Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1185130 | XP_013444953.1 | 91.898 | 432 | 29 | 4 | 1 | 428 | 1 | 430 | 0.0 | 741 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0032370 | Msa1185130 | 0.806221 | 9.140695e-50 | -8.615850e-47 |
Msa0039250 | Msa1185130 | 0.802480 | 5.500562e-49 | -8.615850e-47 |
Msa0069600 | Msa1185130 | 0.823029 | 1.725925e-53 | -8.615850e-47 |
Msa0074750 | Msa1185130 | 0.817021 | 4.092476e-52 | -8.615850e-47 |
Msa0094010 | Msa1185130 | 0.826794 | 2.231392e-54 | -8.615850e-47 |
Msa0101180 | Msa1185130 | 0.809099 | 2.236668e-50 | -8.615850e-47 |
Msa0625790 | Msa1185130 | 0.815136 | 1.078997e-51 | -8.615850e-47 |
Msa0627870 | Msa1185130 | 0.814333 | 1.625560e-51 | -8.615850e-47 |
Msa0642720 | Msa1185130 | 0.812431 | 4.254525e-51 | -8.615850e-47 |
Msa0687230 | Msa1185130 | 0.825404 | 4.776303e-54 | -8.615850e-47 |
Msa0699360 | Msa1185130 | 0.815278 | 1.003206e-51 | -8.615850e-47 |
Msa0707390 | Msa1185130 | 0.818549 | 1.849321e-52 | -8.615850e-47 |
Msa0730900 | Msa1185130 | 0.800845 | 1.190740e-48 | -8.615850e-47 |
Msa0734960 | Msa1185130 | 0.804418 | 2.181329e-49 | -8.615850e-47 |
Msa0743530 | Msa1185130 | 0.802650 | 5.071789e-49 | -8.615850e-47 |
Msa0797750 | Msa1185130 | 0.808041 | 3.763806e-50 | -8.615850e-47 |
Msa0819540 | Msa1185130 | 0.804746 | 1.862674e-49 | -8.615850e-47 |
Msa0822170 | Msa1185130 | 0.803099 | 4.096772e-49 | -8.615850e-47 |
Msa0824640 | Msa1185130 | 0.801396 | 9.183183e-49 | -8.615850e-47 |
Msa0830210 | Msa1185130 | 0.806754 | 7.054442e-50 | -8.615850e-47 |
Msa0394400 | Msa1185130 | 0.808974 | 2.379041e-50 | -8.615850e-47 |
Msa0413450 | Msa1185130 | 0.800386 | 1.476533e-48 | -8.615850e-47 |
Msa0431410 | Msa1185130 | 0.801733 | 7.832956e-49 | -8.615850e-47 |
Msa0431770 | Msa1185130 | 0.836616 | 8.428656e-57 | -8.615850e-47 |
Msa0432070 | Msa1185130 | 0.828302 | 9.693867e-55 | -8.615850e-47 |
Msa0449820 | Msa1185130 | 0.815715 | 8.019229e-52 | -8.615850e-47 |
Msa0986920 | Msa1185130 | 0.807490 | 4.927524e-50 | -8.615850e-47 |
Msa0993530 | Msa1185130 | 0.802173 | 6.360239e-49 | -8.615850e-47 |
Msa1004420 | Msa1185130 | 0.842081 | 3.213883e-58 | -8.615850e-47 |
Msa1005820 | Msa1185130 | 0.808497 | 3.009112e-50 | -8.615850e-47 |
Msa0242760 | Msa1185130 | 0.818689 | 1.719164e-52 | -8.615850e-47 |
Msa0281360 | Msa1185130 | 0.806069 | 9.836737e-50 | -8.615850e-47 |
Msa0310410 | Msa1185130 | 0.806548 | 7.796174e-50 | -8.615850e-47 |
Msa0321170 | Msa1185130 | 0.817458 | 3.263103e-52 | -8.615850e-47 |
Msa0322590 | Msa1185130 | 0.807223 | 5.612844e-50 | -8.615850e-47 |
Msa1113590 | Msa1185130 | 0.805509 | 1.290040e-49 | -8.615850e-47 |
Msa1169720 | Msa1185130 | 0.810823 | 9.517702e-51 | -8.615850e-47 |
Msa1174100 | Msa1185130 | 0.804419 | 2.179978e-49 | -8.615850e-47 |
Msa1182770 | Msa1185130 | 0.803540 | 3.320029e-49 | -8.615850e-47 |
Msa1184370 | Msa1185130 | 0.815492 | 8.991593e-52 | -8.615850e-47 |
Msa1185130 | Msa1188560 | 0.820642 | 6.157316e-53 | -8.615850e-47 |
Msa1185130 | Msa1198530 | 0.804485 | 2.112244e-49 | -8.615850e-47 |
Msa1185130 | Msa1199290 | 0.823485 | 1.350530e-53 | -8.615850e-47 |
Msa1185130 | Msa1201830 | 0.826914 | 2.088451e-54 | -8.615850e-47 |
Msa1185130 | Msa1204850 | 0.807192 | 5.698295e-50 | -8.615850e-47 |
Msa1185130 | Msa1205480 | 0.816226 | 6.167613e-52 | -8.615850e-47 |
Msa1185130 | Msa1224830 | 0.805164 | 1.523743e-49 | -8.615850e-47 |
Msa1185130 | Msa1227690 | 0.817373 | 3.410634e-52 | -8.615850e-47 |
Msa1185130 | Msa1228890 | 0.807163 | 5.779456e-50 | -8.615850e-47 |
Msa1185130 | Msa1280560 | 0.846555 | 2.017819e-59 | -8.615850e-47 |
Msa1185130 | Msa1294840 | 0.826825 | 2.192982e-54 | -8.615850e-47 |
Msa1185130 | Msa1296300 | 0.818231 | 2.183454e-52 | -8.615850e-47 |
