AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1185130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1185130 MtrunA17_Chr8g0350771 91.898 432 29 4 1 428 1 430 0.0 741
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1185130 AT4G00770.1 33.630 449 234 21 11 428 1 416 1.37e-37 142
Msa1185130 AT4G23020.2 25.647 464 263 22 14 429 19 448 1.49e-11 66.6
Msa1185130 AT4G23020.1 25.951 447 256 19 14 429 19 421 3.69e-11 65.1

Find 83 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTCACCTTTGCATCTT+TGG 0.045094 8_1:-21846735 None:intergenic
ACCCTTCATCATTCCTCTTT+TGG 0.168881 8_1:-21848736 None:intergenic
GTATTTCGGATGTACATATT+TGG 0.190940 8_1:+21848973 Msa1185130:three_prime_UTR
AAGAAATCCTTCAACATTCT+TGG 0.218670 8_1:-21846466 None:intergenic
TTAAAATATTCACATGATTC+TGG 0.219032 8_1:-21849036 None:intergenic
TCTTGGTGACCAATTTAAAA+TGG 0.239183 8_1:-21846222 None:intergenic
TTGAAACTTACTTTCAATAT+TGG 0.240740 8_1:-21848168 None:intergenic
TTTGGTCCTCCTCTTCCTTA+TGG 0.262976 8_1:-21848565 None:intergenic
GAAGAACATGAGTTTGAGTT+TGG 0.313923 8_1:-21846499 None:intergenic
GAATGATGAAGGGTTTGAAT+TGG 0.320393 8_1:+21848745 Msa1185130:CDS
TAGACTCTTGATAAAGAAAA+AGG 0.323105 8_1:-21846319 None:intergenic
TTTCACCCCTAAAAGTATTT+CGG 0.330567 8_1:+21848959 Msa1185130:exon
ATTCGGTGGCATCGTTCGTT+GGG 0.334833 8_1:+21847052 Msa1185130:CDS
CTATAAATGATGATTGTTCT+TGG 0.350469 8_1:-21846239 None:intergenic
CTGGACTTTGTTGTTCATCT+TGG 0.351202 8_1:-21848091 None:intergenic
ATTTGAATGGAGTTGGTAAT+TGG 0.359397 8_1:-21846556 None:intergenic
GCAACTCGAAGAACTGAAAC+TGG 0.364596 8_1:-21848110 None:intergenic
TAATCATAAGTGGTGAATTA+CGG 0.366999 8_1:+21846358 Msa1185130:five_prime_UTR
AATCATAAGTGGTGAATTAC+GGG 0.391168 8_1:+21846359 Msa1185130:five_prime_UTR
TTGGATGAGAATTCATACTA+TGG 0.398348 8_1:+21848524 Msa1185130:CDS
TTTCAATATTGGCAAGGCTT+TGG 0.404934 8_1:-21848157 None:intergenic
CAATTTAGATATAGTTCTGC+TGG 0.415490 8_1:+21848679 Msa1185130:CDS
GGAGCAAGATGAGATGGTTA+AGG 0.418517 8_1:+21848895 Msa1185130:CDS
CAATGAGAGACATTCATCTA+AGG 0.420733 8_1:-21848504 None:intergenic
AGATGCTTATATCAAAGAAA+TGG 0.429049 8_1:+21848841 Msa1185130:CDS
TGATGATAACTTGCGTGATA+AGG 0.429555 8_1:-21846698 None:intergenic
TGAGATGGTTAAGGAGATTG+AGG 0.445988 8_1:+21848904 Msa1185130:CDS
GATTCGGTGGCATCGTTCGT+TGG 0.446796 8_1:+21847051 Msa1185130:CDS
AGGTGTGTGGAGCAGATTTG+AGG 0.447311 8_1:+21848871 Msa1185130:CDS
TGAGGAGGAGCAAGATGAGA+TGG 0.454037 8_1:+21848889 Msa1185130:CDS
CATTCTTGGTCTTCTCTCCA+TGG 0.454188 8_1:-21846452 None:intergenic
TAATGAAAATTGCTGAGGAT+TGG 0.457153 8_1:+21848771 Msa1185130:CDS
CTTGGTGACCAATTTAAAAT+GGG 0.458170 8_1:-21846221 None:intergenic
ACAAGTTTGGATTGAGGAAA+GGG 0.459997 8_1:+21848598 Msa1185130:CDS
CGAAAATCAAACGGCGATAA+CGG 0.481908 8_1:-21846853 None:intergenic
GGCATCGTTCGTTGGGGACA+AGG 0.488211 8_1:+21847059 Msa1185130:CDS
AGAATATAAAGACGACCATA+AGG 0.493844 8_1:+21848550 Msa1185130:CDS
