AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0175540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0175540 MtrunA17_Chr1g0196541 96.170 731 28 0 56 786 1 731 0.0 1487
Msa0175540 MtrunA17_Chr2g0296781 66.094 699 229 3 56 748 1 697 0.0 949
Msa0175540 MtrunA17_Chr6g0477261 67.517 588 183 3 167 748 1 586 0.0 804
Msa0175540 MtrunA17_Chr5g0441581 42.320 612 331 8 47 646 23 624 2.24e-166 497
Msa0175540 MtrunA17_Chr2g0291581 36.219 566 342 8 52 612 71 622 4.34e-116 366
Msa0175540 MtrunA17_Chr1g0207551 34.201 576 353 8 49 613 31 591 1.04e-107 348
Msa0175540 MtrunA17_Chr1g0202341 34.321 574 352 11 51 612 50 610 6.90e-103 332
Msa0175540 MtrunA17_Chr3g0080351 33.223 602 351 6 51 631 75 646 9.41e-102 333
Msa0175540 MtrunA17_Chr2g0329031 31.614 601 382 10 41 631 3 584 7.05e-101 328
Msa0175540 MtrunA17_Chr5g0448761 33.904 584 366 12 49 619 57 633 1.49e-99 325
Msa0175540 MtrunA17_Chr2g0291591 31.791 497 322 3 51 545 63 544 1.03e-88 291
Msa0175540 MtrunA17_Chr5g0440451 30.268 598 371 14 51 624 42 617 1.65e-80 277
Msa0175540 MtrunA17_Chr5g0448511 33.820 411 264 5 213 622 5 408 3.11e-79 265
Msa0175540 MtrunA17_Chr3g0118611 34.848 396 248 5 217 611 115 501 3.16e-76 262
Msa0175540 MtrunA17_Chr8g0363841 29.153 590 395 11 48 623 10 590 3.59e-69 241
Msa0175540 MtrunA17_Chr2g0287061 30.175 570 333 17 51 608 182 698 8.18e-68 239
Msa0175540 MtrunA17_Chr2g0324011 27.210 577 385 12 49 608 7 565 1.28e-67 234
Msa0175540 MtrunA17_Chr6g0476441 63.235 204 67 3 551 748 1 202 6.36e-67 223
Msa0175540 MtrunA17_Chr2g0287651 25.758 660 462 11 26 670 51 697 1.30e-64 231
Msa0175540 MtrunA17_Chr1g0198761 28.174 575 377 13 55 608 50 609 1.45e-60 218
Msa0175540 MtrunA17_Chr1g0203721 25.618 566 398 8 55 608 66 620 8.64e-59 215
Msa0175540 MtrunA17_Chr6g0458391 25.620 605 403 15 19 608 190 762 8.62e-56 205
Msa0175540 MtrunA17_Chr1g0203051 26.582 553 367 14 58 592 85 616 5.36e-53 195
Msa0175540 MtrunA17_Chr3g0082121 27.826 575 373 17 49 608 40 587 5.63e-53 196
Msa0175540 MtrunA17_Chr2g0276841 25.301 581 386 14 52 608 70 626 6.94e-50 187
Msa0175540 MtrunA17_Chr2g0294841 23.179 755 486 23 52 752 45 759 6.38e-45 173
Msa0175540 MtrunA17_Chr5g0431001 27.021 433 278 12 52 457 61 482 2.41e-39 152
Msa0175540 MtrunA17_Chr2g0290391 24.570 582 392 14 52 608 51 610 3.40e-39 155
Msa0175540 MtrunA17_Chr1g0164591 33.333 231 151 3 211 439 79 308 2.71e-38 145
Msa0175540 MtrunA17_Chr7g0258861 28.269 283 196 4 49 324 7 289 3.83e-31 124
Msa0175540 MtrunA17_Chr6g0476431 56.977 86 37 0 56 141 1 86 3.11e-27 105
Msa0175540 MtrunA17_Chr2g0308841 24.454 229 166 4 383 610 4 226 1.21e-16 80.9
Msa0175540 MtrunA17_Chr1g0172041 35.354 99 63 1 523 621 1 98 2.17e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0175540 AT4G15090.1 33.026 651 401 11 49 680 48 682 8.09e-113 362
Msa0175540 AT4G15090.5 33.026 651 401 11 49 680 48 682 8.09e-113 362
Msa0175540 AT4G15090.3 33.026 651 401 11 49 680 48 682 8.09e-113 362
Msa0175540 AT4G15090.2 33.026 651 401 11 49 680 48 682 8.09e-113 362
Msa0175540 AT4G15090.4 33.026 651 401 11 49 680 48 682 8.09e-113 362
Msa0175540 AT3G22170.2 31.981 616 362 8 26 614 36 621 1.56e-101 332
Msa0175540 AT3G22170.1 31.981 616 362 8 26 614 36 621 1.56e-101 332
Msa0175540 AT1G52520.1 33.391 581 364 12 42 612 72 639 2.60e-100 326
Msa0175540 AT4G38180.1 32.168 572 372 8 49 611 70 634 7.61e-98 322
Msa0175540 AT1G76320.3 32.292 576 352 12 56 618 1 551 2.83e-94 309
Msa0175540 AT1G76320.1 32.118 576 353 11 56 618 1 551 7.99e-94 309
Msa0175540 AT1G76320.4 32.118 576 353 11 56 618 1 551 7.99e-94 309
Msa0175540 AT1G76320.2 32.118 576 353 11 56 618 1 551 8.04e-94 309
Msa0175540 AT1G80010.1 32.988 579 365 11 52 615 95 665 1.30e-91 303
Msa0175540 AT4G19990.3 33.105 583 327 11 55 616 24 564 3.95e-89 297
Msa0175540 AT4G19990.4 33.105 583 327 11 55 616 24 564 3.95e-89 297
Msa0175540 AT4G19990.6 33.105 583 327 11 55 616 24 564 7.22e-89 297
Msa0175540 AT4G19990.2 33.105 583 327 11 55 616 24 564 7.22e-89 297
Msa0175540 AT4G19990.5 33.105 583 327 11 55 616 24 564 7.25e-89 296
Msa0175540 AT4G19990.7 33.105 583 327 11 55 616 38 578 9.05e-89 296
Msa0175540 AT2G32250.5 31.261 563 333 7 51 608 37 550 1.06e-88 296
Msa0175540 AT2G32250.6 31.261 563 333 7 51 608 37 550 3.96e-88 296