Msa1185130 | Msa1299360 | 0.822688 | 2.072477e-53 | -8.615850e-47 |
Msa1185130 | Msa1309130 | 0.837138 | 6.201875e-57 | -8.615850e-47 |
Msa1185130 | Msa1310690 | 0.811365 | 7.260392e-51 | -8.615850e-47 |
Msa1185130 | Msa1365150 | 0.806292 | 8.829012e-50 | -8.615850e-47 |
Msa1185130 | Msa1393800 | 0.809135 | 2.197030e-50 | -8.615850e-47 |
Msa1185130 | Msa1397940 | 0.801824 | 7.503793e-49 | -8.615850e-47 |
Msa1185130 | Msa1431040 | 0.801210 | 1.002414e-48 | -8.615850e-47 |
Msa1185130 | Msa1438450 | 0.804075 | 2.571172e-49 | -8.615850e-47 |
Msa1185130 | Msa1438640 | 0.822157 | 2.753361e-53 | -8.615850e-47 |
Msa1185130 | Msa1466590 | 0.806598 | 7.608973e-50 | -8.615850e-47 |
Msa0505150 | Msa1185130 | 0.804654 | 1.947417e-49 | -8.615850e-47 |
Msa0510290 | Msa1185130 | 0.827050 | 1.937719e-54 | -8.615850e-47 |
Msa0515640 | Msa1185130 | 0.800803 | 1.214211e-48 | -8.615850e-47 |
Msa0518960 | Msa1185130 | 0.802155 | 6.415516e-49 | -8.615850e-47 |
Msa0546300 | Msa1185130 | 0.815163 | 1.064411e-51 | -8.615850e-47 |
Msa0578090 | Msa1185130 | 0.811678 | 6.207197e-51 | -8.615850e-47 |
Msa0588120 | Msa1185130 | 0.810972 | 8.836577e-51 | -8.615850e-47 |
Msa0864010 | Msa1185130 | 0.805391 | 1.365479e-49 | -8.615850e-47 |
Msa0869010 | Msa1185130 | 0.810307 | 1.229880e-50 | -8.615850e-47 |
Msa0963020 | Msa1185130 | 0.807359 | 5.254044e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1185130 | MtrunA17_Chr8g0350771 | 91.898 | 432 | 29 | 4 | 1 | 428 | 1 | 430 | 0.0 | 741 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1185130 | AT4G00770.1 | 33.630 | 449 | 234 | 21 | 11 | 428 | 1 | 416 | 1.37e-37 | 142 |
Msa1185130 | AT4G23020.2 | 25.647 | 464 | 263 | 22 | 14 | 429 | 19 | 448 | 1.49e-11 | 66.6 |
Msa1185130 | AT4G23020.1 | 25.951 | 447 | 256 | 19 | 14 | 429 | 19 | 421 | 3.69e-11 | 65.1 |
Find 83 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTTTCACCTTTGCATCTT+TGG | 0.045094 | 8_1:-21846735 | None:intergenic |
ACCCTTCATCATTCCTCTTT+TGG | 0.168881 | 8_1:-21848736 | None:intergenic |
GTATTTCGGATGTACATATT+TGG | 0.190940 | 8_1:+21848973 | Msa1185130:three_prime_UTR |
AAGAAATCCTTCAACATTCT+TGG | 0.218670 | 8_1:-21846466 | None:intergenic |
TTAAAATATTCACATGATTC+TGG | 0.219032 | 8_1:-21849036 | None:intergenic |
TCTTGGTGACCAATTTAAAA+TGG | 0.239183 | 8_1:-21846222 | None:intergenic |
TTGAAACTTACTTTCAATAT+TGG | 0.240740 | 8_1:-21848168 | None:intergenic |
TTTGGTCCTCCTCTTCCTTA+TGG | 0.262976 | 8_1:-21848565 | None:intergenic |
GAAGAACATGAGTTTGAGTT+TGG | 0.313923 | 8_1:-21846499 | None:intergenic |
GAATGATGAAGGGTTTGAAT+TGG | 0.320393 | 8_1:+21848745 | Msa1185130:CDS |
TAGACTCTTGATAAAGAAAA+AGG | 0.323105 | 8_1:-21846319 | None:intergenic |
TTTCACCCCTAAAAGTATTT+CGG | 0.330567 | 8_1:+21848959 | Msa1185130:exon |
ATTCGGTGGCATCGTTCGTT+GGG | 0.334833 | 8_1:+21847052 | Msa1185130:CDS |
CTATAAATGATGATTGTTCT+TGG | 0.350469 | 8_1:-21846239 | None:intergenic |
CTGGACTTTGTTGTTCATCT+TGG | 0.351202 | 8_1:-21848091 | None:intergenic |
ATTTGAATGGAGTTGGTAAT+TGG | 0.359397 | 8_1:-21846556 | None:intergenic |
GCAACTCGAAGAACTGAAAC+TGG | 0.364596 | 8_1:-21848110 | None:intergenic |
TAATCATAAGTGGTGAATTA+CGG | 0.366999 | 8_1:+21846358 | Msa1185130:five_prime_UTR |
AATCATAAGTGGTGAATTAC+GGG | 0.391168 | 8_1:+21846359 | Msa1185130:five_prime_UTR |
TTGGATGAGAATTCATACTA+TGG | 0.398348 | 8_1:+21848524 | Msa1185130:CDS |
TTTCAATATTGGCAAGGCTT+TGG | 0.404934 | 8_1:-21848157 | None:intergenic |
CAATTTAGATATAGTTCTGC+TGG | 0.415490 | 8_1:+21848679 | Msa1185130:CDS |
GGAGCAAGATGAGATGGTTA+AGG | 0.418517 | 8_1:+21848895 | Msa1185130:CDS |
CAATGAGAGACATTCATCTA+AGG | 0.420733 | 8_1:-21848504 | None:intergenic |
AGATGCTTATATCAAAGAAA+TGG | 0.429049 | 8_1:+21848841 | Msa1185130:CDS |
