Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548930 | XP_013442808.1 | 85.052 | 194 | 9 | 2 | 3 | 176 | 25 | 218 | 1.80e-102 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548930 | sp|Q9LXD1|RLF_ARATH | 52.041 | 196 | 61 | 5 | 6 | 176 | 18 | 205 | 2.49e-60 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548930 | A0A072TIW3 | 85.052 | 194 | 9 | 2 | 3 | 176 | 25 | 218 | 8.60e-103 | 303 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026910 | Msa0548930 | 0.808396 | 3.161172e-50 | -8.615850e-47 |
| Msa0030300 | Msa0548930 | 0.801093 | 1.059513e-48 | -8.615850e-47 |
| Msa0037880 | Msa0548930 | 0.804090 | 2.552276e-49 | -8.615850e-47 |
| Msa0043980 | Msa0548930 | 0.830502 | 2.832298e-55 | -8.615850e-47 |
| Msa0071250 | Msa0548930 | 0.818661 | 1.744811e-52 | -8.615850e-47 |
| Msa0090550 | Msa0548930 | 0.810536 | 1.097765e-50 | -8.615850e-47 |
| Msa0104230 | Msa0548930 | 0.806350 | 8.586178e-50 | -8.615850e-47 |
| Msa0104800 | Msa0548930 | 0.828821 | 7.265191e-55 | -8.615850e-47 |
| Msa0124550 | Msa0548930 | 0.807393 | 5.168149e-50 | -8.615850e-47 |
| Msa0137480 | Msa0548930 | 0.806022 | 1.006356e-49 | -8.615850e-47 |
| Msa0138020 | Msa0548930 | 0.836961 | 6.884844e-57 | -8.615850e-47 |
| Msa0150230 | Msa0548930 | 0.807890 | 4.052158e-50 | -8.615850e-47 |
| Msa0151180 | Msa0548930 | 0.809061 | 2.279235e-50 | -8.615850e-47 |
| Msa0170570 | Msa0548930 | 0.801969 | 7.006011e-49 | -8.615850e-47 |
| Msa0173390 | Msa0548930 | 0.803460 | 3.449135e-49 | -8.615850e-47 |
| Msa0186950 | Msa0548930 | 0.806654 | 7.404631e-50 | -8.615850e-47 |
| Msa0197610 | Msa0548930 | 0.819706 | 1.008726e-52 | -8.615850e-47 |
| Msa0202930 | Msa0548930 | 0.806862 | 6.692667e-50 | -8.615850e-47 |
| Msa0207030 | Msa0548930 | 0.809964 | 1.458217e-50 | -8.615850e-47 |
| Msa0376600 | Msa0548930 | 0.802171 | 6.367733e-49 | -8.615850e-47 |
| Msa0376910 | Msa0548930 | 0.802657 | 5.055861e-49 | -8.615850e-47 |
| Msa0380100 | Msa0548930 | 0.816377 | 5.705186e-52 | -8.615850e-47 |
| Msa0422180 | Msa0548930 | 0.831175 | 1.937509e-55 | -8.615850e-47 |
| Msa0432500 | Msa0548930 | 0.803415 | 3.524207e-49 | -8.615850e-47 |
| Msa0482040 | Msa0548930 | 0.802620 | 5.144710e-49 | -8.615850e-47 |
| Msa0240270 | Msa0548930 | 0.821657 | 3.592827e-53 | -8.615850e-47 |
| Msa0241140 | Msa0548930 | 0.803789 | 2.947598e-49 | -8.615850e-47 |
| Msa0262370 | Msa0548930 | 0.808039 | 3.767607e-50 | -8.615850e-47 |
| Msa0284450 | Msa0548930 | 0.853701 | 2.007334e-61 | -8.615850e-47 |
| Msa0285330 | Msa0548930 | 0.842164 | 3.056999e-58 | -8.615850e-47 |
| Msa0300150 | Msa0548930 | 0.804183 | 2.440695e-49 | -8.615850e-47 |
| Msa0326750 | Msa0548930 | 0.814309 | 1.644797e-51 | -8.615850e-47 |
| Msa0336250 | Msa0548930 | 0.803020 | 4.255146e-49 | -8.615850e-47 |
| Msa0482940 | Msa0548930 | 0.806178 | 9.330035e-50 | -8.615850e-47 |
| Msa0518170 | Msa0548930 | 0.813516 | 2.460486e-51 | -8.615850e-47 |
| Msa0518380 | Msa0548930 | 0.817726 | 2.839205e-52 | -8.615850e-47 |
| Msa0518440 | Msa0548930 | 0.805775 | 1.134080e-49 | -8.615850e-47 |
| Msa0532980 | Msa0548930 | 0.804566 | 2.031124e-49 | -8.615850e-47 |
| Msa0548930 | Msa0566350 | 0.817059 | 4.013191e-52 | -8.615850e-47 |
| Msa0548930 | Msa0566750 | 0.809736 | 1.632555e-50 | -8.615850e-47 |
| Msa0548930 | Msa0620330 | 0.810340 | 1.210399e-50 | -8.615850e-47 |
| Msa0548930 | Msa0654620 | 0.817301 | 3.540912e-52 | -8.615850e-47 |
| Msa0548930 | Msa0672440 | 0.920632 | 1.001198e-87 | -8.615850e-47 |
| Msa0548930 | Msa0676280 | 0.956461 | 2.796440e-114 | -8.615850e-47 |
| Msa0548930 | Msa0705990 | 0.828515 | 8.614884e-55 | -8.615850e-47 |
| Msa0548930 | Msa0721340 | 0.810448 | 1.146964e-50 | -8.615850e-47 |
| Msa0548930 | Msa0726080 | 0.838400 | 2.940741e-57 | -8.615850e-47 |
| Msa0548930 | Msa0750850 | 0.809977 | 1.449141e-50 | -8.615850e-47 |
| Msa0548930 | Msa0760990 | -0.804323 | 2.282468e-49 | -8.615850e-47 |
| Msa0548930 | Msa0765180 | 0.825418 | 4.739240e-54 | -8.615850e-47 |
| Msa0548930 | Msa0773590 | 0.822751 | 2.003542e-53 | -8.615850e-47 |
| Msa0548930 | Msa0811040 | 0.822545 | 2.236627e-53 | -8.615850e-47 |
| Msa0548930 | Msa0831850 | 0.813607 | 2.350031e-51 | -8.615850e-47 |
| Msa0548930 | Msa0842770 | 0.803617 | 3.200967e-49 | -8.615850e-47 |
| Msa0548930 | Msa0846230 | 0.844489 | 7.326958e-59 | -8.615850e-47 |
| Msa0548930 | Msa0861570 | 0.800454 | 1.430323e-48 | -8.615850e-47 |
| Msa0548930 | Msa0980880 | 0.831879 | 1.299592e-55 | -8.615850e-47 |
| Msa0548930 | Msa1001390 | 0.811088 | 8.338536e-51 | -8.615850e-47 |
| Msa0548930 | Msa1063420 | 0.817250 | 3.634900e-52 | -8.615850e-47 |
| Msa0548930 | Msa1063510 | 0.811693 | 6.163178e-51 | -8.615850e-47 |
| Msa0548930 | Msa1071320 | 0.805593 | 1.238754e-49 | -8.615850e-47 |
| Msa0548930 | Msa1077340 | 0.819576 | 1.079913e-52 | -8.615850e-47 |
| Msa0548930 | Msa1084270 | 0.802380 | 5.766944e-49 | -8.615850e-47 |
| Msa0548930 | Msa1115280 | 0.819154 | 1.348264e-52 | -8.615850e-47 |
| Msa0548930 | Msa1143020 | 0.832732 | 7.994061e-56 | -8.615850e-47 |
| Msa0548930 | Msa1176720 | 0.801840 | 7.447527e-49 | -8.615850e-47 |
| Msa0548930 | Msa1178580 | 0.805353 | 1.390478e-49 | -8.615850e-47 |
| Msa0548930 | Msa1202660 | 0.800248 | 1.575760e-48 | -8.615850e-47 |
| Msa0548930 | Msa1207310 | 0.817973 | 2.497242e-52 | -8.615850e-47 |
| Msa0548930 | Msa1207350 | 0.810755 | 9.842646e-51 | -8.615850e-47 |