Msa0175540 AT2G32250.1 31.261 563 333 7 51 608 37 550 3.96e-88 296
Msa0175540 AT2G32250.3 31.261 563 333 7 51 608 37 550 3.96e-88 296
Msa0175540 AT2G32250.2 31.261 563 333 7 51 608 37 550 4.00e-88 296
Msa0175540 AT2G32250.4 31.261 563 333 7 51 608 37 550 4.00e-88 296
Msa0175540 AT2G32250.8 31.004 558 331 7 56 608 1 509 1.72e-86 290
Msa0175540 AT2G32250.7 31.004 558 331 7 56 608 1 509 1.90e-86 290
Msa0175540 AT4G19990.1 34.592 503 285 9 117 616 46 507 9.22e-85 284
Msa0175540 AT2G27110.2 30.390 589 370 15 51 631 48 604 1.44e-76 265
Msa0175540 AT2G27110.1 30.390 589 370 15 51 631 48 604 1.44e-76 265
Msa0175540 AT2G27110.3 32.068 474 296 10 166 631 4 459 1.83e-73 254
Msa0175540 AT5G18960.2 29.610 564 343 16 51 608 210 725 2.21e-69 244
Msa0175540 AT5G18960.1 29.610 564 343 16 51 608 210 725 2.21e-69 244
Msa0175540 AT3G06250.2 28.419 563 348 16 51 608 189 701 4.83e-67 237
Msa0175540 AT3G06250.1 28.419 563 348 16 51 608 189 701 4.83e-67 237
Msa0175540 AT3G06250.3 28.419 563 348 16 51 608 189 701 4.83e-67 237
Msa0175540 AT4G38170.1 30.808 396 262 5 222 615 18 403 8.57e-67 231
Msa0175540 AT1G10240.2 26.334 581 380 16 52 608 48 604 4.29e-50 187
Msa0175540 AT1G10240.1 26.334 581 380 16 52 608 48 604 4.29e-50 187
Msa0175540 AT5G28530.3 24.873 591 379 18 52 608 55 614 1.91e-40 159
Msa0175540 AT5G28530.2 24.873 591 379 18 52 608 55 614 1.91e-40 159
Msa0175540 AT5G28530.1 24.621 593 382 18 52 608 55 618 1.88e-39 156
Msa0175540 AT5G28530.5 23.183 578 342 19 52 608 55 551 1.05e-26 116
Msa0175540 AT5G28530.4 22.931 580 345 19 52 608 55 555 1.03e-25 113

Find 143 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATATACAAAATTTATTT+TGG 0.073660 1_4:-61505192 Msa0175540:CDS
TGGCAATGGTAAATGCTTTC+TGG 0.145575 1_4:+61504429 None:intergenic
TACTTGAAATTCTTTAAATT+TGG 0.164119 1_4:+61504409 None:intergenic
GAGTATTTACCCAACATTTC+TGG 0.181169 1_4:+61504839 None:intergenic
AATTAAAGACGTGGTGTTTA+AGG 0.198475 1_4:-61504288 Msa0175540:CDS
TGTTGCTTATTTGAGTTTAA+AGG 0.212760 1_4:-61504227 Msa0175540:CDS
TCTAGATTTATCTACTTAAA+TGG 0.232469 1_4:+61503204 None:intergenic
TGTATGTGAAAGACACATTT+TGG 0.241766 1_4:-61504655 Msa0175540:CDS
ATTGCTTGTGTGAGTCATTT+TGG 0.243877 1_4:-61504467 Msa0175540:CDS
CATTCGTCTGAAGAAGAATT+AGG 0.251158 1_4:+61506069 None:intergenic
ATGATAATGAATGGTTAAAA+TGG 0.261144 1_4:-61504709 Msa0175540:CDS
TACGCTAATCGTGTAGGTTT+TGG 0.267234 1_4:-61505727 Msa0175540:CDS
AGAATTGCAACGTGTTAATA+TGG 0.267882 1_4:-61504072 Msa0175540:CDS
GTTCAGAACAGGAAATATTC+TGG 0.287164 1_4:+61503448 None:intergenic
AGTAGAAGCAACTTCATAAA+AGG 0.295990 1_4:+61504040 None:intergenic
CTAAATGTCATCCCAGTTCT+AGG 0.302654 1_4:+61505784 None:intergenic
GGTCTGAAGAAGAAGTTATT+AGG 0.310139 1_4:-61505762 Msa0175540:CDS
TAATACTAGCTTTGAAAGAT+TGG 0.313945 1_4:-61504363 Msa0175540:CDS
TTTATGATTTGAGGACAATA+TGG 0.324306 1_4:+61503471 None:intergenic
TCTGAGCAAAAGTGATTTCA+TGG 0.327773 1_4:-61504768 Msa0175540:CDS
AGGGCTGCATATGAATATTT+TGG 0.330794 1_4:-61505154 Msa0175540:CDS
TTCAATAACAATTCTTGAAA+TGG 0.335352 1_4:+61505528 None:intergenic
TGGTAAATGCTTTCTGGAAA+TGG 0.337237 1_4:+61504435 None:intergenic
CTAGAACTGGGATGACATTT+AGG 0.343463 1_4:-61505783 Msa0175540:CDS
CACCATCGATGACGAGCTTT+AGG 0.352465 1_4:+61504887 None:intergenic
AGGATGGTTGATCATTCTTA+TGG 0.354581 1_4:+61503323 None:intergenic
TTTAGATTGGATGAGAGTTC+GGG 0.356799 1_4:-61505469 Msa0175540:CDS
CAATGGATATGGATGATAAA+AGG 0.357213 1_4:-61505213 Msa0175540:CDS
AATGCTTGTGTAGCTTTAGA+TGG 0.358270 1_4:-61505559 Msa0175540:CDS
TCTTCGGTAATTATGCCATT+TGG 0.360910 1_4:+61504947 None:intergenic
CTTTGTGTGCTTAAGCTCAT+TGG 0.361479 1_4:-61504185 Msa0175540:CDS
TCATCAGTTTCTTGAAGAAT+AGG 0.369535 1_4:+61503611 None:intergenic
ATGGGCATCCTCTTTCAAAA+AGG 0.374223 1_4:-61503857 Msa0175540:CDS
TTAATCGTATTGAAACTTGT+AGG 0.381649 1_4:-61503152 Msa0175540:three_prime_UTR
TTTCATTGCTTTATCATCTT+CGG 0.384250 1_4:+61504931 None:intergenic
TAAGGTATGTTTCAATGAAA+AGG 0.385210 1_4:-61504270 Msa0175540:CDS
TGATGGTTCACTCCAACAAC+GGG 0.387452 1_4:+61505073 None:intergenic
ATTTGATGAGCGGCACCGTT+GGG 0.394490 1_4:-61504684 Msa0175540:CDS
GGGTGTGGGAATCTTACTTC+TGG 0.395908 1_4:-61505358 Msa0175540:CDS
GAAGATGAAGAACCTAGAAC+TGG 0.406519 1_4:-61505796 Msa0175540:CDS
TTGCCATTGGTCCCCGTTGT+TGG 0.408860 1_4:-61505085 Msa0175540:CDS
