Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606740 | PNY15753.1 | 96.203 | 158 | 6 | 0 | 1 | 158 | 1 | 158 | 4.10e-107 | 312 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606740 | sp|Q9C6C3|AGD2_ARATH | 76.923 | 156 | 36 | 0 | 3 | 158 | 2 | 157 | 7.42e-79 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606740 | A0A2K3PKE0 | 96.203 | 158 | 6 | 0 | 1 | 158 | 1 | 158 | 1.96e-107 | 312 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003220 | Msa0606740 | 0.818841 | 1.587957e-52 | -8.615850e-47 |
| Msa0041690 | Msa0606740 | 0.808540 | 2.945903e-50 | -8.615850e-47 |
| Msa0064920 | Msa0606740 | 0.824220 | 9.081020e-54 | -8.615850e-47 |
| Msa0065550 | Msa0606740 | 0.802572 | 5.263776e-49 | -8.615850e-47 |
| Msa0069600 | Msa0606740 | 0.818880 | 1.555844e-52 | -8.615850e-47 |
| Msa0084340 | Msa0606740 | 0.801810 | 7.553040e-49 | -8.615850e-47 |
| Msa0090660 | Msa0606740 | 0.817361 | 3.431270e-52 | -8.615850e-47 |
| Msa0091780 | Msa0606740 | 0.816968 | 4.206775e-52 | -8.615850e-47 |
| Msa0092440 | Msa0606740 | 0.811269 | 7.619863e-51 | -8.615850e-47 |
| Msa0116270 | Msa0606740 | 0.805307 | 1.421830e-49 | -8.615850e-47 |
| Msa0117910 | Msa0606740 | 0.808471 | 3.046833e-50 | -8.615850e-47 |
| Msa0606740 | Msa0646400 | 0.803591 | 3.239802e-49 | -8.615850e-47 |
| Msa0606740 | Msa0657750 | 0.812753 | 3.618495e-51 | -8.615850e-47 |
| Msa0606740 | Msa0687450 | 0.840774 | 7.101497e-58 | -8.615850e-47 |
| Msa0606740 | Msa0689420 | 0.805119 | 1.556539e-49 | -8.615850e-47 |
| Msa0606740 | Msa0689760 | 0.851456 | 8.774210e-61 | -8.615850e-47 |
| Msa0606740 | Msa0716860 | 0.851419 | 8.985463e-61 | -8.615850e-47 |
| Msa0606740 | Msa0730900 | 0.806054 | 9.908464e-50 | -8.615850e-47 |
| Msa0606740 | Msa0749400 | 0.855579 | 5.739170e-62 | -8.615850e-47 |
| Msa0606740 | Msa0757800 | 0.817467 | 3.248978e-52 | -8.615850e-47 |
| Msa0606740 | Msa0780280 | 0.803818 | 2.907049e-49 | -8.615850e-47 |
| Msa0606740 | Msa0828920 | 0.830056 | 3.641255e-55 | -8.615850e-47 |
| Msa0606740 | Msa0861830 | 0.813091 | 3.049790e-51 | -8.615850e-47 |
| Msa0606740 | Msa0898660 | 0.803668 | 3.123023e-49 | -8.615850e-47 |
| Msa0606740 | Msa0969330 | 0.824771 | 6.738554e-54 | -8.615850e-47 |
| Msa0606740 | Msa0996020 | 0.826823 | 2.195603e-54 | -8.615850e-47 |
| Msa0606740 | Msa0998590 | 0.810877 | 9.265202e-51 | -8.615850e-47 |
| Msa0606740 | Msa1010070 | 0.820192 | 7.808541e-53 | -8.615850e-47 |
| Msa0606740 | Msa1010460 | 0.800617 | 1.325042e-48 | -8.615850e-47 |
| Msa0606740 | Msa1036740 | 0.820164 | 7.927076e-53 | -8.615850e-47 |
| Msa0606740 | Msa1050910 | 0.803973 | 2.699324e-49 | -8.615850e-47 |
| Msa0606740 | Msa1067140 | 0.814685 | 1.358391e-51 | -8.615850e-47 |
| Msa0606740 | Msa1072700 | 0.808915 | 2.448965e-50 | -8.615850e-47 |
| Msa0606740 | Msa1095790 | 0.825675 | 4.118098e-54 | -8.615850e-47 |
| Msa0606740 | Msa1113590 | 0.801078 | 1.066995e-48 | -8.615850e-47 |
| Msa0606740 | Msa1122780 | 0.800252 | 1.572720e-48 | -8.615850e-47 |
| Msa0606740 | Msa1127540 | 0.812131 | 4.946801e-51 | -8.615850e-47 |
| Msa0606740 | Msa1201640 | 0.802395 | 5.726745e-49 | -8.615850e-47 |
| Msa0606740 | Msa1201810 | 0.806310 | 8.751678e-50 | -8.615850e-47 |
| Msa0606740 | Msa1211340 | 0.840441 | 8.678185e-58 | -8.615850e-47 |
| Msa0606740 | Msa1254620 | 0.809053 | 2.288707e-50 | -8.615850e-47 |
| Msa0606740 | Msa1259640 | 0.839760 | 1.306930e-57 | -8.615850e-47 |
| Msa0606740 | Msa1282500 | 0.811813 | 5.803299e-51 | -8.615850e-47 |
| Msa0606740 | Msa1296300 | 0.801201 | 1.007051e-48 | -8.615850e-47 |
| Msa0606740 | Msa1299330 | 0.823437 | 1.386042e-53 | -8.615850e-47 |
| Msa0606740 | Msa1329790 | 0.834334 | 3.183200e-56 | -8.615850e-47 |
| Msa0606740 | Msa1338250 | 0.825011 | 5.913607e-54 | -8.615850e-47 |
| Msa0606740 | Msa1393800 | 0.830071 | 3.610467e-55 | -8.615850e-47 |
| Msa0606740 | Msa1418260 | 0.807836 | 4.161071e-50 | -8.615850e-47 |
| Msa0606740 | Msa1420250 | 0.853757 | 1.934685e-61 | -8.615850e-47 |
| Msa0606740 | Msa1426910 | 0.845482 | 3.952100e-59 | -8.615850e-47 |
| Msa0606740 | Msa1435260 | 0.814157 | 1.777555e-51 | -8.615850e-47 |
| Msa0606740 | Msa1438450 | 0.814481 | 1.507251e-51 | -8.615850e-47 |
| Msa0606740 | Msa1466590 | 0.853535 | 2.241770e-61 | -8.615850e-47 |
| Msa0606740 | Msa1467000 | 0.831142 | 1.974310e-55 | -8.615850e-47 |
| Msa0126230 | Msa0606740 | 0.840340 | 9.222097e-58 | -8.615850e-47 |
| Msa0133720 | Msa0606740 | 0.813672 | 2.273207e-51 | -8.615850e-47 |
| Msa0133820 | Msa0606740 | 0.819599 | 1.067202e-52 | -8.615850e-47 |
| Msa0138210 | Msa0606740 | 0.807723 | 4.396230e-50 | -8.615850e-47 |
| Msa0144360 | Msa0606740 | 0.806323 | 8.699689e-50 | -8.615850e-47 |
| Msa0177170 | Msa0606740 | 0.820520 | 6.566988e-53 | -8.615850e-47 |