CTTAGATGAATGTCTCTCAT+TGG 0.500361 8_1:+21848505 Msa1185130:CDS
TGGTAGTGAGAGGATGGTGG+AGG 0.501655 8_1:-21846671 None:intergenic
TCAAACTCATGTTCTTCAAG+TGG 0.511370 8_1:+21846505 Msa1185130:CDS
AGTGAGAGGATGGTGGAGGG+TGG 0.513983 8_1:-21846667 None:intergenic
GAGAAGACCAAGAATGTTGA+AGG 0.515311 8_1:+21846459 Msa1185130:CDS
AAACTCAACGTAATCATAAG+TGG 0.515575 8_1:+21846348 Msa1185130:five_prime_UTR
AACGGCGATAACGGTGGTGA+TGG 0.516312 8_1:-21846844 None:intergenic
GGTTCGTGGTAGTGAGAGGA+TGG 0.528255 8_1:-21846677 None:intergenic
GTAGCGACGGTGATTCTAGT+TGG 0.532871 8_1:+21846932 Msa1185130:CDS
AACCAAAAGAGGAATGATGA+AGG 0.539948 8_1:+21848734 Msa1185130:CDS
ACTTACTTTCAATATTGGCA+AGG 0.540349 8_1:-21848163 None:intergenic
TCGTGGTAGTGAGAGGATGG+TGG 0.542013 8_1:-21846674 None:intergenic
CTTATATCAAAGAAATGGAT+AGG 0.552563 8_1:+21848846 Msa1185130:CDS
GACATTCATCTAAGGCTACC+AGG 0.552902 8_1:-21848496 None:intergenic
GAATGAAATGATAGAGTTGG+TGG 0.554740 8_1:-21846184 None:intergenic
AACAAGTTTGGATTGAGGAA+AGG 0.558522 8_1:+21848597 Msa1185130:CDS
ACAAAACGCCGAAAATCAAA+CGG 0.560310 8_1:-21846862 None:intergenic
TAAAGACGACCATAAGGAAG+AGG 0.561640 8_1:+21848556 Msa1185130:CDS
TGAAGAACAAGTTTGGATTG+AGG 0.563495 8_1:+21848592 Msa1185130:CDS
GGTAGTGAGAGGATGGTGGA+GGG 0.564299 8_1:-21846670 None:intergenic
ATGTGAGTGGTGGATTTGAA+TGG 0.564695 8_1:-21846569 None:intergenic
AACTTGCGTGATAAGGTTCG+TGG 0.577209 8_1:-21846691 None:intergenic
GTGGTGGATTTGAATGGAGT+TGG 0.578257 8_1:-21846563 None:intergenic
AAATCAAAGACATCATGCGT+TGG 0.582069 8_1:+21846785 Msa1185130:CDS
AACGACGACGTTGAAGAGAG+TGG 0.586326 8_1:+21846994 Msa1185130:CDS
GGAGATAATGAAAATTGCTG+AGG 0.589300 8_1:+21848766 Msa1185130:CDS
TTCGGTGGCATCGTTCGTTG+GGG 0.603222 8_1:+21847053 Msa1185130:CDS
ACCAAAAGAGGAATGATGAA+GGG 0.607849 8_1:+21848735 Msa1185130:CDS
ATGATGATGAATGTGAGTGG+TGG 0.609047 8_1:-21846579 None:intergenic
AATGAATGAAATGATAGAGT+TGG 0.610196 8_1:-21846187 None:intergenic
GTGGTAATAGAAACCAAAAG+AGG 0.610527 8_1:+21848723 Msa1185130:CDS
AAATGGATAGGAGAGGTGTG+TGG 0.614524 8_1:+21848858 Msa1185130:CDS
ACTACTGCAACGACATATTG+TGG 0.623891 8_1:+21846904 Msa1185130:CDS
AGAACAAGCCAAAGATGCAA+AGG 0.624593 8_1:+21846727 Msa1185130:CDS
ATAAGGTTCGTGGTAGTGAG+AGG 0.628338 8_1:-21846681 None:intergenic
AAATCAAACGGCGATAACGG+TGG 0.633790 8_1:-21846850 None:intergenic
AGACGACCATAAGGAAGAGG+AGG 0.638078 8_1:+21848559 Msa1185130:CDS
TGTGTGGAGCAGATTTGAGG+AGG 0.647051 8_1:+21848874 Msa1185130:CDS
ATCAAAGAAATGGATAGGAG+AGG 0.647321 8_1:+21848851 Msa1185130:CDS
GAGTCATGCAAAATTTGACC+TGG 0.658494 8_1:+21848478 Msa1185130:CDS
GGTGGTGATGGAATCGTCGA+CGG 0.664900 8_1:-21846832 None:intergenic
TATTGTGGTAGTAGTAGCGA+CGG 0.672651 8_1:+21846919 Msa1185130:CDS
GGTGATTCTAGTTGGAGTGA+CGG 0.678139 8_1:+21846940 Msa1185130:CDS
AATCGAAATCGAATCAAGCA+CGG 0.679656 8_1:+21846759 Msa1185130:CDS
ACAAAGAAGATTCAACACCA+TGG 0.680203 8_1:+21846435 Msa1185130:CDS