ATTTACAGAAAGTGATGAAC+AGG 0.427795 1_4:-61503998 Msa0175540:CDS
ATACTTATTTGTTAAATAAG+TGG 0.431247 1_4:+61505111 None:intergenic
CAACTGTAACTCTCAGTAAT+GGG 0.432520 1_4:-61503875 Msa0175540:CDS
ACAATCCTAGTCACGTGGTT+TGG 0.434005 1_4:+61503903 None:intergenic
TTTACACTTATAATAGCATT+GGG 0.440864 1_4:-61503026 Msa0175540:three_prime_UTR
ATATTCTGGTTTATGATTTG+AGG 0.444118 1_4:+61503462 None:intergenic
ATTCGTCTGAAGAAGAATTA+GGG 0.449311 1_4:+61506070 None:intergenic
AGAGTGTTAAATGTAAAGAT+AGG 0.452463 1_4:+61503116 None:intergenic
ATTTACACTTATAATAGCAT+TGG 0.452863 1_4:-61503027 Msa0175540:three_prime_UTR
GACAACATTGAAGCGGTTTG+TGG 0.452916 1_4:-61504564 Msa0175540:CDS
TATTTGATGAGCGGCACCGT+TGG 0.456287 1_4:-61504685 Msa0175540:CDS
AAGTAAGACGGCTAAGACTT+GGG 0.460155 1_4:-61505306 Msa0175540:CDS
TACCTGTAAAAGTTCAGAAC+AGG 0.463097 1_4:+61503437 None:intergenic
GAAGAAGGTTCCAGAAATGT+TGG 0.468659 1_4:-61504849 Msa0175540:CDS
TGGATGCTAAAACTCTTACT+TGG 0.470376 1_4:-61505009 Msa0175540:CDS
AAAGTAAGACGGCTAAGACT+TGG 0.482575 1_4:-61505307 Msa0175540:CDS
TTTGGGCAGATGCGAGATGT+AGG 0.483477 1_4:-61505174 Msa0175540:CDS
GGTCTATGTCTTTACGAGGA+TGG 0.493066 1_4:+61503307 None:intergenic
CCAACTGTAACTCTCAGTAA+TGG 0.495315 1_4:-61503876 Msa0175540:CDS
TTAACCATTCATTATCATGT+AGG 0.496964 1_4:+61504714 None:intergenic
CAATCTAAAATACCGTCCTC+TGG 0.503024 1_4:+61505483 None:intergenic
AGTATGTTCTTGTGTAATCC+TGG 0.507755 1_4:+61503932 None:intergenic
GGTGTTGAGATGAATGGGTG+TGG 0.508197 1_4:-61505373 Msa0175540:CDS
TACTAGCTTTGAAAGATTGG+AGG 0.508243 1_4:-61504360 Msa0175540:CDS
ACATAGACCAACCACTACTC+TGG 0.508434 1_4:-61503293 Msa0175540:three_prime_UTR
AAGAAGGTTCCAGAAATGTT+GGG 0.510364 1_4:-61504848 Msa0175540:CDS
CAACTCCAAACCACGTGACT+AGG 0.513724 1_4:-61503908 Msa0175540:CDS
GAGGTAAGATATTGCTTCGA+AGG 0.514633 1_4:+61505607 None:intergenic
ATGATGGTTCACTCCAACAA+CGG 0.516650 1_4:+61505072 None:intergenic
CTGTGGGTGTTGAGATGAAT+GGG 0.521887 1_4:-61505378 Msa0175540:CDS
AAGTGATTTCATGGAGAGGT+GGG 0.523064 1_4:-61504759 Msa0175540:CDS
ATTGAATGATAAAATCGAAA+AGG 0.526317 1_4:-61504525 Msa0175540:CDS
GATCAAGGTGGGATTAATGT+TGG 0.526517 1_4:-61505415 Msa0175540:CDS
AAATTCTTTAAATTTGGCAA+TGG 0.528148 1_4:+61504415 None:intergenic
ATTGAACATAATCATGAACT+TGG 0.529122 1_4:-61505511 Msa0175540:CDS
TTACTTGGTTGTTCACAAGA+TGG 0.537284 1_4:-61504994 Msa0175540:CDS
TTCCTAAAGCTCGTCATCGA+TGG 0.537412 1_4:-61504889 Msa0175540:CDS
TTGGGCAGATGCGAGATGTA+GGG 0.538615 1_4:-61505173 Msa0175540:CDS
ATAACCTACATGATAATGAA+TGG 0.540605 1_4:-61504718 Msa0175540:CDS
ATTTAAAGAATTTCAAGTAG+AGG 0.542601 1_4:-61504405 Msa0175540:CDS
AATTCAGAACTTAATGATCA+AGG 0.544624 1_4:-61505430 Msa0175540:CDS
CTTGTGGCATATAATGAAGA+AGG 0.550485 1_4:-61504864 Msa0175540:CDS
ATGACAGCAATGTAAATACA+AGG 0.553033 1_4:-61503090 Msa0175540:three_prime_UTR
ATAAAATAGTCTGACCATGA+TGG 0.558886 1_4:+61505056 None:intergenic
AAAGTGATTTCATGGAGAGG+TGG 0.559223 1_4:-61504760 Msa0175540:CDS
CTTCTAAAGAGCCATCCTCC+AGG 0.560777 1_4:-61503950 Msa0175540:CDS
GAAAGTGATGAACAGGATCA+AGG 0.562243 1_4:-61503991 Msa0175540:CDS
TCTGTGGGTGTTGAGATGAA+TGG 0.568290 1_4:-61505379 Msa0175540:CDS
TACCTCGAAAACACAGTGTA+GGG 0.568827 1_4:-61505590 Msa0175540:CDS
TTACCTCGAAAACACAGTGT+AGG 0.570982 1_4:-61505591 Msa0175540:CDS
ATGAATTACGCTAATCGTGT+AGG 0.573095 1_4:-61505733 Msa0175540:CDS
GTGTTGAGATGAATGGGTGT+GGG 0.575538 1_4:-61505372 Msa0175540:CDS
ATGCATGGACATGCTCCAAA+TGG 0.577612 1_4:-61504962 Msa0175540:CDS
ACTCCAACAACGGGGACCAA+TGG 0.579058 1_4:+61505082 None:intergenic
TAAAATGGTTATTTGATGAG+CGG 0.580254 1_4:-61504694 Msa0175540:CDS
GTTGTTGGAGTGAACCATCA+TGG 0.580693 1_4:-61505070 Msa0175540:CDS
AAATAAGTATGACTTGCCAT+TGG 0.582213 1_4:-61505098 Msa0175540:CDS
ACTCAAAGACAACATTGAAG+CGG 0.582318 1_4:-61504571 Msa0175540:CDS
AAACGATCAAAGTCAAGAAG+AGG 0.583429 1_4:-61503757 Msa0175540:intron
CAGAACTTAATGATCAAGGT+GGG 0.583962 1_4:-61505426 Msa0175540:CDS
AGATATACATTGATGAAACA+TGG 0.592243 1_4:-61504101 Msa0175540:CDS
CTCGTCATCGATGGTGCTTG+TGG 0.597557 1_4:-61504880 Msa0175540:CDS
ACATCTTAGTGATGTAAACC+AGG 0.599828 1_4:-61503582 Msa0175540:intron
TAGCATGTAATTGTGCAAGA+AGG 0.600918 1_4:-61505651 Msa0175540:CDS
AGACGGCTAAGACTTGGGAG+AGG 0.601064 1_4:-61505301 Msa0175540:CDS