TGATGATAACTTGCGTGATA+AGG | 0.429555 | 8_1:-21846698 | None:intergenic |
TGAGATGGTTAAGGAGATTG+AGG | 0.445988 | 8_1:+21848904 | Msa1185130:CDS |
GATTCGGTGGCATCGTTCGT+TGG | 0.446796 | 8_1:+21847051 | Msa1185130:CDS |
AGGTGTGTGGAGCAGATTTG+AGG | 0.447311 | 8_1:+21848871 | Msa1185130:CDS |
TGAGGAGGAGCAAGATGAGA+TGG | 0.454037 | 8_1:+21848889 | Msa1185130:CDS |
CATTCTTGGTCTTCTCTCCA+TGG | 0.454188 | 8_1:-21846452 | None:intergenic |
TAATGAAAATTGCTGAGGAT+TGG | 0.457153 | 8_1:+21848771 | Msa1185130:CDS |
CTTGGTGACCAATTTAAAAT+GGG | 0.458170 | 8_1:-21846221 | None:intergenic |
ACAAGTTTGGATTGAGGAAA+GGG | 0.459997 | 8_1:+21848598 | Msa1185130:CDS |
CGAAAATCAAACGGCGATAA+CGG | 0.481908 | 8_1:-21846853 | None:intergenic |
GGCATCGTTCGTTGGGGACA+AGG | 0.488211 | 8_1:+21847059 | Msa1185130:CDS |
AGAATATAAAGACGACCATA+AGG | 0.493844 | 8_1:+21848550 | Msa1185130:CDS |
CTTAGATGAATGTCTCTCAT+TGG | 0.500361 | 8_1:+21848505 | Msa1185130:CDS |
TGGTAGTGAGAGGATGGTGG+AGG | 0.501655 | 8_1:-21846671 | None:intergenic |
TCAAACTCATGTTCTTCAAG+TGG | 0.511370 | 8_1:+21846505 | Msa1185130:CDS |
AGTGAGAGGATGGTGGAGGG+TGG | 0.513983 | 8_1:-21846667 | None:intergenic |
GAGAAGACCAAGAATGTTGA+AGG | 0.515311 | 8_1:+21846459 | Msa1185130:CDS |
AAACTCAACGTAATCATAAG+TGG | 0.515575 | 8_1:+21846348 | Msa1185130:five_prime_UTR |
AACGGCGATAACGGTGGTGA+TGG | 0.516312 | 8_1:-21846844 | None:intergenic |
GGTTCGTGGTAGTGAGAGGA+TGG | 0.528255 | 8_1:-21846677 | None:intergenic |
GTAGCGACGGTGATTCTAGT+TGG | 0.532871 | 8_1:+21846932 | Msa1185130:CDS |
AACCAAAAGAGGAATGATGA+AGG | 0.539948 | 8_1:+21848734 | Msa1185130:CDS |
ACTTACTTTCAATATTGGCA+AGG | 0.540349 | 8_1:-21848163 | None:intergenic |
TCGTGGTAGTGAGAGGATGG+TGG | 0.542013 | 8_1:-21846674 | None:intergenic |
CTTATATCAAAGAAATGGAT+AGG | 0.552563 | 8_1:+21848846 | Msa1185130:CDS |
GACATTCATCTAAGGCTACC+AGG | 0.552902 | 8_1:-21848496 | None:intergenic |
GAATGAAATGATAGAGTTGG+TGG | 0.554740 | 8_1:-21846184 | None:intergenic |
AACAAGTTTGGATTGAGGAA+AGG | 0.558522 | 8_1:+21848597 | Msa1185130:CDS |
ACAAAACGCCGAAAATCAAA+CGG | 0.560310 | 8_1:-21846862 | None:intergenic |
TAAAGACGACCATAAGGAAG+AGG | 0.561640 | 8_1:+21848556 | Msa1185130:CDS |
TGAAGAACAAGTTTGGATTG+AGG | 0.563495 | 8_1:+21848592 | Msa1185130:CDS |
GGTAGTGAGAGGATGGTGGA+GGG | 0.564299 | 8_1:-21846670 | None:intergenic |
ATGTGAGTGGTGGATTTGAA+TGG | 0.564695 | 8_1:-21846569 | None:intergenic |
AACTTGCGTGATAAGGTTCG+TGG | 0.577209 | 8_1:-21846691 | None:intergenic |
GTGGTGGATTTGAATGGAGT+TGG | 0.578257 | 8_1:-21846563 | None:intergenic |
AAATCAAAGACATCATGCGT+TGG | 0.582069 | 8_1:+21846785 | Msa1185130:CDS |
AACGACGACGTTGAAGAGAG+TGG | 0.586326 | 8_1:+21846994 | Msa1185130:CDS |
GGAGATAATGAAAATTGCTG+AGG | 0.589300 | 8_1:+21848766 | Msa1185130:CDS |
TTCGGTGGCATCGTTCGTTG+GGG | 0.603222 | 8_1:+21847053 | Msa1185130:CDS |
ACCAAAAGAGGAATGATGAA+GGG | 0.607849 | 8_1:+21848735 | Msa1185130:CDS |
ATGATGATGAATGTGAGTGG+TGG | 0.609047 | 8_1:-21846579 | None:intergenic |
AATGAATGAAATGATAGAGT+TGG | 0.610196 | 8_1:-21846187 | None:intergenic |
GTGGTAATAGAAACCAAAAG+AGG | 0.610527 | 8_1:+21848723 | Msa1185130:CDS |
AAATGGATAGGAGAGGTGTG+TGG | 0.614524 | 8_1:+21848858 | Msa1185130:CDS |
ACTACTGCAACGACATATTG+TGG | 0.623891 | 8_1:+21846904 | Msa1185130:CDS |
AGAACAAGCCAAAGATGCAA+AGG | 0.624593 | 8_1:+21846727 | Msa1185130:CDS |
ATAAGGTTCGTGGTAGTGAG+AGG | 0.628338 | 8_1:-21846681 | None:intergenic |
AAATCAAACGGCGATAACGG+TGG | 0.633790 | 8_1:-21846850 | None:intergenic |
AGACGACCATAAGGAAGAGG+AGG | 0.638078 | 8_1:+21848559 | Msa1185130:CDS |
TGTGTGGAGCAGATTTGAGG+AGG | 0.647051 | 8_1:+21848874 | Msa1185130:CDS |
ATCAAAGAAATGGATAGGAG+AGG | 0.647321 | 8_1:+21848851 | Msa1185130:CDS |