ATGATGATGATGAATGTGAG+TGG 0.689123 8_1:-21846582 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATTAAAGAAATAATGA+TGG + chr8_1:21847332-21847351 Msa1185130:intron 10.0%
!!! TACTTTTTTTTTTTTTTTGT+CGG + chr8_1:21847400-21847419 Msa1185130:intron 10.0%
!! CTATATATTCTATAAATATT+TGG - chr8_1:21847484-21847503 None:intergenic 10.0%
!! TATGATATTTATATAAAGTT+TGG + chr8_1:21847744-21847763 Msa1185130:intron 10.0%
!! ATGATATTTATATAAAGTTT+GGG + chr8_1:21847745-21847764 Msa1185130:intron 10.0%
!! TCATAAAACAAAATAATTTA+TGG + chr8_1:21847873-21847892 Msa1185130:intron 10.0%
!!! ATGTTATTTTTTTTTTTTTG+AGG + chr8_1:21847969-21847988 Msa1185130:intron 10.0%
!!! TGTTATTTTTTTTTTTTTGA+GGG + chr8_1:21847970-21847989 Msa1185130:intron 10.0%
!!! GTTTTTTATGGTTTTTATTA+GGG - chr8_1:21846620-21846639 None:intergenic 15.0%
!!! TGTTTTTTATGGTTTTTATT+AGG - chr8_1:21846621-21846640 None:intergenic 15.0%
!! TTCTTTATAGAAAAAAACAA+TGG + chr8_1:21847135-21847154 Msa1185130:intron 15.0%
!! AATATTCTATCATATTCTAT+TGG - chr8_1:21847197-21847216 None:intergenic 15.0%
!! TAGAATATGATAGAATATTA+TGG + chr8_1:21847198-21847217 Msa1185130:intron 15.0%
!! AAATAATCAATGTTATAAAC+TGG + chr8_1:21847518-21847537 Msa1185130:intron 15.0%
!! TTGTCAAAAAATATAAAAAG+AGG + chr8_1:21847629-21847648 Msa1185130:intron 15.0%
!! TGTCAAAAAATATAAAAAGA+GGG + chr8_1:21847630-21847649 Msa1185130:intron 15.0%
!! TGATATTTATATAAAGTTTG+GGG + chr8_1:21847746-21847765 Msa1185130:intron 15.0%
!!! TTTGTGTTACTAATAATTTA+TGG + chr8_1:21847843-21847862 Msa1185130:intron 15.0%
!!! AATTAGTAATTTTGCAAAAT+TGG + chr8_1:21848228-21848247 Msa1185130:intron 15.0%
!! AGAGTTAAATAGTTAAATAT+TGG - chr8_1:21848273-21848292 None:intergenic 15.0%
!! AAATTGTTAAATTTCTTGAT+TGG - chr8_1:21848300-21848319 None:intergenic 15.0%
!!! TAGACATTTCTTTTTGAAAA+TGG + chr8_1:21846405-21846424 Msa1185130:exon 20.0%
!!! TTGTTTTCTTCTTTTTTTGT+CGG + chr8_1:21847024-21847043 Msa1185130:CDS 20.0%
!! AACTATAGTGCATAAAATAT+AGG - chr8_1:21847163-21847182 None:intergenic 20.0%
!!! AAACTACTATTGTCTTTTTT+TGG - chr8_1:21847380-21847399 None:intergenic 20.0%
!!! TTTTTTTTTTTTTTTGTCGG+TGG + chr8_1:21847403-21847422 Msa1185130:intron 20.0%
!!! TTTTTTTTTTTTTTGTCGGT+GGG + chr8_1:21847404-21847423 Msa1185130:intron 20.0%
!!! CATATTTTATACCAAAAAAG+TGG - chr8_1:21847603-21847622 None:intergenic 20.0%
!! TAATATAACAACTTATATGC+TGG - chr8_1:21847717-21847736 None:intergenic 20.0%
!! GATATTTATATAAAGTTTGG+GGG + chr8_1:21847747-21847766 Msa1185130:intron 20.0%
!! ATATTTATATAAAGTTTGGG+GGG + chr8_1:21847748-21847767 Msa1185130:intron 20.0%
!! TTGAAACTTACTTTCAATAT+TGG - chr8_1:21848171-21848190 None:intergenic 20.0%
!! AGAAATTTAACAATTTGAGT+TGG + chr8_1:21848304-21848323 Msa1185130:intron 20.0%
!!! TACCAATAATGTTTGATTTT+TGG + chr8_1:21848410-21848429 Msa1185130:intron 20.0%
!! TTCCAAAAATCAAACATTAT+TGG - chr8_1:21848415-21848434 None:intergenic 20.0%
!! TTAAAATATTCACATGATTC+TGG - chr8_1:21849039-21849058 None:intergenic 20.0%