GGTAGAAATCTTCAATCTGT+GGG 0.601916 1_4:-61505394 Msa0175540:CDS
TAAAATCGAAAAGGAAAGCA+TGG 0.602750 1_4:-61504516 Msa0175540:CDS
AACCACCATGTCCAGAGTAG+TGG 0.606476 1_4:+61503282 None:intergenic
CCATTACTGAGAGTTACAGT+TGG 0.609550 1_4:+61503876 None:intergenic
AATGTGTCTTTCACATACAC+AGG 0.609838 1_4:+61504659 None:intergenic
CGAAAACACAGTGTAGGGCT+AGG 0.611004 1_4:-61505585 Msa0175540:CDS
TCTTGTGTAATCCTGGAGGA+TGG 0.617853 1_4:+61503939 None:intergenic
ATAGCTGCTGTTAAACAAAG+TGG 0.623526 1_4:-61503259 Msa0175540:three_prime_UTR
ACCAACCACTACTCTGGACA+TGG 0.633901 1_4:-61503287 Msa0175540:three_prime_UTR
AGATGGTTAGAATGTATGCA+TGG 0.634404 1_4:-61504977 Msa0175540:CDS
TGGTAGAAATCTTCAATCTG+TGG 0.643326 1_4:-61505395 Msa0175540:CDS
ATTCTGTGCAGAAAGTAAGA+CGG 0.644927 1_4:-61505318 Msa0175540:CDS
GTTCGGGGACTCATGTAGAG+AGG 0.649720 1_4:-61505453 Msa0175540:CDS
AACTTGGTCAAACCAGAGGA+CGG 0.650612 1_4:-61505495 Msa0175540:CDS
ACCATGTCCAGAGTAGTGGT+TGG 0.651376 1_4:+61503286 None:intergenic
AAGATGAAGAACCTAGAACT+GGG 0.654596 1_4:-61505795 Msa0175540:CDS
AGTGATTTCATGGAGAGGTG+GGG 0.655787 1_4:-61504758 Msa0175540:CDS
CAAAACTCCAAAGAACAGCA+AGG 0.655801 1_4:-61503787 Msa0175540:CDS
GGTTGGTCTATGTCTTTACG+AGG 0.660233 1_4:+61503303 None:intergenic
TCAGAACTTAATGATCAAGG+TGG 0.664170 1_4:-61505427 Msa0175540:CDS
TGGCTCTTTAGAAGATAACA+CGG 0.664729 1_4:+61503959 None:intergenic
AACCACTACTCTGGACATGG+TGG 0.671470 1_4:-61503284 Msa0175540:three_prime_UTR
TTAGATTGGATGAGAGTTCG+GGG 0.678804 1_4:-61505468 Msa0175540:CDS
TCACATACACAGGAACCCAA+CGG 0.679348 1_4:+61504669 None:intergenic
TGACAGCAATGTAAATACAA+GGG 0.682683 1_4:-61503089 Msa0175540:three_prime_UTR
TCGATGACGAGCTTTAGGAA+AGG 0.682769 1_4:+61504892 None:intergenic
AAAAGAGAAAATTAAAGACG+TGG 0.683650 1_4:-61504297 Msa0175540:CDS
GCAAAAGTGATTTCATGGAG+AGG 0.684724 1_4:-61504763 Msa0175540:CDS
GTGTGCAATATTGTCGAACG+TGG 0.685729 1_4:-61505029 Msa0175540:CDS
CTGGAATGTCGACTGCACAA+CGG 0.692769 1_4:-61504631 Msa0175540:CDS
CATGAACTTGGTCAAACCAG+AGG 0.694396 1_4:-61505499 Msa0175540:CDS
GGTGGAGGAAGTATGTAAAG+CGG 0.705310 1_4:-61504124 Msa0175540:CDS
GATCAACAATCCTAGTCACG+TGG 0.707154 1_4:+61503898 None:intergenic
TTTACATACTTCCTCCACCG+TGG 0.708646 1_4:+61504128 None:intergenic
AATCGAAAAGGAAAGCATGG+CGG 0.726163 1_4:-61504513 Msa0175540:CDS
ATGTTCTTGTGTAATCCTGG+AGG 0.762199 1_4:+61503935 None:intergenic
GATGGTTCACTCCAACAACG+GGG 0.773003 1_4:+61505074 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATTTATTGTATTTAG+TGG - chr1_4:61503183-61503202 Msa0175540:three_prime_UTR 10.0%
!!! GAATATACAAAATTTATTTT+GGG - chr1_4:61503900-61503919 Msa0175540:CDS 10.0%
!!! GGAATATACAAAATTTATTT+TGG - chr1_4:61503899-61503918 Msa0175540:CDS 15.0%
!!! ATACTTATTTGTTAAATAAG+TGG + chr1_4:61503983-61504002 None:intergenic 15.0%
!! TACTTGAAATTCTTTAAATT+TGG + chr1_4:61504685-61504704 None:intergenic 15.0%
!! AAATAGAGAAAATAAATTTG+TGG + chr1_4:61505372-61505391 None:intergenic 15.0%
!!! ATAAATAAATGTCTGATTTT+GGG - chr1_4:61505429-61505448 Msa0175540:CDS 15.0%
!!! ATTTATTTGATTATTTCTTG+TGG - chr1_4:61505676-61505695 Msa0175540:CDS 15.0%
!! TTCAATAACAATTCTTGAAA+TGG + chr1_4:61503566-61503585 None:intergenic 20.0%
!!! ATGATAATGAATGGTTAAAA+TGG - chr1_4:61504382-61504401 Msa0175540:CDS 20.0%
!! ATTGAATGATAAAATCGAAA+AGG - chr1_4:61504566-61504585 Msa0175540:CDS 20.0%
!! AAATTCTTTAAATTTGGCAA+TGG + chr1_4:61504679-61504698 None:intergenic 20.0%
!!! ATTTAAAGAATTTCAAGTAG+AGG - chr1_4:61504686-61504705 Msa0175540:CDS 20.0%
!!! CATAAATAAATGTCTGATTT+TGG - chr1_4:61505428-61505447 Msa0175540:CDS 20.0%
!! TTATTTGAACATTTACATTG+TGG - chr1_4:61505565-61505584 Msa0175540:CDS 20.0%
!! TCTAGATTTATCTACTTAAA+TGG + chr1_4:61505890-61505909 None:intergenic 20.0%
!! ATTTACACTTATAATAGCAT+TGG - chr1_4:61506064-61506083 Msa0175540:CDS 20.0%
!! TTTACACTTATAATAGCATT+GGG - chr1_4:61506065-61506084 Msa0175540:CDS 20.0%
!! TTTTGTCTCTTATGATATGA+AGG + chr1_4:61503091-61503110 None:intergenic 25.0%
! ATTGAACATAATCATGAACT+TGG - chr1_4:61503580-61503599 Msa0175540:intron 25.0%
! AATTCAGAACTTAATGATCA+AGG - chr1_4:61503661-61503680 Msa0175540:intron 25.0%
!! TAGTCAATTTTATTGTGCAA+TGG - chr1_4:61503861-61503880 Msa0175540:CDS 25.0%
!! ATTTTATTGTGCAATGGATA+TGG - chr1_4:61503867-61503886 Msa0175540:CDS 25.0%