| Msa0548930 | Msa1208380 | 0.804275 | 2.335461e-49 | -8.615850e-47 |
| Msa0548930 | Msa1233850 | 0.809183 | 2.145603e-50 | -8.615850e-47 |
| Msa0548930 | Msa1250110 | 0.804765 | 1.846384e-49 | -8.615850e-47 |
| Msa0548930 | Msa1270660 | 0.814974 | 1.172086e-51 | -8.615850e-47 |
| Msa0548930 | Msa1276150 | 0.804792 | 1.822551e-49 | -8.615850e-47 |
| Msa0548930 | Msa1295330 | 0.809512 | 1.824047e-50 | -8.615850e-47 |
| Msa0548930 | Msa1307180 | 0.819303 | 1.246537e-52 | -8.615850e-47 |
| Msa0548930 | Msa1315750 | 0.862404 | 5.190003e-64 | -8.615850e-47 |
| Msa0548930 | Msa1316360 | 0.806284 | 8.863408e-50 | -8.615850e-47 |
| Msa0548930 | Msa1316440 | 0.806001 | 1.016846e-49 | -8.615850e-47 |
| Msa0548930 | Msa1331320 | 0.811605 | 6.438447e-51 | -8.615850e-47 |
| Msa0548930 | Msa1370590 | 0.810929 | 9.026570e-51 | -8.615850e-47 |
| Msa0548930 | Msa1371240 | 0.816454 | 5.483717e-52 | -8.615850e-47 |
| Msa0548930 | Msa1377820 | 0.810466 | 1.136699e-50 | -8.615850e-47 |
| Msa0548930 | Msa1384100 | 0.809270 | 2.055518e-50 | -8.615850e-47 |
| Msa0548930 | Msa1407190 | 0.808538 | 2.948204e-50 | -8.615850e-47 |
| Msa0548930 | Msa1442790 | 0.814500 | 1.493019e-51 | -8.615850e-47 |
| Msa0548930 | Msa1444120 | 0.802308 | 5.966643e-49 | -8.615850e-47 |
| Msa0548930 | Msa1463900 | 0.809842 | 1.549225e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548930 | MtrunA17_Chr4g0019781 | 85.052 | 194 | 9 | 2 | 3 | 176 | 25 | 218 | 1.66e-106 | 303 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0548930 | AT5G09680.1 | 52.041 | 196 | 61 | 5 | 6 | 176 | 18 | 205 | 2.53e-61 | 189 |
| Msa0548930 | AT5G09680.2 | 52.041 | 196 | 61 | 5 | 6 | 176 | 18 | 205 | 2.53e-61 | 189 |
| Msa0548930 | AT5G09680.3 | 52.041 | 196 | 61 | 5 | 6 | 176 | 64 | 251 | 4.71e-61 | 190 |
Find 60 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGAGGATTCTTCCTTTA+TGG | 0.134703 | 4_1:+43487498 | None:intergenic |
| GGTTAACGCGGAATTCTTAC+TGG | 0.266085 | 4_1:-43483329 | Msa0548930:CDS |
| AGTACAGTTGTTCTGTAATC+TGG | 0.281609 | 4_1:-43483099 | Msa0548930:three_prime_UTR |
| ACAATAATGGTGGTATCTTA+TGG | 0.283733 | 4_1:-43487459 | Msa0548930:CDS |
| TGCATGTCATGCGTTGATTC+AGG | 0.285598 | 4_1:-43482858 | Msa0548930:three_prime_UTR |
| AATTGTTTAGAATGTTCATT+TGG | 0.289941 | 4_1:-43482923 | Msa0548930:three_prime_UTR |
| CCAGGAGTCATTATTCAATA+AGG | 0.293311 | 4_1:-43483203 | Msa0548930:three_prime_UTR |
| TAGAATGTTCATTTGGGTTA+TGG | 0.308604 | 4_1:-43482916 | Msa0548930:three_prime_UTR |
| GTTACTACTGCTTGCATTTG+AGG | 0.317183 | 4_1:+43487483 | None:intergenic |
| TGATTCTTCAAACTCTAAAA+AGG | 0.332088 | 4_1:-43487419 | Msa0548930:CDS |
| CCCTCTTCTATTTACTTGCC+AGG | 0.340284 | 4_1:-43483221 | Msa0548930:three_prime_UTR |
| CGCATGACATGCACCCTACT+TGG | 0.351667 | 4_1:+43482868 | None:intergenic |
| TCTGATTAAAGAATCCCTAT+TGG | 0.352797 | 4_1:-43483142 | Msa0548930:three_prime_UTR |
| CCAGGGTGAAACGTCATATA+TGG | 0.357413 | 4_1:+43485679 | None:intergenic |
| ATTGTATGACGAACTCCAAT+AGG | 0.360769 | 4_1:+43483127 | None:intergenic |
| TATCAGATAAATACCATGCT+TGG | 0.376980 | 4_1:-43483351 | Msa0548930:intron |
| CGAACTCATCCTGACCTTGC+AGG | 0.392085 | 4_1:-43487214 | Msa0548930:intron |
| GAACAGGAGACTAATTTCTA+TGG | 0.394765 | 4_1:-43485773 | Msa0548930:CDS |
| GTCTAAAAGGACAGTCGAAC+AGG | 0.400231 | 4_1:-43485789 | Msa0548930:CDS |
| TATGTTGATCCAGGTCTAAA+AGG | 0.419525 | 4_1:-43485802 | Msa0548930:intron |
| ATCAGATAAATACCATGCTT+GGG | 0.425755 | 4_1:-43483350 | Msa0548930:intron |
| AGCAGTAGTAACAACAATAA+TGG | 0.427293 | 4_1:-43487472 | Msa0548930:CDS |
| TGAAAAGGGTTATAGTCAAA+TGG | 0.427823 | 4_1:-43487254 | Msa0548930:CDS |
| GGGCCTGTGAAGAGGTATAA+AGG | 0.429978 | 4_1:+43483241 | None:intergenic |
| ATTGTTTAGAATGTTCATTT+GGG | 0.452245 | 4_1:-43482922 | Msa0548930:three_prime_UTR |
| AATCGCGGATATTTCCATAA+AGG | 0.455333 | 4_1:-43487512 | Msa0548930:CDS |
| AATGAAGCTAGCCTTGGTTC+AGG | 0.458888 | 4_1:-43483265 | Msa0548930:three_prime_UTR |
| ATAACAGCACCTGCAAGGTC+AGG | 0.484107 | 4_1:+43487205 | None:intergenic |
| CGAATCCTTAGCATCACTCT+TGG | 0.489419 | 4_1:+43487342 | None:intergenic |
| TTGTATGACGAACTCCAATA+GGG | 0.490897 | 4_1:+43483128 | None:intergenic |
| CCTTATTGAATAATGACTCC+TGG | 0.499448 | 4_1:+43483203 | None:intergenic |
| GGTCCTTTATACCTCTTCAC+AGG | 0.505118 | 4_1:-43483244 | Msa0548930:three_prime_UTR |
| GGAACTTTGGCCCGAACCGT+TGG | 0.513323 | 4_1:+43487280 | None:intergenic |
| ACATGCACCCTACTTGGAAA+AGG | 0.516185 | 4_1:+43482874 | None:intergenic |
| GGTGGTATCTTATGGAAGGA+TGG | 0.518034 | 4_1:-43487451 | Msa0548930:CDS |
| AGGGTTATAGTCAAATGGAT+TGG | 0.535477 | 4_1:-43487249 | Msa0548930:CDS |
| AAAATGCCTGGTGGGTACCT+TGG | 0.553044 | 4_1:-43483305 | Msa0548930:CDS |
| TGTAGAGTGTAAGCAATGGC+TGG | 0.562076 | 4_1:-43482956 | Msa0548930:three_prime_UTR |
| TGAAGAAATGAAGCTAGCCT+TGG | 0.566041 | 4_1:-43483271 | Msa0548930:three_prime_UTR |
| ATCAACCAAGAGTGATGCTA+AGG | 0.568914 | 4_1:-43487347 | Msa0548930:CDS |
| GTTAGAAAGCACAAAACAGA+AGG | 0.581274 | 4_1:-43485745 | Msa0548930:CDS |
| TTCTGTTCTGACAACTTCTG+AGG | 0.595702 | 4_1:+43487319 | None:intergenic |
| TAATGGTGGTATCTTATGGA+AGG | 0.596595 | 4_1:-43487455 | Msa0548930:CDS |
| ATAGAAGAGGGCCTGTGAAG+AGG | 0.600977 | 4_1:+43483233 | None:intergenic |
| TCCTGGCAAGTAAATAGAAG+AGG | 0.605633 | 4_1:+43483220 | None:intergenic |
| TCTTCACTGACTTTCATCCA+AGG | 0.610470 | 4_1:+43483288 | None:intergenic |