! AATGAATGAAATGATAGAGT+TGG - chr8_1:21846190-21846209 None:intergenic 25.0%
! CTATAAATGATGATTGTTCT+TGG - chr8_1:21846242-21846261 None:intergenic 25.0%
!! CGATTCTTTTGTAATAACAA+TGG - chr8_1:21846277-21846296 None:intergenic 25.0%
! TAGACTCTTGATAAAGAAAA+AGG - chr8_1:21846322-21846341 None:intergenic 25.0%
! TAATCATAAGTGGTGAATTA+CGG + chr8_1:21846358-21846377 Msa1185130:five_prime_UTR 25.0%
!!! ACATTTCTTTTTGAAAATGG+AGG + chr8_1:21846408-21846427 Msa1185130:exon 25.0%
! AAATTACTAATTCTGTAGGT+TGG - chr8_1:21848220-21848239 None:intergenic 25.0%
! TGCAAAATTACTAATTCTGT+AGG - chr8_1:21848224-21848243 None:intergenic 25.0%
!!! TAATGTTTGATTTTTGGAAC+AGG + chr8_1:21848416-21848435 Msa1185130:intron 25.0%
!!! AATGTTTGATTTTTGGAACA+GGG + chr8_1:21848417-21848436 Msa1185130:intron 25.0%
!!! AAACTTGTTCTTCAGTTTTT+TGG - chr8_1:21848586-21848605 None:intergenic 25.0%
! AAAAAACTGAAGAACAAGTT+TGG + chr8_1:21848585-21848604 Msa1185130:CDS 25.0%
! AGATGCTTATATCAAAGAAA+TGG + chr8_1:21848841-21848860 Msa1185130:CDS 25.0%
! CTTATATCAAAGAAATGGAT+AGG + chr8_1:21848846-21848865 Msa1185130:CDS 25.0%
! TTTCGTCACCCATTTTAAAT+TGG + chr8_1:21846213-21846232 Msa1185130:five_prime_UTR 30.0%
! CTTGGTGACCAATTTAAAAT+GGG - chr8_1:21846224-21846243 None:intergenic 30.0%
! TCTTGGTGACCAATTTAAAA+TGG - chr8_1:21846225-21846244 None:intergenic 30.0%
ACTCTTGATAAAGAAAAAGG+TGG - chr8_1:21846319-21846338 None:intergenic 30.0%
AAACTCAACGTAATCATAAG+TGG + chr8_1:21846348-21846367 Msa1185130:five_prime_UTR 30.0%
AATCATAAGTGGTGAATTAC+GGG + chr8_1:21846359-21846378 Msa1185130:five_prime_UTR 30.0%
AAGAAATCCTTCAACATTCT+TGG - chr8_1:21846469-21846488 None:intergenic 30.0%
!!! GTAATTGGTTTTGTTGTTCT+TGG - chr8_1:21846544-21846563 None:intergenic 30.0%
!! ATTTGAATGGAGTTGGTAAT+TGG - chr8_1:21846559-21846578 None:intergenic 30.0%
!!! GAATGTGACGTTGTTTTTTA+TGG - chr8_1:21846632-21846651 None:intergenic 30.0%
!!! TGATTTTTTTAGTGAGCTGT+GGG + chr8_1:21846963-21846982 Msa1185130:CDS 30.0%
CGGATCTTGAGTTTATTTAT+CGG + chr8_1:21847453-21847472 Msa1185130:intron 30.0%
GGATCTTGAGTTTATTTATC+GGG + chr8_1:21847454-21847473 Msa1185130:intron 30.0%
GATCTTGAGTTTATTTATCG+GGG + chr8_1:21847455-21847474 Msa1185130:intron 30.0%
ATCTTGAGTTTATTTATCGG+GGG + chr8_1:21847456-21847475 Msa1185130:intron 30.0%
AATGTTATAAACTGGTGTGA+TGG + chr8_1:21847526-21847545 Msa1185130:intron 30.0%
AAGTGAATAATTGTGACATG+AGG + chr8_1:21847552-21847571 Msa1185130:intron 30.0%
AGTGAATAATTGTGACATGA+GGG + chr8_1:21847553-21847572 Msa1185130:intron 30.0%
! TAACATCTAACGTTGCTATT+AGG + chr8_1:21848012-21848031 Msa1185130:intron 30.0%
ACTTACTTTCAATATTGGCA+AGG - chr8_1:21848166-21848185 None:intergenic 30.0%
GTCTAATAATGCATAACACA+TGG - chr8_1:21848198-21848217 None:intergenic 30.0%
TTGGATGAGAATTCATACTA+TGG + chr8_1:21848524-21848543 Msa1185130:CDS 30.0%
AGAATATAAAGACGACCATA+AGG + chr8_1:21848550-21848569 Msa1185130:CDS 30.0%
! CAATTTAGATATAGTTCTGC+TGG + chr8_1:21848679-21848698 Msa1185130:CDS 30.0%