GAGTCATGCAAAATTTGACC+TGG | 0.658494 | 8_1:+21848478 | Msa1185130:CDS |
GGTGGTGATGGAATCGTCGA+CGG | 0.664900 | 8_1:-21846832 | None:intergenic |
TATTGTGGTAGTAGTAGCGA+CGG | 0.672651 | 8_1:+21846919 | Msa1185130:CDS |
GGTGATTCTAGTTGGAGTGA+CGG | 0.678139 | 8_1:+21846940 | Msa1185130:CDS |
AATCGAAATCGAATCAAGCA+CGG | 0.679656 | 8_1:+21846759 | Msa1185130:CDS |
ACAAAGAAGATTCAACACCA+TGG | 0.680203 | 8_1:+21846435 | Msa1185130:CDS |
ATGATGATGATGAATGTGAG+TGG | 0.689123 | 8_1:-21846582 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATATTAAAGAAATAATGA+TGG | + | chr8_1:21847332-21847351 | Msa1185130:intron | 10.0% |
!!! | TACTTTTTTTTTTTTTTTGT+CGG | + | chr8_1:21847400-21847419 | Msa1185130:intron | 10.0% |
!! | CTATATATTCTATAAATATT+TGG | - | chr8_1:21847484-21847503 | None:intergenic | 10.0% |
!! | TATGATATTTATATAAAGTT+TGG | + | chr8_1:21847744-21847763 | Msa1185130:intron | 10.0% |
!! | ATGATATTTATATAAAGTTT+GGG | + | chr8_1:21847745-21847764 | Msa1185130:intron | 10.0% |
!! | TCATAAAACAAAATAATTTA+TGG | + | chr8_1:21847873-21847892 | Msa1185130:intron | 10.0% |
!!! | ATGTTATTTTTTTTTTTTTG+AGG | + | chr8_1:21847969-21847988 | Msa1185130:intron | 10.0% |
!!! | TGTTATTTTTTTTTTTTTGA+GGG | + | chr8_1:21847970-21847989 | Msa1185130:intron | 10.0% |
!!! | GTTTTTTATGGTTTTTATTA+GGG | - | chr8_1:21846620-21846639 | None:intergenic | 15.0% |
!!! | TGTTTTTTATGGTTTTTATT+AGG | - | chr8_1:21846621-21846640 | None:intergenic | 15.0% |
!! | TTCTTTATAGAAAAAAACAA+TGG | + | chr8_1:21847135-21847154 | Msa1185130:intron | 15.0% |
!! | AATATTCTATCATATTCTAT+TGG | - | chr8_1:21847197-21847216 | None:intergenic | 15.0% |
!! | TAGAATATGATAGAATATTA+TGG | + | chr8_1:21847198-21847217 | Msa1185130:intron | 15.0% |
!! | AAATAATCAATGTTATAAAC+TGG | + | chr8_1:21847518-21847537 | Msa1185130:intron | 15.0% |
!! | TTGTCAAAAAATATAAAAAG+AGG | + | chr8_1:21847629-21847648 | Msa1185130:intron | 15.0% |
!! | TGTCAAAAAATATAAAAAGA+GGG | + | chr8_1:21847630-21847649 | Msa1185130:intron | 15.0% |
!! | TGATATTTATATAAAGTTTG+GGG | + | chr8_1:21847746-21847765 | Msa1185130:intron | 15.0% |
!!! | TTTGTGTTACTAATAATTTA+TGG | + | chr8_1:21847843-21847862 | Msa1185130:intron | 15.0% |
!!! | AATTAGTAATTTTGCAAAAT+TGG | + | chr8_1:21848228-21848247 | Msa1185130:intron | 15.0% |
!! | AGAGTTAAATAGTTAAATAT+TGG | - | chr8_1:21848273-21848292 | None:intergenic | 15.0% |
!! | AAATTGTTAAATTTCTTGAT+TGG | - | chr8_1:21848300-21848319 | None:intergenic | 15.0% |
!!! | TAGACATTTCTTTTTGAAAA+TGG | + | chr8_1:21846405-21846424 | Msa1185130:exon | 20.0% |
!!! | TTGTTTTCTTCTTTTTTTGT+CGG | + | chr8_1:21847024-21847043 | Msa1185130:CDS | 20.0% |
!! | AACTATAGTGCATAAAATAT+AGG | - | chr8_1:21847163-21847182 | None:intergenic | 20.0% |
!!! | AAACTACTATTGTCTTTTTT+TGG | - | chr8_1:21847380-21847399 | None:intergenic | 20.0% |
!!! | TTTTTTTTTTTTTTTGTCGG+TGG | + | chr8_1:21847403-21847422 | Msa1185130:intron | 20.0% |
!!! | TTTTTTTTTTTTTTGTCGGT+GGG | + | chr8_1:21847404-21847423 | Msa1185130:intron | 20.0% |
!!! | CATATTTTATACCAAAAAAG+TGG | - | chr8_1:21847603-21847622 | None:intergenic | 20.0% |
!! | TAATATAACAACTTATATGC+TGG | - | chr8_1:21847717-21847736 | None:intergenic | 20.0% |
!! | GATATTTATATAAAGTTTGG+GGG | + | chr8_1:21847747-21847766 | Msa1185130:intron | 20.0% |
!! | ATATTTATATAAAGTTTGGG+GGG | + | chr8_1:21847748-21847767 | Msa1185130:intron | 20.0% |
!! | TTGAAACTTACTTTCAATAT+TGG | - | chr8_1:21848171-21848190 | None:intergenic | 20.0% |
!! | AGAAATTTAACAATTTGAGT+TGG | + | chr8_1:21848304-21848323 | Msa1185130:intron | 20.0% |
!!! | TACCAATAATGTTTGATTTT+TGG | + | chr8_1:21848410-21848429 | Msa1185130:intron | 20.0% |
!! | TTCCAAAAATCAAACATTAT+TGG | - | chr8_1:21848415-21848434 | None:intergenic | 20.0% |