| CAAGCTTGTTTCAGAAATCG+CGG | 0.617791 | 4_1:-43487527 | Msa0548930:intron |
| CCATATATGACGTTTCACCC+TGG | 0.621706 | 4_1:-43485679 | Msa0548930:CDS |
| CCTGGCAAGTAAATAGAAGA+GGG | 0.631704 | 4_1:+43483221 | None:intergenic |
| ACAGAATAACAGCACCTGCA+AGG | 0.634591 | 4_1:+43487200 | None:intergenic |
| AGTAGTAACAACAATAATGG+TGG | 0.644225 | 4_1:-43487469 | Msa0548930:CDS |
| GGTATAAAGGACCTGAACCA+AGG | 0.652448 | 4_1:+43483254 | None:intergenic |
| TCCTTGTAGAGTGTAAGCAA+TGG | 0.655152 | 4_1:-43482960 | Msa0548930:intron |
| ATTCCGCGTTAACCCAAGCA+TGG | 0.657038 | 4_1:+43483338 | None:intergenic |
| ATACCATGCTTGGGTTAACG+CGG | 0.662040 | 4_1:-43483341 | Msa0548930:CDS |
| ACAAAACAGAAGGTGAAATG+TGG | 0.673732 | 4_1:-43485735 | Msa0548930:CDS |
| ATGGTGATATATTGTAGACA+CGG | 0.675806 | 4_1:+43485698 | None:intergenic |
| TTTCATCCAAGGTACCCACC+AGG | 0.678591 | 4_1:+43483299 | None:intergenic |
| TATATGACGTTTCACCCTGG+AGG | 0.704322 | 4_1:-43485676 | Msa0548930:intron |
| GAAATGTGGACTGTATTGAA+AGG | 0.710255 | 4_1:-43485721 | Msa0548930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTCTAAATTATATCAA+AGG | + | chr4_1:43483439-43483458 | None:intergenic | 10.0% |
| !! | AAAAAATATTTAAAAAGTGA+GGG | + | chr4_1:43484860-43484879 | None:intergenic | 10.0% |
| !! | AAAAAAATATTTAAAAAGTG+AGG | + | chr4_1:43484861-43484880 | None:intergenic | 10.0% |
| !!! | TCACTTTTTAAATATTTTTT+TGG | - | chr4_1:43484860-43484879 | Msa0548930:intron | 10.0% |
| !! | TTTCTAAATAATACAAATTT+GGG | + | chr4_1:43487488-43487507 | None:intergenic | 10.0% |
| !! | ATTTCTAAATAATACAAATT+TGG | + | chr4_1:43487489-43487508 | None:intergenic | 10.0% |
| !!! | TAAAAACAATAGATTTTCAT+TGG | - | chr4_1:43483355-43483374 | Msa0548930:intron | 15.0% |
| !! | AAAAATATTTAAAAAGTGAG+GGG | + | chr4_1:43484859-43484878 | None:intergenic | 15.0% |
| !! | TATAGTTATGTACATATAAA+TGG | + | chr4_1:43485236-43485255 | None:intergenic | 15.0% |
| !!! | TTACAATTTTTAAGAATAAG+AGG | - | chr4_1:43485359-43485378 | Msa0548930:intron | 15.0% |
| !! | TAAATCCTAATATAAATATC+AGG | + | chr4_1:43485927-43485946 | None:intergenic | 15.0% |
| !! | TATTAGGATTTAAATTGATT+AGG | - | chr4_1:43485935-43485954 | Msa0548930:intron | 15.0% |
| !! | ACTTCTTAGAAAAAATTAAT+TGG | + | chr4_1:43486210-43486229 | None:intergenic | 15.0% |
| !! | TTGTATTATTTAGAAATTGA+AGG | - | chr4_1:43487492-43487511 | Msa0548930:CDS | 15.0% |
| !!! | TCATTTTCTCAAATTATTAC+CGG | + | chr4_1:43483005-43483024 | None:intergenic | 20.0% |
| !!! | GTTTACTTAGTATATTTTGT+TGG | - | chr4_1:43483232-43483251 | Msa0548930:three_prime_UTR | 20.0% |
| !!! | CTAATTTAAAATGACTTTGT+AGG | - | chr4_1:43483632-43483651 | Msa0548930:intron | 20.0% |
| !! | GATTAGATATTATTAGAACT+TGG | + | chr4_1:43484237-43484256 | None:intergenic | 20.0% |
| !! | AGAAAAAAGAATGGAATTAA+GGG | + | chr4_1:43484997-43485016 | None:intergenic | 20.0% |
| !! | AAGAAAAAAGAATGGAATTA+AGG | + | chr4_1:43484998-43485017 | None:intergenic | 20.0% |
| !!! | TTTCTTTTCACTTCAATTAA+CGG | - | chr4_1:43485012-43485031 | Msa0548930:intron | 20.0% |
| !! | AAAGAAAGCTAACATTTATA+AGG | + | chr4_1:43485109-43485128 | None:intergenic | 20.0% |
| !! | CAAACTTAAATAATACAGTA+CGG | + | chr4_1:43485728-43485747 | None:intergenic | 20.0% |
| !! | CAATTCCTGATATTTATATT+AGG | - | chr4_1:43485919-43485938 | Msa0548930:intron | 20.0% |
| !! | ATGTGCTATATTATTTATAG+AGG | - | chr4_1:43486005-43486024 | Msa0548930:intron | 20.0% |
| !! | TTCTATTACAAACATAAACA+GGG | + | chr4_1:43486127-43486146 | None:intergenic | 20.0% |
| !! | TTTCTATTACAAACATAAAC+AGG | + | chr4_1:43486128-43486147 | None:intergenic | 20.0% |
| !! | GTTTATGTTTGTAATAGAAA+TGG | - | chr4_1:43486128-43486147 | Msa0548930:intron | 20.0% |
| !! | TCTTAGAAAAAATTAATTGG+CGG | + | chr4_1:43486207-43486226 | None:intergenic | 20.0% |
| !!! | GTTACACATTTTTTTTGATA+TGG | - | chr4_1:43486444-43486463 | Msa0548930:intron | 20.0% |
| !! | TTCTATTATATACACAAACA+AGG | - | chr4_1:43486591-43486610 | Msa0548930:intron | 20.0% |
| !!! | AATATTTTAGATCTATGTGA+AGG | + | chr4_1:43486646-43486665 | None:intergenic | 20.0% |
| !!! | TGATTTTAGCATTAACTTAT+TGG | - | chr4_1:43487038-43487057 | Msa0548930:intron | 20.0% |
| !! | TTATGAATATGAATCTATGA+TGG | + | chr4_1:43487158-43487177 | None:intergenic | 20.0% |
| !! | GTGTTAGAATAAAAAAATAG+AGG | - | chr4_1:43487338-43487357 | Msa0548930:CDS | 20.0% |
| !!! | TTAACAAACACATTTTAAGT+AGG | + | chr4_1:43487550-43487569 | None:intergenic | 20.0% |
| !!! | AATTGTTTAGAATGTTCATT+TGG | - | chr4_1:43488284-43488303 | Msa0548930:intron | 20.0% |
| !!! | ATTGTTTAGAATGTTCATTT+GGG | - | chr4_1:43488285-43488304 | Msa0548930:intron | 20.0% |
| ! | AAATGGAAATGAAAAAAGAG+AGG | + | chr4_1:43482899-43482918 | None:intergenic | 25.0% |
| ! | ATGTAGAAATATCTTAGACA+CGG | - | chr4_1:43482956-43482975 | Msa0548930:three_prime_UTR | 25.0% |
| ! | ACATAATTCAGTGTAATCAT+AGG | - | chr4_1:43483024-43483043 | Msa0548930:three_prime_UTR | 25.0% |
| !!! | TTGTTTTTATCTATGAAGCA+TGG | - | chr4_1:43483462-43483481 | Msa0548930:intron | 25.0% |
| !!! | TTTTAAATTAGAAGAGCACA+TGG | + | chr4_1:43483623-43483642 | None:intergenic | 25.0% |
| !! | TGATTCTTCAAACTCTAAAA+AGG | - | chr4_1:43483788-43483807 | Msa0548930:intron | 25.0% |
| !! | TTCAAGTATTGTCAACAATA+TGG | + | chr4_1:43484077-43484096 | None:intergenic | 25.0% |
| ! | AGTTGAAAAATGAATATGTG+TGG | - | chr4_1:43484126-43484145 | Msa0548930:intron | 25.0% |