!!! TTTTTCAAGGAAGAACTAAG+TGG + chr8_1:21848704-21848723 Msa1185130:CDS 30.0%
TAATGAAAATTGCTGAGGAT+TGG + chr8_1:21848771-21848790 Msa1185130:CDS 30.0%
!! TTTCACCCCTAAAAGTATTT+CGG + chr8_1:21848959-21848978 Msa1185130:exon 30.0%
! TACATCCGAAATACTTTTAG+GGG - chr8_1:21848967-21848986 None:intergenic 30.0%
! GTACATCCGAAATACTTTTA+GGG - chr8_1:21848968-21848987 None:intergenic 30.0%
! TGTACATCCGAAATACTTTT+AGG - chr8_1:21848969-21848988 None:intergenic 30.0%
GTATTTCGGATGTACATATT+TGG + chr8_1:21848973-21848992 Msa1185130:three_prime_UTR 30.0%
GAATGAAATGATAGAGTTGG+TGG - chr8_1:21846187-21846206 None:intergenic 35.0%
ACAAAGAAGATTCAACACCA+TGG + chr8_1:21846435-21846454 Msa1185130:CDS 35.0%
! GAAGAACATGAGTTTGAGTT+TGG - chr8_1:21846502-21846521 None:intergenic 35.0%
TCAAACTCATGTTCTTCAAG+TGG + chr8_1:21846505-21846524 Msa1185130:CDS 35.0%
! ATGATGATGATGAATGTGAG+TGG - chr8_1:21846585-21846604 None:intergenic 35.0%
! TGATGATAACTTGCGTGATA+AGG - chr8_1:21846701-21846720 None:intergenic 35.0%
AATCGAAATCGAATCAAGCA+CGG + chr8_1:21846759-21846778 Msa1185130:CDS 35.0%
AAATCAAAGACATCATGCGT+TGG + chr8_1:21846785-21846804 Msa1185130:CDS 35.0%
ACAAAACGCCGAAAATCAAA+CGG - chr8_1:21846865-21846884 None:intergenic 35.0%
!!! GTGATTTTTTTAGTGAGCTG+TGG + chr8_1:21846962-21846981 Msa1185130:CDS 35.0%
!!! TTCTTCTTTTTTTGTCGGCA+AGG + chr8_1:21847029-21847048 Msa1185130:CDS 35.0%
!!! TTTTTTTGTCGGCAAGGATT+CGG + chr8_1:21847035-21847054 Msa1185130:CDS 35.0%
!!! TTTTTTTTTTTGTCGGTGGG+AGG + chr8_1:21847407-21847426 Msa1185130:intron 35.0%
!! AATATAAAAAGAGGGTGCCA+TGG + chr8_1:21847638-21847657 Msa1185130:intron 35.0%
!! ATATAAAAAGAGGGTGCCAT+GGG + chr8_1:21847639-21847658 Msa1185130:intron 35.0%
TCTGTCTGTATATCAGTAGA+AGG - chr8_1:21847679-21847698 None:intergenic 35.0%
AACCTGTATGTAATCTTGAC+AGG + chr8_1:21848055-21848074 Msa1185130:intron 35.0%
ATCCTGTCAAGATTACATAC+AGG - chr8_1:21848060-21848079 None:intergenic 35.0%
TTTCAATATTGGCAAGGCTT+TGG - chr8_1:21848160-21848179 None:intergenic 35.0%
CAATGAGAGACATTCATCTA+AGG - chr8_1:21848507-21848526 None:intergenic 35.0%
CTTAGATGAATGTCTCTCAT+TGG + chr8_1:21848505-21848524 Msa1185130:CDS 35.0%
TGAAGAACAAGTTTGGATTG+AGG + chr8_1:21848592-21848611 Msa1185130:CDS 35.0%
AACAAGTTTGGATTGAGGAA+AGG + chr8_1:21848597-21848616 Msa1185130:CDS 35.0%
ACAAGTTTGGATTGAGGAAA+GGG + chr8_1:21848598-21848617 Msa1185130:CDS 35.0%
!!! AGTTCTGCTGGATTTTTTCA+AGG + chr8_1:21848691-21848710 Msa1185130:CDS 35.0%
GTGGTAATAGAAACCAAAAG+AGG + chr8_1:21848723-21848742 Msa1185130:CDS 35.0%
AACCAAAAGAGGAATGATGA+AGG + chr8_1:21848734-21848753 Msa1185130:CDS 35.0%
ACCAAAAGAGGAATGATGAA+GGG + chr8_1:21848735-21848754 Msa1185130:CDS 35.0%
GAATGATGAAGGGTTTGAAT+TGG + chr8_1:21848745-21848764 Msa1185130:CDS 35.0%
GGAGATAATGAAAATTGCTG+AGG + chr8_1:21848766-21848785 Msa1185130:CDS 35.0%
ATCAAAGAAATGGATAGGAG+AGG + chr8_1:21848851-21848870 Msa1185130:CDS 35.0%
