Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0761570 | sp|Q9ZRF1|MTDH_FRAAN | 79.320 | 353 | 73 | 0 | 6 | 358 | 4 | 356 | 0.0 | 559 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0761570 | A0A2K3MPD7 | 82.778 | 360 | 62 | 0 | 1 | 360 | 1 | 360 | 0.0 | 615 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025570 | Msa0761570 | 0.811429 | 7.033612e-51 | -8.615850e-47 |
| Msa0069480 | Msa0761570 | 0.804761 | 1.849571e-49 | -8.615850e-47 |
| Msa0073110 | Msa0761570 | 0.806039 | 9.983113e-50 | -8.615850e-47 |
| Msa0620340 | Msa0761570 | 0.802595 | 5.207529e-49 | -8.615850e-47 |
| Msa0655370 | Msa0761570 | 0.805342 | 1.398447e-49 | -8.615850e-47 |
| Msa0658120 | Msa0761570 | 0.820973 | 5.166564e-53 | -8.615850e-47 |
| Msa0702970 | Msa0761570 | 0.813924 | 2.000641e-51 | -8.615850e-47 |
| Msa0721010 | Msa0761570 | 0.813367 | 2.652913e-51 | -8.615850e-47 |
| Msa0733560 | Msa0761570 | 0.811483 | 6.846176e-51 | -8.615850e-47 |
| Msa0761570 | Msa0761830 | 0.811844 | 5.713815e-51 | -8.615850e-47 |
| Msa0761570 | Msa0792410 | 0.801076 | 1.067904e-48 | -8.615850e-47 |
| Msa0761570 | Msa0794100 | 0.813719 | 2.219637e-51 | -8.615850e-47 |
| Msa0761570 | Msa0812220 | 0.810471 | 1.134170e-50 | -8.615850e-47 |
| Msa0761570 | Msa0817690 | 0.804440 | 2.158396e-49 | -8.615850e-47 |
| Msa0761570 | Msa0828350 | 0.801485 | 8.808189e-49 | -8.615850e-47 |
| Msa0761570 | Msa0829990 | 0.806575 | 7.695443e-50 | -8.615850e-47 |
| Msa0761570 | Msa0893840 | 0.810477 | 1.130774e-50 | -8.615850e-47 |
| Msa0761570 | Msa0936630 | 0.803275 | 3.767419e-49 | -8.615850e-47 |
| Msa0761570 | Msa1066150 | 0.806703 | 7.230825e-50 | -8.615850e-47 |
| Msa0761570 | Msa1108560 | 0.800224 | 1.593405e-48 | -8.615850e-47 |
| Msa0761570 | Msa1147010 | 0.806032 | 1.001627e-49 | -8.615850e-47 |
| Msa0761570 | Msa1183870 | 0.801045 | 1.083441e-48 | -8.615850e-47 |
| Msa0761570 | Msa1191270 | 0.803124 | 4.049250e-49 | -8.615850e-47 |
| Msa0761570 | Msa1225890 | 0.806669 | 7.353026e-50 | -8.615850e-47 |
| Msa0761570 | Msa1265570 | 0.807351 | 5.273616e-50 | -8.615850e-47 |
| Msa0761570 | Msa1321010 | 0.823243 | 1.538500e-53 | -8.615850e-47 |
| Msa0761570 | Msa1334670 | 0.805955 | 1.039593e-49 | -8.615850e-47 |
| Msa0761570 | Msa1361980 | 0.803286 | 3.747971e-49 | -8.615850e-47 |
| Msa0761570 | Msa1365230 | 0.808381 | 3.184708e-50 | -8.615850e-47 |