| ! | TATCATACTATCATAAGCAT+TGG | + | chr4_1:43484190-43484209 | None:intergenic | 25.0% |
| ! | TAGATATTATTAGAACTTGG+AGG | + | chr4_1:43484234-43484253 | None:intergenic | 25.0% |
| ! | TAATATCTAATCCCAATTGT+TGG | - | chr4_1:43484245-43484264 | Msa0548930:intron | 25.0% |
| !! | ATTTTACGTATAATCCGTAA+GGG | + | chr4_1:43484741-43484760 | None:intergenic | 25.0% |
| !! | TTTTTGGATATTTCTTTCCA+AGG | - | chr4_1:43484876-43484895 | Msa0548930:intron | 25.0% |
| ! | GAAAAAAGAATGGAATTAAG+GGG | + | chr4_1:43484996-43485015 | None:intergenic | 25.0% |
| ! | GAAGTGAAAAGAAAAAAGAA+TGG | + | chr4_1:43485006-43485025 | None:intergenic | 25.0% |
| ! | TGTACATAACTATATATCAG+AGG | - | chr4_1:43485242-43485261 | Msa0548930:intron | 25.0% |
| !!! | TTGTACTTGTTTTGTTATGT+TGG | - | chr4_1:43485275-43485294 | Msa0548930:intron | 25.0% |
| ! | ATTATATATGCATTTCCTGT+TGG | - | chr4_1:43485623-43485642 | Msa0548930:intron | 25.0% |
| ! | TTATATATGCATTTCCTGTT+GGG | - | chr4_1:43485624-43485643 | Msa0548930:intron | 25.0% |
| ! | TAGAAACAAACAAATGAAGT+AGG | + | chr4_1:43485755-43485774 | None:intergenic | 25.0% |
| ! | ACGAAAAGCTAAATATTCAA+TGG | + | chr4_1:43485792-43485811 | None:intergenic | 25.0% |
| !!! | TTTTCTAAGAAGTTTCTGTA+AGG | - | chr4_1:43486217-43486236 | Msa0548930:intron | 25.0% |
| !! | TGGCAAACATAATAAACTTT+TGG | - | chr4_1:43486464-43486483 | Msa0548930:intron | 25.0% |
| !!! | ACATAATAAACTTTTGGTTG+AGG | - | chr4_1:43486470-43486489 | Msa0548930:intron | 25.0% |
| !! | ATGATTTGTCATGTTTACTT+AGG | - | chr4_1:43486525-43486544 | Msa0548930:intron | 25.0% |
| ! | CTATTATAAGTATGAACAGA+GGG | + | chr4_1:43486802-43486821 | None:intergenic | 25.0% |
| ! | TCTATTATAAGTATGAACAG+AGG | + | chr4_1:43486803-43486822 | None:intergenic | 25.0% |
| ! | TTGGTTTATTAACACAAACA+AGG | - | chr4_1:43487057-43487076 | Msa0548930:intron | 25.0% |
| !! | ATGAATCTATGATGGTTTTT+AGG | + | chr4_1:43487150-43487169 | None:intergenic | 25.0% |
| !! | CTTAAAATGTGTTTGTTAAG+TGG | - | chr4_1:43487551-43487570 | Msa0548930:intron | 25.0% |
| ! | GGATATAAAAATACACATGT+AGG | + | chr4_1:43488210-43488229 | None:intergenic | 25.0% |
| !!! | ACATGTGTATTTTTATATCC+TGG | - | chr4_1:43488210-43488229 | Msa0548930:intron | 25.0% |
| !!! | TAATGACTTCACTTTTTGTC+AGG | - | chr4_1:43482866-43482885 | Msa0548930:three_prime_UTR | 30.0% |
| AGTGAATGAGGGTAATAAAA+TGG | + | chr4_1:43482916-43482935 | None:intergenic | 30.0% | |
| AGCTTAGACATCATAGTTTA+AGG | - | chr4_1:43483121-43483140 | Msa0548930:three_prime_UTR | 30.0% | |
| GTAAACTCTATGACTCTATT+TGG | + | chr4_1:43483218-43483237 | None:intergenic | 30.0% | |
| CACTTGCAAAAGTAAACTTT+AGG | - | chr4_1:43483325-43483344 | Msa0548930:CDS | 30.0% | |
| AGACTAATTCACACTACATA+CGG | - | chr4_1:43483389-43483408 | Msa0548930:intron | 30.0% | |
| TTATCTATGAAGCATGGATA+CGG | - | chr4_1:43483468-43483487 | Msa0548930:intron | 30.0% | |
| ATTTGAGGATTCTTCCTTTA+TGG | + | chr4_1:43483712-43483731 | None:intergenic | 30.0% | |
| AGCAGTAGTAACAACAATAA+TGG | - | chr4_1:43483735-43483754 | Msa0548930:intron | 30.0% | |
| AGTAGTAACAACAATAATGG+TGG | - | chr4_1:43483738-43483757 | Msa0548930:intron | 30.0% | |
| ACAATAATGGTGGTATCTTA+TGG | - | chr4_1:43483748-43483767 | Msa0548930:intron | 30.0% | |
| ! | TTCTTCAAACTCTAAAAAGG+AGG | - | chr4_1:43483791-43483810 | Msa0548930:intron | 30.0% |
| ! | TCTTCAAACTCTAAAAAGGA+GGG | - | chr4_1:43483792-43483811 | Msa0548930:intron | 30.0% |
| ! | TGACTATAACCCTTTTCAAA+AGG | + | chr4_1:43483951-43483970 | None:intergenic | 30.0% |
| TGAAAAGGGTTATAGTCAAA+TGG | - | chr4_1:43483953-43483972 | Msa0548930:intron | 30.0% | |
| !! | CTATCATAAGCATTGGAAAT+TGG | + | chr4_1:43484183-43484202 | None:intergenic | 30.0% |
| GGTCATATCAACTTTAGTAA+TGG | + | chr4_1:43484213-43484232 | None:intergenic | 30.0% | |
| ATAACACTTACTCTCAATCA+TGG | - | chr4_1:43484292-43484311 | Msa0548930:intron | 30.0% | |
| AACACTAATCGTAAAATCGT+AGG | + | chr4_1:43484348-43484367 | None:intergenic | 30.0% | |
| !! | TTTCACTGATTTAGGATTCT+GGG | + | chr4_1:43484393-43484412 | None:intergenic | 30.0% |
| !! | ATTTCACTGATTTAGGATTC+TGG | + | chr4_1:43484394-43484413 | None:intergenic | 30.0% |
| !! | GGATTTCATTTCACTGATTT+AGG | + | chr4_1:43484401-43484420 | None:intergenic | 30.0% |
| ATTAACGGAAGCGATTATAT+AGG | + | chr4_1:43484422-43484441 | None:intergenic | 30.0% | |
| ! | ATCGTGGATTTTACGATTAA+CGG | + | chr4_1:43484437-43484456 | None:intergenic | 30.0% |
| ! | TTTTACGTATAATCCGTAAG+GGG | + | chr4_1:43484740-43484759 | None:intergenic | 30.0% |
| ! | GATTTTACGTATAATCCGTA+AGG | + | chr4_1:43484742-43484761 | None:intergenic | 30.0% |
| AAATGAAAATCACACAGCAA+AGG | + | chr4_1:43484934-43484953 | None:intergenic | 30.0% | |
| CTAACATTTATAAGGAAGAG+TGG | + | chr4_1:43485101-43485120 | None:intergenic | 30.0% | |
| ATAAATGGTCTACAACTTTC+TGG | + | chr4_1:43485221-43485240 | None:intergenic | 30.0% | |
| ATGGTGATATATTGTAGACA+CGG | + | chr4_1:43485512-43485531 | None:intergenic | 30.0% | |
| TATATATGCATTTCCTGTTG+GGG | - | chr4_1:43485625-43485644 | Msa0548930:intron | 30.0% | |
| TACAGTACGGAATAACAAAA+AGG | + | chr4_1:43485715-43485734 | None:intergenic | 30.0% | |
| TGTTCATAGAGATTGACATA+TGG | + | chr4_1:43485827-43485846 | None:intergenic | 30.0% | |
| CATCCTAGAAAAAAATTCAG+TGG | - | chr4_1:43486674-43486693 | Msa0548930:intron | 30.0% | |
| ACAGATCTACAATCTTTACA+TGG | + | chr4_1:43486749-43486768 | None:intergenic | 30.0% | |
