Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743130 | XP_003617645.1 | 97.336 | 488 | 12 | 1 | 1 | 488 | 1 | 487 | 0.0 | 948 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743130 | sp|Q9SZ15|LIP5_ARATH | 48.185 | 496 | 163 | 14 | 4 | 487 | 5 | 418 | 3.16e-115 | 348 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743130 | G7K8Q1 | 97.336 | 488 | 12 | 1 | 1 | 488 | 1 | 487 | 0.0 | 948 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032840 | Msa0743130 | 0.825284 | 5.096833e-54 | -8.615850e-47 |
| Msa0114540 | Msa0743130 | 0.814254 | 1.691825e-51 | -8.615850e-47 |
| Msa0743130 | Msa0756630 | 0.808745 | 2.662897e-50 | -8.615850e-47 |
| Msa0743130 | Msa0777570 | 0.817758 | 2.793138e-52 | -8.615850e-47 |
| Msa0743130 | Msa0780170 | 0.853947 | 1.705776e-61 | -8.615850e-47 |
| Msa0743130 | Msa0863280 | 0.965880 | 3.507806e-125 | -8.615850e-47 |
| Msa0743130 | Msa0932780 | 0.814825 | 1.265060e-51 | -8.615850e-47 |
| Msa0743130 | Msa0970570 | 0.816908 | 4.338857e-52 | -8.615850e-47 |
| Msa0743130 | Msa0970630 | 0.817849 | 2.664549e-52 | -8.615850e-47 |
| Msa0743130 | Msa1004900 | 0.829663 | 4.537131e-55 | -8.615850e-47 |
| Msa0743130 | Msa1104370 | -0.811755 | 5.974942e-51 | -8.615850e-47 |
| Msa0743130 | Msa1116130 | 0.803371 | 3.599104e-49 | -8.615850e-47 |
| Msa0743130 | Msa1211140 | 0.816731 | 4.753287e-52 | -8.615850e-47 |
| Msa0743130 | Msa1211150 | 0.816942 | 4.263817e-52 | -8.615850e-47 |
| Msa0743130 | Msa1259070 | 0.807387 | 5.180877e-50 | -8.615850e-47 |
| Msa0743130 | Msa1259590 | 0.800444 | 1.437099e-48 | -8.615850e-47 |
| Msa0743130 | Msa1269580 | 0.827516 | 1.498382e-54 | -8.615850e-47 |
| Msa0743130 | Msa1299290 | 0.817583 | 3.058975e-52 | -8.615850e-47 |
| Msa0743130 | Msa1299300 | 0.821031 | 5.010962e-53 | -8.615850e-47 |
| Msa0743130 | Msa1332040 | 0.820423 | 6.914142e-53 | -8.615850e-47 |
| Msa0743130 | Msa1364470 | 0.821094 | 4.846374e-53 | -8.615850e-47 |
| Msa0743130 | Msa1429360 | 0.835732 | 1.414219e-56 | -8.615850e-47 |
| Msa0743130 | Msa1454290 | 0.803866 | 2.841259e-49 | -8.615850e-47 |
| Msa0138820 | Msa0743130 | 0.806745 | 7.085194e-50 | -8.615850e-47 |
| Msa0196130 | Msa0743130 | 0.835078 | 2.068745e-56 | -8.615850e-47 |
| Msa0215320 | Msa0743130 | 0.829399 | 5.261099e-55 | -8.615850e-47 |
| Msa0230550 | Msa0743130 | 0.809968 | 1.455488e-50 | -8.615850e-47 |
| Msa0238070 | Msa0743130 | 0.820383 | 7.062897e-53 | -8.615850e-47 |
| Msa0436280 | Msa0743130 | 0.834574 | 2.770311e-56 | -8.615850e-47 |
| Msa0294560 | Msa0743130 | 0.880367 | 5.820932e-70 | -8.615850e-47 |
| Msa0336040 | Msa0743130 | 0.800025 | 1.749140e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743130 | MtrunA17_Chr5g0444891 | 97.336 | 488 | 12 | 1 | 1 | 488 | 1 | 487 | 0.0 | 948 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0743130 | AT4G26750.1 | 48.185 | 496 | 163 | 14 | 4 | 487 | 5 | 418 | 3.21e-116 | 348 |
Find 169 sgRNAs with CRISPR-Local
Find 253 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGCCTCTGCTATTCTTTC+AGG | 0.134746 | 5_1:-63256001 | None:intergenic |
| TTCTGCTGCTGGAACTGTTT+TGG | 0.177816 | 5_1:-63255910 | None:intergenic |
| TTTGAGATTCTTAATCAATT+TGG | 0.204458 | 5_1:+63254752 | Msa0743130:CDS |
| AACTTGGATAAGATTGAAAA+TGG | 0.218480 | 5_1:-63255775 | None:intergenic |
| TGTTTATTCCTGCAGGATAT+TGG | 0.237590 | 5_1:+63255173 | Msa0743130:intron |
| TTAAGAGTGTCGTTGAATTT+AGG | 0.245833 | 5_1:-63255299 | None:intergenic |
| GAGTTGTTGGCTTGGGTTCC+GGG | 0.246329 | 5_1:-63255943 | None:intergenic |
| TTATTGTTTATAGGATAAAA+AGG | 0.254607 | 5_1:+63254269 | Msa0743130:intron |
| GGAGTTGTTGGCTTGGGTTC+CGG | 0.263293 | 5_1:-63255944 | None:intergenic |
| TGATAATAAGTGTGGTTTAC+TGG | 0.267283 | 5_1:-63255824 | None:intergenic |
| GTGGAGGAGGATGGTATTCT+TGG | 0.285105 | 5_1:-63255496 | None:intergenic |
| GTGGAGGAGGATGGTATTCT+TGG | 0.285105 | 5_1:-63255523 | None:intergenic |
| CATCTTTGCAGTTTCATGAT+AGG | 0.285900 | 5_1:+63255348 | Msa0743130:CDS |
| AAGAAGGGCATTGGTAGTTT+TGG | 0.293479 | 5_1:-63253199 | None:intergenic |
| GAAACTTCTGCTTCTGGTGC+TGG | 0.302418 | 5_1:+63255203 | Msa0743130:CDS |
| GTTTATTCCTGCAGGATATT+GGG | 0.307438 | 5_1:+63255174 | Msa0743130:intron |
| GTTTCGTGAGAAGGGTAATT+AGG | 0.308078 | 5_1:-63255731 | None:intergenic |
| GGATTTGCTTTGAATGTGTT+TGG | 0.322140 | 5_1:+63254330 | Msa0743130:CDS |
| TGAGTATTGTTGGTGGTTGT+AGG | 0.322811 | 5_1:-63255684 | None:intergenic |
| CAAGATCAGTCACAGAATTT+AGG | 0.329866 | 5_1:+63255707 | Msa0743130:CDS |
| GAGGAATGCTTGGCAGATTC+TGG | 0.332427 | 5_1:-63255271 | None:intergenic |
| GTAATCTTGGGATGGTGGAG+GGG | 0.340744 | 5_1:-63255618 | None:intergenic |
| GTGGAGGAGGATGGTAATCC+TGG | 0.345422 | 5_1:-63255577 | None:intergenic |
| TACTGGTATGTCGGAGTTGT+TGG | 0.354417 | 5_1:-63255956 | None:intergenic |
| GCTAGCAGCGTAAAATGTTT+TGG | 0.359188 | 5_1:-63254723 | None:intergenic |
| TAATCTTGGGATGGTGGAGG+GGG | 0.367428 | 5_1:-63255617 | None:intergenic |
| ACTTGGATAAGATTGAAAAT+GGG | 0.376597 | 5_1:-63255774 | None:intergenic |
| TAAGAACTGTCTGATCTTGC+AGG | 0.381758 | 5_1:-63255653 | None:intergenic |