| Msa0761570 | Msa1368420 | 0.808053 | 3.740535e-50 | -8.615850e-47 |
| Msa0761570 | Msa1383220 | 0.806962 | 6.376910e-50 | -8.615850e-47 |
| Msa0761570 | Msa1395050 | 0.804185 | 2.438992e-49 | -8.615850e-47 |
| Msa0761570 | Msa1417220 | 0.800650 | 1.304590e-48 | -8.615850e-47 |
| Msa0761570 | Msa1455360 | 0.801781 | 7.657519e-49 | -8.615850e-47 |
| Msa0761570 | Msa1459610 | 0.801334 | 9.458683e-49 | -8.615850e-47 |
| Msa0761570 | Msa1462610 | 0.800720 | 1.262492e-48 | -8.615850e-47 |
| Msa0121320 | Msa0761570 | 0.818226 | 2.189616e-52 | -8.615850e-47 |
| Msa0210850 | Msa0761570 | 0.801601 | 8.336908e-49 | -8.615850e-47 |
| Msa0366510 | Msa0761570 | 0.818601 | 1.800701e-52 | -8.615850e-47 |
| Msa0369990 | Msa0761570 | 0.803600 | 3.226605e-49 | -8.615850e-47 |
| Msa0386910 | Msa0761570 | 0.817386 | 3.387556e-52 | -8.615850e-47 |
| Msa0391600 | Msa0761570 | 0.806684 | 7.300449e-50 | -8.615850e-47 |
| Msa0423200 | Msa0761570 | 0.808993 | 2.357346e-50 | -8.615850e-47 |
| Msa0423220 | Msa0761570 | 0.804221 | 2.397402e-49 | -8.615850e-47 |
| Msa0459930 | Msa0761570 | 0.809102 | 2.233698e-50 | -8.615850e-47 |
| Msa0244310 | Msa0761570 | 0.801884 | 7.291913e-49 | -8.615850e-47 |
| Msa0282830 | Msa0761570 | 0.806653 | 7.411107e-50 | -8.615850e-47 |
| Msa0307630 | Msa0761570 | 0.804937 | 1.699663e-49 | -8.615850e-47 |
| Msa0327890 | Msa0761570 | 0.801521 | 8.659056e-49 | -8.615850e-47 |
| Msa0354550 | Msa0761570 | 0.806504 | 7.968202e-50 | -8.615850e-47 |
| Msa0496070 | Msa0761570 | 0.802800 | 4.723838e-49 | -8.615850e-47 |
| Msa0523720 | Msa0761570 | 0.805562 | 1.257303e-49 | -8.615850e-47 |
| Msa0561830 | Msa0761570 | 0.809565 | 1.776647e-50 | -8.615850e-47 |
| Msa0583390 | Msa0761570 | 0.805731 | 1.158954e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0761570 | MtrunA17_Chr5g0411841 | 79.167 | 360 | 75 | 0 | 1 | 360 | 1 | 360 | 0.0 | 578 |
| Msa0761570 | MtrunA17_Chr5g0411821 | 78.771 | 358 | 76 | 0 | 1 | 358 | 1 | 358 | 0.0 | 577 |
| Msa0761570 | MtrunA17_Chr5g0411931 | 78.889 | 360 | 76 | 0 | 1 | 360 | 1 | 360 | 0.0 | 577 |
| Msa0761570 | MtrunA17_Chr4g0064291 | 78.056 | 360 | 79 | 0 | 1 | 360 | 1 | 360 | 0.0 | 570 |
| Msa0761570 | MtrunA17_Chr5g0411881 | 78.249 | 354 | 77 | 0 | 8 | 361 | 9 | 362 | 0.0 | 562 |
| Msa0761570 | MtrunA17_Chr5g0411871 | 77.904 | 353 | 78 | 0 | 8 | 360 | 23 | 375 | 0.0 | 562 |
| Msa0761570 | MtrunA17_Chr5g0411801 | 75.278 | 360 | 89 | 0 | 1 | 360 | 33 | 392 | 0.0 | 560 |
