGGCG+CGG | + | chr5_1:40814971-40814990 | Msa0730900:CDS | 55.0% |
| GAAGCTGCCGAAGCAGTTGA+TGG | + | chr5_1:40814995-40815014 | Msa0730900:CDS | 55.0% | |
| ! | AGCTGCCGAAGCAGTTGATG+GGG | + | chr5_1:40814997-40815016 | Msa0730900:CDS | 55.0% |
| CTCTCCCCCATCAACTGCTT+CGG | - | chr5_1:40815005-40815024 | None:intergenic | 55.0% | |
| GCTGGTTGCACAACCTCACT+AGG | - | chr5_1:40815038-40815057 | None:intergenic | 55.0% | |
| GAGGTTGTGCAACCAGCGAA+AGG | + | chr5_1:40815041-40815060 | Msa0730900:CDS | 55.0% | |
| GTTGTGCAACCAGCGAAAGG+TGG | + | chr5_1:40815044-40815063 | Msa0730900:CDS | 55.0% | |
| AAATCCCTCCCACCTTTCGC+TGG | - | chr5_1:40815056-40815075 | None:intergenic | 55.0% | |
| ! | AGATTAGTCGGTCCTTGGGC+CGG | - | chr5_1:40817156-40817175 | None:intergenic | 55.0% |
| CCCAAGGACCGACTAATCTG+AGG | + | chr5_1:40817157-40817176 | Msa0730900:intron | 55.0% | |
| CCAATTCCACCGTCCACTTG+CGG | + | chr5_1:40817183-40817202 | Msa0730900:intron | 55.0% | |
| AGCCCACTGAAATTGGCACC+AGG | + | chr5_1:40817240-40817259 | Msa0730900:intron | 55.0% | |
| GCCCACTGAAATTGGCACCA+GGG | + | chr5_1:40817241-40817260 | Msa0730900:intron | 55.0% | |
| ! | CCCCTGGTGCCAATTTCAGT+GGG | - | chr5_1:40817245-40817264 | None:intergenic | 55.0% |
| CCCACTGAAATTGGCACCAG+GGG | + | chr5_1:40817242-40817261 | Msa0730900:intron | 55.0% | |
| CCACTGAAATTGGCACCAGG+GGG | + | chr5_1:40817243-40817262 | Msa0730900:intron | 55.0% | |
| CACTGAAATTGGCACCAGGG+GGG | + | chr5_1:40817244-40817263 | Msa0730900:intron | 55.0% | |
| GAGAAGGCCCTTGGCCAAAA+AGG | - | chr5_1:40817657-40817676 | None:intergenic | 55.0% | |
| AGAGAGAGAGAGAAGGCCCT+TGG | - | chr5_1:40817666-40817685 | None:intergenic | 55.0% | |
| CGTCCAAACAAGCTAGGCAG+AGG | - | chr5_1:40817792-40817811 | None:intergenic | 55.0% | |
| GTGGAGACTAACGTGCGCAG+GGG | - | chr5_1:40814025-40814044 | None:intergenic | 60.0% | |
| GGTGGAGACTAACGTGCGCA+GGG | - | chr5_1:40814026-40814045 | None:intergenic | 60.0% | |
| TGGTGGAGACTAACGTGCGC+AGG | - | chr5_1:40814027-40814046 | None:intergenic | 60.0% | |
| AGAGCGTGGACATCACGCTC+CGG | - | chr5_1:40814305-40814324 | None:intergenic | 60.0% | |
| AGCTCGGCGATGAGAGAGGA+TGG | - | chr5_1:40814350-40814369 | None:intergenic | 60.0% | |
| ACGAAGCTCGGCGATGAGAG+AGG | - | chr5_1:40814354-40814373 | None:intergenic | 60.0% | |
| CCGACACGAAGCTTCTCCGA+TGG | + | chr5_1:40814507-40814526 | Msa0730900:CDS | 60.0% | |
| ! | CGGTTATCGGAGGCGTATCG+CGG | + | chr5_1:40814744-40814763 | Msa0730900:CDS | 60.0% |
| ! | GGTTATCGGAGGCGTATCGC+GGG | + | chr5_1:40814745-40814764 | Msa0730900:CDS | 60.0% |
| TGAGCAGAGGAGGGTGGCAT+TGG | + | chr5_1:40814836-40814855 | Msa0730900:CDS | 60.0% | |
| !! | GCTTCCGTTGGTGGGTTCGA+CGG | + | chr5_1:40814941-40814960 | Msa0730900:CDS | 60.0% |
| !! | GTTGGTGGGTTCGACGGATG+TGG | + | chr5_1:40814947-40814966 | Msa0730900:CDS | 60.0% |
| GTTCGACGGATGTGGCTTCG+AGG | + | chr5_1:40814955-40814974 | Msa0730900:CDS | 60.0% | |