GAGAAGACCAAGAATGTTGA+AGG + chr8_1:21846459-21846478 Msa1185130:CDS 40.0%
!! ATGTGAGTGGTGGATTTGAA+TGG - chr8_1:21846572-21846591 None:intergenic 40.0%
! ATGATGATGAATGTGAGTGG+TGG - chr8_1:21846582-21846601 None:intergenic 40.0%
AGAACAAGCCAAAGATGCAA+AGG + chr8_1:21846727-21846746 Msa1185130:CDS 40.0%
CTCTTTCACCTTTGCATCTT+TGG - chr8_1:21846738-21846757 None:intergenic 40.0%
CGAAAATCAAACGGCGATAA+CGG - chr8_1:21846856-21846875 None:intergenic 40.0%
!! CGTTATCGCCGTTTGATTTT+CGG + chr8_1:21846854-21846873 Msa1185130:CDS 40.0%
! TGATTTTCGGCGTTTTGTGA+CGG + chr8_1:21846867-21846886 Msa1185130:CDS 40.0%
ACTACTGCAACGACATATTG+TGG + chr8_1:21846904-21846923 Msa1185130:CDS 40.0%
TATTGTGGTAGTAGTAGCGA+CGG + chr8_1:21846919-21846938 Msa1185130:CDS 40.0%
!! TATAAAAAGAGGGTGCCATG+GGG + chr8_1:21847640-21847659 Msa1185130:intron 40.0%
! CAACTTATATGCTGGTGTTG+CGG - chr8_1:21847709-21847728 None:intergenic 40.0%
!! CTGGACTTTGTTGTTCATCT+TGG - chr8_1:21848094-21848113 None:intergenic 40.0%
GAGTCATGCAAAATTTGACC+TGG + chr8_1:21848478-21848497 Msa1185130:CDS 40.0%
TAAAGACGACCATAAGGAAG+AGG + chr8_1:21848556-21848575 Msa1185130:CDS 40.0%
! ACCCTTCATCATTCCTCTTT+TGG - chr8_1:21848739-21848758 None:intergenic 40.0%
TGAGATGGTTAAGGAGATTG+AGG + chr8_1:21848904-21848923 Msa1185130:CDS 40.0%
!! AACGCAGTTTTTGTGCTGTT+TGG + chr8_1:21849003-21849022 Msa1185130:three_prime_UTR 40.0%
! CATTCTTGGTCTTCTCTCCA+TGG - chr8_1:21846455-21846474 None:intergenic 45.0%
!! GTGGTGGATTTGAATGGAGT+TGG - chr8_1:21846566-21846585 None:intergenic 45.0%
! ATAAGGTTCGTGGTAGTGAG+AGG - chr8_1:21846684-21846703 None:intergenic 45.0%
AACTTGCGTGATAAGGTTCG+TGG - chr8_1:21846694-21846713 None:intergenic 45.0%
! AAATCAAACGGCGATAACGG+TGG - chr8_1:21846853-21846872 None:intergenic 45.0%
!! TTTTGTGACGGAATCGTCGA+CGG + chr8_1:21846879-21846898 Msa1185130:CDS 45.0%
! GGTGATTCTAGTTGGAGTGA+CGG + chr8_1:21846940-21846959 Msa1185130:CDS 45.0%
ATAAACTCAAGATCCGCCAC+TGG - chr8_1:21847449-21847468 None:intergenic 45.0%
AATTGTGACATGAGGGACAC+CGG + chr8_1:21847560-21847579 Msa1185130:intron 45.0%
ACCAAAAAAGTGGACCCAGT+GGG - chr8_1:21847593-21847612 None:intergenic 45.0%
TACCAAAAAAGTGGACCCAG+TGG - chr8_1:21847594-21847613 None:intergenic 45.0%
GCAACTCGAAGAACTGAAAC+TGG - chr8_1:21848113-21848132 None:intergenic 45.0%
! GACATTCATCTAAGGCTACC+AGG - chr8_1:21848499-21848518 None:intergenic 45.0%
TTTGGTCCTCCTCTTCCTTA+TGG - chr8_1:21848568-21848587 None:intergenic 45.0%
! AAATGGATAGGAGAGGTGTG+TGG + chr8_1:21848858-21848877 Msa1185130:CDS 45.0%
GGAGCAAGATGAGATGGTTA+AGG + chr8_1:21848895-21848914 Msa1185130:CDS 45.0%
!! TATTTAATTAAATTAAGTAT+AGG + chr8_1:21847224-21847243 Msa1185130:intron 5.0%
GTAGCGACGGTGATTCTAGT+TGG + chr8_1:21846932-21846951 Msa1185130:CDS 50.0%
AACGACGACGTTGAAGAGAG+TGG + chr8_1:21846994-21847013 Msa1185130:CDS 50.0%
! TTTTGTCGGCAAGGATTCGG+TGG + chr8_1:21847038-21847057 Msa1185130:CDS 50.0%
! ATTCGGTGGCATCGTTCGTT+GGG + chr8_1:21847052-21847071 Msa1185130:CDS 50.0%
