AlfalfaGEDB | Msa0743130

M. sativa cultivar zhongmu-4 / Msa0743130

KEGG: K12199
GO: GO:0000003 GO:0002376 GO:0002831 GO:0002833 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009791 GO:0009814 GO:0009845 GO:0010154 GO:0012505 GO:0016192 GO:0022414 GO:0031347 GO:0031349 GO:0031410 GO:0031982 GO:0032101 GO:0032103 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046983 GO:0048316 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0061458 GO:0065007 GO:0080001 GO:0080134 GO:0090351 GO:0097708 GO:0098542 GO:1900424 GO:1900426 GO:1903335
PFAM: PF04652.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0743130	XP_003617645.1	97.336	488	12	1	1	488	1	487	0.0	948

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0743130	sp\|Q9SZ15\|LIP5_ARATH	48.185	496	163	14	4	487	5	418	3.16e-115	348

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0743130	G7K8Q1	97.336	488	12	1	1	488	1	487	0.0	948

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0032840	Msa0743130	0.825284	5.096833e-54	-8.615850e-47
Msa0114540	Msa0743130	0.814254	1.691825e-51	-8.615850e-47
Msa0138820	Msa0743130	0.806745	7.085194e-50	-8.615850e-47
Msa0196130	Msa0743130	0.835078	2.068745e-56	-8.615850e-47
Msa0215320	Msa0743130	0.829399	5.261099e-55	-8.615850e-47
Msa0230550	Msa0743130	0.809968	1.455488e-50	-8.615850e-47
Msa0238070	Msa0743130	0.820383	7.062897e-53	-8.615850e-47
Msa0294560	Msa0743130	0.880367	5.820932e-70	-8.615850e-47
Msa0336040	Msa0743130	0.800025	1.749140e-48	-8.615850e-47
Msa0436280	Msa0743130	0.834574	2.770311e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0743130	MtrunA17_Chr5g0444891	97.336	488	12	1	1	488	1	487	0.0	948

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0743130	AT4G26750.1	48.185	496	163	14	4	487	5	418	3.21e-116	348