!! | TTAAAATATTCACATGATTC+TGG | - | chr8_1:21849039-21849058 | None:intergenic | 20.0% |
! | AATGAATGAAATGATAGAGT+TGG | - | chr8_1:21846190-21846209 | None:intergenic | 25.0% |
! | CTATAAATGATGATTGTTCT+TGG | - | chr8_1:21846242-21846261 | None:intergenic | 25.0% |
!! | CGATTCTTTTGTAATAACAA+TGG | - | chr8_1:21846277-21846296 | None:intergenic | 25.0% |
! | TAGACTCTTGATAAAGAAAA+AGG | - | chr8_1:21846322-21846341 | None:intergenic | 25.0% |
! | TAATCATAAGTGGTGAATTA+CGG | + | chr8_1:21846358-21846377 | Msa1185130:five_prime_UTR | 25.0% |
!!! | ACATTTCTTTTTGAAAATGG+AGG | + | chr8_1:21846408-21846427 | Msa1185130:exon | 25.0% |
! | AAATTACTAATTCTGTAGGT+TGG | - | chr8_1:21848220-21848239 | None:intergenic | 25.0% |
! | TGCAAAATTACTAATTCTGT+AGG | - | chr8_1:21848224-21848243 | None:intergenic | 25.0% |
!!! | TAATGTTTGATTTTTGGAAC+AGG | + | chr8_1:21848416-21848435 | Msa1185130:intron | 25.0% |
!!! | AATGTTTGATTTTTGGAACA+GGG | + | chr8_1:21848417-21848436 | Msa1185130:intron | 25.0% |
!!! | AAACTTGTTCTTCAGTTTTT+TGG | - | chr8_1:21848586-21848605 | None:intergenic | 25.0% |
! | AAAAAACTGAAGAACAAGTT+TGG | + | chr8_1:21848585-21848604 | Msa1185130:CDS | 25.0% |
! | AGATGCTTATATCAAAGAAA+TGG | + | chr8_1:21848841-21848860 | Msa1185130:CDS | 25.0% |
! | CTTATATCAAAGAAATGGAT+AGG | + | chr8_1:21848846-21848865 | Msa1185130:CDS | 25.0% |
! | TTTCGTCACCCATTTTAAAT+TGG | + | chr8_1:21846213-21846232 | Msa1185130:five_prime_UTR | 30.0% |
! | CTTGGTGACCAATTTAAAAT+GGG | - | chr8_1:21846224-21846243 | None:intergenic | 30.0% |
! | TCTTGGTGACCAATTTAAAA+TGG | - | chr8_1:21846225-21846244 | None:intergenic | 30.0% |
ACTCTTGATAAAGAAAAAGG+TGG | - | chr8_1:21846319-21846338 | None:intergenic | 30.0% | |
AAACTCAACGTAATCATAAG+TGG | + | chr8_1:21846348-21846367 | Msa1185130:five_prime_UTR | 30.0% | |
AATCATAAGTGGTGAATTAC+GGG | + | chr8_1:21846359-21846378 | Msa1185130:five_prime_UTR | 30.0% | |
AAGAAATCCTTCAACATTCT+TGG | - | chr8_1:21846469-21846488 | None:intergenic | 30.0% | |
!!! | GTAATTGGTTTTGTTGTTCT+TGG | - | chr8_1:21846544-21846563 | None:intergenic | 30.0% |
!! | ATTTGAATGGAGTTGGTAAT+TGG | - | chr8_1:21846559-21846578 | None:intergenic | 30.0% |
!!! | GAATGTGACGTTGTTTTTTA+TGG | - | chr8_1:21846632-21846651 | None:intergenic | 30.0% |
!!! | TGATTTTTTTAGTGAGCTGT+GGG | + | chr8_1:21846963-21846982 | Msa1185130:CDS | 30.0% |
CGGATCTTGAGTTTATTTAT+CGG | + | chr8_1:21847453-21847472 | Msa1185130:intron | 30.0% | |
GGATCTTGAGTTTATTTATC+GGG | + | chr8_1:21847454-21847473 | Msa1185130:intron | 30.0% | |
GATCTTGAGTTTATTTATCG+GGG | + | chr8_1:21847455-21847474 | Msa1185130:intron | 30.0% | |
ATCTTGAGTTTATTTATCGG+GGG | + | chr8_1:21847456-21847475 | Msa1185130:intron | 30.0% | |
AATGTTATAAACTGGTGTGA+TGG | + | chr8_1:21847526-21847545 | Msa1185130:intron | 30.0% | |
AAGTGAATAATTGTGACATG+AGG | + | chr8_1:21847552-21847571 | Msa1185130:intron | 30.0% | |
AGTGAATAATTGTGACATGA+GGG | + | chr8_1:21847553-21847572 | Msa1185130:intron | 30.0% | |
! | TAACATCTAACGTTGCTATT+AGG | + | chr8_1:21848012-21848031 | Msa1185130:intron | 30.0% |
ACTTACTTTCAATATTGGCA+AGG | - | chr8_1:21848166-21848185 | None:intergenic | 30.0% | |
GTCTAATAATGCATAACACA+TGG | - | chr8_1:21848198-21848217 | None:intergenic | 30.0% | |
TTGGATGAGAATTCATACTA+TGG | + | chr8_1:21848524-21848543 | Msa1185130:CDS | 30.0% | |
AGAATATAAAGACGACCATA+AGG | + | chr8_1:21848550-21848569 | Msa1185130:CDS | 30.0% | |
! | CAATTTAGATATAGTTCTGC+TGG | + | chr8_1:21848679-21848698 | Msa1185130:CDS | 30.0% |
!!! | TTTTTCAAGGAAGAACTAAG+TGG | + | chr8_1:21848704-21848723 | Msa1185130:CDS | 30.0% |
TAATGAAAATTGCTGAGGAT+TGG | + | chr8_1:21848771-21848790 | Msa1185130:CDS | 30.0% | |
!! | TTTCACCCCTAAAAGTATTT+CGG | + | chr8_1:21848959-21848978 | Msa1185130:exon | 30.0% |