| Msa0761570 | MtrunA17_Chr5g0411901 | 78.028 | 355 | 78 | 0 | 7 | 361 | 8 | 362 | 0.0 | 559 |
| Msa0761570 | MtrunA17_Chr8g0367151 | 78.056 | 360 | 79 | 0 | 1 | 360 | 1 | 360 | 0.0 | 550 |
| Msa0761570 | MtrunA17_Chr5g0411811 | 76.389 | 360 | 85 | 0 | 1 | 360 | 1 | 360 | 0.0 | 549 |
| Msa0761570 | MtrunA17_Chr5g0411911 | 75.284 | 352 | 87 | 0 | 10 | 361 | 12 | 363 | 0.0 | 538 |
| Msa0761570 | MtrunA17_Chr5g0411791 | 78.659 | 328 | 70 | 0 | 33 | 360 | 7 | 334 | 4.28e-175 | 489 |
| Msa0761570 | MtrunA17_Chr8g0383721 | 64.067 | 359 | 128 | 1 | 1 | 359 | 1 | 358 | 1.78e-158 | 448 |
| Msa0761570 | MtrunA17_Chr5g0411941 | 63.188 | 345 | 127 | 0 | 14 | 358 | 14 | 358 | 2.07e-149 | 426 |
| Msa0761570 | MtrunA17_Chr1g0157021 | 60.172 | 349 | 138 | 1 | 8 | 355 | 7 | 355 | 1.44e-143 | 410 |
| Msa0761570 | MtrunA17_Chr1g0208031 | 52.770 | 343 | 162 | 0 | 11 | 353 | 9 | 351 | 7.07e-122 | 355 |
| Msa0761570 | MtrunA17_Chr2g0279791 | 55.202 | 346 | 153 | 2 | 14 | 358 | 62 | 406 | 1.25e-120 | 354 |
| Msa0761570 | MtrunA17_Chr2g0279801 | 53.846 | 208 | 83 | 3 | 152 | 358 | 19 | 214 | 1.47e-58 | 189 |
| Msa0761570 | MtrunA17_Chr5g0411851 | 94.366 | 71 | 4 | 0 | 1 | 71 | 1 | 71 | 2.93e-44 | 148 |
| Msa0761570 | MtrunA17_Chr5g0411861 | 96.923 | 65 | 2 | 0 | 297 | 361 | 1 | 65 | 2.48e-38 | 131 |
| Msa0761570 | MtrunA17_Chr8g0385221 | 27.609 | 297 | 183 | 10 | 10 | 278 | 51 | 343 | 2.65e-21 | 94.4 |
| Msa0761570 | MtrunA17_Chr3g0125961 | 24.064 | 374 | 248 | 11 | 11 | 354 | 12 | 379 | 2.73e-19 | 88.2 |
| Msa0761570 | MtrunA17_Chr3g0125911 | 24.451 | 364 | 240 | 10 | 11 | 344 | 12 | 370 | 4.31e-19 | 87.8 |
| Msa0761570 | MtrunA17_Chr3g0125941 | 24.033 | 362 | 240 | 10 | 13 | 344 | 15 | 371 | 2.98e-17 | 82.4 |
| Msa0761570 | MtrunA17_Chr4g0021211 | 25.490 | 306 | 204 | 9 | 38 | 322 | 60 | 362 | 6.31e-16 | 78.6 |
| Msa0761570 | MtrunA17_Chr5g0419681 | 24.925 | 333 | 211 | 12 | 38 | 338 | 35 | 360 | 2.90e-14 | 73.2 |
| Msa0761570 | MtrunA17_Chr1g0183131 | 24.926 | 337 | 222 | 10 | 1 | 312 | 1 | 331 | 1.03e-13 | 71.6 |
| Msa0761570 | MtrunA17_Chr7g0242291 | 25.788 | 349 | 199 | 15 | 39 | 341 | 48 | 382 | 8.34e-13 | 68.9 |
| Msa0761570 | MtrunA17_Chr7g0262421 | 24.159 | 327 | 217 | 9 | 11 | 312 | 13 | 333 | 1.58e-12 | 68.2 |
| Msa0761570 | MtrunA17_Chr6g0474141 | 23.022 | 278 | 191 | 7 | 25 | 290 | 29 | 295 | 3.71e-12 | 67.0 |