| ATAGTATGTTATAGCTTGAG+TGG | - | chr4_1:43486953-43486972 | Msa0548930:intron | 30.0% | |
| GCTAAAATCAATTGCAATGA+CGG | + | chr4_1:43487028-43487047 | None:intergenic | 30.0% | |
| !! | TTTTTAGGAATATGTCTCAC+CGG | + | chr4_1:43487135-43487154 | None:intergenic | 30.0% |
| TTCATATTCATAACCACCTT+CGG | - | chr4_1:43487165-43487184 | Msa0548930:intron | 30.0% | |
| ! | AATCTTACTAAGCTTTAGCT+TGG | - | chr4_1:43487309-43487328 | Msa0548930:CDS | 30.0% |
| ! | ATCTTACTAAGCTTTAGCTT+GGG | - | chr4_1:43487310-43487329 | Msa0548930:CDS | 30.0% |
| TATGTTGAACATCATATGTG+AGG | + | chr4_1:43487649-43487668 | None:intergenic | 30.0% | |
| TATCAGATAAATACCATGCT+TGG | - | chr4_1:43487856-43487875 | Msa0548930:intron | 30.0% | |
| ATCAGATAAATACCATGCTT+GGG | - | chr4_1:43487857-43487876 | Msa0548930:intron | 30.0% | |
| TCTGATTAAAGAATCCCTAT+TGG | - | chr4_1:43488065-43488084 | Msa0548930:intron | 30.0% | |
| ! | TAGAATGTTCATTTGGGTTA+TGG | - | chr4_1:43488291-43488310 | Msa0548930:intron | 30.0% |
| TCTCAAATTATTACCGGTGT+CGG | + | chr4_1:43482999-43483018 | None:intergenic | 35.0% | |
| AATCGCGGATATTTCCATAA+AGG | - | chr4_1:43483695-43483714 | Msa0548930:intron | 35.0% | |
| TAATGGTGGTATCTTATGGA+AGG | - | chr4_1:43483752-43483771 | Msa0548930:intron | 35.0% | |
| ! | TCTAAAAAGGAGGGTACAAT+TGG | - | chr4_1:43483801-43483820 | Msa0548930:intron | 35.0% |
| GAGTTCTGTTAAAAAGCCAA+CGG | - | chr4_1:43483911-43483930 | Msa0548930:intron | 35.0% | |
| !! | GCCAAAGTTCCTTTTGAAAA+GGG | - | chr4_1:43483939-43483958 | Msa0548930:intron | 35.0% |
| ! | ACCCTTTTCAAAAGGAACTT+TGG | + | chr4_1:43483943-43483962 | None:intergenic | 35.0% |
| AGGGTTATAGTCAAATGGAT+TGG | - | chr4_1:43483958-43483977 | Msa0548930:intron | 35.0% | |
| TTGAAAGAGTTAAGAGCTAC+TGG | - | chr4_1:43484092-43484111 | Msa0548930:intron | 35.0% | |
| ! | GATAGCTTTTGCCAACAATT+GGG | + | chr4_1:43484259-43484278 | None:intergenic | 35.0% |
| ! | AGATAGCTTTTGCCAACAAT+TGG | + | chr4_1:43484260-43484279 | None:intergenic | 35.0% |
| CAATCATGGTAGTCAAAATC+AGG | - | chr4_1:43484306-43484325 | Msa0548930:intron | 35.0% | |
| ! | ATGGAACGTTTTCAAATCGT+GGG | - | chr4_1:43484527-43484546 | Msa0548930:intron | 35.0% |
| AGAAACCCATTTCAGTAACT+CGG | - | chr4_1:43484554-43484573 | Msa0548930:intron | 35.0% | |
| TTAACCCGAGTTACTGAAAT+GGG | + | chr4_1:43484562-43484581 | None:intergenic | 35.0% | |
| AGTCTCACGAGTTACTAAAA+CGG | + | chr4_1:43484594-43484613 | None:intergenic | 35.0% | |
| CTAGTTTAAGTGCATCATGT+AGG | - | chr4_1:43484634-43484653 | Msa0548930:intron | 35.0% | |
| ATGTTGTTATGTTCCCCTTA+CGG | - | chr4_1:43484724-43484743 | Msa0548930:intron | 35.0% | |
| AGAGCAAGGTAGTAAAAATC+AGG | + | chr4_1:43484764-43484783 | None:intergenic | 35.0% | |
| AAAAGAATGGAATTAAGGGG+CGG | + | chr4_1:43484993-43485012 | None:intergenic | 35.0% | |
| AGAGCTTGAAACCAAAAGTA+GGG | + | chr4_1:43485047-43485066 | None:intergenic | 35.0% | |
| AACATCATGTATGTTGATCC+AGG | - | chr4_1:43485396-43485415 | Msa0548930:intron | 35.0% | |
| TATGTTGATCCAGGTCTAAA+AGG | - | chr4_1:43485405-43485424 | Msa0548930:intron | 35.0% | |
| GAACAGGAGACTAATTTCTA+TGG | - | chr4_1:43485434-43485453 | Msa0548930:intron | 35.0% | |
| ! | GTTAGAAAGCACAAAACAGA+AGG | - | chr4_1:43485462-43485481 | Msa0548930:intron | 35.0% |
| ACAAAACAGAAGGTGAAATG+TGG | - | chr4_1:43485472-43485491 | Msa0548930:intron | 35.0% | |
| ! | GAAATGTGGACTGTATTGAA+AGG | - | chr4_1:43485486-43485505 | Msa0548930:intron | 35.0% |
| !!! | AGTTGATAGTTTTACCTCCA+GGG | + | chr4_1:43485548-43485567 | None:intergenic | 35.0% |
| !! | AGGTGTTGATATGTTGATGA+AGG | - | chr4_1:43485655-43485674 | Msa0548930:intron | 35.0% |
| TGATTAGGATTAGAACTTGC+AGG | - | chr4_1:43485950-43485969 | Msa0548930:intron | 35.0% | |
| ATTCAACATGTTACCAGATC+AGG | - | chr4_1:43486061-43486080 | Msa0548930:intron | 35.0% | |
| !! | ATAGAAATGGATTGTACACC+AGG | - | chr4_1:43486141-43486160 | Msa0548930:intron | 35.0% |
| AGAAAAAATTAATTGGCGGC+TGG | + | chr4_1:43486203-43486222 | None:intergenic | 35.0% | |
| GATTGTAGATCTGTGTGAAT+GGG | - | chr4_1:43486239-43486258 | Msa0548930:intron | 35.0% | |
| !!! | CTGCCACTGAATTTTTTTCT+AGG | + | chr4_1:43486680-43486699 | None:intergenic | 35.0% |
| AGATTGTAGATCTGTGTGAA+TGG | - | chr4_1:43486754-43486773 | Msa0548930:intron | 35.0% | |
| !! | GCAAAGACAAAAGTGTTCAT+CGG | + | chr4_1:43487197-43487216 | None:intergenic | 35.0% |
| TAGAGAAAAGAGAAACAGCA+GGG | + | chr4_1:43487260-43487279 | None:intergenic | 35.0% | |
| TTTCTCTACATTCCATCAAC+CGG | - | chr4_1:43487272-43487291 | Msa0548930:CDS | 35.0% | |
| !! | AGATTTCAGCTTGTTACAAC+CGG | + | chr4_1:43487294-43487313 | None:intergenic | 35.0% |
| ATCACCTGATTTAGACAAAC+AGG | - | chr4_1:43487389-43487408 | Msa0548930:intron | 35.0% | |
| TGATCCTGTTTGTCTAAATC+AGG | + | chr4_1:43487396-43487415 | None:intergenic | 35.0% | |
| TCTTAGTTATGTTCCATGTG+AGG | - | chr4_1:43487448-43487467 | Msa0548930:CDS | 35.0% | |
| TTATGTTCCATGTGAGGAAT+TGG | - | chr4_1:43487454-43487473 | Msa0548930:CDS | 35.0% | |
| CATAATTCCAATTCCTCACA+TGG | + | chr4_1:43487464-43487483 | None:intergenic | 35.0% | |
| TCTTAGTTTCCCAAAATGCT+TGG | - | chr4_1:43487583-43487602 | Msa0548930:intron | 35.0% | |
| ! | TGTTTCAAAGTACTTGCAGT+TGG | - | chr4_1:43487684-43487703 | Msa0548930:intron | 35.0% |
| TCTAAGCAACAACTGAATCA+TGG | + | chr4_1:43487739-43487758 | None:intergenic | 35.0% | |
| ! | TGAAGTACTATGTGAAGTGT+GGG | + | chr4_1:43487786-43487805 | None:intergenic | 35.0% |