! | TACATCCGAAATACTTTTAG+GGG | - | chr8_1:21848967-21848986 | None:intergenic | 30.0% |
! | GTACATCCGAAATACTTTTA+GGG | - | chr8_1:21848968-21848987 | None:intergenic | 30.0% |
! | TGTACATCCGAAATACTTTT+AGG | - | chr8_1:21848969-21848988 | None:intergenic | 30.0% |
GTATTTCGGATGTACATATT+TGG | + | chr8_1:21848973-21848992 | Msa1185130:three_prime_UTR | 30.0% | |
GAATGAAATGATAGAGTTGG+TGG | - | chr8_1:21846187-21846206 | None:intergenic | 35.0% | |
ACAAAGAAGATTCAACACCA+TGG | + | chr8_1:21846435-21846454 | Msa1185130:CDS | 35.0% | |
! | GAAGAACATGAGTTTGAGTT+TGG | - | chr8_1:21846502-21846521 | None:intergenic | 35.0% |
TCAAACTCATGTTCTTCAAG+TGG | + | chr8_1:21846505-21846524 | Msa1185130:CDS | 35.0% | |
! | ATGATGATGATGAATGTGAG+TGG | - | chr8_1:21846585-21846604 | None:intergenic | 35.0% |
! | TGATGATAACTTGCGTGATA+AGG | - | chr8_1:21846701-21846720 | None:intergenic | 35.0% |
AATCGAAATCGAATCAAGCA+CGG | + | chr8_1:21846759-21846778 | Msa1185130:CDS | 35.0% | |
AAATCAAAGACATCATGCGT+TGG | + | chr8_1:21846785-21846804 | Msa1185130:CDS | 35.0% | |
ACAAAACGCCGAAAATCAAA+CGG | - | chr8_1:21846865-21846884 | None:intergenic | 35.0% | |
!!! | GTGATTTTTTTAGTGAGCTG+TGG | + | chr8_1:21846962-21846981 | Msa1185130:CDS | 35.0% |
!!! | TTCTTCTTTTTTTGTCGGCA+AGG | + | chr8_1:21847029-21847048 | Msa1185130:CDS | 35.0% |
!!! | TTTTTTTGTCGGCAAGGATT+CGG | + | chr8_1:21847035-21847054 | Msa1185130:CDS | 35.0% |
!!! | TTTTTTTTTTTGTCGGTGGG+AGG | + | chr8_1:21847407-21847426 | Msa1185130:intron | 35.0% |
!! | AATATAAAAAGAGGGTGCCA+TGG | + | chr8_1:21847638-21847657 | Msa1185130:intron | 35.0% |
!! | ATATAAAAAGAGGGTGCCAT+GGG | + | chr8_1:21847639-21847658 | Msa1185130:intron | 35.0% |
TCTGTCTGTATATCAGTAGA+AGG | - | chr8_1:21847679-21847698 | None:intergenic | 35.0% | |
AACCTGTATGTAATCTTGAC+AGG | + | chr8_1:21848055-21848074 | Msa1185130:intron | 35.0% | |
ATCCTGTCAAGATTACATAC+AGG | - | chr8_1:21848060-21848079 | None:intergenic | 35.0% | |
TTTCAATATTGGCAAGGCTT+TGG | - | chr8_1:21848160-21848179 | None:intergenic | 35.0% | |
CAATGAGAGACATTCATCTA+AGG | - | chr8_1:21848507-21848526 | None:intergenic | 35.0% | |
CTTAGATGAATGTCTCTCAT+TGG | + | chr8_1:21848505-21848524 | Msa1185130:CDS | 35.0% | |
TGAAGAACAAGTTTGGATTG+AGG | + | chr8_1:21848592-21848611 | Msa1185130:CDS | 35.0% | |
AACAAGTTTGGATTGAGGAA+AGG | + | chr8_1:21848597-21848616 | Msa1185130:CDS | 35.0% | |
ACAAGTTTGGATTGAGGAAA+GGG | + | chr8_1:21848598-21848617 | Msa1185130:CDS | 35.0% | |
!!! | AGTTCTGCTGGATTTTTTCA+AGG | + | chr8_1:21848691-21848710 | Msa1185130:CDS | 35.0% |
GTGGTAATAGAAACCAAAAG+AGG | + | chr8_1:21848723-21848742 | Msa1185130:CDS | 35.0% | |
AACCAAAAGAGGAATGATGA+AGG | + | chr8_1:21848734-21848753 | Msa1185130:CDS | 35.0% | |
ACCAAAAGAGGAATGATGAA+GGG | + | chr8_1:21848735-21848754 | Msa1185130:CDS | 35.0% | |
GAATGATGAAGGGTTTGAAT+TGG | + | chr8_1:21848745-21848764 | Msa1185130:CDS | 35.0% | |
GGAGATAATGAAAATTGCTG+AGG | + | chr8_1:21848766-21848785 | Msa1185130:CDS | 35.0% | |
ATCAAAGAAATGGATAGGAG+AGG | + | chr8_1:21848851-21848870 | Msa1185130:CDS | 35.0% | |
GAGAAGACCAAGAATGTTGA+AGG | + | chr8_1:21846459-21846478 | Msa1185130:CDS | 40.0% | |
!! | ATGTGAGTGGTGGATTTGAA+TGG | - | chr8_1:21846572-21846591 | None:intergenic | 40.0% |
! | ATGATGATGAATGTGAGTGG+TGG | - | chr8_1:21846582-21846601 | None:intergenic | 40.0% |
AGAACAAGCCAAAGATGCAA+AGG | + | chr8_1:21846727-21846746 | Msa1185130:CDS | 40.0% | |
CTCTTTCACCTTTGCATCTT+TGG | - | chr8_1:21846738-21846757 | None:intergenic | 40.0% | |
CGAAAATCAAACGGCGATAA+CGG | - | chr8_1:21846856-21846875 | None:intergenic | 40.0% | |
!! | CGTTATCGCCGTTTGATTTT+CGG | + | chr8_1:21846854-21846873 | Msa1185130:CDS | 40.0% |