CCAAAAAAGTGGACCCAGTG+GGG - chr8_1:21847592-21847611 None:intergenic 50.0%
!! CTTATATGCTGGTGTTGCGG+CGG - chr8_1:21847706-21847725 None:intergenic 50.0%
! ATAAAGTTTGGGGGGTGCAG+TGG + chr8_1:21847756-21847775 Msa1185130:intron 50.0%
AGACGACCATAAGGAAGAGG+AGG + chr8_1:21848559-21848578 Msa1185130:CDS 50.0%
AGGTGTGTGGAGCAGATTTG+AGG + chr8_1:21848871-21848890 Msa1185130:CDS 50.0%
TGTGTGGAGCAGATTTGAGG+AGG + chr8_1:21848874-21848893 Msa1185130:CDS 50.0%
TGAGGAGGAGCAAGATGAGA+TGG + chr8_1:21848889-21848908 Msa1185130:CDS 50.0%
!! GGTAGTGAGAGGATGGTGGA+GGG - chr8_1:21846673-21846692 None:intergenic 55.0%
! TGGTAGTGAGAGGATGGTGG+AGG - chr8_1:21846674-21846693 None:intergenic 55.0%
! TCGTGGTAGTGAGAGGATGG+TGG - chr8_1:21846677-21846696 None:intergenic 55.0%
! GGTTCGTGGTAGTGAGAGGA+TGG - chr8_1:21846680-21846699 None:intergenic 55.0%
!! GGTGGTGATGGAATCGTCGA+CGG - chr8_1:21846835-21846854 None:intergenic 55.0%
! AACGGCGATAACGGTGGTGA+TGG - chr8_1:21846847-21846866 None:intergenic 55.0%
!! GATTCGGTGGCATCGTTCGT+TGG + chr8_1:21847051-21847070 Msa1185130:CDS 55.0%
TTCGGTGGCATCGTTCGTTG+GGG + chr8_1:21847053-21847072 Msa1185130:CDS 55.0%
!! ACACCGGTTCAAACCCCACT+GGG + chr8_1:21847576-21847595 Msa1185130:intron 55.0%
!!! CCCCACTGGGTCCACTTTTT+TGG + chr8_1:21847589-21847608 Msa1185130:intron 55.0%
! GGATCTCTTTAGAGACCCCC+AGG - chr8_1:21847784-21847803 None:intergenic 55.0%
! TCTCTAAAGAGATCCGCCCC+TGG + chr8_1:21847789-21847808 Msa1185130:intron 55.0%
TATACAACTGCCCGAGCCAG+GGG - chr8_1:21847808-21847827 None:intergenic 55.0%
CTATACAACTGCCCGAGCCA+GGG - chr8_1:21847809-21847828 None:intergenic 55.0%
TCTATACAACTGCCCGAGCC+AGG - chr8_1:21847810-21847829 None:intergenic 55.0%
!! AGTGAGAGGATGGTGGAGGG+TGG - chr8_1:21846670-21846689 None:intergenic 60.0%
GGCATCGTTCGTTGGGGACA+AGG + chr8_1:21847059-21847078 Msa1185130:CDS 60.0%
!! GACACCGGTTCAAACCCCAC+TGG + chr8_1:21847575-21847594 Msa1185130:intron 60.0%
GGACCCAGTGGGGTTTGAAC+CGG - chr8_1:21847582-21847601 None:intergenic 60.0%
AAAGAGATCCGCCCCTGGCT+CGG + chr8_1:21847794-21847813 Msa1185130:intron 60.0%
GTGGGAGGTTGCTGCCTGCT+CGG + chr8_1:21847422-21847441 Msa1185130:intron 65.0%
TGGGAGGTTGCTGCCTGCTC+GGG + chr8_1:21847423-21847442 Msa1185130:intron 65.0%
GGTCGCGTGTTCGAACCCCA+TGG - chr8_1:21847658-21847677 None:intergenic 65.0%
AAGAGATCCGCCCCTGGCTC+GGG + chr8_1:21847795-21847814 Msa1185130:intron 65.0%
TTGCTGCCTGCTCGGGCCAG+TGG + chr8_1:21847430-21847449 Msa1185130:intron 70.0%
! TTGGGGGGTGCAGTGGCACC+TGG + chr8_1:21847763-21847782 Msa1185130:intron 70.0%
! TGGGGGGTGCAGTGGCACCT+GGG + chr8_1:21847764-21847783 Msa1185130:intron 70.0%
ACAACTGCCCGAGCCAGGGG+CGG - chr8_1:21847805-21847824 None:intergenic 70.0%
CTGCCTGCTCGGGCCAGTGG+CGG + chr8_1:21847433-21847452 Msa1185130:intron 75.0%
GATCCGCCACTGGCCCGAGC+AGG - chr8_1:21847439-21847458 None:intergenic 75.0%
! GGGGGGTGCAGTGGCACCTG+GGG + chr8_1:21847765-21847784 Msa1185130:intron 75.0%