| Msa0236770 | Msa0606740 | 0.812983 | 3.221268e-51 | -8.615850e-47 |
| Msa0387950 | Msa0606740 | 0.811335 | 7.369573e-51 | -8.615850e-47 |
| Msa0394690 | Msa0606740 | 0.815183 | 1.053544e-51 | -8.615850e-47 |
| Msa0395980 | Msa0606740 | 0.801368 | 9.306637e-49 | -8.615850e-47 |
| Msa0411410 | Msa0606740 | 0.813673 | 2.271854e-51 | -8.615850e-47 |
| Msa0423840 | Msa0606740 | 0.821722 | 3.470992e-53 | -8.615850e-47 |
| Msa0446900 | Msa0606740 | 0.828978 | 6.656478e-55 | -8.615850e-47 |
| Msa0450360 | Msa0606740 | 0.805367 | 1.381200e-49 | -8.615850e-47 |
| Msa0473980 | Msa0606740 | 0.800203 | 1.609341e-48 | -8.615850e-47 |
| Msa0269520 | Msa0606740 | 0.822566 | 2.211708e-53 | -8.615850e-47 |
| Msa0301810 | Msa0606740 | 0.807449 | 5.027868e-50 | -8.615850e-47 |
| Msa0305330 | Msa0606740 | 0.807159 | 5.790836e-50 | -8.615850e-47 |
| Msa0318880 | Msa0606740 | 0.805017 | 1.634921e-49 | -8.615850e-47 |
| Msa0343300 | Msa0606740 | 0.804008 | 2.654710e-49 | -8.615850e-47 |
| Msa0363810 | Msa0606740 | 0.824545 | 7.615420e-54 | -8.615850e-47 |
| Msa0510290 | Msa0606740 | 0.840896 | 6.596365e-58 | -8.615850e-47 |
| Msa0518960 | Msa0606740 | 0.823113 | 1.649757e-53 | -8.615850e-47 |
| Msa0576680 | Msa0606740 | 0.802490 | 5.472417e-49 | -8.615850e-47 |
| Msa0588120 | Msa0606740 | 0.808217 | 3.451472e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606740 | MtrunA17_Chr4g0037651 | 100.000 | 158 | 0 | 0 | 1 | 158 | 1 | 158 | 1.48e-107 | 323 |
| Msa0606740 | MtrunA17_Chr7g0221441 | 57.962 | 157 | 66 | 0 | 5 | 161 | 3 | 159 | 1.78e-64 | 211 |
| Msa0606740 | MtrunA17_Chr3g0131671 | 56.329 | 158 | 69 | 0 | 4 | 161 | 2 | 159 | 7.97e-60 | 198 |
| Msa0606740 | MtrunA17_Chr8g0385781 | 53.247 | 154 | 72 | 0 | 5 | 158 | 3 | 156 | 6.57e-56 | 187 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606740 | AT1G60860.1 | 76.923 | 156 | 36 | 0 | 3 | 158 | 2 | 157 | 7.54e-80 | 251 |
| Msa0606740 | AT1G10870.2 | 73.718 | 156 | 41 | 0 | 3 | 158 | 2 | 157 | 3.00e-74 | 237 |
| Msa0606740 | AT1G10870.1 | 73.718 | 156 | 41 | 0 | 3 | 158 | 2 | 157 | 3.29e-74 | 236 |
| Msa0606740 | AT5G13300.1 | 57.862 | 159 | 67 | 0 | 5 | 163 | 3 | 161 | 3.78e-64 | 210 |
| Msa0606740 | AT5G61980.1 | 54.140 | 157 | 72 | 0 | 5 | 161 | 3 | 159 | 3.23e-60 | 199 |
| Msa0606740 | AT1G60860.2 | 84.783 | 46 | 7 | 0 | 113 | 158 | 1 | 46 | 5.51e-18 | 80.5 |
Find 39 sgRNAs with CRISPR-Local
Find 285 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGAATAGGAACCTGTTTC+TGG | 0.192308 | 4_2:+53365851 | None:intergenic |
| AGAAACAGCTGATGAGTTAA+AGG | 0.304443 | 4_2:-53364742 | Msa0606740:CDS |
| TGATCATTTACTAATTGATA+TGG | 0.316338 | 4_2:+53361079 | None:intergenic |
| GCTGATTCATTAGAAGCATT+TGG | 0.333082 | 4_2:-53363910 | Msa0606740:CDS |
| TACACCCTTTGAATAGATTC+TGG | 0.340734 | 4_2:+53364712 | None:intergenic |
| ATCTCCTCAGGACAGCTATA+GGG | 0.341643 | 4_2:-53363960 | Msa0606740:intron |
| TTCTCCAATGTTCCAGAAAC+AGG | 0.351523 | 4_2:-53365863 | Msa0606740:intron |
| TATCTCCTCAGGACAGCTAT+AGG | 0.355481 | 4_2:-53363961 | Msa0606740:intron |
| GCTATAGGGGAAGCATATAA+TGG | 0.401537 | 4_2:-53363946 | Msa0606740:CDS |
| CCTCCAATTGATACACTAAC+AGG | 0.419592 | 4_2:+53363871 | None:intergenic |
| ATCTGTGCATTCTTATGATC+AGG | 0.455771 | 4_2:-53362110 | Msa0606740:intron |
| TGTATAGGTAGAGCATGTAT+TGG | 0.462481 | 4_2:-53362342 | Msa0606740:intron |
| GGAACCTGTTTCTGGAACAT+TGG | 0.467030 | 4_2:+53365859 | None:intergenic |
| TAAAGAGCTTCTTCGCTCAC+AGG | 0.485694 | 4_2:-53363534 | Msa0606740:intron |
| AATTCAGCAACAATATCTTC+CGG | 0.500213 | 4_2:+53361114 | None:intergenic |
| CATTTATAAACTCTGTCAAC+CGG | 0.503947 | 4_2:+53362315 | None:intergenic |
| GATCCTGTTAGTGTATCAAT+TGG | 0.513937 | 4_2:-53363874 | Msa0606740:CDS |
| TAGAGCATGTATTGGTTGAC+CGG | 0.520417 | 4_2:-53362334 | Msa0606740:CDS |
| TCATTAGAAGCATTTGGAGG+TGG | 0.523290 | 4_2:-53363904 | Msa0606740:CDS |
| TGTTGTTGTTGGGTGAAGCT+CGG | 0.529213 | 4_2:+53365951 | None:intergenic |
| ACGTAGTGCGGTGATAAACT+TGG | 0.534422 | 4_2:+53363571 | None:intergenic |
| CGGTGCCAGAATCTATTCAA+AGG | 0.549863 | 4_2:-53364717 | Msa0606740:CDS |
| TGTTGATTTGCAAGATGCCA+AGG | 0.551744 | 4_2:-53362294 | Msa0606740:intron |
| CCTGTTAGTGTATCAATTGG+AGG | 0.555903 | 4_2:-53363871 | Msa0606740:intron |
| GTGATAAACTTGGATATGAC+GGG | 0.556307 | 4_2:+53363581 | None:intergenic |
| TCTCCTCAGGACAGCTATAG+GGG | 0.557373 | 4_2:-53363959 | Msa0606740:intron |
| TATTGTTGCTGAATTAGAAG+AGG | 0.565780 | 4_2:-53361106 | Msa0606740:CDS |
| GATTCATTAGAAGCATTTGG+AGG | 0.570143 | 4_2:-53363907 | Msa0606740:CDS |
| GGTGCCAGAATCTATTCAAA+GGG | 0.589241 | 4_2:-53364716 | Msa0606740:CDS |
| GGTGATAAACTTGGATATGA+CGG | 0.598806 | 4_2:+53363580 | None:intergenic |
| TGCTTCTAATGAATCAGCAA+AGG | 0.614038 | 4_2:+53363915 | None:intergenic |