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Find 169 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGGTACTGGTATGAA+TGG	0.527893	5_1:+63256147	Msa0743130:three_prime_UTR
AAACTTCTGCTTCTGGTGCT+GGG	0.497466	5_1:+63255204	Msa0743130:CDS
AAAGCTGCAAGATTTGCTGT+TGG	0.523329	5_1:+63256025	Msa0743130:CDS
AAATCTTACTGGCCAACTGA+TGG	0.501251	5_1:-63256118	None:intergenic
AAATGGGGAAGAGAGTAAGG+AGG	0.630859	5_1:-63255758	None:intergenic
AACAGTTCCAGCAGCAGAAA+AGG	0.463781	5_1:+63255914	Msa0743130:CDS
AACTTGGATAAGATTGAAAA+TGG	0.218480	5_1:-63255775	None:intergenic
AAGAAGGGCATTGGTAGTTT+TGG	0.293479	5_1:-63253199	None:intergenic
AAGATTTGCTGTTGGGGCAC+TGG	0.399437	5_1:+63256033	Msa0743130:CDS
AAGCTGCAAGATTTGCTGTT+GGG	0.416451	5_1:+63256026	Msa0743130:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTCATGAGAGAAACAAGAA+GGG	-	chr5_1:63253217-63253236	None:intergenic	30.0%
CATTCATGCACAATAACTTT+GGG	-	chr5_1:63253341-63253360	None:intergenic	30.0%
CATTCATGTTGTTGCTATAT+TGG	+	chr5_1:63253787-63253806	Msa0743130:intron	30.0%
TCATTTGATCTTCATCCTTA+AGG	-	chr5_1:63253814-63253833	None:intergenic	30.0%
AACATCAAAATTCAAGCATG+AGG	-	chr5_1:63254106-63254125	None:intergenic	30.0%
TCACTTGAAAACAATTTCAG+TGG	+	chr5_1:63254167-63254186	Msa0743130:intron	30.0%
TTGTTAAATAGCAGCTATAG+CGG	+	chr5_1:63254480-63254499	Msa0743130:intron	30.0%
GCTAAAATGTTGTCAAATAG+CGG	+	chr5_1:63254541-63254560	Msa0743130:intron	30.0%
CTAAAATGTTGTCAAATAGC+GGG	+	chr5_1:63254542-63254561	Msa0743130:intron	30.0%
CTTCTATCACATAACTTTCT+TGG	+	chr5_1:63254631-63254650	Msa0743130:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	63252902	63256351	63252902	ID=Msa0743130;Name=Msa0743130
chr5_1	mRNA	63252902	63256351	63252902	ID=Msa0743130-mRNA-1;Parent=Msa0743130;Name=Msa0743130-mRNA-1;_AED=0.05;_eAED=0.05;_QI=65\|1\|1\|1\|0.83\|0.71\|7\|191\|488
chr5_1	exon	63252902	63253057	63252902	ID=Msa0743130-mRNA-1:exon:18611;Parent=Msa0743130-mRNA-1
chr5_1	exon	63253148	63253248	63253148	ID=Msa0743130-mRNA-1:exon:18612;Parent=Msa0743130-mRNA-1
chr5_1	exon	63254282	63254391	63254282	ID=Msa0743130-mRNA-1:exon:18613;Parent=Msa0743130-mRNA-1
chr5_1	exon	63254715	63254790	63254715	ID=Msa0743130-mRNA-1:exon:18614;Parent=Msa0743130-mRNA-1
chr5_1	exon	63254937	63255077	63254937	ID=Msa0743130-mRNA-1:exon:18615;Parent=Msa0743130-mRNA-1
chr5_1	exon	63255188	63256253	63255188	ID=Msa0743130-mRNA-1:exon:18616;Parent=Msa0743130-mRNA-1
chr5_1	exon	63256279	63256351	63256279	ID=Msa0743130-mRNA-1:exon:18617;Parent=Msa0743130-mRNA-1
chr5_1	five_prime_UTR	63252902	63252966	63252902	ID=Msa0743130-mRNA-1:five_prime_utr;Parent=Msa0743130-mRNA-1
chr5_1	CDS	63252967	63253057	63252967	ID=Msa0743130-mRNA-1:cds;Parent=Msa0743130-mRNA-1
chr5_1	CDS	63253148	63253248	63253148	ID=Msa0743130-mRNA-1:cds;Parent=Msa0743130-mRNA-1
chr5_1	CDS	63254282	63254391	63254282	ID=Msa0743130-mRNA-1:cds;Parent=Msa0743130-mRNA-1
chr5_1	CDS	63254715	63254790	63254715	ID=Msa0743130-mRNA-1:cds;Parent=Msa0743130-mRNA-1
chr5_1	CDS	63254937	63255077	63254937	ID=Msa0743130-mRNA-1:cds;Parent=Msa0743130-mRNA-1
chr5_1	CDS	63255188	63256135	63255188	ID=Msa0743130-mRNA-1:cds;Parent=Msa0743130-mRNA-1
chr5_1	three_prime_UTR	63256136	63256253	63256136	ID=Msa0743130-mRNA-1:three_prime_utr;Parent=Msa0743130-mRNA-1
chr5_1	three_prime_UTR	63256279	63256351	63256279	ID=Msa0743130-mRNA-1:three_prime_utr;Parent=Msa0743130-mRNA-1