| Msa0761570 | MtrunA17_Chr7g0242301 | 26.647 | 334 | 182 | 17 | 39 | 341 | 13 | 314 | 6.99e-12 | 65.9 |
| Msa0761570 | MtrunA17_Chr3g0118441 | 24.662 | 296 | 195 | 9 | 38 | 307 | 40 | 333 | 6.13e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0761570 | AT4G37990.1 | 71.225 | 351 | 101 | 0 | 11 | 361 | 7 | 357 | 6.41e-170 | 478 |
| Msa0761570 | AT4G37980.1 | 69.231 | 351 | 108 | 0 | 11 | 361 | 7 | 357 | 1.19e-169 | 477 |
| Msa0761570 | AT4G39330.1 | 64.426 | 357 | 127 | 0 | 1 | 357 | 1 | 357 | 4.22e-167 | 471 |
| Msa0761570 | AT4G37970.1 | 63.380 | 355 | 130 | 0 | 6 | 360 | 7 | 361 | 1.97e-164 | 464 |
| Msa0761570 | AT2G21890.1 | 61.383 | 347 | 133 | 1 | 12 | 357 | 6 | 352 | 5.21e-154 | 438 |
| Msa0761570 | AT2G21730.1 | 61.782 | 348 | 131 | 2 | 12 | 357 | 6 | 353 | 2.36e-153 | 436 |
| Msa0761570 | AT4G39330.2 | 63.455 | 301 | 110 | 0 | 1 | 301 | 1 | 301 | 4.87e-134 | 385 |
| Msa0761570 | AT4G37980.2 | 68.641 | 287 | 90 | 0 | 11 | 297 | 7 | 293 | 2.95e-131 | 377 |
| Msa0761570 | AT4G37970.4 | 62.284 | 289 | 109 | 0 | 6 | 294 | 7 | 295 | 1.36e-125 | 363 |
| Msa0761570 | AT1G72680.1 | 53.061 | 343 | 160 | 1 | 16 | 358 | 14 | 355 | 1.01e-118 | 348 |
| Msa0761570 | AT3G19450.1 | 51.445 | 346 | 168 | 0 | 11 | 356 | 9 | 354 | 1.03e-110 | 328 |
| Msa0761570 | AT4G34230.1 | 51.445 | 346 | 168 | 0 | 8 | 353 | 5 | 350 | 6.26e-101 | 302 |
| Msa0761570 | AT4G34230.2 | 51.156 | 346 | 169 | 0 | 8 | 353 | 5 | 350 | 5.09e-100 | 300 |
| Msa0761570 | AT4G37970.3 | 61.250 | 240 | 93 | 0 | 6 | 245 | 7 | 246 | 5.17e-100 | 296 |
| Msa0761570 | AT4G37970.2 | 61.603 | 237 | 91 | 0 | 6 | 242 | 7 | 243 | 4.42e-99 | 294 |
| Msa0761570 | AT5G63620.2 | 25.517 | 290 | 188 | 7 | 15 | 278 | 58 | 345 | 1.65e-19 | 89.7 |
| Msa0761570 | AT5G63620.1 | 25.517 | 290 | 188 | 7 | 15 | 278 | 58 | 345 | 1.81e-19 | 89.7 |
| Msa0761570 | AT5G63620.3 | 26.506 | 249 | 160 | 5 | 15 | 242 | 58 | 304 | 1.19e-18 | 85.9 |
| Msa0761570 | AT5G43940.1 | 25.816 | 337 | 219 | 10 | 1 | 312 | 1 | 331 | 3.09e-17 | 82.8 |
| Msa0761570 | AT5G43940.2 | 26.087 | 299 | 193 | 8 | 39 | 312 | 48 | 343 | 5.30e-17 | 82.0 |
| Msa0761570 | AT1G22430.2 | 27.425 | 299 | 182 | 11 | 39 | 307 | 42 | 335 | 1.58e-16 | 80.5 |
| Msa0761570 | AT1G22430.1 | 27.425 | 299 | 182 | 11 | 39 | 307 | 42 | 335 | 1.58e-16 | 80.5 |
| Msa0761570 | AT1G77120.1 | 23.238 | 383 | 260 | 12 | 1 | 354 | 1 | 378 | 1.93e-16 | 80.1 |