| GTGGAGGCTGATGGTAATCT+TGG | 0.383288 | 5_1:-63255631 | None:intergenic |
| TGAAAATGGGGAAGAGAGTA+AGG | 0.385158 | 5_1:-63255761 | None:intergenic |
| TGGTAATCTTGGGATGGTGG+AGG | 0.385786 | 5_1:-63255620 | None:intergenic |
| GGCAGATTCTGGTAGTTGAC+AGG | 0.387519 | 5_1:-63255260 | None:intergenic |
| ATGGCGGAGGATGGTAATCT+TGG | 0.389781 | 5_1:-63255550 | None:intergenic |
| TGGTATTCTTGGGAAGGTGG+TGG | 0.395977 | 5_1:-63255485 | None:intergenic |
| AAGATTTGCTGTTGGGGCAC+TGG | 0.399437 | 5_1:+63256033 | Msa0743130:CDS |
| ATGGAGGAGGATGGTAGTCT+TGG | 0.402313 | 5_1:-63255442 | None:intergenic |
| CCTGTGGCTGGCCCACCTGC+TGG | 0.403221 | 5_1:+63255009 | Msa0743130:CDS |
| ACTGATCTTGTGAGTATTGT+TGG | 0.408641 | 5_1:-63255694 | None:intergenic |
| ACTACTGAAACTTCTGCTTC+TGG | 0.414352 | 5_1:+63255197 | Msa0743130:CDS |
| AAGCTGCAAGATTTGCTGTT+GGG | 0.416451 | 5_1:+63256026 | Msa0743130:CDS |
| GGTAATCTTGGGATGGTGGA+GGG | 0.421779 | 5_1:-63255619 | None:intergenic |
| GAAGATAATTTATATCTTGA+GGG | 0.424873 | 5_1:+63254309 | Msa0743130:CDS |
| ATCTTTGCAGTTTCATGATA+GGG | 0.431940 | 5_1:+63255349 | Msa0743130:CDS |
| ATGATAACTATGTGTTGAAT+CGG | 0.432222 | 5_1:-63255234 | None:intergenic |
| TCATCGGCGCGTTGAAGGTA+TGG | 0.436007 | 5_1:-63253000 | None:intergenic |
| CATTAATATAGAATTGAGAT+TGG | 0.437174 | 5_1:+63256277 | Msa0743130:intron |
| GAGTATTGTTGGTGGTTGTA+GGG | 0.438226 | 5_1:-63255683 | None:intergenic |
| GATTTGCTTTGAATGTGTTT+GGG | 0.440793 | 5_1:+63254331 | Msa0743130:CDS |
| TCTCATGAAACAGCTTGAAA+AGG | 0.442260 | 5_1:+63253227 | Msa0743130:CDS |
| AATCATACATATATATTACT+AGG | 0.444945 | 5_1:-63255063 | None:intergenic |
| ATAAGAAAGGCTTTGAAAGA+AGG | 0.446815 | 5_1:+63254979 | Msa0743130:CDS |
| GGTATTCTTGGGAAGGTGGT+GGG | 0.448979 | 5_1:-63255484 | None:intergenic |
| GAGAGCTCGGCAGAGCGGAC+AGG | 0.449022 | 5_1:-63255041 | None:intergenic |
| CGCTGGTTCGTTCTCCGCCA+TGG | 0.449805 | 5_1:-63252965 | None:intergenic |
| CTATTCTTTCAGGTGGAGGC+TGG | 0.456145 | 5_1:-63255991 | None:intergenic |
| CTTGAGAAGGTGGAGGAGGA+TGG | 0.462748 | 5_1:-63255586 | None:intergenic |
| AACAGTTCCAGCAGCAGAAA+AGG | 0.463781 | 5_1:+63255914 | Msa0743130:CDS |
| TCAAGATATAAATTATCTTC+AGG | 0.464007 | 5_1:-63254306 | None:intergenic |
| CGTTTATATGCGATGGAAAG+AGG | 0.465990 | 5_1:+63253150 | Msa0743130:CDS |
| GCAATTCATCGGCGCGTTGA+AGG | 0.466290 | 5_1:-63253005 | None:intergenic |
| AGAAACAGAAATATGCAGTA+TGG | 0.466421 | 5_1:+63254944 | Msa0743130:CDS |
| CTTGGGAAGGTGGAGGAGGA+TGG | 0.470573 | 5_1:-63255505 | None:intergenic |
| CTTGGGAAGGTGGAGGAGGA+TGG | 0.470573 | 5_1:-63255532 | None:intergenic |
| CTATCATGAAACTGCAAAGA+TGG | 0.476651 | 5_1:-63255347 | None:intergenic |
| TTCGTGTTTCTGCAATTCAT+CGG | 0.479969 | 5_1:-63253016 | None:intergenic |
| TTGTAGTCAGAGGAGCTGAC+TGG | 0.480299 | 5_1:-63255871 | None:intergenic |
| GGATGGTATTCTTGGGAAGG+TGG | 0.483390 | 5_1:-63255515 | None:intergenic |
| TGGAGGAGGATGGTAGTCTT+GGG | 0.486188 | 5_1:-63255441 | None:intergenic |
| TAATCTTGGGAAGGTGGAGG+AGG | 0.487363 | 5_1:-63255536 | None:intergenic |
| AGGCTGCTTTCTGTAAAACT+TGG | 0.488429 | 5_1:-63255791 | None:intergenic |
| TATGTCGGAGTTGTTGGCTT+GGG | 0.489287 | 5_1:-63255950 | None:intergenic |
| TGAAGATAATTTATATCTTG+AGG | 0.489442 | 5_1:+63254308 | Msa0743130:CDS |
| CCATCCTCCGCCATCTTCCC+AGG | 0.489477 | 5_1:+63255559 | Msa0743130:CDS |
| TATTCTTGGGAAGGTGGAGG+AGG | 0.490689 | 5_1:-63255509 | None:intergenic |
| GGATGGTATTCTTGGGAAGG+TGG | 0.492174 | 5_1:-63255488 | None:intergenic |
| TAATCTTGAGAAGGTGGAGG+AGG | 0.493863 | 5_1:-63255590 | None:intergenic |
| TATGGTAACAAAGGCTTCGC+TGG | 0.495318 | 5_1:-63252982 | None:intergenic |
| TGATGATAATCCTGGGAAGA+TGG | 0.496116 | 5_1:-63255461 | None:intergenic |
| GTGGTGGGTGATGATAATCC+TGG | 0.496882 | 5_1:-63255469 | None:intergenic |
| AAACTTCTGCTTCTGGTGCT+GGG | 0.497466 | 5_1:+63255204 | Msa0743130:CDS |
| GGTGTATAAGAGTGAGATGA+TGG | 0.497876 | 5_1:-63255404 | None:intergenic |
| GAGATTGGTGTCTTTGTCAA+GGG | 0.498931 | 5_1:+63256292 | Msa0743130:three_prime_UTR |
| TCTGCTATTCTTTCAGGTGG+AGG | 0.499453 | 5_1:-63255995 | None:intergenic |
| GCTGGTAACTACTGTCATAC+TGG | 0.499902 | 5_1:-63255973 | None:intergenic |
| CCAGCAGGTGGGCCAGCCAC+AGG | 0.500659 | 5_1:-63255009 | None:intergenic |
| GTATGTCGGAGTTGTTGGCT+TGG | 0.500827 | 5_1:-63255951 | None:intergenic |
| TTAGGTGCAGGAGGAATGCT+TGG | 0.501005 | 5_1:-63255281 | None:intergenic |
| AAATCTTACTGGCCAACTGA+TGG | 0.501251 | 5_1:-63256118 | None:intergenic |
| GGATGGTAATCCTGGGAAGA+TGG | 0.502963 | 5_1:-63255569 | None:intergenic |
| TGGGAAGAATATGAAGCATC+GGG | 0.505824 | 5_1:-63255851 | None:intergenic |
| TCTCCGCCATGGAAAATTCT+CGG | 0.508445 | 5_1:-63252954 | None:intergenic |
| TTTAGGTCGTTTATATGCGA+TGG | 0.510248 | 5_1:+63253143 | Msa0743130:intron |
| TGGAGGAGGATGGTATTCTT+GGG | 0.510443 | 5_1:-63255495 | None:intergenic |
| TGGAGGAGGATGGTATTCTT+GGG | 0.510443 | 5_1:-63255522 | None:intergenic |
| TGGCGGAGGATGGTAATCTT+GGG | 0.517941 | 5_1:-63255549 | None:intergenic |
| GCCTCTGCTATTCTTTCAGG+TGG | 0.521868 | 5_1:-63255998 | None:intergenic |