| ATTCTTACTGGAAAAATGCC+TGG | - | chr4_1:43487890-43487909 | Msa0548930:intron | 35.0% | |
| CCTTATTGAATAATGACTCC+TGG | + | chr4_1:43488007-43488026 | None:intergenic | 35.0% | |
| CCAGGAGTCATTATTCAATA+AGG | - | chr4_1:43488004-43488023 | Msa0548930:intron | 35.0% | |
| TTGTATGACGAACTCCAATA+GGG | + | chr4_1:43488082-43488101 | None:intergenic | 35.0% | |
| ATTGTATGACGAACTCCAAT+AGG | + | chr4_1:43488083-43488102 | None:intergenic | 35.0% | |
| AGTACAGTTGTTCTGTAATC+TGG | - | chr4_1:43488108-43488127 | Msa0548930:intron | 35.0% | |
| TTACCCTCATTCACTTGTTC+AGG | - | chr4_1:43482921-43482940 | Msa0548930:three_prime_UTR | 40.0% | |
| CTTCCTGAACAAGTGAATGA+GGG | + | chr4_1:43482927-43482946 | None:intergenic | 40.0% | |
| ACTTCCTGAACAAGTGAATG+AGG | + | chr4_1:43482928-43482947 | None:intergenic | 40.0% | |
| ! | CAAGCTTGTTTCAGAAATCG+CGG | - | chr4_1:43483680-43483699 | Msa0548930:intron | 40.0% |
| GTTACTACTGCTTGCATTTG+AGG | + | chr4_1:43483727-43483746 | None:intergenic | 40.0% | |
| ATCAACCAAGAGTGATGCTA+AGG | - | chr4_1:43483860-43483879 | Msa0548930:intron | 40.0% | |
| TTCTGTTCTGACAACTTCTG+AGG | + | chr4_1:43483891-43483910 | None:intergenic | 40.0% | |
| CTGTTAAAAAGCCAACGGTT+CGG | - | chr4_1:43483916-43483935 | Msa0548930:intron | 40.0% | |
| TGTTAAAAAGCCAACGGTTC+GGG | - | chr4_1:43483917-43483936 | Msa0548930:intron | 40.0% | |
| !! | GGCCAAAGTTCCTTTTGAAA+AGG | - | chr4_1:43483938-43483957 | Msa0548930:intron | 40.0% |
| ! | GTGTGGCATGTATCAGTTTT+TGG | - | chr4_1:43484143-43484162 | Msa0548930:intron | 40.0% |
| TACGATTAGTGTTGCCTTGA+AGG | - | chr4_1:43484355-43484374 | Msa0548930:intron | 40.0% | |
| TAAAATCCACGATCTTCGAG+TGG | - | chr4_1:43484444-43484463 | Msa0548930:intron | 40.0% | |
| ! | GATGGAACGTTTTCAAATCG+TGG | - | chr4_1:43484526-43484545 | Msa0548930:intron | 40.0% |
| GAAACCCATTTCAGTAACTC+GGG | - | chr4_1:43484555-43484574 | Msa0548930:intron | 40.0% | |
| GTTAACCCGAGTTACTGAAA+TGG | + | chr4_1:43484563-43484582 | None:intergenic | 40.0% | |
| GTCTCACGAGTTACTAAAAC+GGG | + | chr4_1:43484593-43484612 | None:intergenic | 40.0% | |
| CTAGTCTCAAACAACTAACC+AGG | + | chr4_1:43484618-43484637 | None:intergenic | 40.0% | |
| TCAATTCCAGAGGCCAAATT+TGG | + | chr4_1:43484792-43484811 | None:intergenic | 40.0% | |
| !! | ATTTGGCCTCTGGAATTGAA+TGG | - | chr4_1:43484793-43484812 | Msa0548930:intron | 40.0% |
| GATCAACCATTCAATTCCAG+AGG | + | chr4_1:43484802-43484821 | None:intergenic | 40.0% | |
| !! | AGTTTTAACGTAGCAGAGCT+CGG | - | chr4_1:43484830-43484849 | Msa0548930:intron | 40.0% |
| AAAGAATGGAATTAAGGGGC+GGG | + | chr4_1:43484992-43485011 | None:intergenic | 40.0% | |
| CAGAGCTTGAAACCAAAAGT+AGG | + | chr4_1:43485048-43485067 | None:intergenic | 40.0% | |
| ! | ACAACTTTCTGGTCAGACAA+AGG | + | chr4_1:43485210-43485229 | None:intergenic | 40.0% |
| !!! | GAGTTGATAGTTTTACCTCC+AGG | + | chr4_1:43485549-43485568 | None:intergenic | 40.0% |
| TTTCCTGTTGGGGAAAAATC+AGG | - | chr4_1:43485635-43485654 | Msa0548930:intron | 40.0% | |
| ! | TGATATGTTGATGAAGGCAG+TGG | - | chr4_1:43485661-43485680 | Msa0548930:intron | 40.0% |
| ! | GATATGTTGATGAAGGCAGT+GGG | - | chr4_1:43485662-43485681 | Msa0548930:intron | 40.0% |
| TCTCTGTGCATAGATTGCAT+TGG | - | chr4_1:43485849-43485868 | Msa0548930:intron | 40.0% | |
| CACATGATCAATACCTGATC+TGG | + | chr4_1:43486077-43486096 | None:intergenic | 40.0% | |
| !! | GGTATTGATCATGTGACTAG+TGG | - | chr4_1:43486082-43486101 | Msa0548930:intron | 40.0% |
| TTGTACACCAGGAAGTTTCT+AGG | - | chr4_1:43486152-43486171 | Msa0548930:intron | 40.0% | |
| GGATTGTAGATCTGTGTGAA+TGG | - | chr4_1:43486238-43486257 | Msa0548930:intron | 40.0% | |
| CTTTACATGGTATCAGAGCA+TGG | + | chr4_1:43486736-43486755 | None:intergenic | 40.0% | |
| !! | AAGACAAAAGTGTTCATCGG+AGG | + | chr4_1:43487194-43487213 | None:intergenic | 40.0% |
| GTAGAGAAAAGAGAAACAGC+AGG | + | chr4_1:43487261-43487280 | None:intergenic | 40.0% | |
| !! | TTACTAAGCTTTAGCTTGGG+AGG | - | chr4_1:43487313-43487332 | Msa0548930:CDS | 40.0% |
| TAAGTAGGCACATTGATCTC+TGG | + | chr4_1:43487535-43487554 | None:intergenic | 40.0% | |
| TTCCCAAAATGCTTGGAAGT+TGG | - | chr4_1:43487590-43487609 | Msa0548930:intron | 40.0% | |
| TCCCAAAATGCTTGGAAGTT+GGG | - | chr4_1:43487591-43487610 | Msa0548930:intron | 40.0% | |
| ! | TCCCAACTTCCAAGCATTTT+GGG | + | chr4_1:43487595-43487614 | None:intergenic | 40.0% |
| ! | ATCCCAACTTCCAAGCATTT+TGG | + | chr4_1:43487596-43487615 | None:intergenic | 40.0% |
| ! | TTCAAAGTACTTGCAGTTGG+TGG | - | chr4_1:43487687-43487706 | Msa0548930:intron | 40.0% |
| ! | AGTTGTTGCTTAGATTCCCT+GGG | - | chr4_1:43487745-43487764 | Msa0548930:intron | 40.0% |
| ! | GAAGTACTATGTGAAGTGTG+GGG | + | chr4_1:43487785-43487804 | None:intergenic | 40.0% |
| ! | GTGAAGTACTATGTGAAGTG+TGG | + | chr4_1:43487787-43487806 | None:intergenic | 40.0% |
| TTACTGGAAAAATGCCTGGT+GGG | - | chr4_1:43487894-43487913 | Msa0548930:intron | 40.0% | |
| !! | TCTTCACTGACTTTCATCCA+AGG | + | chr4_1:43487922-43487941 | None:intergenic | 40.0% |
| ! | TGAAGAAATGAAGCTAGCCT+TGG | - | chr4_1:43487936-43487955 | Msa0548930:intron | 40.0% |
| CCTGGCAAGTAAATAGAAGA+GGG | + | chr4_1:43487989-43488008 | None:intergenic | 40.0% | |
| TCCTGGCAAGTAAATAGAAG+AGG | + | chr4_1:43487990-43488009 | None:intergenic | 40.0% | |
| TCCTTGTAGAGTGTAAGCAA+TGG | - | chr4_1:43488247-43488266 | Msa0548930:intron | 40.0% | |