! | TGATTTTCGGCGTTTTGTGA+CGG | + | chr8_1:21846867-21846886 | Msa1185130:CDS | 40.0% |
ACTACTGCAACGACATATTG+TGG | + | chr8_1:21846904-21846923 | Msa1185130:CDS | 40.0% | |
TATTGTGGTAGTAGTAGCGA+CGG | + | chr8_1:21846919-21846938 | Msa1185130:CDS | 40.0% | |
!! | TATAAAAAGAGGGTGCCATG+GGG | + | chr8_1:21847640-21847659 | Msa1185130:intron | 40.0% |
! | CAACTTATATGCTGGTGTTG+CGG | - | chr8_1:21847709-21847728 | None:intergenic | 40.0% |
!! | CTGGACTTTGTTGTTCATCT+TGG | - | chr8_1:21848094-21848113 | None:intergenic | 40.0% |
GAGTCATGCAAAATTTGACC+TGG | + | chr8_1:21848478-21848497 | Msa1185130:CDS | 40.0% | |
TAAAGACGACCATAAGGAAG+AGG | + | chr8_1:21848556-21848575 | Msa1185130:CDS | 40.0% | |
! | ACCCTTCATCATTCCTCTTT+TGG | - | chr8_1:21848739-21848758 | None:intergenic | 40.0% |
TGAGATGGTTAAGGAGATTG+AGG | + | chr8_1:21848904-21848923 | Msa1185130:CDS | 40.0% | |
!! | AACGCAGTTTTTGTGCTGTT+TGG | + | chr8_1:21849003-21849022 | Msa1185130:three_prime_UTR | 40.0% |
! | CATTCTTGGTCTTCTCTCCA+TGG | - | chr8_1:21846455-21846474 | None:intergenic | 45.0% |
!! | GTGGTGGATTTGAATGGAGT+TGG | - | chr8_1:21846566-21846585 | None:intergenic | 45.0% |
! | ATAAGGTTCGTGGTAGTGAG+AGG | - | chr8_1:21846684-21846703 | None:intergenic | 45.0% |
AACTTGCGTGATAAGGTTCG+TGG | - | chr8_1:21846694-21846713 | None:intergenic | 45.0% | |
! | AAATCAAACGGCGATAACGG+TGG | - | chr8_1:21846853-21846872 | None:intergenic | 45.0% |
!! | TTTTGTGACGGAATCGTCGA+CGG | + | chr8_1:21846879-21846898 | Msa1185130:CDS | 45.0% |
! | GGTGATTCTAGTTGGAGTGA+CGG | + | chr8_1:21846940-21846959 | Msa1185130:CDS | 45.0% |
ATAAACTCAAGATCCGCCAC+TGG | - | chr8_1:21847449-21847468 | None:intergenic | 45.0% | |
AATTGTGACATGAGGGACAC+CGG | + | chr8_1:21847560-21847579 | Msa1185130:intron | 45.0% | |
ACCAAAAAAGTGGACCCAGT+GGG | - | chr8_1:21847593-21847612 | None:intergenic | 45.0% | |
TACCAAAAAAGTGGACCCAG+TGG | - | chr8_1:21847594-21847613 | None:intergenic | 45.0% | |
GCAACTCGAAGAACTGAAAC+TGG | - | chr8_1:21848113-21848132 | None:intergenic | 45.0% | |
! | GACATTCATCTAAGGCTACC+AGG | - | chr8_1:21848499-21848518 | None:intergenic | 45.0% |
TTTGGTCCTCCTCTTCCTTA+TGG | - | chr8_1:21848568-21848587 | None:intergenic | 45.0% | |
! | AAATGGATAGGAGAGGTGTG+TGG | + | chr8_1:21848858-21848877 | Msa1185130:CDS | 45.0% |
GGAGCAAGATGAGATGGTTA+AGG | + | chr8_1:21848895-21848914 | Msa1185130:CDS | 45.0% | |
!! | TATTTAATTAAATTAAGTAT+AGG | + | chr8_1:21847224-21847243 | Msa1185130:intron | 5.0% |
GTAGCGACGGTGATTCTAGT+TGG | + | chr8_1:21846932-21846951 | Msa1185130:CDS | 50.0% | |
AACGACGACGTTGAAGAGAG+TGG | + | chr8_1:21846994-21847013 | Msa1185130:CDS | 50.0% | |
! | TTTTGTCGGCAAGGATTCGG+TGG | + | chr8_1:21847038-21847057 | Msa1185130:CDS | 50.0% |
! | ATTCGGTGGCATCGTTCGTT+GGG | + | chr8_1:21847052-21847071 | Msa1185130:CDS | 50.0% |
CCAAAAAAGTGGACCCAGTG+GGG | - | chr8_1:21847592-21847611 | None:intergenic | 50.0% | |
!! | CTTATATGCTGGTGTTGCGG+CGG | - | chr8_1:21847706-21847725 | None:intergenic | 50.0% |
! | ATAAAGTTTGGGGGGTGCAG+TGG | + | chr8_1:21847756-21847775 | Msa1185130:intron | 50.0% |
AGACGACCATAAGGAAGAGG+AGG | + | chr8_1:21848559-21848578 | Msa1185130:CDS | 50.0% | |
AGGTGTGTGGAGCAGATTTG+AGG | + | chr8_1:21848871-21848890 | Msa1185130:CDS | 50.0% | |
TGTGTGGAGCAGATTTGAGG+AGG | + | chr8_1:21848874-21848893 | Msa1185130:CDS | 50.0% | |
TGAGGAGGAGCAAGATGAGA+TGG | + | chr8_1:21848889-21848908 | Msa1185130:CDS | 50.0% | |
!! | GGTAGTGAGAGGATGGTGGA+GGG | - | chr8_1:21846673-21846692 | None:intergenic | 55.0% |
! | TGGTAGTGAGAGGATGGTGG+AGG | - | chr8_1:21846674-21846693 | None:intergenic | 55.0% |
! | TCGTGGTAGTGAGAGGATGG+TGG | - | chr8_1:21846677-21846696 | None:intergenic | 55.0% |