| AGTAGCTAATTCACGTAGTG+CGG | 0.628754 | 4_2:+53363559 | None:intergenic |
| AAGATCAGACACAACAGCAA+TGG | 0.634411 | 4_2:-53365911 | Msa0606740:exon |
| ATACACTAACAGGATCATCA+TGG | 0.655340 | 4_2:+53363881 | None:intergenic |
| TTCTTTGAAGAAGAATACAC+CGG | 0.667197 | 4_2:-53361133 | Msa0606740:CDS |
| CAGCTGATGAGTTAAAGGAT+CGG | 0.673704 | 4_2:-53364737 | Msa0606740:CDS |
| TATGTATGTATTGATTGACA+TGG | 0.684880 | 4_2:-53365988 | Msa0606740:five_prime_UTR |
| ATGTATGTATTGATTGACAT+GGG | 0.705606 | 4_2:-53365987 | Msa0606740:five_prime_UTR |
| GCACAGATTTGTCAAAACGA+CGG | 0.721276 | 4_2:+53362125 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTATCAAACAAAAAT+TGG | + | chr4_2:53364496-53364515 | None:intergenic | 10.0% |
| !!! | ATCATTATTTTATTCTTTTT+TGG | - | chr4_2:53364713-53364732 | Msa0606740:CDS | 10.0% |
| !! | ATTAAACTCAATTAAGAAAA+GGG | + | chr4_2:53362037-53362056 | None:intergenic | 15.0% |
| !! | TATTAAACTCAATTAAGAAA+AGG | + | chr4_2:53362038-53362057 | None:intergenic | 15.0% |
| !! | TTTATATTGATCATTTATCT+TGG | - | chr4_2:53362224-53362243 | Msa0606740:intron | 15.0% |
| !!! | GGATTTGTATTTATTTTTTT+TGG | - | chr4_2:53362245-53362264 | Msa0606740:intron | 15.0% |
| !! | AAAATAAATAAATTACTGCA+AGG | + | chr4_2:53362309-53362328 | None:intergenic | 15.0% |
| !!! | AGTAATTTATTTATTTTCCA+TGG | - | chr4_2:53362312-53362331 | Msa0606740:CDS | 15.0% |
| !! | TTACATTTAATACTCTATAT+AGG | + | chr4_2:53362439-53362458 | None:intergenic | 15.0% |
| !!! | GATTTCTATTATTGATAATT+TGG | - | chr4_2:53362584-53362603 | Msa0606740:intron | 15.0% |
| !! | ATAATACTATTAGAAAGAAA+GGG | + | chr4_2:53362713-53362732 | None:intergenic | 15.0% |
| !! | AATAATACTATTAGAAAGAA+AGG | + | chr4_2:53362714-53362733 | None:intergenic | 15.0% |
| !!! | CATAATTTGTTATTTTAATG+TGG | - | chr4_2:53362735-53362754 | Msa0606740:intron | 15.0% |
| !!! | ATTACTTTTTAAAACAATTG+TGG | - | chr4_2:53363075-53363094 | Msa0606740:intron | 15.0% |
| !!! | TTTTGTGTTAAAATTGTTAT+TGG | - | chr4_2:53363349-53363368 | Msa0606740:intron | 15.0% |
| !!! | AATTTATTTTTCCTTGTTAA+AGG | - | chr4_2:53363433-53363452 | Msa0606740:intron | 15.0% |
| !!! | CATAATTTTCTTTCTTTTTT+TGG | + | chr4_2:53364233-53364252 | None:intergenic | 15.0% |
| !! | AATTGACATATTTATTGTAT+AGG | - | chr4_2:53364739-53364758 | Msa0606740:CDS | 15.0% |
| !!! | GCAAATATAATTAGTAATTT+TGG | - | chr4_2:53365071-53365090 | Msa0606740:intron | 15.0% |
| !!! | ATAAGAATTTTTATCTCTTA+TGG | - | chr4_2:53365383-53365402 | Msa0606740:intron | 15.0% |
| !!! | TATTTTATCTCAAAATATCA+AGG | + | chr4_2:53365579-53365598 | None:intergenic | 15.0% |
| !! | AATTGAATTGAAGATAGAAT+AGG | + | chr4_2:53361261-53361280 | None:intergenic | 20.0% |
| !! | TTTCAATTTCAATCAAATCA+AGG | + | chr4_2:53361335-53361354 | None:intergenic | 20.0% |
| !! | TAAGAACAGAATTTATTCAA+CGG | + | chr4_2:53361703-53361722 | None:intergenic | 20.0% |
| !! | TTGAGTTTAATAACTCTATA+CGG | - | chr4_2:53362046-53362065 | Msa0606740:intron | 20.0% |
| !! | TTTAATACTCTATATAGGAA+AGG | + | chr4_2:53362434-53362453 | None:intergenic | 20.0% |
| !!! | ACCTTTTCATTATTCTTTTT+AGG | - | chr4_2:53362654-53362673 | Msa0606740:intron | 20.0% |
| !! | TCCTAAAAAGAATAATGAAA+AGG | + | chr4_2:53362658-53362677 | None:intergenic | 20.0% |
| !! | TAATACTATTAGAAAGAAAG+GGG | + | chr4_2:53362712-53362731 | None:intergenic | 20.0% |
| !!! | TCATGATTGTATTTCAATTT+TGG | - | chr4_2:53362931-53362950 | Msa0606740:intron | 20.0% |
| !!! | CATGATTGTATTTCAATTTT+GGG | - | chr4_2:53362932-53362951 | Msa0606740:intron | 20.0% |
| !! | AAAGTAATAGCTAATTTGAT+TGG | + | chr4_2:53363063-53363082 | None:intergenic | 20.0% |
| !!! | TATAAGTTGAGAATTTCAAA+TGG | - | chr4_2:53363290-53363309 | Msa0606740:intron | 20.0% |
| !! | TAAGCTGCAAATAAATAAAA+TGG | + | chr4_2:53363414-53363433 | None:intergenic | 20.0% |
| !! | AAAATACCATTCACTAATTA+GGG | + | chr4_2:53363480-53363499 | None:intergenic | 20.0% |
| !!! | CTTTAATTTATGTGGATTAA+AGG | + | chr4_2:53364355-53364374 | None:intergenic | 20.0% |
| !! | TTAATCCACATAAATTAAAG+TGG | - | chr4_2:53364355-53364374 | Msa0606740:intron | 20.0% |
| !!! | GTAATTTTGGTATATCAAAT+TGG | - | chr4_2:53365084-53365103 | Msa0606740:intron | 20.0% |
| !! | AAAAAAAGAGTTAACTAAAC+AGG | + | chr4_2:53365249-53365268 | None:intergenic | 20.0% |
| !! | AGTAAATAATGGTTTGAAAA+AGG | + | chr4_2:53365272-53365291 | None:intergenic | 20.0% |
| !! | AAAAGCTAAACAGTAAATAA+TGG | + | chr4_2:53365283-53365302 | None:intergenic | 20.0% |
| !!! | TTATTTACTGTTTAGCTTTT+AGG | - | chr4_2:53365283-53365302 | Msa0606740:intron | 20.0% |
| !! | TGAAAAATACATCAGATAAA+TGG | + | chr4_2:53365836-53365855 | None:intergenic | 20.0% |
| !! | TGATCATTTACTAATTGATA+TGG | + | chr4_2:53366020-53366039 | None:intergenic | 20.0% |
| !!! | TATGTATGTATTGATTGACA+TGG | - | chr4_2:53361108-53361127 | Msa0606740:CDS | 25.0% |