| Msa0761570 | AT1G22440.1 | 26.578 | 301 | 182 | 11 | 39 | 307 | 40 | 333 | 9.46e-16 | 78.2 |
| Msa0761570 | AT1G22430.3 | 29.146 | 199 | 122 | 6 | 39 | 219 | 42 | 239 | 7.22e-15 | 75.1 |
| Msa0761570 | AT1G22430.4 | 29.146 | 199 | 122 | 6 | 39 | 219 | 42 | 239 | 9.10e-15 | 74.3 |
| Msa0761570 | AT1G22430.5 | 29.146 | 199 | 122 | 6 | 39 | 219 | 42 | 239 | 9.10e-15 | 74.3 |
| Msa0761570 | AT1G64710.2 | 24.675 | 308 | 201 | 10 | 39 | 318 | 13 | 317 | 1.17e-14 | 74.7 |
| Msa0761570 | AT1G64710.1 | 24.405 | 336 | 220 | 11 | 11 | 318 | 11 | 340 | 1.18e-14 | 75.1 |
| Msa0761570 | AT4G22110.2 | 26.688 | 311 | 169 | 12 | 39 | 307 | 43 | 336 | 9.49e-14 | 72.4 |
| Msa0761570 | AT4G22110.1 | 26.688 | 311 | 169 | 12 | 39 | 307 | 43 | 336 | 9.49e-14 | 72.4 |
| Msa0761570 | AT4G22110.3 | 29.714 | 175 | 105 | 4 | 39 | 196 | 43 | 216 | 4.32e-13 | 69.3 |
| Msa0761570 | AT5G51970.1 | 23.970 | 267 | 182 | 6 | 36 | 290 | 40 | 297 | 5.05e-13 | 70.1 |
| Msa0761570 | AT5G51970.2 | 23.970 | 267 | 182 | 6 | 36 | 290 | 40 | 297 | 5.05e-13 | 70.1 |
Find 110 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATACTTATTGAAATTTA+AGG | 0.106575 | 5_2:-19054430 | None:intergenic |
| AAACATTGCAAATGTTTATT+TGG | 0.170951 | 5_2:-19054477 | None:intergenic |
| TATAGCCCTCTTATATATTA+TGG | 0.179321 | 5_2:+19053544 | Msa0761570:CDS |
| GTAAAATTTGCCAAAGCTTT+TGG | 0.190975 | 5_2:+19053628 | Msa0761570:CDS |
| GCCCAACCAAAGGCCTTCTT+TGG | 0.253742 | 5_2:-19051048 | None:intergenic |
| TTCTTTGGATGCTCGTATTC+AGG | 0.264086 | 5_2:-19051033 | None:intergenic |
| CTTGGGTGGGTTGGGCCATA+TGG | 0.281149 | 5_2:+19053603 | Msa0761570:CDS |
| GTAAATCAATTAGGGGTAAG+AGG | 0.298660 | 5_2:-19053973 | None:intergenic |
| GGTAACTCAAGAGGCTTCTC+TGG | 0.324759 | 5_2:-19054031 | None:intergenic |
| GTGGTTGGCTTGGGTGGGTT+GGG | 0.339828 | 5_2:+19053595 | Msa0761570:CDS |
| TCATGTGGGCGTGGTTGGCT+TGG | 0.340992 | 5_2:+19053585 | Msa0761570:CDS |
| TTTACTTCTTATAGGGAAAC+AGG | 0.345430 | 5_2:+19051946 | Msa0761570:intron |
| GGATGTGCCCCATCCGTTCT+TGG | 0.349233 | 5_2:-19052031 | None:intergenic |
| TCCACCTACCCATTAGTTCT+AGG | 0.353777 | 5_2:+19052051 | Msa0761570:CDS |
| AGAGAAGCCTCTTGAGTTAC+CGG | 0.354673 | 5_2:+19054033 | Msa0761570:CDS |
| CAAGACTGTCATCACAATCT+TGG | 0.357268 | 5_2:-19053348 | None:intergenic |
| TTATACTTATTGAAATTTAA+GGG | 0.360181 | 5_2:-19054429 | None:intergenic |
| CATGTGGGCGTGGTTGGCTT+GGG | 0.365484 | 5_2:+19053586 | Msa0761570:CDS |