! | GGTTCGTGGTAGTGAGAGGA+TGG | - | chr8_1:21846680-21846699 | None:intergenic | 55.0% |
!! | GGTGGTGATGGAATCGTCGA+CGG | - | chr8_1:21846835-21846854 | None:intergenic | 55.0% |
! | AACGGCGATAACGGTGGTGA+TGG | - | chr8_1:21846847-21846866 | None:intergenic | 55.0% |
!! | GATTCGGTGGCATCGTTCGT+TGG | + | chr8_1:21847051-21847070 | Msa1185130:CDS | 55.0% |
TTCGGTGGCATCGTTCGTTG+GGG | + | chr8_1:21847053-21847072 | Msa1185130:CDS | 55.0% | |
!! | ACACCGGTTCAAACCCCACT+GGG | + | chr8_1:21847576-21847595 | Msa1185130:intron | 55.0% |
!!! | CCCCACTGGGTCCACTTTTT+TGG | + | chr8_1:21847589-21847608 | Msa1185130:intron | 55.0% |
! | GGATCTCTTTAGAGACCCCC+AGG | - | chr8_1:21847784-21847803 | None:intergenic | 55.0% |
! | TCTCTAAAGAGATCCGCCCC+TGG | + | chr8_1:21847789-21847808 | Msa1185130:intron | 55.0% |
TATACAACTGCCCGAGCCAG+GGG | - | chr8_1:21847808-21847827 | None:intergenic | 55.0% | |
CTATACAACTGCCCGAGCCA+GGG | - | chr8_1:21847809-21847828 | None:intergenic | 55.0% | |
TCTATACAACTGCCCGAGCC+AGG | - | chr8_1:21847810-21847829 | None:intergenic | 55.0% | |
!! | AGTGAGAGGATGGTGGAGGG+TGG | - | chr8_1:21846670-21846689 | None:intergenic | 60.0% |
GGCATCGTTCGTTGGGGACA+AGG | + | chr8_1:21847059-21847078 | Msa1185130:CDS | 60.0% | |
!! | GACACCGGTTCAAACCCCAC+TGG | + | chr8_1:21847575-21847594 | Msa1185130:intron | 60.0% |
GGACCCAGTGGGGTTTGAAC+CGG | - | chr8_1:21847582-21847601 | None:intergenic | 60.0% | |
AAAGAGATCCGCCCCTGGCT+CGG | + | chr8_1:21847794-21847813 | Msa1185130:intron | 60.0% | |
GTGGGAGGTTGCTGCCTGCT+CGG | + | chr8_1:21847422-21847441 | Msa1185130:intron | 65.0% | |
TGGGAGGTTGCTGCCTGCTC+GGG | + | chr8_1:21847423-21847442 | Msa1185130:intron | 65.0% | |
GGTCGCGTGTTCGAACCCCA+TGG | - | chr8_1:21847658-21847677 | None:intergenic | 65.0% | |
AAGAGATCCGCCCCTGGCTC+GGG | + | chr8_1:21847795-21847814 | Msa1185130:intron | 65.0% | |
TTGCTGCCTGCTCGGGCCAG+TGG | + | chr8_1:21847430-21847449 | Msa1185130:intron | 70.0% | |
! | TTGGGGGGTGCAGTGGCACC+TGG | + | chr8_1:21847763-21847782 | Msa1185130:intron | 70.0% |
! | TGGGGGGTGCAGTGGCACCT+GGG | + | chr8_1:21847764-21847783 | Msa1185130:intron | 70.0% |
ACAACTGCCCGAGCCAGGGG+CGG | - | chr8_1:21847805-21847824 | None:intergenic | 70.0% | |
CTGCCTGCTCGGGCCAGTGG+CGG | + | chr8_1:21847433-21847452 | Msa1185130:intron | 75.0% | |
GATCCGCCACTGGCCCGAGC+AGG | - | chr8_1:21847439-21847458 | None:intergenic | 75.0% | |
! | GGGGGGTGCAGTGGCACCTG+GGG | + | chr8_1:21847765-21847784 | Msa1185130:intron | 75.0% |
! | GGGGGTGCAGTGGCACCTGG+GGG | + | chr8_1:21847766-21847785 | Msa1185130:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 21846175 | 21849064 | 21846175 | ID=Msa1185130;Name=Msa1185130 |
chr8_1 | mRNA | 21846175 | 21849064 | 21846175 | ID=Msa1185130-mRNA-1;Parent=Msa1185130;Name=Msa1185130-mRNA-1;_AED=0.00;_eAED=0.00;_QI=249|1|1|1|1|1|3|94|430 |
chr8_1 | exon | 21846175 | 21847080 | 21846175 | ID=Msa1185130-mRNA-1:exon:8161;Parent=Msa1185130-mRNA-1 |
chr8_1 | exon | 21848077 | 21848179 | 21848077 | ID=Msa1185130-mRNA-1:exon:8162;Parent=Msa1185130-mRNA-1 |
chr8_1 | exon | 21848438 | 21849064 | 21848438 | ID=Msa1185130-mRNA-1:exon:8163;Parent=Msa1185130-mRNA-1 |
chr8_1 | five_prime_UTR | 21846175 | 21846423 | 21846175 | ID=Msa1185130-mRNA-1:five_prime_utr;Parent=Msa1185130-mRNA-1 |
chr8_1 | CDS | 21846424 | 21847080 | 21846424 | ID=Msa1185130-mRNA-1:cds;Parent=Msa1185130-mRNA-1 |
chr8_1 | CDS | 21848077 | 21848179 | 21848077 | ID=Msa1185130-mRNA-1:cds;Parent=Msa1185130-mRNA-1 |
chr8_1 | CDS | 21848438 | 21848970 | 21848438 | ID=Msa1185130-mRNA-1:cds;Parent=Msa1185130-mRNA-1 |
chr8_1 | three_prime_UTR | 21848971 | 21849064 | 21848971 | ID=Msa1185130-mRNA-1:three_prime_utr;Parent=Msa1185130-mRNA-1 |
Gene Sequence |
Protein sequence |