| !!! | ATGTATGTATTGATTGACAT+GGG | - | chr4_2:53361109-53361128 | Msa0606740:CDS | 25.0% |
| ! | TCAATCAAATCAAGGAAAAT+GGG | + | chr4_2:53361327-53361346 | None:intergenic | 25.0% |
| ! | TTCAATCAAATCAAGGAAAA+TGG | + | chr4_2:53361328-53361347 | None:intergenic | 25.0% |
| ! | AATTGAAATCAGTAACAACA+AGG | - | chr4_2:53361347-53361366 | Msa0606740:intron | 25.0% |
| !!! | TGCCATTACCATTTTTTTTA+TGG | - | chr4_2:53361401-53361420 | Msa0606740:intron | 25.0% |
| ! | TAACAACATGTTTATAAGTG+GGG | + | chr4_2:53361618-53361637 | None:intergenic | 25.0% |
| ! | CTAACAACATGTTTATAAGT+GGG | + | chr4_2:53361619-53361638 | None:intergenic | 25.0% |
| ! | TCTAACAACATGTTTATAAG+TGG | + | chr4_2:53361620-53361639 | None:intergenic | 25.0% |
| ! | AAGAACAGAATTTATTCAAC+GGG | + | chr4_2:53361702-53361721 | None:intergenic | 25.0% |
| ! | TGAAACAAAAGTAGATAACA+AGG | + | chr4_2:53361775-53361794 | None:intergenic | 25.0% |
| !!! | TGGATTTTGTTTTTTGATGA+AGG | + | chr4_2:53361999-53362018 | None:intergenic | 25.0% |
| ! | AATCTTACAAAGTGAAAAGA+TGG | + | chr4_2:53362113-53362132 | None:intergenic | 25.0% |
| ! | CTAGAAGAAATATCATGATA+TGG | - | chr4_2:53362134-53362153 | Msa0606740:CDS | 25.0% |
| ! | AATCATTCTTAATCTGGTAA+AGG | + | chr4_2:53362283-53362302 | None:intergenic | 25.0% |
| ! | AATAAATAGCTTCAACATCT+AGG | + | chr4_2:53362483-53362502 | None:intergenic | 25.0% |
| ! | AATACTATTAGAAAGAAAGG+GGG | + | chr4_2:53362711-53362730 | None:intergenic | 25.0% |
| !! | ATTATTGGTTAATGACTATG+TGG | - | chr4_2:53362975-53362994 | Msa0606740:intron | 25.0% |
| ! | TGAAATTATCAACCAAAATG+TGG | + | chr4_2:53363040-53363059 | None:intergenic | 25.0% |
| ! | CAAAATACCATTCACTAATT+AGG | + | chr4_2:53363481-53363500 | None:intergenic | 25.0% |
| ! | ACTATCAAAGAGAAATCAAA+AGG | + | chr4_2:53363756-53363775 | None:intergenic | 25.0% |
| !!! | TATCTTGTTTTTTACACAAG+AGG | + | chr4_2:53363862-53363881 | None:intergenic | 25.0% |
| ! | CTTGTGTAAAAAACAAGATA+AGG | - | chr4_2:53363862-53363881 | Msa0606740:intron | 25.0% |
| ! | AATGTCCAATTTAACAATCT+CGG | + | chr4_2:53364126-53364145 | None:intergenic | 25.0% |
| !! | ATTTATGTGGATTAAAGGAA+CGG | + | chr4_2:53364350-53364369 | None:intergenic | 25.0% |
| !! | ATGTTCCACTTTAATTTATG+TGG | + | chr4_2:53364363-53364382 | None:intergenic | 25.0% |
| ! | TTTATTAGGCTGTATACTAA+AGG | - | chr4_2:53364585-53364604 | Msa0606740:intron | 25.0% |
| !! | GACACTTTTGTACTTATTTA+TGG | - | chr4_2:53364636-53364655 | Msa0606740:intron | 25.0% |
| !! | CTTTTGTACTTATTTATGGT+TGG | - | chr4_2:53364640-53364659 | Msa0606740:intron | 25.0% |
| ! | TGGAAAAAAAGTAAATACCT+TGG | + | chr4_2:53364822-53364841 | None:intergenic | 25.0% |
| ! | AAATTGAAAGTTCAGTTAAG+AGG | + | chr4_2:53365501-53365520 | None:intergenic | 25.0% |
| ! | ATTATCACTTTGTACATGAA+TGG | - | chr4_2:53365728-53365747 | Msa0606740:intron | 25.0% |
| ! | AAGTTCACAGTTACATATAA+TGG | - | chr4_2:53365793-53365812 | Msa0606740:intron | 25.0% |
| !!! | GATGTCGATTTTAAGTAATT+GGG | + | chr4_2:53365885-53365904 | None:intergenic | 25.0% |
| !!! | TGATGTCGATTTTAAGTAAT+TGG | + | chr4_2:53365886-53365905 | None:intergenic | 25.0% |
| !!! | GTTCTTGTTTTGTTGTTGTT+GGG | + | chr4_2:53361158-53361177 | None:intergenic | 30.0% |
| !!! | TGTTCTTGTTTTGTTGTTGT+TGG | + | chr4_2:53361159-53361178 | None:intergenic | 30.0% |
| CAATCAAATCAAGGAAAATG+GGG | + | chr4_2:53361326-53361345 | None:intergenic | 30.0% | |
| GGCCATAAAAAAAATGGTAA+TGG | + | chr4_2:53361406-53361425 | None:intergenic | 30.0% | |
| TGCATAGGCCATAAAAAAAA+TGG | + | chr4_2:53361412-53361431 | None:intergenic | 30.0% | |
| TTCGTGATTCTTAGAAATTG+TGG | - | chr4_2:53361544-53361563 | Msa0606740:intron | 30.0% | |
| AACAACATGTTTATAAGTGG+GGG | + | chr4_2:53361617-53361636 | None:intergenic | 30.0% | |
| AGAACAGAATTTATTCAACG+GGG | + | chr4_2:53361701-53361720 | None:intergenic | 30.0% | |
| GGGAAAATAGCAAAAGTTAT+AGG | + | chr4_2:53361823-53361842 | None:intergenic | 30.0% | |
| ! | ACTTTTTGTTCCTATCTCAT+AGG | - | chr4_2:53361875-53361894 | Msa0606740:intron | 30.0% |
| CTATCTCATAGGAATCAATT+GGG | - | chr4_2:53361886-53361905 | Msa0606740:intron | 30.0% | |
| CTACAAAAAGGAATGAAACT+TGG | - | chr4_2:53361917-53361936 | Msa0606740:intron | 30.0% | |
| AATATCATGATATGGCAAGA+AGG | - | chr4_2:53362142-53362161 | Msa0606740:intron | 30.0% | |
| AGGTACAATCATTCTTAATC+TGG | + | chr4_2:53362289-53362308 | None:intergenic | 30.0% | |
| AATAGAAAACAACTGTTCCA+TGG | + | chr4_2:53362332-53362351 | None:intergenic | 30.0% | |
| ! | GTACAATAGAAAGAAGTACA+TGG | - | chr4_2:53362524-53362543 | Msa0606740:intron | 30.0% |
| AATTGTTCACAAATGCAACA+GGG | + | chr4_2:53362614-53362633 | None:intergenic | 30.0% | |
| AAATTGTTCACAAATGCAAC+AGG | + | chr4_2:53362615-53362634 | None:intergenic | 30.0% | |
| !! | ACCTAGTTTGTTAATCAACA+TGG | - | chr4_2:53363387-53363406 | Msa0606740:intron | 30.0% |