| CGTGGTTGGCTTGGGTGGGT+TGG | 0.369888 | 5_2:+19053594 | Msa0761570:CDS |
| ATAGGTATAACTTCAATATC+AGG | 0.375109 | 5_2:-19054316 | None:intergenic |
| AAACTTTACCCTAGAACTAA+TGG | 0.382569 | 5_2:-19052060 | None:intergenic |
| CACATTAACTCCAAAAGCTT+TGG | 0.387902 | 5_2:-19053638 | None:intergenic |
| TTAGAAATGAATCAGCTTTG+AGG | 0.399461 | 5_2:-19053708 | None:intergenic |
| TGATTTACCTGCATTTGATC+TGG | 0.407863 | 5_2:-19053742 | None:intergenic |
| GCATCAAGTGGTAAGGCATT+AGG | 0.409198 | 5_2:-19053487 | None:intergenic |
| GTGGTAAGGCATTAGGTATA+TGG | 0.415205 | 5_2:-19053480 | None:intergenic |
| CCCCTTTCAATTTCTCCAGA+AGG | 0.415467 | 5_2:+19051097 | Msa0761570:CDS |
| CTAGGCTGCAACGGGGACTT+TGG | 0.420020 | 5_2:+19053916 | Msa0761570:intron |
| GATATTTAACATCTGATTTG+AGG | 0.424894 | 5_2:-19054369 | None:intergenic |
| GGTCTTCATGTGGGCGTGGT+TGG | 0.426930 | 5_2:+19053580 | Msa0761570:CDS |
| TCCAAAGAAGGCCTTTGGTT+GGG | 0.430490 | 5_2:+19051047 | Msa0761570:CDS |
| GTGGGCGTGGTTGGCTTGGG+TGG | 0.430638 | 5_2:+19053589 | Msa0761570:CDS |
| TAGTGGAATGGGAGGGATGA+AGG | 0.430679 | 5_2:+19054249 | Msa0761570:CDS |
| ATCTCATGGAAAGCTTGTAT+TGG | 0.439344 | 5_2:+19054000 | Msa0761570:CDS |
| TTGAGTCCATAATATATAAG+AGG | 0.440641 | 5_2:-19053550 | None:intergenic |
| AGGGCTATAAACAGTGATTC+CGG | 0.443059 | 5_2:-19053530 | None:intergenic |
| ATGGTAGCTGGTAGTGGAAT+GGG | 0.444794 | 5_2:+19054238 | Msa0761570:CDS |
| ATTGCAAATGTTTATTTGGA+AGG | 0.450398 | 5_2:-19054473 | None:intergenic |
| GAGCATCCAAAGAAGGCCTT+TGG | 0.455342 | 5_2:+19051042 | Msa0761570:CDS |
| ACAAAATTTATACTGACATA+TGG | 0.456413 | 5_2:+19053382 | Msa0761570:CDS |
| AACTTTACCCTAGAACTAAT+GGG | 0.458420 | 5_2:-19052059 | None:intergenic |
| TGGGCAGCTAGAGATCCTTC+TGG | 0.459135 | 5_2:+19051066 | Msa0761570:CDS |
| TATCGATTTGTGATTGACAT+TGG | 0.459329 | 5_2:+19054388 | Msa0761570:CDS |
| TGATATTGAAGTTATACCTA+TGG | 0.461411 | 5_2:+19054318 | Msa0761570:CDS |
| TGGGCGTGGTTGGCTTGGGT+GGG | 0.463250 | 5_2:+19053590 | Msa0761570:CDS |
| GTGGGTGTGGGATGCTTAGT+TGG | 0.470176 | 5_2:+19053310 | Msa0761570:CDS |
| ATTGATTTACTAAAATCTCA+TGG | 0.489141 | 5_2:+19053986 | Msa0761570:CDS |
| AGTGATGGAAGTATCACATA+TGG | 0.490148 | 5_2:+19053415 | Msa0761570:CDS |
| CATTCAAAGTGTTGTACTGC+GGG | 0.490748 | 5_2:+19051983 | Msa0761570:CDS |
| AATTACAGGCACGAAATTGT+TGG | 0.492254 | 5_2:+19053235 | Msa0761570:intron |