! TTTCATTGCTTTATCATCTT+CGG + chr1_4:61504163-61504182 None:intergenic 25.0%
!! ATAACCTACATGATAATGAA+TGG - chr1_4:61504373-61504392 Msa0175540:CDS 25.0%
! TTAACCATTCATTATCATGT+AGG + chr1_4:61504380-61504399 None:intergenic 25.0%
! TAAAATGGTTATTTGATGAG+CGG - chr1_4:61504397-61504416 Msa0175540:CDS 25.0%
!!! AGTATAGACTCATTTTTTGA+TGG - chr1_4:61504489-61504508 Msa0175540:CDS 25.0%
!!! GTATAGACTCATTTTTTGAT+GGG - chr1_4:61504490-61504509 Msa0175540:CDS 25.0%
!!! TAATACTAGCTTTGAAAGAT+TGG - chr1_4:61504728-61504747 Msa0175540:CDS 25.0%
! AAAAGAGAAAATTAAAGACG+TGG - chr1_4:61504794-61504813 Msa0175540:CDS 25.0%
! TAAGGTATGTTTCAATGAAA+AGG - chr1_4:61504821-61504840 Msa0175540:CDS 25.0%
!! TGTTGCTTATTTGAGTTTAA+AGG - chr1_4:61504864-61504883 Msa0175540:CDS 25.0%
! AGATATACATTGATGAAACA+TGG - chr1_4:61504990-61505009 Msa0175540:CDS 25.0%
!!! AAATAAAAATAAAGAGCACC+AGG + chr1_4:61505551-61505570 None:intergenic 25.0%
! TTTATGATTTGAGGACAATA+TGG + chr1_4:61505623-61505642 None:intergenic 25.0%
!!! ATATTCTGGTTTATGATTTG+AGG + chr1_4:61505632-61505651 None:intergenic 25.0%
! TTAATCGTATTGAAACTTGT+AGG - chr1_4:61505939-61505958 Msa0175540:intron 25.0%
!! AGAGTGTTAAATGTAAAGAT+AGG + chr1_4:61505978-61505997 None:intergenic 25.0%
ATTCGTCTGAAGAAGAATTA+GGG + chr1_4:61503024-61503043 None:intergenic 30.0%
AGTTCAAAAAATGCAGATGA+TGG - chr1_4:61503400-61503419 Msa0175540:intron 30.0%
! TTTTAGATTGGATGAGAGTT+CGG - chr1_4:61503621-61503640 Msa0175540:CDS 30.0%
CAATGGATATGGATGATAAA+AGG - chr1_4:61503878-61503897 Msa0175540:CDS 30.0%
! TTTTGGTGAAGTCATAACTT+TGG - chr1_4:61503954-61503973 Msa0175540:CDS 30.0%
! AAATAAGTATGACTTGCCAT+TGG - chr1_4:61503993-61504012 Msa0175540:CDS 30.0%
ATAAAATAGTCTGACCATGA+TGG + chr1_4:61504038-61504057 None:intergenic 30.0%
! TCATGGTCAGACTATTTTAT+TGG - chr1_4:61504038-61504057 Msa0175540:CDS 30.0%
! CATGGTCAGACTATTTTATT+GGG - chr1_4:61504039-61504058 Msa0175540:CDS 30.0%
! ATGGTCAGACTATTTTATTG+GGG - chr1_4:61504040-61504059 Msa0175540:CDS 30.0%
AGCAATGAAAAATGCAATTG+AGG - chr1_4:61504173-61504192 Msa0175540:CDS 30.0%
! TGTATGTGAAAGACACATTT+TGG - chr1_4:61504436-61504455 Msa0175540:CDS 30.0%
! GTATGTGAAAGACACATTTT+GGG - chr1_4:61504437-61504456 Msa0175540:CDS 30.0%
TAAAATCGAAAAGGAAAGCA+TGG - chr1_4:61504575-61504594 Msa0175540:CDS 30.0%
AATTAAAGACGTGGTGTTTA+AGG - chr1_4:61504803-61504822 Msa0175540:CDS 30.0%
CGTGGCAAAATATAAAAAGA+CGG + chr1_4:61504948-61504967 None:intergenic 30.0%
! CGTCTTTTTATATTTTGCCA+CGG - chr1_4:61504946-61504965 Msa0175540:CDS 30.0%
AGAATTGCAACGTGTTAATA+TGG - chr1_4:61505019-61505038 Msa0175540:CDS 30.0%
AGTAGAAGCAACTTCATAAA+AGG + chr1_4:61505054-61505073 None:intergenic 30.0%
ATTTACAGAAAGTGATGAAC+AGG - chr1_4:61505093-61505112 Msa0175540:CDS 30.0%
!!! TTATTTTCCTTGCTGTTCTT+TGG + chr1_4:61505314-61505333 None:intergenic 30.0%
!!! GTCTGATTTTGGGTTTTTTA+TGG - chr1_4:61505439-61505458 Msa0175540:CDS 30.0%
!!! ATTTTGGGTTTTTTATGGCA+GGG - chr1_4:61505444-61505463 Msa0175540:CDS 30.0%
TCATCAGTTTCTTGAAGAAT+AGG + chr1_4:61505483-61505502 None:intergenic 30.0%
TGATAAAACATCTGTTTCGT+AGG - chr1_4:61505595-61505614 Msa0175540:CDS 30.0%
! GATTATTTCTTGTGGTAACA+TGG - chr1_4:61505684-61505703 Msa0175540:CDS 30.0%
ATGACAGCAATGTAAATACA+AGG - chr1_4:61506001-61506020 Msa0175540:intron 30.0%
TGACAGCAATGTAAATACAA+GGG - chr1_4:61506002-61506021 Msa0175540:intron 30.0%
CATTCGTCTGAAGAAGAATT+AGG + chr1_4:61503025-61503044 None:intergenic 35.0%
AAGATGAAGAACCTAGAACT+GGG - chr1_4:61503296-61503315 Msa0175540:three_prime_UTR 35.0%
GGTCTGAAGAAGAAGTTATT+AGG - chr1_4:61503329-61503348 Msa0175540:CDS 35.0%
ATGAATTACGCTAATCGTGT+AGG - chr1_4:61503358-61503377 Msa0175540:intron 35.0%
TAGCATGTAATTGTGCAAGA+AGG - chr1_4:61503440-61503459 Msa0175540:CDS 35.0%
!! AATGCTTGTGTAGCTTTAGA+TGG - chr1_4:61503532-61503551 Msa0175540:intron 35.0%
TTTAGATTGGATGAGAGTTC+GGG - chr1_4:61503622-61503641 Msa0175540:CDS 35.0%
TCAGAACTTAATGATCAAGG+TGG - chr1_4:61503664-61503683 Msa0175540:intron 35.0%
CAGAACTTAATGATCAAGGT+GGG - chr1_4:61503665-61503684 Msa0175540:intron 35.0%
TGGTAGAAATCTTCAATCTG+TGG - chr1_4:61503696-61503715 Msa0175540:intron 35.0%
GGTAGAAATCTTCAATCTGT+GGG - chr1_4:61503697-61503716 Msa0175540:intron 35.0%
ATTCTGTGCAGAAAGTAAGA+CGG - chr1_4:61503773-61503792 Msa0175540:CDS 35.0%