| ! | ACCATGTTGATTAACAAACT+AGG | + | chr4_2:53363391-53363410 | None:intergenic | 30.0% |
| TGAAGCTAAAACCTTTAACA+AGG | + | chr4_2:53363447-53363466 | None:intergenic | 30.0% | |
| ! | ACTTTTCCCTAATTAGTGAA+TGG | - | chr4_2:53363471-53363490 | Msa0606740:intron | 30.0% |
| TCAAGGTAAAACACATCTTA+AGG | + | chr4_2:53363665-53363684 | None:intergenic | 30.0% | |
| ! | ACCTTGAAAGCAATTTTGTT+TGG | - | chr4_2:53363678-53363697 | Msa0606740:intron | 30.0% |
| ACCAAACAAAATTGCTTTCA+AGG | + | chr4_2:53363682-53363701 | None:intergenic | 30.0% | |
| ! | TCTTTGATAGTAAGTTTGAC+AGG | - | chr4_2:53363765-53363784 | Msa0606740:intron | 30.0% |
| ! | CTTTGATAGTAAGTTTGACA+GGG | - | chr4_2:53363766-53363785 | Msa0606740:intron | 30.0% |
| TGAAAATTGTTTGCAAGTCT+CGG | - | chr4_2:53364086-53364105 | Msa0606740:intron | 30.0% | |
| ! | GTTAAATTGGACATTTTTCG+TGG | - | chr4_2:53364131-53364150 | Msa0606740:intron | 30.0% |
| ! | TTTATGTGGATTAAAGGAAC+GGG | + | chr4_2:53364349-53364368 | None:intergenic | 30.0% |
| !! | TACTTCAAAGTTTTTGGATG+CGG | + | chr4_2:53364398-53364417 | None:intergenic | 30.0% |
| GAAAAGAAGATCTTAAACGA+GGG | + | chr4_2:53364540-53364559 | None:intergenic | 30.0% | |
| TGAAAAGAAGATCTTAAACG+AGG | + | chr4_2:53364541-53364560 | None:intergenic | 30.0% | |
| CATTTATAAACTCTGTCAAC+CGG | + | chr4_2:53364784-53364803 | None:intergenic | 30.0% | |
| CTGATGTAAGCAAAAATGTA+TGG | + | chr4_2:53364943-53364962 | None:intergenic | 30.0% | |
| ! | CATACATTTTTGCTTACATC+AGG | - | chr4_2:53364941-53364960 | Msa0606740:intron | 30.0% |
| TCTAAACTAGTAAACAACAC+AGG | + | chr4_2:53365136-53365155 | None:intergenic | 30.0% | |
| ! | TTTTAATGCGACGTCTATTT+TGG | - | chr4_2:53365215-53365234 | Msa0606740:intron | 30.0% |
| ! | TTTAATGCGACGTCTATTTT+GGG | - | chr4_2:53365216-53365235 | Msa0606740:intron | 30.0% |
| GATTTCTCAAAAGAGTTACT+TGG | - | chr4_2:53365305-53365324 | Msa0606740:intron | 30.0% | |
| !! | ATTGACTGTTGTTGATTTGA+TGG | - | chr4_2:53365408-53365427 | Msa0606740:intron | 30.0% |
| ! | GTAATTGACTGTTGTTGATT+TGG | - | chr4_2:53365405-53365424 | Msa0606740:intron | 30.0% |
| TGATTGCTAAAATAGCAGTT+TGG | + | chr4_2:53365618-53365637 | None:intergenic | 30.0% | |
| ! | TTCTTTGAAGAAGAATACAC+CGG | - | chr4_2:53365963-53365982 | Msa0606740:five_prime_UTR | 30.0% |
| AATTCAGCAACAATATCTTC+CGG | + | chr4_2:53365985-53366004 | None:intergenic | 30.0% | |
| TATTGTTGCTGAATTAGAAG+AGG | - | chr4_2:53365990-53366009 | Msa0606740:five_prime_UTR | 30.0% | |
| ATAGAATAGGAACCTGTTTC+TGG | + | chr4_2:53361248-53361267 | None:intergenic | 35.0% | |
| ! | TTGATCTTGATCAAAAGCGT+TGG | + | chr4_2:53361438-53361457 | None:intergenic | 35.0% |
| ! | ATCCAATGTGGGACTTTTAA+CGG | - | chr4_2:53361649-53361668 | Msa0606740:intron | 35.0% |
| GAATTTATTCAACGGGGAAA+AGG | + | chr4_2:53361695-53361714 | None:intergenic | 35.0% | |
| AAATGCAGATGCTTGTTTGA+GGG | + | chr4_2:53361844-53361863 | None:intergenic | 35.0% | |
| ! | CCAATTGATTCCTATGAGAT+AGG | + | chr4_2:53361888-53361907 | None:intergenic | 35.0% |
| CCTATCTCATAGGAATCAAT+TGG | - | chr4_2:53361885-53361904 | Msa0606740:intron | 35.0% | |
| ! | TGGGTAGAGTATCTACAAAA+AGG | - | chr4_2:53361905-53361924 | Msa0606740:intron | 35.0% |
| AGAAACAGCTGATGAGTTAA+AGG | - | chr4_2:53362354-53362373 | Msa0606740:intron | 35.0% | |
| TACACCCTTTGAATAGATTC+TGG | + | chr4_2:53362387-53362406 | None:intergenic | 35.0% | |
| !! | GCATTGACACTGTTTTACAT+TGG | + | chr4_2:53362804-53362823 | None:intergenic | 35.0% |
| ATTCCACATTAACCACTTCA+AGG | + | chr4_2:53362847-53362866 | None:intergenic | 35.0% | |
| CTGTAGAAGTGGAAGATTAT+TGG | - | chr4_2:53362960-53362979 | Msa0606740:intron | 35.0% | |
| ! | TTCAAACAAGCACCACATTT+TGG | - | chr4_2:53363025-53363044 | Msa0606740:intron | 35.0% |
| TTAATAAATTGCCCCTAGTG+TGG | + | chr4_2:53363103-53363122 | None:intergenic | 35.0% | |
| TGCTTCTAATGAATCAGCAA+AGG | + | chr4_2:53363184-53363203 | None:intergenic | 35.0% | |
| !! | GCTGATTCATTAGAAGCATT+TGG | - | chr4_2:53363186-53363205 | Msa0606740:intron | 35.0% |
| !! | GATTCATTAGAAGCATTTGG+AGG | - | chr4_2:53363189-53363208 | Msa0606740:intron | 35.0% |
| ATACACTAACAGGATCATCA+TGG | + | chr4_2:53363218-53363237 | None:intergenic | 35.0% | |
| GATCCTGTTAGTGTATCAAT+TGG | - | chr4_2:53363222-53363241 | Msa0606740:intron | 35.0% | |
| ! | TGGTATTTTGCTTTCTAACC+AGG | - | chr4_2:53363491-53363510 | Msa0606740:intron | 35.0% |
| GTGATAAACTTGGATATGAC+GGG | + | chr4_2:53363518-53363537 | None:intergenic | 35.0% | |
| GGTGATAAACTTGGATATGA+CGG | + | chr4_2:53363519-53363538 | None:intergenic | 35.0% | |
| ! | ACAATAAAAGTGCAGCATTC+TGG | + | chr4_2:53363600-53363619 | None:intergenic | 35.0% |
| ! | AGAATGCTGCACTTTTATTG+TGG | - | chr4_2:53363599-53363618 | Msa0606740:intron | 35.0% |