| TCCACATGGCCAAGAACGGA+TGG | 0.501341 | 5_2:+19052022 | Msa0761570:CDS |
| ATATGCTTACCCACTAGTAA+AGG | 0.502268 | 5_2:-19054061 | None:intergenic |
| TAAATCAATTAGGGGTAAGA+GGG | 0.509447 | 5_2:-19053972 | None:intergenic |
| AATGGTAGCTGGTAGTGGAA+TGG | 0.509954 | 5_2:+19054237 | Msa0761570:CDS |
| GTTGCTCCTCTCCTTTGCGC+CGG | 0.514121 | 5_2:+19053511 | Msa0761570:CDS |
| AACCTTCTGGAGAAATTGAA+AGG | 0.514629 | 5_2:-19051099 | None:intergenic |
| GTAACTCAAGAGGCTTCTCT+GGG | 0.523989 | 5_2:-19054030 | None:intergenic |
| ACCTTCTGGAGAAATTGAAA+GGG | 0.532153 | 5_2:-19051098 | None:intergenic |
| ATCCAAAGAAGGCCTTTGGT+TGG | 0.536152 | 5_2:+19051046 | Msa0761570:CDS |
| CACATGGCCAAGAACGGATG+GGG | 0.541448 | 5_2:+19052024 | Msa0761570:CDS |
| CCCACTAGTAAAGGCCATGC+CGG | 0.544245 | 5_2:-19054052 | None:intergenic |
| CCTGCATTTGATCTGGATCA+CGG | 0.546647 | 5_2:-19053735 | None:intergenic |
| GCTGCAACGGGGACTTTGGA+TGG | 0.547247 | 5_2:+19053920 | Msa0761570:CDS |
| CCACCTACCCATTAGTTCTA+GGG | 0.549562 | 5_2:+19052052 | Msa0761570:CDS |
| TGAATACGAGCATCCAAAGA+AGG | 0.550894 | 5_2:+19051035 | Msa0761570:CDS |
| ACCGGCATGGCCTTTACTAG+TGG | 0.552437 | 5_2:+19054051 | Msa0761570:CDS |
| CAACAAGCCTGGTCTTCATG+TGG | 0.557723 | 5_2:+19053570 | Msa0761570:CDS |
| GGCGCAAAGGAGAGGAGCAA+CGG | 0.560469 | 5_2:-19053509 | None:intergenic |
| CATGGAAAGCTTGTATTGGT+TGG | 0.560486 | 5_2:+19054004 | Msa0761570:CDS |
| TTTCAAAGTTGATGACAAAG+TGG | 0.561295 | 5_2:+19053291 | Msa0761570:CDS |
| TATTATGGACTCAACAAGCC+TGG | 0.561737 | 5_2:+19053559 | Msa0761570:CDS |
| CCACATGGCCAAGAACGGAT+GGG | 0.561885 | 5_2:+19052023 | Msa0761570:CDS |
| GCCTGGTCTTCATGTGGGCG+TGG | 0.564812 | 5_2:+19053576 | Msa0761570:CDS |
| TTCAAAGTTGATGACAAAGT+GGG | 0.565826 | 5_2:+19053292 | Msa0761570:CDS |
| AGCAACGGCATCAAGTGGTA+AGG | 0.566534 | 5_2:-19053494 | None:intergenic |
| ATCCGTTCTTGGCCATGTGG+AGG | 0.568436 | 5_2:-19052020 | None:intergenic |
| AGTTGATGACAAAGTGGGTG+TGG | 0.569131 | 5_2:+19053297 | Msa0761570:CDS |
| CCGGCATGGCCTTTACTAGT+GGG | 0.570249 | 5_2:+19054052 | Msa0761570:CDS |
| ACCACGCCCACATGAAGACC+AGG | 0.576005 | 5_2:-19053577 | None:intergenic |
| ATCTCTAGCTGCCCAACCAA+AGG | 0.576625 | 5_2:-19051058 | None:intergenic |
| CCCTAGAACTAATGGGTAGG+TGG | 0.579945 | 5_2:-19052052 | None:intergenic |
| AAACAGTGATTCCGGCGCAA+AGG | 0.583315 | 5_2:-19053522 | None:intergenic |