! AGGGCTGCATATGAATATTT+TGG - chr1_4:61503937-61503956 Msa0175540:CDS 35.0%
TGGATGCTAAAACTCTTACT+TGG - chr1_4:61504082-61504101 Msa0175540:CDS 35.0%
TTACTTGGTTGTTCACAAGA+TGG - chr1_4:61504097-61504116 Msa0175540:CDS 35.0%
AGATGGTTAGAATGTATGCA+TGG - chr1_4:61504114-61504133 Msa0175540:CDS 35.0%
TCTTCGGTAATTATGCCATT+TGG + chr1_4:61504147-61504166 None:intergenic 35.0%
CTTGTGGCATATAATGAAGA+AGG - chr1_4:61504227-61504246 Msa0175540:CDS 35.0%
AAGAAGGTTCCAGAAATGTT+GGG - chr1_4:61504243-61504262 Msa0175540:CDS 35.0%
GAGTATTTACCCAACATTTC+TGG + chr1_4:61504255-61504274 None:intergenic 35.0%
! GTCTATCAAAACACTTTTGC+AGG - chr1_4:61504284-61504303 Msa0175540:CDS 35.0%
TCTGAGCAAAAGTGATTTCA+TGG - chr1_4:61504323-61504342 Msa0175540:CDS 35.0%
AATGTGTCTTTCACATACAC+AGG + chr1_4:61504435-61504454 None:intergenic 35.0%
ACTCAAAGACAACATTGAAG+CGG - chr1_4:61504520-61504539 Msa0175540:CDS 35.0%
! ATTGCTTGTGTGAGTCATTT+TGG - chr1_4:61504624-61504643 Msa0175540:CDS 35.0%
! TGGTAAATGCTTTCTGGAAA+TGG + chr1_4:61504659-61504678 None:intergenic 35.0%
!! TACTAGCTTTGAAAGATTGG+AGG - chr1_4:61504731-61504750 Msa0175540:CDS 35.0%
! CTTTTTATATTTTGCCACGG+TGG - chr1_4:61504949-61504968 Msa0175540:CDS 35.0%
! TGGCTCTTTAGAAGATAACA+CGG + chr1_4:61505135-61505154 None:intergenic 35.0%
AGTATGTTCTTGTGTAATCC+TGG + chr1_4:61505162-61505181 None:intergenic 35.0%
CAACTGTAACTCTCAGTAAT+GGG - chr1_4:61505216-61505235 Msa0175540:CDS 35.0%
!! GATGTCTTCCTTTTTGAAAG+AGG + chr1_4:61505245-61505264 None:intergenic 35.0%
AAACGATCAAAGTCAAGAAG+AGG - chr1_4:61505334-61505353 Msa0175540:CDS 35.0%
!!! GATTTTGGGTTTTTTATGGC+AGG - chr1_4:61505443-61505462 Msa0175540:CDS 35.0%
ACATCTTAGTGATGTAAACC+AGG - chr1_4:61505509-61505528 Msa0175540:CDS 35.0%
! GGTTCTATATTTTCATCACC+TGG + chr1_4:61505530-61505549 None:intergenic 35.0%
GGTGATGAAAATATAGAACC+TGG - chr1_4:61505530-61505549 Msa0175540:CDS 35.0%
GTTCAGAACAGGAAATATTC+TGG + chr1_4:61505646-61505665 None:intergenic 35.0%
!! TTCCTGTTCTGAACTTTTAC+AGG - chr1_4:61505652-61505671 Msa0175540:CDS 35.0%
TACCTGTAAAAGTTCAGAAC+AGG + chr1_4:61505657-61505676 None:intergenic 35.0%
AGGATGGTTGATCATTCTTA+TGG + chr1_4:61505771-61505790 None:intergenic 35.0%
ATAGCTGCTGTTAAACAAAG+TGG - chr1_4:61505832-61505851 Msa0175540:CDS 35.0%
GAAGATGAAGAACCTAGAAC+TGG - chr1_4:61503295-61503314 Msa0175540:three_prime_UTR 40.0%
CTAAATGTCATCCCAGTTCT+AGG + chr1_4:61503310-61503329 None:intergenic 40.0%
CTAGAACTGGGATGACATTT+AGG - chr1_4:61503308-61503327 Msa0175540:exon 40.0%
! TACGCTAATCGTGTAGGTTT+TGG - chr1_4:61503364-61503383 Msa0175540:intron 40.0%
GAGGTAAGATATTGCTTCGA+AGG + chr1_4:61503487-61503506 None:intergenic 40.0%
TTACCTCGAAAACACAGTGT+AGG - chr1_4:61503500-61503519 Msa0175540:intron 40.0%
TACCTCGAAAACACAGTGTA+GGG - chr1_4:61503501-61503520 Msa0175540:intron 40.0%
! CAATCTAAAATACCGTCCTC+TGG + chr1_4:61503611-61503630 None:intergenic 40.0%
!! CAGAGGACGGTATTTTAGAT+TGG - chr1_4:61503609-61503628 Msa0175540:CDS 40.0%
TTAGATTGGATGAGAGTTCG+GGG - chr1_4:61503623-61503642 Msa0175540:CDS 40.0%
GATCAAGGTGGGATTAATGT+TGG - chr1_4:61503676-61503695 Msa0175540:intron 40.0%
AAAGTAAGACGGCTAAGACT+TGG - chr1_4:61503784-61503803 Msa0175540:CDS 40.0%
AAGTAAGACGGCTAAGACTT+GGG - chr1_4:61503785-61503804 Msa0175540:CDS 40.0%
ATGATGGTTCACTCCAACAA+CGG + chr1_4:61504022-61504041 None:intergenic 40.0%
GAAGAAGGTTCCAGAAATGT+TGG - chr1_4:61504242-61504261 Msa0175540:CDS 40.0%
! CAAAACACTTTTGCAGGATG+TGG - chr1_4:61504290-61504309 Msa0175540:CDS 40.0%
GCAAAAGTGATTTCATGGAG+AGG - chr1_4:61504328-61504347 Msa0175540:CDS 40.0%
AAAGTGATTTCATGGAGAGG+TGG - chr1_4:61504331-61504350 Msa0175540:CDS 40.0%
AAGTGATTTCATGGAGAGGT+GGG - chr1_4:61504332-61504351 Msa0175540:CDS 40.0%
! AATCGAAAAGGAAAGCATGG+CGG - chr1_4:61504578-61504597 Msa0175540:CDS 40.0%
TGGCAATGGTAAATGCTTTC+TGG + chr1_4:61504665-61504684 None:intergenic 40.0%
CTTTGTGTGCTTAAGCTCAT+TGG - chr1_4:61504906-61504925 Msa0175540:CDS 40.0%
! TTTATATTTTGCCACGGTGG+AGG - chr1_4:61504952-61504971 Msa0175540:CDS 40.0%
GAAAGTGATGAACAGGATCA+AGG - chr1_4:61505100-61505119 Msa0175540:CDS 40.0%
ATGTTCTTGTGTAATCCTGG+AGG + chr1_4:61505159-61505178 None:intergenic 40.0%
CCATTACTGAGAGTTACAGT+TGG + chr1_4:61505218-61505237 None:intergenic 40.0%