| GAAGGAAGGAAGCCTGTGGC+TGG | 0.522191 | 5_1:+63254997 | Msa0743130:CDS |
| AAAGCTGCAAGATTTGCTGT+TGG | 0.523329 | 5_1:+63256025 | Msa0743130:CDS |
| GACAGGTCCTCGTCACCAGC+AGG | 0.523402 | 5_1:-63255024 | None:intergenic |
| CTTGGATAAGATTGAAAATG+GGG | 0.523875 | 5_1:-63255773 | None:intergenic |
| CTGTCTGATCTTGCAGGTGG+AGG | 0.526101 | 5_1:-63255647 | None:intergenic |
| AGGTCCTCGTCACCAGCAGG+TGG | 0.527025 | 5_1:-63255021 | None:intergenic |
| AAAATTGGTACTGGTATGAA+TGG | 0.527893 | 5_1:+63256147 | Msa0743130:three_prime_UTR |
| ATGCGATGGAAAGAGGATTG+AGG | 0.529928 | 5_1:+63253157 | Msa0743130:CDS |
| AATCTTACTGGCCAACTGAT+GGG | 0.529939 | 5_1:-63256117 | None:intergenic |
| TGGTATTCTTGGGAAGGTGG+AGG | 0.531288 | 5_1:-63255512 | None:intergenic |
| TGGTAATCTTGGGAAGGTGG+AGG | 0.531288 | 5_1:-63255539 | None:intergenic |
| GAAAGGCTTTGAAAGAAGGA+AGG | 0.532058 | 5_1:+63254983 | Msa0743130:CDS |
| TGAGATTGGTGTCTTTGTCA+AGG | 0.533167 | 5_1:+63256291 | Msa0743130:three_prime_UTR |
| AATGGGGAAGAGAGTAAGGA+GGG | 0.535585 | 5_1:-63255757 | None:intergenic |
| GAAAGCAGCTGATATAAGAA+AGG | 0.537489 | 5_1:+63254966 | Msa0743130:CDS |
| CTGGGAAGAATATGAAGCAT+CGG | 0.541818 | 5_1:-63255852 | None:intergenic |
| TGGAGGCTGATGGTAATCTT+GGG | 0.542772 | 5_1:-63255630 | None:intergenic |
| GTAAACCACACTTATTATCA+AGG | 0.542813 | 5_1:+63255827 | Msa0743130:CDS |
| GTGTCGTTGAATTTAGGTGC+AGG | 0.546530 | 5_1:-63255293 | None:intergenic |
| GATCTTGTGAGTATTGTTGG+TGG | 0.547197 | 5_1:-63255691 | None:intergenic |
| GCAGACAAGCAAGATCGTGC+TGG | 0.548143 | 5_1:+63254357 | Msa0743130:CDS |
| CCATCCTCCTCCATCTTCCC+AGG | 0.549730 | 5_1:+63255451 | Msa0743130:CDS |
| GGCTGATGGTAATCTTGGGA+TGG | 0.550328 | 5_1:-63255626 | None:intergenic |
| TGGGGAAGAGAGTAAGGAGG+GGG | 0.550544 | 5_1:-63255755 | None:intergenic |
| GAGAGAAACAAGAAGGGCAT+TGG | 0.550906 | 5_1:-63253208 | None:intergenic |
| TGTAGTCAGAGGAGCTGACT+GGG | 0.551319 | 5_1:-63255870 | None:intergenic |
| AATGAATGGTTTGTAGTCAG+AGG | 0.554312 | 5_1:-63255881 | None:intergenic |
| GGATGGTAATCTTGGGAAGG+TGG | 0.559838 | 5_1:-63255542 | None:intergenic |
| AGTATTGTTGGTGGTTGTAG+GGG | 0.560541 | 5_1:-63255682 | None:intergenic |
| AGCTGCAAGATTTGCTGTTG+GGG | 0.561218 | 5_1:+63256027 | Msa0743130:CDS |
| TTGCTAACAAACCCATCAGT+TGG | 0.561547 | 5_1:+63256106 | Msa0743130:CDS |
| TGGCCCACCTGCTGGTGACG+AGG | 0.563390 | 5_1:+63255017 | Msa0743130:CDS |
| CCTGGGAAGATGGCGGAGGA+TGG | 0.567339 | 5_1:-63255559 | None:intergenic |
| GCAGATTCTGGTAGTTGACA+GGG | 0.573055 | 5_1:-63255259 | None:intergenic |
| GGAGGATGGTATTCTTGGGA+AGG | 0.584118 | 5_1:-63255491 | None:intergenic |
| GGAGGATGGTATTCTTGGGA+AGG | 0.584118 | 5_1:-63255518 | None:intergenic |
| GGTTGATAATCTTGAGAAGG+TGG | 0.586451 | 5_1:-63255596 | None:intergenic |
| CTACTGTCATACTGGTATGT+CGG | 0.586527 | 5_1:-63255965 | None:intergenic |
| CAGCAGAAAAGGTACTGTCC+CGG | 0.588967 | 5_1:+63255925 | Msa0743130:CDS |
| TCATGAAACTGCAAAGATGG+TGG | 0.589439 | 5_1:-63255344 | None:intergenic |
| GTTTCATGAGAGAAACAAGA+AGG | 0.590237 | 5_1:-63253215 | None:intergenic |
| TCTTGGGAAGGATAAACTCC+AGG | 0.591333 | 5_1:-63255425 | None:intergenic |
| TGATGGTAATCTTGGGATGG+TGG | 0.592478 | 5_1:-63255623 | None:intergenic |
| TATATATTACTAGGAGAGCT+CGG | 0.600017 | 5_1:-63255054 | None:intergenic |
| TCATCTCACTCTTATACACC+TGG | 0.602585 | 5_1:+63255407 | Msa0743130:CDS |
| GGAGGATGGTAGTCTTGGGA+AGG | 0.602964 | 5_1:-63255437 | None:intergenic |
| AGATTGGTGTCTTTGTCAAG+GGG | 0.605961 | 5_1:+63256293 | Msa0743130:three_prime_UTR |
| TGATAATCTTGAGAAGGTGG+AGG | 0.608409 | 5_1:-63255593 | None:intergenic |
| CCTGGGAAGATGGAGGAGGA+TGG | 0.609866 | 5_1:-63255451 | None:intergenic |
| CGGGACCTTGATAATAAGTG+TGG | 0.610947 | 5_1:-63255832 | None:intergenic |
| ATCTTGCAGGTGGAGGCTGA+TGG | 0.612435 | 5_1:-63255640 | None:intergenic |
| CGTTGAAGGTATGGTAACAA+AGG | 0.615442 | 5_1:-63252991 | None:intergenic |
| TGGAGGAGGATGGTAATCCT+GGG | 0.619455 | 5_1:-63255576 | None:intergenic |
| TAATCCTGGGAAGATGGAGG+AGG | 0.623898 | 5_1:-63255455 | None:intergenic |
| GGTTTACTGGTACCGACGGT+AGG | 0.625435 | 5_1:-63255811 | None:intergenic |
| TACAGAAAGCAGCCTACCGT+CGG | 0.625941 | 5_1:+63255799 | Msa0743130:CDS |
| TGGTAATCCTGGGAAGATGG+CGG | 0.626991 | 5_1:-63255566 | None:intergenic |
| AAATGGGGAAGAGAGTAAGG+AGG | 0.630859 | 5_1:-63255758 | None:intergenic |
| ATGGGGAAGAGAGTAAGGAG+GGG | 0.633348 | 5_1:-63255756 | None:intergenic |
| TAATCCTGGGAAGATGGCGG+AGG | 0.637109 | 5_1:-63255563 | None:intergenic |
| GTGTGGTTTACTGGTACCGA+CGG | 0.643953 | 5_1:-63255815 | None:intergenic |
| TCGTTGAATTTAGGTGCAGG+AGG | 0.645300 | 5_1:-63255290 | None:intergenic |
| GAACTGTCTGATCTTGCAGG+TGG | 0.649066 | 5_1:-63255650 | None:intergenic |
| TCCACCTGAAAGAATAGCAG+AGG | 0.659264 | 5_1:+63255997 | Msa0743130:CDS |
| TGGTGGGTGATGATAATCCT+GGG | 0.660191 | 5_1:-63255468 | None:intergenic |
| TGATAATCCTGGGAAGATGG+AGG | 0.661390 | 5_1:-63255458 | None:intergenic |
| GGTCCTCGTCACCAGCAGGT+GGG | 0.661611 | 5_1:-63255020 | None:intergenic |