| ATAGTAAGTTTGACAGGGTA+AGG | - | chr4_2:53363771-53363790 | Msa0606740:intron | 35.0% | |
| TTCCCTTTAGTAAGTTTGAC+AGG | - | chr4_2:53363957-53363976 | Msa0606740:intron | 35.0% | |
| AGCCTGTCAAACTTACTAAA+GGG | + | chr4_2:53363962-53363981 | None:intergenic | 35.0% | |
| CAATGCCGAGATTGTTAAAT+TGG | - | chr4_2:53364118-53364137 | Msa0606740:intron | 35.0% | |
| TGAAAACACACACACACAAA+GGG | + | chr4_2:53364183-53364202 | None:intergenic | 35.0% | |
| TCGAAAGACCTAACTTGAAT+GGG | - | chr4_2:53364305-53364324 | Msa0606740:intron | 35.0% | |
| !! | TTGTTTTCCCCATTCAAGTT+AGG | + | chr4_2:53364316-53364335 | None:intergenic | 35.0% |
| ! | ACACGCTACTTCAAAGTTTT+TGG | + | chr4_2:53364404-53364423 | None:intergenic | 35.0% |
| ! | TTCCTAGTTTACCTTTTCAC+TGG | - | chr4_2:53364448-53364467 | Msa0606740:intron | 35.0% |
| TTCCAGTGAAAAGGTAAACT+AGG | + | chr4_2:53364453-53364472 | None:intergenic | 35.0% | |
| ! | TTTACCTTTTCACTGGAAGA+AGG | - | chr4_2:53364455-53364474 | Msa0606740:intron | 35.0% |
| ! | TCTTTTCATGAAACCTTGCT+CGG | - | chr4_2:53364553-53364572 | Msa0606740:intron | 35.0% |
| TGTATAGGTAGAGCATGTAT+TGG | - | chr4_2:53364754-53364773 | Msa0606740:CDS | 35.0% | |
| !!! | CTTTTTTTCCACTCTCAAGT+TGG | - | chr4_2:53364831-53364850 | Msa0606740:intron | 35.0% |
| ATCTGTGCATTCTTATGATC+AGG | - | chr4_2:53364986-53365005 | Msa0606740:intron | 35.0% | |
| !! | TCTTGTCTTGTTTGTGTTGT+TGG | - | chr4_2:53365357-53365376 | Msa0606740:intron | 35.0% |
| TAAGAGGCAAATAAAGTGCA+GGG | + | chr4_2:53365485-53365504 | None:intergenic | 35.0% | |
| TTAAGAGGCAAATAAAGTGC+AGG | + | chr4_2:53365486-53365505 | None:intergenic | 35.0% | |
| ! | TTACGCAAGTCTTTTCATGA+TGG | + | chr4_2:53365655-53365674 | None:intergenic | 35.0% |
| CTTAAAATCGACATCAGTCA+TGG | - | chr4_2:53365890-53365909 | Msa0606740:CDS | 35.0% | |
| AAGATCAGACACAACAGCAA+TGG | - | chr4_2:53361185-53361204 | Msa0606740:intron | 40.0% | |
| TTCTCCAATGTTCCAGAAAC+AGG | - | chr4_2:53361233-53361252 | Msa0606740:intron | 40.0% | |
| !!! | CCTCACAAGCTTATTTTGTG+AGG | + | chr4_2:53361585-53361604 | None:intergenic | 40.0% |
| CCTCACAAAATAAGCTTGTG+AGG | - | chr4_2:53361582-53361601 | Msa0606740:intron | 40.0% | |
| CAAAATAAGCTTGTGAGGTG+AGG | - | chr4_2:53361587-53361606 | Msa0606740:intron | 40.0% | |
| AGACCATCTCTTATCCAATG+TGG | - | chr4_2:53361637-53361656 | Msa0606740:intron | 40.0% | |
| GACCATCTCTTATCCAATGT+GGG | - | chr4_2:53361638-53361657 | Msa0606740:intron | 40.0% | |
| !!! | ACTTTTAACGGTGATGGGAT+TGG | - | chr4_2:53361661-53361680 | Msa0606740:intron | 40.0% |
| ATAACAAGGAATCGTCGTTG+TGG | + | chr4_2:53361761-53361780 | None:intergenic | 40.0% | |
| AATGCAGATGCTTGTTTGAG+GGG | + | chr4_2:53361843-53361862 | None:intergenic | 40.0% | |
| GAAATGCAGATGCTTGTTTG+AGG | + | chr4_2:53361845-53361864 | None:intergenic | 40.0% | |
| GAAACTTGGATTCTTGCACA+AGG | - | chr4_2:53361931-53361950 | Msa0606740:intron | 40.0% | |
| ACTCAATTAAGAAAAGGGCG+CGG | + | chr4_2:53362032-53362051 | None:intergenic | 40.0% | |
| CAGCTGATGAGTTAAAGGAT+CGG | - | chr4_2:53362359-53362378 | Msa0606740:intron | 40.0% | |
| GGTGCCAGAATCTATTCAAA+GGG | - | chr4_2:53362380-53362399 | Msa0606740:intron | 40.0% | |
| !!! | GTACATGGCTTACTTTTTGC+CGG | - | chr4_2:53362539-53362558 | Msa0606740:intron | 40.0% |
| AACCACTTCAAGGTCTAGTT+TGG | + | chr4_2:53362837-53362856 | None:intergenic | 40.0% | |
| AGACCTTGAAGTGGTTAATG+TGG | - | chr4_2:53362841-53362860 | Msa0606740:intron | 40.0% | |
| TTTGGGTCTAACTGTAGAAG+TGG | - | chr4_2:53362949-53362968 | Msa0606740:intron | 40.0% | |
| AACAATTGTGGAACCACACT+AGG | - | chr4_2:53363087-53363106 | Msa0606740:intron | 40.0% | |
| ACAATTGTGGAACCACACTA+GGG | - | chr4_2:53363088-53363107 | Msa0606740:intron | 40.0% | |
| GCTTTCTTCTATATCTCCTC+AGG | - | chr4_2:53363124-53363143 | Msa0606740:intron | 40.0% | |
| ! | GCTATAGGGGAAGCATATAA+TGG | - | chr4_2:53363150-53363169 | Msa0606740:intron | 40.0% |
| !! | TCATTAGAAGCATTTGGAGG+TGG | - | chr4_2:53363192-53363211 | Msa0606740:intron | 40.0% |
| CCTCCAATTGATACACTAAC+AGG | + | chr4_2:53363228-53363247 | None:intergenic | 40.0% | |
| CCTGTTAGTGTATCAATTGG+AGG | - | chr4_2:53363225-53363244 | Msa0606740:intron | 40.0% | |
| AGTAGCTAATTCACGTAGTG+CGG | + | chr4_2:53363540-53363559 | None:intergenic | 40.0% | |
| ! | TTACACAAGAGGCTATTTCC+AGG | + | chr4_2:53363851-53363870 | None:intergenic | 40.0% |
| CGTACAATACACCAAATGGT+GGG | - | chr4_2:53363888-53363907 | Msa0606740:CDS | 40.0% | |
| AAACTTACTAAAGGGAAGCC+TGG | + | chr4_2:53363954-53363973 | None:intergenic | 40.0% | |
| CAGCCTGTCAAACTTACTAA+AGG | + | chr4_2:53363963-53363982 | None:intergenic | 40.0% | |
| ! | GGACATTTTTCGTGGTTACT+CGG | - | chr4_2:53364139-53364158 | Msa0606740:intron | 40.0% |
| ! | GACATTTTTCGTGGTTACTC+GGG | - | chr4_2:53364140-53364159 | Msa0606740:intron | 40.0% |