CCAACTGTAACTCTCAGTAA+TGG - chr1_4:61505215-61505234 Msa0175540:CDS 40.0%
ATGGGCATCCTCTTTCAAAA+AGG - chr1_4:61505234-61505253 Msa0175540:CDS 40.0%
CAAAACTCCAAAGAACAGCA+AGG - chr1_4:61505304-61505323 Msa0175540:CDS 40.0%
TGCCTGCAAAAAGAACACAT+GGG + chr1_4:61505743-61505762 None:intergenic 40.0%
! GTAAGCTAGAACTTTTGTGC+GGG + chr1_4:61506042-61506061 None:intergenic 40.0%
! CGTAAGCTAGAACTTTTGTG+CGG + chr1_4:61506043-61506062 None:intergenic 40.0%
CATGAACTTGGTCAAACCAG+AGG - chr1_4:61503592-61503611 Msa0175540:CDS 45.0%
AACTTGGTCAAACCAGAGGA+CGG - chr1_4:61503596-61503615 Msa0175540:CDS 45.0%
!! TCTGTGGGTGTTGAGATGAA+TGG - chr1_4:61503712-61503731 Msa0175540:intron 45.0%
!! CTGTGGGTGTTGAGATGAAT+GGG - chr1_4:61503713-61503732 Msa0175540:intron 45.0%
GTGTTGAGATGAATGGGTGT+GGG - chr1_4:61503719-61503738 Msa0175540:intron 45.0%
TGATGGTTCACTCCAACAAC+GGG + chr1_4:61504021-61504040 None:intergenic 45.0%
GTTGTTGGAGTGAACCATCA+TGG - chr1_4:61504021-61504040 Msa0175540:CDS 45.0%
GTGTGCAATATTGTCGAACG+TGG - chr1_4:61504062-61504081 Msa0175540:CDS 45.0%
ATGCATGGACATGCTCCAAA+TGG - chr1_4:61504129-61504148 Msa0175540:CDS 45.0%
!! TCGATGACGAGCTTTAGGAA+AGG + chr1_4:61504202-61504221 None:intergenic 45.0%
TTCCTAAAGCTCGTCATCGA+TGG - chr1_4:61504202-61504221 Msa0175540:CDS 45.0%
AGTGATTTCATGGAGAGGTG+GGG - chr1_4:61504333-61504352 Msa0175540:CDS 45.0%
TCACATACACAGGAACCCAA+CGG + chr1_4:61504425-61504444 None:intergenic 45.0%
! GTGAAAGACACATTTTGGGC+TGG - chr1_4:61504441-61504460 Msa0175540:CDS 45.0%
GACAACATTGAAGCGGTTTG+TGG - chr1_4:61504527-61504546 Msa0175540:CDS 45.0%
TTTACATACTTCCTCCACCG+TGG + chr1_4:61504966-61504985 None:intergenic 45.0%
! GGTGGAGGAAGTATGTAAAG+CGG - chr1_4:61504967-61504986 Msa0175540:CDS 45.0%
TCTTGTGTAATCCTGGAGGA+TGG + chr1_4:61505155-61505174 None:intergenic 45.0%
ACAATCCTAGTCACGTGGTT+TGG + chr1_4:61505191-61505210 None:intergenic 45.0%
GATCAACAATCCTAGTCACG+TGG + chr1_4:61505196-61505215 None:intergenic 45.0%
! TGCCCATGTGTTCTTTTTGC+AGG - chr1_4:61505738-61505757 Msa0175540:CDS 45.0%
GTGCCTGCAAAAAGAACACA+TGG + chr1_4:61505744-61505763 None:intergenic 45.0%
GGTCTATGTCTTTACGAGGA+TGG + chr1_4:61505787-61505806 None:intergenic 45.0%
!! GGTTGGTCTATGTCTTTACG+AGG + chr1_4:61505791-61505810 None:intergenic 45.0%
ACATAGACCAACCACTACTC+TGG - chr1_4:61505798-61505817 Msa0175540:CDS 45.0%
! AGCCCTACACTGTGTTTTCG+AGG + chr1_4:61503506-61503525 None:intergenic 50.0%
CGAAAACACAGTGTAGGGCT+AGG - chr1_4:61503506-61503525 Msa0175540:intron 50.0%
! GGTGTTGAGATGAATGGGTG+TGG - chr1_4:61503718-61503737 Msa0175540:intron 50.0%
GGGTGTGGGAATCTTACTTC+TGG - chr1_4:61503733-61503752 Msa0175540:intron 50.0%
TTTGGGCAGATGCGAGATGT+AGG - chr1_4:61503917-61503936 Msa0175540:CDS 50.0%
TTGGGCAGATGCGAGATGTA+GGG - chr1_4:61503918-61503937 Msa0175540:CDS 50.0%
GATGGTTCACTCCAACAACG+GGG + chr1_4:61504020-61504039 None:intergenic 50.0%
CACCATCGATGACGAGCTTT+AGG + chr1_4:61504207-61504226 None:intergenic 50.0%
TATTTGATGAGCGGCACCGT+TGG - chr1_4:61504406-61504425 Msa0175540:CDS 50.0%
ATTTGATGAGCGGCACCGTT+GGG - chr1_4:61504407-61504426 Msa0175540:CDS 50.0%
! CTGGAATGTCGACTGCACAA+CGG - chr1_4:61504460-61504479 Msa0175540:CDS 50.0%
! CTTCTAAAGAGCCATCCTCC+AGG - chr1_4:61505141-61505160 Msa0175540:CDS 50.0%
CAACTCCAAACCACGTGACT+AGG - chr1_4:61505183-61505202 Msa0175540:CDS 50.0%
ACCAACCACTACTCTGGACA+TGG - chr1_4:61505804-61505823 Msa0175540:CDS 50.0%
ACCATGTCCAGAGTAGTGGT+TGG + chr1_4:61505808-61505827 None:intergenic 50.0%
AACCACTACTCTGGACATGG+TGG - chr1_4:61505807-61505826 Msa0175540:CDS 50.0%
AACCACCATGTCCAGAGTAG+TGG + chr1_4:61505812-61505831 None:intergenic 50.0%
GTTCGGGGACTCATGTAGAG+AGG - chr1_4:61503638-61503657 Msa0175540:intron 55.0%
AGACGGCTAAGACTTGGGAG+AGG - chr1_4:61503790-61503809 Msa0175540:CDS 55.0%
TTGCCATTGGTCCCCGTTGT+TGG - chr1_4:61504006-61504025 Msa0175540:CDS 55.0%
ACTCCAACAACGGGGACCAA+TGG + chr1_4:61504012-61504031 None:intergenic 55.0%
CTCGTCATCGATGGTGCTTG+TGG - chr1_4:61504211-61504230 Msa0175540:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 61503016 61506097 61503016 ID=Msa0175540;Name=Msa0175540
chr1_4 mRNA 61503016 61506097 61503016 ID=Msa0175540-mRNA-1;Parent=Msa0175540;Name=Msa0175540-mRNA-1;_AED=0.03;_eAED=0.05;_QI=0|0.75|0.8|1|1|1|5|302|786