| GTGAGATGATGGAGAAACAA+CGG | 0.665021 | 5_1:-63255393 | None:intergenic |
| GGAGGATGGTAATCTTGGGA+AGG | 0.668348 | 5_1:-63255545 | None:intergenic |
| TTTCATGAGAGAAACAAGAA+GGG | 0.670105 | 5_1:-63253214 | None:intergenic |
| GAAAGAAGGAAGGAAGCCTG+TGG | 0.681972 | 5_1:+63254993 | Msa0743130:CDS |
| TTACAGTAATAAGCAACGAG+AGG | 0.703762 | 5_1:-63253039 | None:intergenic |
| ACTAGGAGAGCTCGGCAGAG+CGG | 0.722295 | 5_1:-63255046 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATAATTAATATAATT+AGG | - | chr5_1:63253116-63253135 | None:intergenic | 0.0% |
| !!! | TTAATATAATTAGGTTATTT+TGG | - | chr5_1:63253107-63253126 | None:intergenic | 10.0% |
| !!! | ATTATATTTTTTGTGAATTT+AGG | + | chr5_1:63253126-63253145 | Msa0743130:intron | 10.0% |
| !!! | ATAATTTTATAAACATATTG+AGG | - | chr5_1:63254242-63254261 | None:intergenic | 10.0% |
| !! | TGTAAATAATAGTAAATTGA+AGG | - | chr5_1:63254049-63254068 | None:intergenic | 15.0% |
| !! | ATCATTGTATTATTGTTTAT+AGG | + | chr5_1:63254260-63254279 | Msa0743130:intron | 15.0% |
| !! | TTATTGTTTATAGGATAAAA+AGG | + | chr5_1:63254269-63254288 | Msa0743130:intron | 15.0% |
| !! | TATTGTTTATAGGATAAAAA+GGG | + | chr5_1:63254270-63254289 | Msa0743130:intron | 15.0% |
| !! | TTAAAAATACAATTACAGAA+AGG | - | chr5_1:63254895-63254914 | None:intergenic | 15.0% |
| !! | AATCATACATATATATTACT+AGG | - | chr5_1:63255066-63255085 | None:intergenic | 15.0% |
| !! | ATTGAATGAATTGAATTCAT+TGG | + | chr5_1:63253564-63253583 | Msa0743130:intron | 20.0% |
| !! | AAAATTTCGTATAGTTAGAT+AGG | + | chr5_1:63253636-63253655 | Msa0743130:intron | 20.0% |
| !! | TCAAGATATAAATTATCTTC+AGG | - | chr5_1:63254309-63254328 | None:intergenic | 20.0% |
| !! | TGAAGATAATTTATATCTTG+AGG | + | chr5_1:63254308-63254327 | Msa0743130:CDS | 20.0% |
| !! | GAAGATAATTTATATCTTGA+GGG | + | chr5_1:63254309-63254328 | Msa0743130:CDS | 20.0% |
| !!! | TTTGAGATTCTTAATCAATT+TGG | + | chr5_1:63254752-63254771 | Msa0743130:CDS | 20.0% |
| !!! | ATTTTTACACAAAATCTTAC+TGG | - | chr5_1:63256132-63256151 | None:intergenic | 20.0% |
| !!! | GTAAGATTTTGTGTAAAAAT+TGG | + | chr5_1:63256132-63256151 | Msa0743130:exon | 20.0% |
| !! | CATTAATATAGAATTGAGAT+TGG | + | chr5_1:63256277-63256296 | Msa0743130:intron | 20.0% |
| !!! | TAGCTTTTGAAAAATTACAG+TGG | + | chr5_1:63253434-63253453 | Msa0743130:intron | 25.0% |
| !!! | CAAATGACTCATTTTAAGTT+AGG | + | chr5_1:63253827-63253846 | Msa0743130:intron | 25.0% |
| ! | CAAGTGATAAAGAAAAAAAC+AGG | - | chr5_1:63254154-63254173 | None:intergenic | 25.0% |
| ! | CTATTTAACAACACTGTTAT+AGG | - | chr5_1:63254471-63254490 | None:intergenic | 25.0% |
| ! | ATGATAACTATGTGTTGAAT+CGG | - | chr5_1:63255237-63255256 | None:intergenic | 25.0% |
| ! | ACTTGGATAAGATTGAAAAT+GGG | - | chr5_1:63255777-63255796 | None:intergenic | 25.0% |
| ! | AACTTGGATAAGATTGAAAA+TGG | - | chr5_1:63255778-63255797 | None:intergenic | 25.0% |
| !!! | TGTTTTGGGAATTTAATGAA+TGG | - | chr5_1:63255898-63255917 | None:intergenic | 25.0% |
| !! | TTTTGTGTAAAAATTGGTAC+TGG | + | chr5_1:63256138-63256157 | Msa0743130:three_prime_UTR | 25.0% |
| TTTCATGAGAGAAACAAGAA+GGG | - | chr5_1:63253217-63253236 | None:intergenic | 30.0% | |
| CATTCATGCACAATAACTTT+GGG | - | chr5_1:63253341-63253360 | None:intergenic | 30.0% | |
| !!! | CAACACAATATTTTGATAGC+CGG | - | chr5_1:63253512-63253531 | None:intergenic | 30.0% |
| !!! | TATACGAAATTTTGACTGCA+TGG | - | chr5_1:63253629-63253648 | None:intergenic | 30.0% |
| ! | GCATTGACAAATCAATAGAT+AGG | + | chr5_1:63253699-63253718 | Msa0743130:intron | 30.0% |
| CATTCATGTTGTTGCTATAT+TGG | + | chr5_1:63253787-63253806 | Msa0743130:intron | 30.0% | |
| TCATTTGATCTTCATCCTTA+AGG | - | chr5_1:63253814-63253833 | None:intergenic | 30.0% | |
| !!! | CATTTTAAGTTAGGTGAATC+TGG | + | chr5_1:63253836-63253855 | Msa0743130:intron | 30.0% |
| !! | CGAACAACTCATTTTTAGAA+AGG | + | chr5_1:63253951-63253970 | Msa0743130:intron | 30.0% |
| AACATCAAAATTCAAGCATG+AGG | - | chr5_1:63254106-63254125 | None:intergenic | 30.0% | |
| TCACTTGAAAACAATTTCAG+TGG | + | chr5_1:63254167-63254186 | Msa0743130:intron | 30.0% | |
| ! | GATTTGCTTTGAATGTGTTT+GGG | + | chr5_1:63254331-63254350 | Msa0743130:CDS | 30.0% |
| TTGTTAAATAGCAGCTATAG+CGG | + | chr5_1:63254480-63254499 | Msa0743130:intron | 30.0% | |
| ! | GCTATTTGACAACATTTTAG+CGG | - | chr5_1:63254542-63254561 | None:intergenic | 30.0% |
| GCTAAAATGTTGTCAAATAG+CGG | + | chr5_1:63254541-63254560 | Msa0743130:intron | 30.0% | |
| CTAAAATGTTGTCAAATAGC+GGG | + | chr5_1:63254542-63254561 | Msa0743130:intron | 30.0% | |
| CTTCTATCACATAACTTTCT+TGG | + | chr5_1:63254631-63254650 | Msa0743130:intron | 30.0% | |
| !! | ATATTTCTGACCTATTTTGC+AGG | + | chr5_1:63254693-63254712 | Msa0743130:intron | 30.0% |
| AGAAACAGAAATATGCAGTA+TGG | + | chr5_1:63254944-63254963 | Msa0743130:CDS | 30.0% | |
| !! | ATAAGAAAGGCTTTGAAAGA+AGG | + | chr5_1:63254979-63254998 | Msa0743130:CDS | 30.0% |
| TATATATTACTAGGAGAGCT+CGG | - | chr5_1:63255057-63255076 | None:intergenic | 30.0% | |
| GTATGATTCAAAACTCAACT+CGG | + | chr5_1:63255078-63255097 | Msa0743130:intron | 30.0% | |