| GAAAACACACACACACAAAG+GGG | + | chr4_2:53364182-53364201 | None:intergenic | 40.0% | |
| CTGAAAACACACACACACAA+AGG | + | chr4_2:53364184-53364203 | None:intergenic | 40.0% | |
| ! | CTTTGTGTGTGTGTGTTTTC+AGG | - | chr4_2:53364182-53364201 | Msa0606740:intron | 40.0% |
| GTCGAAAGACCTAACTTGAA+TGG | - | chr4_2:53364304-53364323 | Msa0606740:intron | 40.0% | |
| CGAAAGACCTAACTTGAATG+GGG | - | chr4_2:53364306-53364325 | Msa0606740:intron | 40.0% | |
| GGTAAACTAGGAACTTCTAC+AGG | + | chr4_2:53364441-53364460 | None:intergenic | 40.0% | |
| CTTTCCTTCTTCCAGTGAAA+AGG | + | chr4_2:53364462-53364481 | None:intergenic | 40.0% | |
| ! | TGGAAGAAGGAAAGTTCTGA+AGG | - | chr4_2:53364468-53364487 | Msa0606740:intron | 40.0% |
| AAGAAGATCTTAAACGAGGG+AGG | + | chr4_2:53364537-53364556 | None:intergenic | 40.0% | |
| AAGCATGAGGAAGATGTCTT+TGG | + | chr4_2:53364672-53364691 | None:intergenic | 40.0% | |
| CAAGTCATCAACAAAGCATG+AGG | + | chr4_2:53364685-53364704 | None:intergenic | 40.0% | |
| !! | TAGAGCATGTATTGGTTGAC+CGG | - | chr4_2:53364762-53364781 | Msa0606740:intron | 40.0% |
| !! | TGTTGATTTGCAAGATGCCA+AGG | - | chr4_2:53364802-53364821 | Msa0606740:intron | 40.0% |
| AAGAAACACCAACTTGAGAG+TGG | + | chr4_2:53364842-53364861 | None:intergenic | 40.0% | |
| GCACAGATTTGTCAAAACGA+CGG | + | chr4_2:53364974-53364993 | None:intergenic | 40.0% | |
| ! | TGTTGTTGTTGGGTGAAGCT+CGG | + | chr4_2:53361148-53361167 | None:intergenic | 45.0% |
| !! | GGAACCTGTTTCTGGAACAT+TGG | + | chr4_2:53361240-53361259 | None:intergenic | 45.0% |
| !! | CAAAAGCGTTGGTGTTGCAT+AGG | + | chr4_2:53361427-53361446 | None:intergenic | 45.0% |
| GTCCCACATTGGATAAGAGA+TGG | + | chr4_2:53361643-53361662 | None:intergenic | 45.0% | |
| CACCGTTAAAAGTCCCACAT+TGG | + | chr4_2:53361654-53361673 | None:intergenic | 45.0% | |
| ! | TGTGGGACTTTTAACGGTGA+TGG | - | chr4_2:53361655-53361674 | Msa0606740:intron | 45.0% |
| ! | GTGGGACTTTTAACGGTGAT+GGG | - | chr4_2:53361656-53361675 | Msa0606740:intron | 45.0% |
| ! | CGGTGCCAGAATCTATTCAA+AGG | - | chr4_2:53362379-53362398 | Msa0606740:intron | 45.0% |
| TTGAAACAACCAGGAGTAGC+CGG | + | chr4_2:53362561-53362580 | None:intergenic | 45.0% | |
| ! | GCTACTCCTGGTTGTTTCAA+GGG | - | chr4_2:53362561-53362580 | Msa0606740:intron | 45.0% |
| ! | CTACTCCTGGTTGTTTCAAG+GGG | - | chr4_2:53362562-53362581 | Msa0606740:intron | 45.0% |
| GAAATCCCCTTGAAACAACC+AGG | + | chr4_2:53362570-53362589 | None:intergenic | 45.0% | |
| AGAAAGGGGGAGATTACAAC+TGG | + | chr4_2:53362698-53362717 | None:intergenic | 45.0% | |
| ! | CACTTCAAGGTCTAGTTTGG+TGG | + | chr4_2:53362834-53362853 | None:intergenic | 45.0% |
| CACCAAACTAGACCTTGAAG+TGG | - | chr4_2:53362832-53362851 | Msa0606740:intron | 45.0% | |
| GGTTAATGACTATGTGGTGC+TGG | - | chr4_2:53362981-53363000 | Msa0606740:intron | 45.0% | |
| CAATTGTGGAACCACACTAG+GGG | - | chr4_2:53363089-53363108 | Msa0606740:intron | 45.0% | |
| TATCTCCTCAGGACAGCTAT+AGG | - | chr4_2:53363135-53363154 | Msa0606740:intron | 45.0% | |
| ATCTCCTCAGGACAGCTATA+GGG | - | chr4_2:53363136-53363155 | Msa0606740:intron | 45.0% | |
| ACGTAGTGCGGTGATAAACT+TGG | + | chr4_2:53363528-53363547 | None:intergenic | 45.0% | |
| TAAAGAGCTTCTTCGCTCAC+AGG | - | chr4_2:53363562-53363581 | Msa0606740:CDS | 45.0% | |
| !! | AAGTGCAGCATTCTGGTTCA+AGG | + | chr4_2:53363593-53363612 | None:intergenic | 45.0% |
| AAGTTTGACAGGGTAAGGCT+TGG | - | chr4_2:53363776-53363795 | Msa0606740:intron | 45.0% | |
| GTTGTTGTCACGTGACTGAA+AGG | - | chr4_2:53363811-53363830 | Msa0606740:intron | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr4_2:53363884-53363903 | Msa0606740:CDS | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr4_2:53363887-53363906 | Msa0606740:CDS | 45.0% | |
| !! | TGTGTGTGTGTGTTTTCAGG+TGG | - | chr4_2:53364185-53364204 | Msa0606740:intron | 45.0% |
| TTGTGCGCAACAAAGCACAA+TGG | + | chr4_2:53364275-53364294 | None:intergenic | 45.0% | |
| TTTCATGAAACCTTGCTCGG+TGG | - | chr4_2:53364556-53364575 | Msa0606740:intron | 45.0% | |
| TTCATGAAACCTTGCTCGGT+GGG | - | chr4_2:53364557-53364576 | Msa0606740:intron | 45.0% | |
| !! | CTCGGTGGGTTGGATTTATT+AGG | - | chr4_2:53364571-53364590 | Msa0606740:intron | 45.0% |
| TCAAGGATTACTACCACTGC+TGG | + | chr4_2:53365562-53365581 | None:intergenic | 45.0% | |
| CTGTGAACTTGCGTAAGTCA+AGG | + | chr4_2:53365783-53365802 | None:intergenic | 45.0% | |
| !!! | TTTTCAAATATAATTATTAT+TGG | - | chr4_2:53361466-53361485 | Msa0606740:intron | 5.0% |
| !! | TTAAAAAAAAAAAAAAATAC+TGG | + | chr4_2:53365201-53365220 | None:intergenic | 5.0% |
| !! | AAGGGCGCGGATCTCATTTT+TGG | + | chr4_2:53362019-53362038 | None:intergenic | 50.0% |
| !! | TACTTTTTGCCGGCTACTCC+TGG | - | chr4_2:53362549-53362568 | Msa0606740:intron | 50.0% |
| ! | GGCTACTCCTGGTTGTTTCA+AGG | - | chr4_2:53362560-53362579 | Msa0606740:intron | 50.0% |