| !! | GCTGCCGAAGCAGTTGATGG+GGG | + | chr5_1:40814998-40815017 | Msa0730900:CDS | 60.0% |
| TGCAACCAGCGAAAGGTGGG+AGG | + | chr5_1:40815048-40815067 | Msa0730900:CDS | 60.0% | |
| GCAACCAGCGAAAGGTGGGA+GGG | + | chr5_1:40815049-40815068 | Msa0730900:CDS | 60.0% | |
| CTCGCAGGTGCTAATGCCAG+TGG | - | chr5_1:40815321-40815340 | None:intergenic | 60.0% | |
| !! | AAAACTCGGTGTCCGGCCCA+AGG | + | chr5_1:40817141-40817160 | Msa0730900:intron | 60.0% |
| CCGCAAGTGGACGGTGGAAT+TGG | - | chr5_1:40817186-40817205 | None:intergenic | 60.0% | |
| ATTCCACCGTCCACTTGCGG+AGG | + | chr5_1:40817186-40817205 | Msa0730900:intron | 60.0% | |
| ATGGGACCTCCGCAAGTGGA+CGG | - | chr5_1:40817195-40817214 | None:intergenic | 60.0% | |
| ! | CCCCCTGGTGCCAATTTCAG+TGG | - | chr5_1:40817246-40817265 | None:intergenic | 60.0% |
| GGCCCTTGGCCAAAAAGGGA+GGG | - | chr5_1:40817652-40817671 | None:intergenic | 60.0% | |
| AGGCCCTTGGCCAAAAAGGG+AGG | - | chr5_1:40817653-40817672 | None:intergenic | 60.0% | |
| GCCGAGCTTCGTTTCACCGG+TGG | + | chr5_1:40814362-40814381 | Msa0730900:CDS | 65.0% | |
| !! | AATTCGCGGTGGTGCTGCGG+CGG | - | chr5_1:40814408-40814427 | None:intergenic | 65.0% |
| GTCTCGCGTTTGATCCCCCC+TGG | - | chr5_1:40817261-40817280 | None:intergenic | 65.0% | |
| GGACCTCCGCAAGTGGACGG+TGG | - | chr5_1:40817192-40817211 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 40813929 | 40819799 | 40813929 | ID=Msa0730900;Name=Msa0730900 |
| chr5_1 | mRNA | 40813929 | 40819799 | 40813929 | ID=Msa0730900-mRNA-1;Parent=Msa0730900;Name=Msa0730900-mRNA-1;_AED=0.15;_eAED=0.15;_QI=236|1|1|1|1|1|5|255|565 |
| chr5_1 | exon | 40813929 | 40815223 | 40813929 | ID=Msa0730900-mRNA-1:exon:11907;Parent=Msa0730900-mRNA-1 |
| chr5_1 | exon | 40815624 | 40815833 | 40815624 | ID=Msa0730900-mRNA-1:exon:11908;Parent=Msa0730900-mRNA-1 |
| chr5_1 | exon | 40816011 | 40816271 | 40816011 | ID=Msa0730900-mRNA-1:exon:11909;Parent=Msa0730900-mRNA-1 |
| chr5_1 | exon | 40819181 | 40819267 | 40819181 | ID=Msa0730900-mRNA-1:exon:11910;Parent=Msa0730900-mRNA-1 |
| chr5_1 | exon | 40819464 | 40819799 | 40819464 | ID=Msa0730900-mRNA-1:exon:11911;Parent=Msa0730900-mRNA-1 |
| chr5_1 | five_prime_UTR | 40813929 | 40814164 | 40813929 | ID=Msa0730900-mRNA-1:five_prime_utr;Parent=Msa0730900-mRNA-1 |
| chr5_1 | CDS | 40814165 | 40815223 | 40814165 | ID=Msa0730900-mRNA-1:cds;Parent=Msa0730900-mRNA-1 |
| chr5_1 | CDS | 40815624 | 40815833 | 40815624 | ID=Msa0730900-mRNA-1:cds;Parent=Msa0730900-mRNA-1 |
| chr5_1 | CDS | 40816011 | 40816271 | 40816011 | ID=Msa0730900-mRNA-1:cds;Parent=Msa0730900-mRNA-1 |
| chr5_1 | CDS | 40819181 | 40819267 | 40819181 | ID=Msa0730900-mRNA-1:cds;Parent=Msa0730900-mRNA-1 |
| chr5_1 | CDS | 40819464 | 40819544 | 40819464 | ID=Msa0730900-mRNA-1:cds;Parent=Msa0730900-mRNA-1 |
| chr5_1 | three_prime_UTR | 40819545 | 40819799 | 40819545 | ID=Msa0730900-mRNA-1:three_prime_utr;Parent=Msa0730900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