| !! | TTAAGAGTGTCGTTGAATTT+AGG | - | chr5_1:63255302-63255321 | None:intergenic | 30.0% |
| ATCTTTGCAGTTTCATGATA+GGG | + | chr5_1:63255349-63255368 | Msa0743130:CDS | 30.0% | |
| CTTGGATAAGATTGAAAATG+GGG | - | chr5_1:63255776-63255795 | None:intergenic | 30.0% | |
| TGATAATAAGTGTGGTTTAC+TGG | - | chr5_1:63255827-63255846 | None:intergenic | 30.0% | |
| GTAAACCACACTTATTATCA+AGG | + | chr5_1:63255827-63255846 | Msa0743130:CDS | 30.0% | |
| !! | AAAATTGGTACTGGTATGAA+TGG | + | chr5_1:63256147-63256166 | Msa0743130:three_prime_UTR | 30.0% |
| ! | TTCGTGTTTCTGCAATTCAT+CGG | - | chr5_1:63253019-63253038 | None:intergenic | 35.0% |
| TTACAGTAATAAGCAACGAG+AGG | - | chr5_1:63253042-63253061 | None:intergenic | 35.0% | |
| TTTAGGTCGTTTATATGCGA+TGG | + | chr5_1:63253143-63253162 | Msa0743130:intron | 35.0% | |
| GTTTCATGAGAGAAACAAGA+AGG | - | chr5_1:63253218-63253237 | None:intergenic | 35.0% | |
| TCTCATGAAACAGCTTGAAA+AGG | + | chr5_1:63253227-63253246 | Msa0743130:CDS | 35.0% | |
| CCATTCATGCACAATAACTT+TGG | - | chr5_1:63253342-63253361 | None:intergenic | 35.0% | |
| CCAAAGTTATTGTGCATGAA+TGG | + | chr5_1:63253339-63253358 | Msa0743130:intron | 35.0% | |
| GAATCTAAACGCTTAGATAG+AGG | + | chr5_1:63253658-63253677 | Msa0743130:intron | 35.0% | |
| ! | ACATGAATGCGTGATTTTCT+TGG | - | chr5_1:63253776-63253795 | None:intergenic | 35.0% |
| TGTTGCTATATTGGACCTTA+AGG | + | chr5_1:63253796-63253815 | Msa0743130:intron | 35.0% | |
| ! | CATGAATGTGTGCTTTTCAT+AGG | - | chr5_1:63253901-63253920 | None:intergenic | 35.0% |
| GTTGTTCGATCTTCATTCAA+AGG | - | chr5_1:63253939-63253958 | None:intergenic | 35.0% | |
| GATAAAAAGGGACTCAAGTT+GGG | + | chr5_1:63254282-63254301 | Msa0743130:CDS | 35.0% | |
| ! | ATAAAAAGGGACTCAAGTTG+GGG | + | chr5_1:63254283-63254302 | Msa0743130:CDS | 35.0% |
| ! | GGATTTGCTTTGAATGTGTT+TGG | + | chr5_1:63254330-63254349 | Msa0743130:CDS | 35.0% |
| CACTGTTATAGGCATAACAA+AGG | - | chr5_1:63254460-63254479 | None:intergenic | 35.0% | |
| TAATATTCCGCAAGGCAATA+GGG | - | chr5_1:63254584-63254603 | None:intergenic | 35.0% | |
| TTAATATTCCGCAAGGCAAT+AGG | - | chr5_1:63254585-63254604 | None:intergenic | 35.0% | |
| TGCATTGAAGTACATACATC+AGG | - | chr5_1:63254788-63254807 | None:intergenic | 35.0% | |
| ! | AGTTGCTAGTCTGTCTTATA+TGG | + | chr5_1:63254846-63254865 | Msa0743130:intron | 35.0% |
| TGTCTTATATGGCAACAACT+TGG | + | chr5_1:63254857-63254876 | Msa0743130:intron | 35.0% | |
| GTCTTATATGGCAACAACTT+GGG | + | chr5_1:63254858-63254877 | Msa0743130:intron | 35.0% | |
| TCTTATATGGCAACAACTTG+GGG | + | chr5_1:63254859-63254878 | Msa0743130:intron | 35.0% | |
| GAAAGCAGCTGATATAAGAA+AGG | + | chr5_1:63254966-63254985 | Msa0743130:CDS | 35.0% | |
| ATTCAACTGTTTATTCCTGC+AGG | + | chr5_1:63255166-63255185 | Msa0743130:intron | 35.0% | |
| TGTTTATTCCTGCAGGATAT+TGG | + | chr5_1:63255173-63255192 | Msa0743130:intron | 35.0% | |
| GTTTATTCCTGCAGGATATT+GGG | + | chr5_1:63255174-63255193 | Msa0743130:intron | 35.0% | |
| CTATCATGAAACTGCAAAGA+TGG | - | chr5_1:63255350-63255369 | None:intergenic | 35.0% | |
| CATCTTTGCAGTTTCATGAT+AGG | + | chr5_1:63255348-63255367 | Msa0743130:CDS | 35.0% | |
| ! | ACTGATCTTGTGAGTATTGT+TGG | - | chr5_1:63255697-63255716 | None:intergenic | 35.0% |
| CAAGATCAGTCACAGAATTT+AGG | + | chr5_1:63255707-63255726 | Msa0743130:CDS | 35.0% | |
| ! | AATGAATGGTTTGTAGTCAG+AGG | - | chr5_1:63255884-63255903 | None:intergenic | 35.0% |
| ! | TTCTCTCCGAGAATTTTCCA+TGG | + | chr5_1:63252948-63252967 | Msa0743130:exon | 40.0% |
| ! | CGTTGAAGGTATGGTAACAA+AGG | - | chr5_1:63252994-63253013 | None:intergenic | 40.0% |
| CGTTTATATGCGATGGAAAG+AGG | + | chr5_1:63253150-63253169 | Msa0743130:CDS | 40.0% | |
| !!! | AAGAAGGGCATTGGTAGTTT+TGG | - | chr5_1:63253202-63253221 | None:intergenic | 40.0% |
| CTTGTAACGTGACAAATCCA+CGG | - | chr5_1:63253387-63253406 | None:intergenic | 40.0% | |
| TGAGTGCATGTTTGGTATCA+CGG | - | chr5_1:63253484-63253503 | None:intergenic | 40.0% | |
| AGTGGCTGACATAGTTTGAT+TGG | + | chr5_1:63254185-63254204 | Msa0743130:intron | 40.0% | |
| GGATAAAAAGGGACTCAAGT+TGG | + | chr5_1:63254281-63254300 | Msa0743130:intron | 40.0% | |
| GCTATATCGCTAAATCGTAG+TGG | + | chr5_1:63254504-63254523 | Msa0743130:intron | 40.0% | |
| !! | TTGTCAAATAGCGGGTATAG+TGG | + | chr5_1:63254550-63254569 | Msa0743130:intron | 40.0% |
| CGGATTGTTAATATTCCGCA+AGG | - | chr5_1:63254592-63254611 | None:intergenic | 40.0% | |
| !! | GATAGAAGTGCTGTCAATCT+GGG | - | chr5_1:63254619-63254638 | None:intergenic | 40.0% |
| !! | TGATAGAAGTGCTGTCAATC+TGG | - | chr5_1:63254620-63254639 | None:intergenic | 40.0% |
| TGGCTGTATTCCTGCAAAAT+AGG | - | chr5_1:63254706-63254725 | None:intergenic | 40.0% | |
| ! | GCTAGCAGCGTAAAATGTTT+TGG | - | chr5_1:63254726-63254745 | None:intergenic | 40.0% |
| !! | TTCCGAGTTTATTTTCCAGC+TGG | + | chr5_1:63254918-63254937 | Msa0743130:intron | 40.0% |
| CTCCAGCTGGAAAATAAACT+CGG | - | chr5_1:63254923-63254942 | None:intergenic | 40.0% | |
| !! | GAAAGGCTTTGAAAGAAGGA+AGG | + | chr5_1:63254983-63255002 | Msa0743130:CDS | 40.0% |
| ACTACTGAAACTTCTGCTTC+TGG | + | chr5_1:63255197-63255216 | Msa0743130:CDS | 40.0% | |