| ATGGCAAAAATGAAGAGCTC+AGG | - | chr4_1:43488310-43488329 | Msa0548930:intron | 40.0% | |
| ATACGGACACTAGACACAGA+CGG | - | chr4_1:43483485-43483504 | Msa0548930:intron | 45.0% | |
| TATGAAGCACGAACACTCCT+CGG | + | chr4_1:43483583-43483602 | None:intergenic | 45.0% | |
| TTTGTAGGTGAGTACACCTG+CGG | - | chr4_1:43483647-43483666 | Msa0548930:intron | 45.0% | |
| GGTGGTATCTTATGGAAGGA+TGG | - | chr4_1:43483756-43483775 | Msa0548930:intron | 45.0% | |
| CGAATCCTTAGCATCACTCT+TGG | + | chr4_1:43483868-43483887 | None:intergenic | 45.0% | |
| ACAGAATAACAGCACCTGCA+AGG | + | chr4_1:43484010-43484029 | None:intergenic | 45.0% | |
| ! | CTGATTTAGGATTCTGGGTG+TGG | + | chr4_1:43484388-43484407 | None:intergenic | 45.0% |
| TTCTACCACTGCAACCAGAA+TGG | + | chr4_1:43484476-43484495 | None:intergenic | 45.0% | |
| !! | CACTCTAGGGTTAGGAAAGA+TGG | - | chr4_1:43484508-43484527 | Msa0548930:intron | 45.0% |
| TAGTAACTCGTGAGACTTCC+TGG | - | chr4_1:43484597-43484616 | Msa0548930:intron | 45.0% | |
| ! | CAAATTTGGAGCAGAGAGCA+AGG | + | chr4_1:43484778-43484797 | None:intergenic | 45.0% |
| CTTGCTCTCTGCTCCAAATT+TGG | - | chr4_1:43484776-43484795 | Msa0548930:intron | 45.0% | |
| !! | GTTTTAACGTAGCAGAGCTC+GGG | - | chr4_1:43484831-43484850 | Msa0548930:intron | 45.0% |
| CACTAGGGTGAAATCAACCT+TGG | + | chr4_1:43484896-43484915 | None:intergenic | 45.0% | |
| ! | ACATCGCATTCAAGGCACTA+GGG | + | chr4_1:43484911-43484930 | None:intergenic | 45.0% |
| AGCAAAGGACATCGCATTCA+AGG | + | chr4_1:43484919-43484938 | None:intergenic | 45.0% | |
| AGCTCTGCTAGTCACTCAAT+TGG | - | chr4_1:43485061-43485080 | Msa0548930:intron | 45.0% | |
| ! | TTCGACTGTCCTTTTAGACC+TGG | + | chr4_1:43485417-43485436 | None:intergenic | 45.0% |
| GTCTAAAAGGACAGTCGAAC+AGG | - | chr4_1:43485418-43485437 | Msa0548930:intron | 45.0% | |
| CCAGGGTGAAACGTCATATA+TGG | + | chr4_1:43485531-43485550 | None:intergenic | 45.0% | |
| CCATATATGACGTTTCACCC+TGG | - | chr4_1:43485528-43485547 | Msa0548930:intron | 45.0% | |
| TATATGACGTTTCACCCTGG+AGG | - | chr4_1:43485531-43485550 | Msa0548930:intron | 45.0% | |
| ! | ACACCTGATTTTTCCCCAAC+AGG | + | chr4_1:43485641-43485660 | None:intergenic | 45.0% |
| GTCTTTGCTACAATCACCTC+CGG | - | chr4_1:43487209-43487228 | Msa0548930:intron | 45.0% | |
| !! | AGCTTGTTACAACCGGTTGA+TGG | + | chr4_1:43487287-43487306 | None:intergenic | 45.0% |
| ! | CAGTTGTTGCTTAGATTCCC+TGG | - | chr4_1:43487744-43487763 | Msa0548930:intron | 45.0% |
| GGAATGGATGACAAAACCCA+GGG | + | chr4_1:43487764-43487783 | None:intergenic | 45.0% | |
| ACTATGTGAAGTGTGGGGAA+TGG | + | chr4_1:43487780-43487799 | None:intergenic | 45.0% | |
| ATACCATGCTTGGGTTAACG+CGG | - | chr4_1:43487866-43487885 | Msa0548930:intron | 45.0% | |
| GGTTAACGCGGAATTCTTAC+TGG | - | chr4_1:43487878-43487897 | Msa0548930:intron | 45.0% | |
| CTTACTGGAAAAATGCCTGG+TGG | - | chr4_1:43487893-43487912 | Msa0548930:intron | 45.0% | |
| !! | AATGAAGCTAGCCTTGGTTC+AGG | - | chr4_1:43487942-43487961 | Msa0548930:intron | 45.0% |
| GGTATAAAGGACCTGAACCA+AGG | + | chr4_1:43487956-43487975 | None:intergenic | 45.0% | |
| GGTCCTTTATACCTCTTCAC+AGG | - | chr4_1:43487963-43487982 | Msa0548930:intron | 45.0% | |
| CCCTCTTCTATTTACTTGCC+AGG | - | chr4_1:43487986-43488005 | Msa0548930:intron | 45.0% | |
| AGGATAGCTTACACTCTACC+AGG | + | chr4_1:43488231-43488250 | None:intergenic | 45.0% | |
| GCCATTGCTTACACTCTACA+AGG | + | chr4_1:43488251-43488270 | None:intergenic | 45.0% | |
| TGTAGAGTGTAAGCAATGGC+TGG | - | chr4_1:43488251-43488270 | Msa0548930:intron | 45.0% | |
| ACATGCACCCTACTTGGAAA+AGG | + | chr4_1:43488336-43488355 | None:intergenic | 45.0% | |
| !! | TGCATGTCATGCGTTGATTC+AGG | - | chr4_1:43488349-43488368 | Msa0548930:intron | 45.0% |
| !!! | TTTTTTTTAATAAAACAATA+TGG | + | chr4_1:43484036-43484055 | None:intergenic | 5.0% |
| GATGTCTAAGCTACGATGCC+CGG | + | chr4_1:43483113-43483132 | None:intergenic | 50.0% | |
| !! | GAGGAGTGTTCGTGCTTCAT+AGG | - | chr4_1:43483582-43483601 | Msa0548930:intron | 50.0% |
| ! | AGCTTGTTTGTTTCCACCGC+AGG | + | chr4_1:43483666-43483685 | None:intergenic | 50.0% |
| ATAACAGCACCTGCAAGGTC+AGG | + | chr4_1:43484005-43484024 | None:intergenic | 50.0% | |
| GGTGTGGTCATGATCCTTCA+AGG | + | chr4_1:43484372-43484391 | None:intergenic | 50.0% | |
| CAGAATCCACTCGAAGATCG+TGG | + | chr4_1:43484453-43484472 | None:intergenic | 50.0% | |
| ! | TCGAGTGGATTCTGCCATTC+TGG | - | chr4_1:43484459-43484478 | Msa0548930:intron | 50.0% |
| ! | TTCTGCCATTCTGGTTGCAG+TGG | - | chr4_1:43484468-43484487 | Msa0548930:intron | 50.0% |
| TCTGCTCCAAATTTGGCCTC+TGG | - | chr4_1:43484783-43484802 | Msa0548930:intron | 50.0% | |
| ! | GACATCGCATTCAAGGCACT+AGG | + | chr4_1:43484912-43484931 | None:intergenic | 50.0% |
| ! | GGATGTGCTCTCCCTACTTT+TGG | - | chr4_1:43485033-43485052 | Msa0548930:intron | 50.0% |
| GCAGCTTCCTAGAAACTTCC+TGG | + | chr4_1:43486162-43486181 | None:intergenic | 50.0% | |
| ! | AGTTTCTAGGAAGCTGCTCG+TGG | - | chr4_1:43486165-43486184 | Msa0548930:intron | 50.0% |
| ! | GTATGAACAGAGGGTGTGCT+TGG | + | chr4_1:43486793-43486812 | None:intergenic | 50.0% |
| GGAATATGTCTCACCGGAGA+AGG | + | chr4_1:43487129-43487148 | None:intergenic | 50.0% | |
| TGTTCATCGGAGGATTCCGA+AGG | + | chr4_1:43487184-43487203 | None:intergenic | 50.0% | |
| CTGGAAAGTTGTGGTGCAAC+CGG | + | chr4_1:43487231-43487250 | None:intergenic | 50.0% | |
| GGGCTGTATCTGGAAAGTTG+TGG | + | chr4_1:43487240-43487259 | None:intergenic | 50.0% | |