Gene Sequence

>Msa0743130

ATGGCGGAGAACGAACCAGCGAAGCCTTTGTTACCATACCTTCAACGCGCCGATGAATTGCAGAAACACGAACCTCTCGTTGCTTATTACTGTCGTTTATATGCGATGGAAAGAGGATTGAGGATTCCACAAAGTGAACGCACCAAAACTACCAATGCCCTTCTTGTTTCTCTCATGAAACAGCTTGAAAAGGATAAAAAGGGACTCAAGTTGGGGCCTGAAGATAATTTATATCTTGAGGGATTTGCTTTGAATGTGTTTGGGAAAGCAGACAAGCAAGATCGTGCTGGAAGAGCAGATGTGAATACAGCCAAAACATTTTACGCTGCTAGCATCTTTTTTGAGATTCTTAATCAATTTGGAGAACTTCAGCCTGATCTGGAGCAGAAACAGAAATATGCAGTATGGAAAGCAGCTGATATAAGAAAGGCTTTGAAAGAAGGAAGGAAGCCTGTGGCTGGCCCACCTGCTGGTGACGAGGACCTGTCCGCTCTGCCGAGCTCTCCTAGTAATATATATGATATTGGGACTACTGAAACTTCTGCTTCTGGTGCTGGGTCAGAATCCGATTCAACACATAGTTATCATAACCCTGTCAACTACCAGAATCTGCCAAGCATTCCTCCTGCACCTAAATTCAACGACACTCTTAATGATCAAAATTCTGCAAACATTCCACCATCTTTGCAGTTTCATGATAGGGTAAATGATAATAAGCATTCTTCCGTTGTTTCTCCATCATCTCACTCTTATACACCTGGAGTTTATCCTTCCCAAGACTACCATCCTCCTCCATCTTCCCAGGATTATCATCACCCACCACCTTCCCAAGAATACCATCCTCCTCCACCTTCCCAAGAATACCATCCTCCTCCACCTTCCCAAGATTACCATCCTCCGCCATCTTCCCAGGATTACCATCCTCCTCCACCTTCTCAAGATTATCAACCCCCTCCACCATCCCAAGATTACCATCAGCCTCCACCTGCAAGATCAGACAGTTCTTATTCTGACCCCTACAACCACCAACAATACTCACAAGATCAGTCACAGAATTTAGGTCCTAATTACCCTTCTCACGAAACTCCCCCTCCTTACTCTCTTCCCCATTTTCAATCTTATCCAAGTTTTACAGAAAGCAGCCTACCGTCGGTACCAGTAAACCACACTTATTATCAAGGTCCCGATGCTTCATATTCTTCCCAGTCAGCTCCTCTGACTACAAACCATTCATTAAATTCCCAAAACAGTTCCAGCAGCAGAAAAGGTACTGTCCCGGAACCCAAGCCAACAACTCCGACATACCAGTATGACAGTAGTTACCAGCCTCCACCTGAAAGAATAGCAGAGGCACACAAAGCTGCAAGATTTGCTGTTGGGGCACTGGCATTCGATGATGTCTCAATTGCAGTAGACTACTTGAAGAAATCACTCGAGTTGCTAACAAACCCATCAGTTGGCCAGTAA

Protein sequence

>Msa0743130

MAENEPAKPLLPYLQRADELQKHEPLVAYYCRLYAMERGLRIPQSERTKTTNALLVSLMKQLEKDKKGLKLGPEDNLYLEGFALNVFGKADKQDRAGRADVNTAKTFYAASIFFEILNQFGELQPDLEQKQKYAVWKAADIRKALKEGRKPVAGPPAGDEDLSALPSSPSNIYDIGTTETSASGAGSESDSTHSYHNPVNYQNLPSIPPAPKFNDTLNDQNSANIPPSLQFHDRVNDNKHSSVVSPSSHSYTPGVYPSQDYHPPPSSQDYHHPPPSQEYHPPPPSQEYHPPPPSQDYHPPPSSQDYHPPPPSQDYQPPPPSQDYHQPPPARSDSSYSDPYNHQQYSQDQSQNLGPNYPSHETPPPYSLPHFQSYPSFTESSLPSVPVNHTYYQGPDASYSSQSAPLTTNHSLNSQNSSSSRKGTVPEPKPTTPTYQYDSSYQPPPERIAEAHKAARFAVGALAFDDVSIAVDYLKKSLELLTNPSVGQ*