| TCATGAAACTGCAAAGATGG+TGG | - | chr5_1:63255347-63255366 | None:intergenic | 40.0% | |
| !! | GTGAGATGATGGAGAAACAA+CGG | - | chr5_1:63255396-63255415 | None:intergenic | 40.0% |
| GGTGTATAAGAGTGAGATGA+TGG | - | chr5_1:63255407-63255426 | None:intergenic | 40.0% | |
| TCATCTCACTCTTATACACC+TGG | + | chr5_1:63255407-63255426 | Msa0743130:CDS | 40.0% | |
| TGATGATAATCCTGGGAAGA+TGG | - | chr5_1:63255464-63255483 | None:intergenic | 40.0% | |
| TGATAATCTTGAGAAGGTGG+AGG | - | chr5_1:63255596-63255615 | None:intergenic | 40.0% | |
| !! | GGTTGATAATCTTGAGAAGG+TGG | - | chr5_1:63255599-63255618 | None:intergenic | 40.0% |
| TAAGAACTGTCTGATCTTGC+AGG | - | chr5_1:63255656-63255675 | None:intergenic | 40.0% | |
| !! | AGTATTGTTGGTGGTTGTAG+GGG | - | chr5_1:63255685-63255704 | None:intergenic | 40.0% |
| !! | GAGTATTGTTGGTGGTTGTA+GGG | - | chr5_1:63255686-63255705 | None:intergenic | 40.0% |
| !! | TGAGTATTGTTGGTGGTTGT+AGG | - | chr5_1:63255687-63255706 | None:intergenic | 40.0% |
| ! | GATCTTGTGAGTATTGTTGG+TGG | - | chr5_1:63255694-63255713 | None:intergenic | 40.0% |
| GTTTCGTGAGAAGGGTAATT+AGG | - | chr5_1:63255734-63255753 | None:intergenic | 40.0% | |
| TGAAAATGGGGAAGAGAGTA+AGG | - | chr5_1:63255764-63255783 | None:intergenic | 40.0% | |
| ! | AGGCTGCTTTCTGTAAAACT+TGG | - | chr5_1:63255794-63255813 | None:intergenic | 40.0% |
| ! | TGGGAAGAATATGAAGCATC+GGG | - | chr5_1:63255854-63255873 | None:intergenic | 40.0% |
| CTGGGAAGAATATGAAGCAT+CGG | - | chr5_1:63255855-63255874 | None:intergenic | 40.0% | |
| CTACTGTCATACTGGTATGT+CGG | - | chr5_1:63255968-63255987 | None:intergenic | 40.0% | |
| !! | AAAGCTGCAAGATTTGCTGT+TGG | + | chr5_1:63256025-63256044 | Msa0743130:CDS | 40.0% |
| !! | AAGCTGCAAGATTTGCTGTT+GGG | + | chr5_1:63256026-63256045 | Msa0743130:CDS | 40.0% |
| TTGCTAACAAACCCATCAGT+TGG | + | chr5_1:63256106-63256125 | Msa0743130:CDS | 40.0% | |
| AATCTTACTGGCCAACTGAT+GGG | - | chr5_1:63256120-63256139 | None:intergenic | 40.0% | |
| AAATCTTACTGGCCAACTGA+TGG | - | chr5_1:63256121-63256140 | None:intergenic | 40.0% | |
| ! | TGAGATTGGTGTCTTTGTCA+AGG | + | chr5_1:63256291-63256310 | Msa0743130:three_prime_UTR | 40.0% |
| ! | GAGATTGGTGTCTTTGTCAA+GGG | + | chr5_1:63256292-63256311 | Msa0743130:three_prime_UTR | 40.0% |
| ! | AGATTGGTGTCTTTGTCAAG+GGG | + | chr5_1:63256293-63256312 | Msa0743130:three_prime_UTR | 40.0% |
| ! | TCTCCGAGAATTTTCCATGG+CGG | + | chr5_1:63252951-63252970 | Msa0743130:exon | 45.0% |
| TCTCCGCCATGGAAAATTCT+CGG | - | chr5_1:63252957-63252976 | None:intergenic | 45.0% | |
| TATGGTAACAAAGGCTTCGC+TGG | - | chr5_1:63252985-63253004 | None:intergenic | 45.0% | |
| ATGCGATGGAAAGAGGATTG+AGG | + | chr5_1:63253157-63253176 | Msa0743130:CDS | 45.0% | |
| !! | GTTTTGGTGCGTTCACTTTG+TGG | - | chr5_1:63253186-63253205 | None:intergenic | 45.0% |
| ! | GAGAGAAACAAGAAGGGCAT+TGG | - | chr5_1:63253211-63253230 | None:intergenic | 45.0% |
| GTGCATGTTTAGTATCACCG+TGG | + | chr5_1:63253367-63253386 | Msa0743130:intron | 45.0% | |
| GTGATACCAAACATGCACTC+AGG | + | chr5_1:63253483-63253502 | Msa0743130:intron | 45.0% | |
| CAAACATGCACTCAGGTTTC+CGG | + | chr5_1:63253490-63253509 | Msa0743130:intron | 45.0% | |
| ATAGGAAACACTGCAGTCAG+CGG | - | chr5_1:63253883-63253902 | None:intergenic | 45.0% | |
| !! | GCTGTTTGATTTTCATCCGC+TGG | + | chr5_1:63253988-63254007 | Msa0743130:intron | 45.0% |
| AAGTCAGTGTATTGAGCCAG+CGG | - | chr5_1:63254007-63254026 | None:intergenic | 45.0% | |
| !! | ATTTCTGTTTCTGCTCCAGC+TGG | - | chr5_1:63254936-63254955 | None:intergenic | 45.0% |
| AAACTTCTGCTTCTGGTGCT+GGG | + | chr5_1:63255204-63255223 | Msa0743130:CDS | 45.0% | |
| GCAGATTCTGGTAGTTGACA+GGG | - | chr5_1:63255262-63255281 | None:intergenic | 45.0% | |
| TCGTTGAATTTAGGTGCAGG+AGG | - | chr5_1:63255293-63255312 | None:intergenic | 45.0% | |
| ! | GTGTCGTTGAATTTAGGTGC+AGG | - | chr5_1:63255296-63255315 | None:intergenic | 45.0% |
| TCTTGGGAAGGATAAACTCC+AGG | - | chr5_1:63255428-63255447 | None:intergenic | 45.0% | |
| TGATAATCCTGGGAAGATGG+AGG | - | chr5_1:63255461-63255480 | None:intergenic | 45.0% | |
| ! | TGGTGGGTGATGATAATCCT+GGG | - | chr5_1:63255471-63255490 | None:intergenic | 45.0% |
| TGGAGGAGGATGGTATTCTT+GGG | - | chr5_1:63255498-63255517 | None:intergenic | 45.0% | |
| TGGAGGAGGATGGTATTCTT+GGG | - | chr5_1:63255498-63255517 | None:intergenic | 45.0% | |
| TAATCTTGAGAAGGTGGAGG+AGG | - | chr5_1:63255593-63255612 | None:intergenic | 45.0% | |
| !! | GGGGGTTGATAATCTTGAGA+AGG | - | chr5_1:63255602-63255621 | None:intergenic | 45.0% |
| TGATGGTAATCTTGGGATGG+TGG | - | chr5_1:63255626-63255645 | None:intergenic | 45.0% | |
| TGGAGGCTGATGGTAATCTT+GGG | - | chr5_1:63255633-63255652 | None:intergenic | 45.0% | |
| AATGGGGAAGAGAGTAAGGA+GGG | - | chr5_1:63255760-63255779 | None:intergenic | 45.0% | |
| AAATGGGGAAGAGAGTAAGG+AGG | - | chr5_1:63255761-63255780 | None:intergenic | 45.0% | |
| ! | CGGGACCTTGATAATAAGTG+TGG | - | chr5_1:63255835-63255854 | None:intergenic | 45.0% |
| ! | TCTGCTGCTGGAACTGTTTT+GGG | - | chr5_1:63255912-63255931 | None:intergenic | 45.0% |