| !! | GTGGTGCTGGCTAAAAGACA+CGG | - | chr4_2:53362994-53363013 | Msa0606740:intron | 50.0% |
| TCTCCTCAGGACAGCTATAG+GGG | - | chr4_2:53363137-53363156 | Msa0606740:intron | 50.0% | |
| !! | AACTTGGATATGACGGGTCC+TGG | + | chr4_2:53363512-53363531 | None:intergenic | 50.0% |
| AAGGTCACAAGTTCGAGTCC+TGG | - | chr4_2:53363830-53363849 | Msa0606740:intron | 50.0% | |
| TTTGCAAGTCTCGGCTCAAC+TGG | - | chr4_2:53364095-53364114 | Msa0606740:intron | 50.0% | |
| !!! | GTGTGTTTTCAGGTGGTGCT+TGG | - | chr4_2:53364192-53364211 | Msa0606740:intron | 50.0% |
| TAAATCCAACCCACCGAGCA+AGG | + | chr4_2:53364569-53364588 | None:intergenic | 50.0% | |
| CTACCACTGCTGGAACAACT+AGG | + | chr4_2:53365552-53365571 | None:intergenic | 50.0% | |
| ! | GGTCTAGTTTGGTGGCACAG+TGG | + | chr4_2:53362826-53362845 | None:intergenic | 55.0% |
| CTTCCCCTATAGCTGTCCTG+AGG | + | chr4_2:53363143-53363162 | None:intergenic | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | + | chr4_2:53363927-53363946 | None:intergenic | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | + | chr4_2:53363928-53363947 | None:intergenic | 55.0% | |
| TGGTTACTCGGGTTCGAACC+CGG | - | chr4_2:53364151-53364170 | Msa0606740:intron | 55.0% | |
| ACACACAAAGGGGAGATCCC+GGG | + | chr4_2:53364172-53364191 | None:intergenic | 55.0% | |
| CACACACAAAGGGGAGATCC+CGG | + | chr4_2:53364173-53364192 | None:intergenic | 55.0% | |
| ! | TGAAACCTTGCTCGGTGGGT+TGG | - | chr4_2:53364561-53364580 | Msa0606740:intron | 55.0% |
| GAGCCTAGTTGTTCCAGCAG+TGG | - | chr4_2:53365546-53365565 | Msa0606740:intron | 55.0% | |
| CAGGGTAAGGCTTGGCGCAA+CGG | - | chr4_2:53363784-53363803 | Msa0606740:intron | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr4_2:53363900-53363919 | Msa0606740:CDS | 60.0% |
| ! | TGCGGGAGCTTTAGTGCACC+AGG | - | chr4_2:53363933-53363952 | Msa0606740:CDS | 60.0% |
| GGTTACTCGGGTTCGAACCC+GGG | - | chr4_2:53364152-53364171 | Msa0606740:intron | 60.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr4_2:53363902-53363921 | None:intergenic | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | + | chr4_2:53363915-53363934 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | + | chr4_2:53363916-53363935 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | - | chr4_2:53363915-53363934 | Msa0606740:CDS | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | - | chr4_2:53363916-53363935 | Msa0606740:CDS | 65.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | + | chr4_2:53363917-53363936 | None:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | + | chr4_2:53363921-53363940 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | + | chr4_2:53363922-53363941 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 53361075 | 53366043 | 53361075 | ID=Msa0606740;Name=Msa0606740 |
| chr4_2 | mRNA | 53361075 | 53366043 | 53361075 | ID=Msa0606740-mRNA-1;Parent=Msa0606740;Name=Msa0606740-mRNA-1;_AED=0.00;_eAED=0.00;_QI=129|1|1|1|1|1|7|14|163 |
| chr4_2 | exon | 53361075 | 53361172 | 53361075 | ID=Msa0606740-mRNA-1:exon:13162;Parent=Msa0606740-mRNA-1 |
| chr4_2 | exon | 53362111 | 53362155 | 53362111 | ID=Msa0606740-mRNA-1:exon:13161;Parent=Msa0606740-mRNA-1 |
| chr4_2 | exon | 53362295 | 53362357 | 53362295 | ID=Msa0606740-mRNA-1:exon:13160;Parent=Msa0606740-mRNA-1 |
| chr4_2 | exon | 53363535 | 53363605 | 53363535 | ID=Msa0606740-mRNA-1:exon:13159;Parent=Msa0606740-mRNA-1 |
| chr4_2 | exon | 53363872 | 53363972 | 53363872 | ID=Msa0606740-mRNA-1:exon:13158;Parent=Msa0606740-mRNA-1 |
| chr4_2 | exon | 53364702 | 53364778 | 53364702 | ID=Msa0606740-mRNA-1:exon:13157;Parent=Msa0606740-mRNA-1 |
| chr4_2 | exon | 53365864 | 53366043 | 53365864 | ID=Msa0606740-mRNA-1:exon:13156;Parent=Msa0606740-mRNA-1 |
| chr4_2 | five_prime_UTR | 53365915 | 53366043 | 53365915 | ID=Msa0606740-mRNA-1:five_prime_utr;Parent=Msa0606740-mRNA-1 |
| chr4_2 | CDS | 53365864 | 53365914 | 53365864 | ID=Msa0606740-mRNA-1:cds;Parent=Msa0606740-mRNA-1 |
| chr4_2 | CDS | 53364702 | 53364778 | 53364702 | ID=Msa0606740-mRNA-1:cds;Parent=Msa0606740-mRNA-1 |
| chr4_2 | CDS | 53363872 | 53363972 | 53363872 | ID=Msa0606740-mRNA-1:cds;Parent=Msa0606740-mRNA-1 |
| chr4_2 | CDS | 53363535 | 53363605 | 53363535 | ID=Msa0606740-mRNA-1:cds;Parent=Msa0606740-mRNA-1 |
| chr4_2 | CDS | 53362295 | 53362357 | 53362295 | ID=Msa0606740-mRNA-1:cds;Parent=Msa0606740-mRNA-1 |
| chr4_2 | CDS | 53362111 | 53362155 | 53362111 | ID=Msa0606740-mRNA-1:cds;Parent=Msa0606740-mRNA-1 |
| chr4_2 | CDS | 53361089 | 53361172 | 53361089 | ID=Msa0606740-mRNA-1:cds;Parent=Msa0606740-mRNA-1 |
| chr4_2 | three_prime_UTR | 53361075 | 53361088 | 53361075 | ID=Msa0606740-mRNA-1:three_prime_utr;Parent=Msa0606740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