chr1_4 exon 61503016 61503353 61503016 ID=Msa0175540-mRNA-1:exon:19703;Parent=Msa0175540-mRNA-1
chr1_4 exon 61503440 61503496 61503440 ID=Msa0175540-mRNA-1:exon:19702;Parent=Msa0175540-mRNA-1
chr1_4 exon 61503583 61503648 61503583 ID=Msa0175540-mRNA-1:exon:19701;Parent=Msa0175540-mRNA-1
chr1_4 exon 61503758 61505910 61503758 ID=Msa0175540-mRNA-1:exon:19700;Parent=Msa0175540-mRNA-1
chr1_4 exon 61506049 61506097 61506049 ID=Msa0175540-mRNA-1:exon:19699;Parent=Msa0175540-mRNA-1
chr1_4 CDS 61506049 61506097 61506049 ID=Msa0175540-mRNA-1:cds;Parent=Msa0175540-mRNA-1
chr1_4 CDS 61503758 61505910 61503758 ID=Msa0175540-mRNA-1:cds;Parent=Msa0175540-mRNA-1
chr1_4 CDS 61503583 61503648 61503583 ID=Msa0175540-mRNA-1:cds;Parent=Msa0175540-mRNA-1
chr1_4 CDS 61503440 61503496 61503440 ID=Msa0175540-mRNA-1:cds;Parent=Msa0175540-mRNA-1
chr1_4 CDS 61503318 61503353 61503318 ID=Msa0175540-mRNA-1:cds;Parent=Msa0175540-mRNA-1
chr1_4 three_prime_UTR 61503016 61503317 61503016 ID=Msa0175540-mRNA-1:three_prime_utr;Parent=Msa0175540-mRNA-1
Gene Sequence

>Msa0175540

CTGTGCCCTAATTCTTCTTCAGACGAATGTGTTCGCTTTAAATCAGTAATGGAAGAAATAGTTGCATCTTGTGATAAAGTTGAAAAAAGTGAAGCAAATAAAAGAAATGATGATAAATTTGCAGCTGCTATTGTTGTTAGTGAAGATGAAGAACCTAGAACTGGGATGACATTTAGGTCTGAAGAAGAAGTTATTAGGTATTACATGAATTACGCTAATCGTGTAGGTTTTGGAGTTACAAAAATAAGTTCAAAAAATGCAGATGATGGAAAGAAGTATTTTACTCTAGCATGTAATTGTGCAAGAAGGTATGTGAGTACTTCGAAGAATCCTTCGAAGCAATATCTTACCTCGAAAACACAGTGTAGGGCTAGGTTGAATGCTTGTGTAGCTTTAGATGGATCTAGTACCATTTCAAGAATTGTTATTGAACATAATCATGAACTTGGTCAAACCAGAGGACGGTATTTTAGATTGGATGAGAGTTCGGGGACTCATGTAGAGAGGAATTCAGAACTTAATGATCAAGGTGGGATTAATGTTGGTAGAAATCTTCAATCTGTGGGTGTTGAGATGAATGGGTGTGGGAATCTTACTTCTGGAGAAAATGATTGTAGAAATTCTGTGCAGAAAGTAAGACGGCTAAGACTTGGGAGAGGAGATGTTGATGCAATTCATAGCTTTTTTCATAGAATGCAAAAGCAAAATAGTCAATTTTATTGTGCAATGGATATGGATGATAAAAGGAATATACAAAATTTATTTTGGGCAGATGCGAGATGTAGGGCTGCATATGAATATTTTGGTGAAGTCATAACTTTGGACACCACTTATTTAACAAATAAGTATGACTTGCCATTGGTCCCCGTTGTTGGAGTGAACCATCATGGTCAGACTATTTTATTGGGGTGTGCAATATTGTCGAACGTGGATGCTAAAACTCTTACTTGGTTGTTCACAAGATGGTTAGAATGTATGCATGGACATGCTCCAAATGGCATAATTACCGAAGATGATAAAGCAATGAAAAATGCAATTGAGGTTGCCTTTCCTAAAGCTCGTCATCGATGGTGCTTGTGGCATATAATGAAGAAGGTTCCAGAAATGTTGGGTAAATACTCTCGTAATGAGTCTATCAAAACACTTTTGCAGGATGTGGTATATGACTCTCTGAGCAAAAGTGATTTCATGGAGAGGTGGGGAAATATGATAGAACATTATAACCTACATGATAATGAATGGTTAAAATGGTTATTTGATGAGCGGCACCGTTGGGTTCCTGTGTATGTGAAAGACACATTTTGGGCTGGAATGTCGACTGCACAACGGAATGAAAGTATAGACTCATTTTTTGATGGGTATGTTAACTCAAAGACAACATTGAAGCGGTTTGTGGAACAGTATGACGATGCATTGAATGATAAAATCGAAAAGGAAAGCATGGCGGATTTTGATTCATTTAACTCAACAATTGCTTGTGTGAGTCATTTTGGCTTTGAAGTCCATTTCCAGAAAGCATTTACCATTGCCAAATTTAAAGAATTTCAAGTAGAGGTCTCTTCTATGATGTATTGTAATACTAGCTTTGAAAGATTGGAGGACTTGAATTCTATATTCTCTGTTACTGAAAATAAGAAAGTAAAAGAGAAAATTAAAGACGTGGTGTTTAAGGTATGTTTCAATGAAAAGGACTTCAAATTGCAGTGCACGTGTTGCTTATTTGAGTTTAAAGGAATTTTATGTAGACACATTCTTTGTGTGCTTAAGCTCATTGGCAAAACAGATTCAATGCCGTCTTTTTATATTTTGCCACGGTGGAGGAAGTATGTAAAGCGGAGATATACATTGATGAAACATGGTTTTGAAGAATTGCAACGTGTTAATATGGCATGTGATGCCTTTTATGAAGTTGCTTCTACTATGATAAATTCTGAAGATGATTTACAGAAAGTGATGAACAGGATCAAGGACTTGAAAACCGTGTTATCTTCTAAAGAGCCATCCTCCAGGATTACACAAGAACATACTTCAACTCCAAACCACGTGACTAGGATTGTTGATCCAACTGTAACTCTCAGTAATGGGCATCCTCTTTCAAAAAGGAAGACATCTAATGTTGATCAAATTTTAAAGAAGAAGCTTGCAAGACACAAAACTCCAAAGAACAGCAAGGAAAATAAAAACGATCAAAGTCAAGAAGAGGGCTCATTGTGTACACCTATTCTTCAAGAAACTGATGATGAAGAACATCTTAGTGATGTAAACCAGGTTCCATATTGTCCTCAAATCATAAACCAGAATATTTCCTGTTCTGAACTTTTACAGGCACAACACCATAAGAATGATCAACCATCCTCGTAA

Protein sequence

>Msa0175540

LCPNSSSDECVRFKSVMEEIVASCDKVEKSEANKRNDDKFAAAIVVSEDEEPRTGMTFRSEEEVIRYYMNYANRVGFGVTKISSKNADDGKKYFTLACNCARRYVSTSKNPSKQYLTSKTQCRARLNACVALDGSSTISRIVIEHNHELGQTRGRYFRLDESSGTHVERNSELNDQGGINVGRNLQSVGVEMNGCGNLTSGENDCRNSVQKVRRLRLGRGDVDAIHSFFHRMQKQNSQFYCAMDMDDKRNIQNLFWADARCRAAYEYFGEVITLDTTYLTNKYDLPLVPVVGVNHHGQTILLGCAILSNVDAKTLTWLFTRWLECMHGHAPNGIITEDDKAMKNAIEVAFPKARHRWCLWHIMKKVPEMLGKYSRNESIKTLLQDVVYDSLSKSDFMERWGNMIEHYNLHDNEWLKWLFDERHRWVPVYVKDTFWAGMSTAQRNESIDSFFDGYVNSKTTLKRFVEQYDDALNDKIEKESMADFDSFNSTIACVSHFGFEVHFQKAFTIAKFKEFQVEVSSMMYCNTSFERLEDLNSIFSVTENKKVKEKIKDVVFKVCFNEKDFKLQCTCCLFEFKGILCRHILCVLKLIGKTDSMPSFYILPRWRKYVKRRYTLMKHGFEELQRVNMACDAFYEVASTMINSEDDLQKVMNRIKDLKTVLSSKEPSSRITQEHTSTPNHVTRIVDPTVTLSNGHPLSKRKTSNVDQILKKKLARHKTPKNSKENKNDQSQEEGSLCTPILQETDDEEHLSDVNQVPYCPQIINQNISCSELLQAQHHKNDQPSS*