| ! | TTCTGCTGCTGGAACTGTTT+TGG | - | chr5_1:63255913-63255932 | None:intergenic | 45.0% |
| AACAGTTCCAGCAGCAGAAA+AGG | + | chr5_1:63255914-63255933 | Msa0743130:CDS | 45.0% | |
| !! | TATGTCGGAGTTGTTGGCTT+GGG | - | chr5_1:63255953-63255972 | None:intergenic | 45.0% |
| TACTGGTATGTCGGAGTTGT+TGG | - | chr5_1:63255959-63255978 | None:intergenic | 45.0% | |
| GCTGGTAACTACTGTCATAC+TGG | - | chr5_1:63255976-63255995 | None:intergenic | 45.0% | |
| ! | TCTGCTATTCTTTCAGGTGG+AGG | - | chr5_1:63255998-63256017 | None:intergenic | 45.0% |
| TCCACCTGAAAGAATAGCAG+AGG | + | chr5_1:63255997-63256016 | Msa0743130:CDS | 45.0% | |
| TGTGCCTCTGCTATTCTTTC+AGG | - | chr5_1:63256004-63256023 | None:intergenic | 45.0% | |
| !! | AGCTGCAAGATTTGCTGTTG+GGG | + | chr5_1:63256027-63256046 | Msa0743130:CDS | 45.0% |
| CGGAAACCTGAGTGCATGTT+TGG | - | chr5_1:63253492-63253511 | None:intergenic | 50.0% | |
| ! | GTGCTGTCAATCTGGGATAG+CGG | - | chr5_1:63254612-63254631 | None:intergenic | 50.0% |
| GAAAGAAGGAAGGAAGCCTG+TGG | + | chr5_1:63254993-63255012 | Msa0743130:CDS | 50.0% | |
| CAGTAGTCCCAATATCCTGC+AGG | - | chr5_1:63255184-63255203 | None:intergenic | 50.0% | |
| GAAACTTCTGCTTCTGGTGC+TGG | + | chr5_1:63255203-63255222 | Msa0743130:CDS | 50.0% | |
| GGCAGATTCTGGTAGTTGAC+AGG | - | chr5_1:63255263-63255282 | None:intergenic | 50.0% | |
| GAGGAATGCTTGGCAGATTC+TGG | - | chr5_1:63255274-63255293 | None:intergenic | 50.0% | |
| TTAGGTGCAGGAGGAATGCT+TGG | - | chr5_1:63255284-63255303 | None:intergenic | 50.0% | |
| TGGAGGAGGATGGTAGTCTT+GGG | - | chr5_1:63255444-63255463 | None:intergenic | 50.0% | |
| ATGGAGGAGGATGGTAGTCT+TGG | - | chr5_1:63255445-63255464 | None:intergenic | 50.0% | |
| TAATCCTGGGAAGATGGAGG+AGG | - | chr5_1:63255458-63255477 | None:intergenic | 50.0% | |
| !! | GTGGTGGGTGATGATAATCC+TGG | - | chr5_1:63255472-63255491 | None:intergenic | 50.0% |
| GGTATTCTTGGGAAGGTGGT+GGG | - | chr5_1:63255487-63255506 | None:intergenic | 50.0% | |
| TGGTATTCTTGGGAAGGTGG+TGG | - | chr5_1:63255488-63255507 | None:intergenic | 50.0% | |
| GGATGGTATTCTTGGGAAGG+TGG | - | chr5_1:63255491-63255510 | None:intergenic | 50.0% | |
| GGAGGATGGTATTCTTGGGA+AGG | - | chr5_1:63255494-63255513 | None:intergenic | 50.0% | |
| GTGGAGGAGGATGGTATTCT+TGG | - | chr5_1:63255499-63255518 | None:intergenic | 50.0% | |
| TATTCTTGGGAAGGTGGAGG+AGG | - | chr5_1:63255512-63255531 | None:intergenic | 50.0% | |
| TGGTATTCTTGGGAAGGTGG+AGG | - | chr5_1:63255488-63255507 | None:intergenic | 50.0% | |
| GGATGGTATTCTTGGGAAGG+TGG | - | chr5_1:63255491-63255510 | None:intergenic | 50.0% | |
| GGAGGATGGTATTCTTGGGA+AGG | - | chr5_1:63255494-63255513 | None:intergenic | 50.0% | |
| GTGGAGGAGGATGGTATTCT+TGG | - | chr5_1:63255499-63255518 | None:intergenic | 50.0% | |
| TAATCTTGGGAAGGTGGAGG+AGG | - | chr5_1:63255539-63255558 | None:intergenic | 50.0% | |
| TGGTAATCTTGGGAAGGTGG+AGG | - | chr5_1:63255542-63255561 | None:intergenic | 50.0% | |
| GGATGGTAATCTTGGGAAGG+TGG | - | chr5_1:63255545-63255564 | None:intergenic | 50.0% | |
| GGAGGATGGTAATCTTGGGA+AGG | - | chr5_1:63255548-63255567 | None:intergenic | 50.0% | |
| TGGCGGAGGATGGTAATCTT+GGG | - | chr5_1:63255552-63255571 | None:intergenic | 50.0% | |
| ! | ATGGCGGAGGATGGTAATCT+TGG | - | chr5_1:63255553-63255572 | None:intergenic | 50.0% |
| TGGTAATCCTGGGAAGATGG+CGG | - | chr5_1:63255569-63255588 | None:intergenic | 50.0% | |
| GGATGGTAATCCTGGGAAGA+TGG | - | chr5_1:63255572-63255591 | None:intergenic | 50.0% | |
| TGGAGGAGGATGGTAATCCT+GGG | - | chr5_1:63255579-63255598 | None:intergenic | 50.0% | |
| !! | TAATCTTGGGATGGTGGAGG+GGG | - | chr5_1:63255620-63255639 | None:intergenic | 50.0% |
| !! | GTAATCTTGGGATGGTGGAG+GGG | - | chr5_1:63255621-63255640 | None:intergenic | 50.0% |
| !! | GGTAATCTTGGGATGGTGGA+GGG | - | chr5_1:63255622-63255641 | None:intergenic | 50.0% |
| ! | TGGTAATCTTGGGATGGTGG+AGG | - | chr5_1:63255623-63255642 | None:intergenic | 50.0% |
| GGCTGATGGTAATCTTGGGA+TGG | - | chr5_1:63255629-63255648 | None:intergenic | 50.0% | |
| GTGGAGGCTGATGGTAATCT+TGG | - | chr5_1:63255634-63255653 | None:intergenic | 50.0% | |
| GAACTGTCTGATCTTGCAGG+TGG | - | chr5_1:63255653-63255672 | None:intergenic | 50.0% | |
| ATGGGGAAGAGAGTAAGGAG+GGG | - | chr5_1:63255759-63255778 | None:intergenic | 50.0% | |
| TACAGAAAGCAGCCTACCGT+CGG | + | chr5_1:63255799-63255818 | Msa0743130:CDS | 50.0% | |
| ! | GTGTGGTTTACTGGTACCGA+CGG | - | chr5_1:63255818-63255837 | None:intergenic | 50.0% |
| TGTAGTCAGAGGAGCTGACT+GGG | - | chr5_1:63255873-63255892 | None:intergenic | 50.0% | |
| TTGTAGTCAGAGGAGCTGAC+TGG | - | chr5_1:63255874-63255893 | None:intergenic | 50.0% | |
| ! | GACAGTACCTTTTCTGCTGC+TGG | - | chr5_1:63255924-63255943 | None:intergenic | 50.0% |
| !! | CAGCAGAAAAGGTACTGTCC+CGG | + | chr5_1:63255925-63255944 | Msa0743130:CDS | 50.0% |
| ! | GTATGTCGGAGTTGTTGGCT+TGG | - | chr5_1:63255954-63255973 | None:intergenic | 50.0% |
| ! | CTATTCTTTCAGGTGGAGGC+TGG | - | chr5_1:63255994-63256013 | None:intergenic | 50.0% |
| GCCTCTGCTATTCTTTCAGG+TGG | - | chr5_1:63256001-63256020 | None:intergenic | 50.0% | |