| AGAAACAGCAGGGCTGTATC+TGG | + | chr4_1:43487250-43487269 | None:intergenic | 50.0% | |
| GGGAATGGATGACAAAACCC+AGG | + | chr4_1:43487765-43487784 | None:intergenic | 50.0% | |
| ATTCCGCGTTAACCCAAGCA+TGG | + | chr4_1:43487872-43487891 | None:intergenic | 50.0% | |
| ! | AAAATGCCTGGTGGGTACCT+TGG | - | chr4_1:43487902-43487921 | Msa0548930:intron | 50.0% |
| ! | TTTCATCCAAGGTACCCACC+AGG | + | chr4_1:43487911-43487930 | None:intergenic | 50.0% |
| ! | GGGCCTGTGAAGAGGTATAA+AGG | + | chr4_1:43487969-43487988 | None:intergenic | 50.0% |
| ATAGAAGAGGGCCTGTGAAG+AGG | + | chr4_1:43487977-43487996 | None:intergenic | 50.0% | |
| ! | AGCTCAGGCCTTTTCCAAGT+AGG | - | chr4_1:43488325-43488344 | Msa0548930:intron | 50.0% |
| ! | GCTCAGGCCTTTTCCAAGTA+GGG | - | chr4_1:43488326-43488345 | Msa0548930:intron | 50.0% |
| CTTAGACACGGACACCGACA+CGG | - | chr4_1:43482968-43482987 | Msa0548930:intron | 55.0% | |
| GCACGAACACTCCTCGGATT+AGG | + | chr4_1:43483577-43483596 | None:intergenic | 55.0% | |
| CGAACTCATCCTGACCTTGC+AGG | - | chr4_1:43483993-43484012 | Msa0548930:intron | 55.0% | |
| TGCAGTGGTAGAAGTCGCGA+CGG | - | chr4_1:43484483-43484502 | Msa0548930:intron | 55.0% | |
| AAGGGGCGGGAGAAGAAACA+GGG | + | chr4_1:43484979-43484998 | None:intergenic | 55.0% | |
| TAAGGGGCGGGAGAAGAAAC+AGG | + | chr4_1:43484980-43484999 | None:intergenic | 55.0% | |
| AATTCAGTGGCAGCCGACAG+TGG | - | chr4_1:43486687-43486706 | Msa0548930:intron | 55.0% | |
| GCGAGCTTTCGTACCACTGT+CGG | + | chr4_1:43486703-43486722 | None:intergenic | 55.0% | |
| ACAACCAGTTGCGCCTTCTC+CGG | - | chr4_1:43487113-43487132 | Msa0548930:intron | 55.0% | |
| TCATCGGAGGATTCCGAAGG+TGG | + | chr4_1:43487181-43487200 | None:intergenic | 55.0% | |
| GAAAGTTGTGGTGCAACCGG+AGG | + | chr4_1:43487228-43487247 | None:intergenic | 55.0% | |
| CGCATGACATGCACCCTACT+TGG | + | chr4_1:43488342-43488361 | None:intergenic | 55.0% | |
| TCCTGATGTCGGACAGGCGT+CGG | + | chr4_1:43483076-43483095 | None:intergenic | 60.0% | |
| CTCCTCGGGTGTCCTGATGT+CGG | + | chr4_1:43483087-43483106 | None:intergenic | 60.0% | |
| TACGATGCCCGGACACTCCT+CGG | + | chr4_1:43483102-43483121 | None:intergenic | 60.0% | |
| GACACGACACGCCTAATCCG+AGG | - | chr4_1:43483563-43483582 | Msa0548930:intron | 60.0% | |
| GTAGGTGAGTACACCTGCGG+TGG | - | chr4_1:43483650-43483669 | Msa0548930:intron | 60.0% | |
| GGAACTTTGGCCCGAACCGT+TGG | + | chr4_1:43483930-43483949 | None:intergenic | 60.0% | |
| !! | CGGTGTCGGTGTGTCCGTGT+CGG | + | chr4_1:43482985-43483004 | None:intergenic | 65.0% |
| CGACACGGACACACCGACAC+CGG | - | chr4_1:43482983-43483002 | Msa0548930:intron | 65.0% | |
| !! | TGTCGGACAGGCGTCGGTGT+CGG | + | chr4_1:43483070-43483089 | None:intergenic | 65.0% |
| ACCGACGCCTGTCCGACATC+AGG | - | chr4_1:43483072-43483091 | Msa0548930:three_prime_UTR | 65.0% | |
| CGGGTGTCCTGATGTCGGAC+AGG | + | chr4_1:43483082-43483101 | None:intergenic | 65.0% | |
| GTCCGACATCAGGACACCCG+AGG | - | chr4_1:43483082-43483101 | Msa0548930:three_prime_UTR | 65.0% | |
| !! | CAGGACACCCGAGGAGTGTC+CGG | - | chr4_1:43483091-43483110 | Msa0548930:three_prime_UTR | 65.0% |
| !! | AGGACACCCGAGGAGTGTCC+GGG | - | chr4_1:43483092-43483111 | Msa0548930:three_prime_UTR | 65.0% |
| ACGATGCCCGGACACTCCTC+GGG | + | chr4_1:43483101-43483120 | None:intergenic | 65.0% | |
| AAGTCGCGACGGCGCACTCT+AGG | - | chr4_1:43484494-43484513 | Msa0548930:intron | 65.0% | |
| AGTCGCGACGGCGCACTCTA+GGG | - | chr4_1:43484495-43484514 | Msa0548930:intron | 65.0% | |
| !! | CGACGGCGCACTCTAGGGTT+AGG | - | chr4_1:43484500-43484519 | Msa0548930:intron | 65.0% |
| ! | CTCACCGGAGAAGGCGCAAC+TGG | + | chr4_1:43487120-43487139 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 43482855 | 43488374 | 43482855 | ID=Msa0548930;Name=Msa0548930 |
| chr4_1 | mRNA | 43482855 | 43488374 | 43482855 | ID=Msa0548930-mRNA-1;Parent=Msa0548930;Name=Msa0548930-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.4|0.5|1|0.2|0.16|6|416|176 |
| chr4_1 | exon | 43482855 | 43482977 | 43482855 | ID=Msa0548930-mRNA-1:exon:11245;Parent=Msa0548930-mRNA-1 |
| chr4_1 | exon | 43482998 | 43483367 | 43482998 | ID=Msa0548930-mRNA-1:exon:11244;Parent=Msa0548930-mRNA-1 |
| chr4_1 | exon | 43485677 | 43485811 | 43485677 | ID=Msa0548930-mRNA-1:exon:11243;Parent=Msa0548930-mRNA-1 |
| chr4_1 | exon | 43487215 | 43487390 | 43487215 | ID=Msa0548930-mRNA-1:exon:11242;Parent=Msa0548930-mRNA-1 |
| chr4_1 | exon | 43487400 | 43487535 | 43487400 | ID=Msa0548930-mRNA-1:exon:11241;Parent=Msa0548930-mRNA-1 |
| chr4_1 | exon | 43488368 | 43488374 | 43488368 | ID=Msa0548930-mRNA-1:exon:11240;Parent=Msa0548930-mRNA-1 |
| chr4_1 | CDS | 43488368 | 43488374 | 43488368 | ID=Msa0548930-mRNA-1:cds;Parent=Msa0548930-mRNA-1 |
| chr4_1 | CDS | 43487400 | 43487535 | 43487400 | ID=Msa0548930-mRNA-1:cds;Parent=Msa0548930-mRNA-1 |
| chr4_1 | CDS | 43487215 | 43487390 | 43487215 | ID=Msa0548930-mRNA-1:cds;Parent=Msa0548930-mRNA-1 |
| chr4_1 | CDS | 43485677 | 43485811 | 43485677 | ID=Msa0548930-mRNA-1:cds;Parent=Msa0548930-mRNA-1 |
| chr4_1 | CDS | 43483291 | 43483367 | 43483291 | ID=Msa0548930-mRNA-1:cds;Parent=Msa0548930-mRNA-1 |
| chr4_1 | three_prime_UTR | 43482998 | 43483290 | 43482998 | ID=Msa0548930-mRNA-1:three_prime_utr;Parent=Msa0548930-mRNA-1 |
| chr4_1 | three_prime_UTR | 43482855 | 43482977 | 43482855 | ID=Msa0548930-mRNA-1:three_prime_utr;Parent=Msa0548930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