! GGGGGTGCAGTGGCACCTGG+GGG + chr8_1:21847766-21847785 Msa1185130:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 21846175 21849064 21846175 ID=Msa1185130;Name=Msa1185130
chr8_1 mRNA 21846175 21849064 21846175 ID=Msa1185130-mRNA-1;Parent=Msa1185130;Name=Msa1185130-mRNA-1;_AED=0.00;_eAED=0.00;_QI=249|1|1|1|1|1|3|94|430
chr8_1 exon 21846175 21847080 21846175 ID=Msa1185130-mRNA-1:exon:8161;Parent=Msa1185130-mRNA-1
chr8_1 exon 21848077 21848179 21848077 ID=Msa1185130-mRNA-1:exon:8162;Parent=Msa1185130-mRNA-1
chr8_1 exon 21848438 21849064 21848438 ID=Msa1185130-mRNA-1:exon:8163;Parent=Msa1185130-mRNA-1
chr8_1 five_prime_UTR 21846175 21846423 21846175 ID=Msa1185130-mRNA-1:five_prime_utr;Parent=Msa1185130-mRNA-1
chr8_1 CDS 21846424 21847080 21846424 ID=Msa1185130-mRNA-1:cds;Parent=Msa1185130-mRNA-1
chr8_1 CDS 21848077 21848179 21848077 ID=Msa1185130-mRNA-1:cds;Parent=Msa1185130-mRNA-1
chr8_1 CDS 21848438 21848970 21848438 ID=Msa1185130-mRNA-1:cds;Parent=Msa1185130-mRNA-1
chr8_1 three_prime_UTR 21848971 21849064 21848971 ID=Msa1185130-mRNA-1:three_prime_utr;Parent=Msa1185130-mRNA-1
Gene Sequence

>Msa1185130

ATGGAGGTGCAACAAAGAAGATTCAACACCATGGAGAGAAGACCAAGAATGTTGAAGGATTTCTTAAGCGAGAATCCAAACTCAAACTCATGTTCTTCAAGTGGATTCAAATCACTTCCAAGAACAACAAAACCAATTACCAACTCCATTCAAATCCACCACTCACATTCATCATCATCATCAAAATTTCAAGCCCTAATAAAAACCATAAAAAACAACGTCACATTCTTCAAAATCACAAAACCACCCTCCACCATCCTCTCACTACCACGAACCTTATCACGCAAGTTATCATCAAAACGAAGAACAAGCCAAAGATGCAAAGGTGAAAGAGAAATCGAAATCGAATCAAGCACGGTGAAAATCAAAGACATCATGCGTTGGAAATCGTTTCGAGATATACAACAACCGTCGACGATTCCATCACCACCGTTATCGCCGTTTGATTTTCGGCGTTTTGTGACGGAATCGTCGACGGTTACTACTGCAACGACATATTGTGGTAGTAGTAGCGACGGTGATTCTAGTTGGAGTGACGGTGATTTTTTTAGTGAGCTGTGGGATGCAGAAAACGACGACGTTGAAGAGAGTGGAAAAAAATTGTTTTCTTCTTTTTTTGTCGGCAAGGATTCGGTGGCATCGTTCGTTGGGGACAAGGATGATTTGACTTGCCAAGATGAACAACAAAGTCCAGTTTCAGTTCTTCGAGTTGCAGAAAATGAATTTTCAATCTTTGACCAAAGCCTTGCCAATATTGAAAGGAGAAAACAAAAATTCAGACAAACTTCTGATAAATTAGAGAGTCATGCAAAATTTGACCTGGTAGCCTTAGATGAATGTCTCTCATTGGATGAGAATTCATACTATGGCGAAGAATATAAAGACGACCATAAGGAAGAGGAGGACCAAAAAACTGAAGAACAAGTTTGGATTGAGGAAAGGGCAAAGCAATTGCTACATATTGTTAAAGCAACAAGTTCATTAGTGCAAAATTGCGACGACAATTTAGATATAGTTCTGCTGGATTTTTTCAAGGAAGAACTAAGTGGTAATAGAAACCAAAAGAGGAATGATGAAGGGTTTGAATTGGAGATAATGAAAATTGCTGAGGATTGGATAAATGAGTCATTTGAAAATGCTTATGATATTGTGCATGTTAATAAAGATGCTTATATCAAAGAAATGGATAGGAGAGGTGTGTGGAGCAGATTTGAGGAGGAGCAAGATGAGATGGTTAAGGAGATTGAGGCAGCTATATTACATAGTTTGATTGATGATATTTTTCACCCCTAA

Protein sequence

>Msa1185130

MEVQQRRFNTMERRPRMLKDFLSENPNSNSCSSSGFKSLPRTTKPITNSIQIHHSHSSSSSKFQALIKTIKNNVTFFKITKPPSTILSLPRTLSRKLSSKRRTSQRCKGEREIEIESSTVKIKDIMRWKSFRDIQQPSTIPSPPLSPFDFRRFVTESSTVTTATTYCGSSSDGDSSWSDGDFFSELWDAENDDVEESGKKLFSSFFVGKDSVASFVGDKDDLTCQDEQQSPVSVLRVAENEFSIFDQSLANIERRKQKFRQTSDKLESHAKFDLVALDECLSLDENSYYGEEYKDDHKEEEDQKTEEQVWIEERAKQLLHIVKATSSLVQNCDDNLDIVLLDFFKEELSGNRNQKRNDEGFELEIMKIAEDWINESFENAYDIVHVNKDAYIKEMDRRGVWSRFEEEQDEMVKEIEAAILHSLIDDIFHP*