| !! | AAGATTTGCTGTTGGGGCAC+TGG | + | chr5_1:63256033-63256052 | Msa0743130:CDS | 50.0% |
| TCATCGGCGCGTTGAAGGTA+TGG | - | chr5_1:63253003-63253022 | None:intergenic | 55.0% | |
| GCAATTCATCGGCGCGTTGA+AGG | - | chr5_1:63253008-63253027 | None:intergenic | 55.0% | |
| GCAGACAAGCAAGATCGTGC+TGG | + | chr5_1:63254357-63254376 | Msa0743130:CDS | 55.0% | |
| GCTGTAGCCCTATTGCCTTG+CGG | + | chr5_1:63254574-63254593 | Msa0743130:intron | 55.0% | |
| ! | GGAGGATGGTAGTCTTGGGA+AGG | - | chr5_1:63255440-63255459 | None:intergenic | 55.0% |
| ! | TAATCCTGGGAAGATGGCGG+AGG | - | chr5_1:63255566-63255585 | None:intergenic | 55.0% |
| GTGGAGGAGGATGGTAATCC+TGG | - | chr5_1:63255580-63255599 | None:intergenic | 55.0% | |
| CTTGAGAAGGTGGAGGAGGA+TGG | - | chr5_1:63255589-63255608 | None:intergenic | 55.0% | |
| ATCTTGCAGGTGGAGGCTGA+TGG | - | chr5_1:63255643-63255662 | None:intergenic | 55.0% | |
| CTGTCTGATCTTGCAGGTGG+AGG | - | chr5_1:63255650-63255669 | None:intergenic | 55.0% | |
| GAGGGGGAGTTTCGTGAGAA+GGG | - | chr5_1:63255742-63255761 | None:intergenic | 55.0% | |
| TGGGGAAGAGAGTAAGGAGG+GGG | - | chr5_1:63255758-63255777 | None:intergenic | 55.0% | |
| !! | GGTTTACTGGTACCGACGGT+AGG | - | chr5_1:63255814-63255833 | None:intergenic | 55.0% |
| !! | GAGTTGTTGGCTTGGGTTCC+GGG | - | chr5_1:63255946-63255965 | None:intergenic | 55.0% |
| !! | GGAGTTGTTGGCTTGGGTTC+CGG | - | chr5_1:63255947-63255966 | None:intergenic | 55.0% |
| GAAGGAAGGAAGCCTGTGGC+TGG | + | chr5_1:63254997-63255016 | Msa0743130:CDS | 60.0% | |
| ACTAGGAGAGCTCGGCAGAG+CGG | - | chr5_1:63255049-63255068 | None:intergenic | 60.0% | |
| CCTGGGAAGATGGAGGAGGA+TGG | - | chr5_1:63255454-63255473 | None:intergenic | 60.0% | |
| CCATCCTCCTCCATCTTCCC+AGG | + | chr5_1:63255451-63255470 | Msa0743130:CDS | 60.0% | |
| CTTGGGAAGGTGGAGGAGGA+TGG | - | chr5_1:63255508-63255527 | None:intergenic | 60.0% | |
| CTTGGGAAGGTGGAGGAGGA+TGG | - | chr5_1:63255508-63255527 | None:intergenic | 60.0% | |
| GGAGGGGGAGTTTCGTGAGA+AGG | - | chr5_1:63255743-63255762 | None:intergenic | 60.0% | |
| !! | CGCTGGTTCGTTCTCCGCCA+TGG | - | chr5_1:63252968-63252987 | None:intergenic | 65.0% |
| GGTCCTCGTCACCAGCAGGT+GGG | - | chr5_1:63255023-63255042 | None:intergenic | 65.0% | |
| AGGTCCTCGTCACCAGCAGG+TGG | - | chr5_1:63255024-63255043 | None:intergenic | 65.0% | |
| GACAGGTCCTCGTCACCAGC+AGG | - | chr5_1:63255027-63255046 | None:intergenic | 65.0% | |
| !! | CCTGGGAAGATGGCGGAGGA+TGG | - | chr5_1:63255562-63255581 | None:intergenic | 65.0% |
| CCATCCTCCGCCATCTTCCC+AGG | + | chr5_1:63255559-63255578 | Msa0743130:CDS | 65.0% | |
| ! | TGGCCCACCTGCTGGTGACG+AGG | + | chr5_1:63255017-63255036 | Msa0743130:CDS | 70.0% |
| GAGAGCTCGGCAGAGCGGAC+AGG | - | chr5_1:63255044-63255063 | None:intergenic | 70.0% | |
| CCAGCAGGTGGGCCAGCCAC+AGG | - | chr5_1:63255012-63255031 | None:intergenic | 75.0% | |
| ! | CCTGTGGCTGGCCCACCTGC+TGG | + | chr5_1:63255009-63255028 | Msa0743130:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 63252902 | 63256351 | 63252902 | ID=Msa0743130;Name=Msa0743130 |
| chr5_1 | mRNA | 63252902 | 63256351 | 63252902 | ID=Msa0743130-mRNA-1;Parent=Msa0743130;Name=Msa0743130-mRNA-1;_AED=0.05;_eAED=0.05;_QI=65|1|1|1|0.83|0.71|7|191|488 |
| chr5_1 | exon | 63252902 | 63253057 | 63252902 | ID=Msa0743130-mRNA-1:exon:18611;Parent=Msa0743130-mRNA-1 |
| chr5_1 | exon | 63253148 | 63253248 | 63253148 | ID=Msa0743130-mRNA-1:exon:18612;Parent=Msa0743130-mRNA-1 |
| chr5_1 | exon | 63254282 | 63254391 | 63254282 | ID=Msa0743130-mRNA-1:exon:18613;Parent=Msa0743130-mRNA-1 |
| chr5_1 | exon | 63254715 | 63254790 | 63254715 | ID=Msa0743130-mRNA-1:exon:18614;Parent=Msa0743130-mRNA-1 |
| chr5_1 | exon | 63254937 | 63255077 | 63254937 | ID=Msa0743130-mRNA-1:exon:18615;Parent=Msa0743130-mRNA-1 |
| chr5_1 | exon | 63255188 | 63256253 | 63255188 | ID=Msa0743130-mRNA-1:exon:18616;Parent=Msa0743130-mRNA-1 |
| chr5_1 | exon | 63256279 | 63256351 | 63256279 | ID=Msa0743130-mRNA-1:exon:18617;Parent=Msa0743130-mRNA-1 |
| chr5_1 | five_prime_UTR | 63252902 | 63252966 | 63252902 | ID=Msa0743130-mRNA-1:five_prime_utr;Parent=Msa0743130-mRNA-1 |
| chr5_1 | CDS | 63252967 | 63253057 | 63252967 | ID=Msa0743130-mRNA-1:cds;Parent=Msa0743130-mRNA-1 |
| chr5_1 | CDS | 63253148 | 63253248 | 63253148 | ID=Msa0743130-mRNA-1:cds;Parent=Msa0743130-mRNA-1 |
| chr5_1 | CDS | 63254282 | 63254391 | 63254282 | ID=Msa0743130-mRNA-1:cds;Parent=Msa0743130-mRNA-1 |
| chr5_1 | CDS | 63254715 | 63254790 | 63254715 | ID=Msa0743130-mRNA-1:cds;Parent=Msa0743130-mRNA-1 |
| chr5_1 | CDS | 63254937 | 63255077 | 63254937 | ID=Msa0743130-mRNA-1:cds;Parent=Msa0743130-mRNA-1 |
| chr5_1 | CDS | 63255188 | 63256135 | 63255188 | ID=Msa0743130-mRNA-1:cds;Parent=Msa0743130-mRNA-1 |
| chr5_1 | three_prime_UTR | 63256136 | 63256253 | 63256136 | ID=Msa0743130-mRNA-1:three_prime_utr;Parent=Msa0743130-mRNA-1 |
| chr5_1 | three_prime_UTR | 63256279 | 63256351 | 63256279 | ID=Msa0743130-mRNA-1:three_prime_utr;Parent=Msa0743130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