| TATGGTGCTAAATATAGTGA+TGG | 0.589474 | 5_2:+19053400 | Msa0761570:CDS |
| GACCTCCACATGGCCAAGAA+CGG | 0.590217 | 5_2:+19052018 | Msa0761570:CDS |
| AACAAGCCTGGTCTTCATGT+GGG | 0.590776 | 5_2:+19053571 | Msa0761570:CDS |
| GTGATTCCGGCGCAAAGGAG+AGG | 0.596204 | 5_2:-19053517 | None:intergenic |
| TGAGTCCATAATATATAAGA+GGG | 0.600060 | 5_2:-19053549 | None:intergenic |
| GTAGCTGGTAGTGGAATGGG+AGG | 0.609728 | 5_2:+19054241 | Msa0761570:CDS |
| GCTGTATTGACATAATCCAT+AGG | 0.609776 | 5_2:-19054334 | None:intergenic |
| CCGTGATCCAGATCAAATGC+AGG | 0.609815 | 5_2:+19053735 | Msa0761570:CDS |
| GGCCATGCCGGTAACTCAAG+AGG | 0.610420 | 5_2:-19054040 | None:intergenic |
| CCCATCCGTTCTTGGCCATG+TGG | 0.610999 | 5_2:-19052023 | None:intergenic |
| GGATTATGTCAATACAGCAA+TGG | 0.623261 | 5_2:+19054339 | Msa0761570:CDS |
| GTTGGTGTAGTGACTGAGGT+GGG | 0.627215 | 5_2:+19053253 | Msa0761570:CDS |
| TGGAGGCTACTCTGACTCGA+TGG | 0.628568 | 5_2:+19053435 | Msa0761570:CDS |
| AAAGGGGAGAGAACACCAGA+AGG | 0.635132 | 5_2:-19051081 | None:intergenic |
| GATGGAAGTATCACATATGG+AGG | 0.637694 | 5_2:+19053418 | Msa0761570:CDS |
| GTTGATGACAAAGTGGGTGT+GGG | 0.640763 | 5_2:+19053298 | Msa0761570:CDS |
| AGAGGAGCAACGGCATCAAG+TGG | 0.648951 | 5_2:-19053499 | None:intergenic |
| ATGCCACACGGACCTCCACA+TGG | 0.649847 | 5_2:+19052008 | Msa0761570:CDS |
| CCTTCTGGAGAAATTGAAAG+GGG | 0.653235 | 5_2:-19051097 | None:intergenic |
| TTACCCTAGAACTAATGGGT+AGG | 0.654865 | 5_2:-19052055 | None:intergenic |
| TGTTGGTGTAGTGACTGAGG+TGG | 0.664351 | 5_2:+19053252 | Msa0761570:CDS |
| AGCCTCTTGAGTTACCGGCA+TGG | 0.673664 | 5_2:+19054038 | Msa0761570:CDS |
| GTACTGCGGGATATGCCACA+CGG | 0.688920 | 5_2:+19051996 | Msa0761570:CDS |
| GCATTCAAAGTGTTGTACTG+CGG | 0.697031 | 5_2:+19051982 | Msa0761570:CDS |
| TAGCTGGTAGTGGAATGGGA+GGG | 0.704913 | 5_2:+19054242 | Msa0761570:CDS |
| TGGCCATGTGGAGGTCCGTG+TGG | 0.712135 | 5_2:-19052011 | None:intergenic |
| AATTGTTGGTGTAGTGACTG+AGG | 0.753175 | 5_2:+19053249 | Msa0761570:CDS |
| TAACTCAAGAGGCTTCTCTG+GGG | 0.760143 | 5_2:-19054029 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTAGTTAAATATTTATTA+TGG | - | chr5_2:19051558-19051577 | None:intergenic | 10.0% |
| !! | TTATTAAATTTACTTCTTAT+AGG | + | chr5_2:19051938-19051957 | Msa0761570:intron | 10.0% |
| !! | TATTAAATTTACTTCTTATA+GGG | + | chr5_2:19051939-19051958 | Msa0761570:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTTTGTCA+AGG | - | chr5_2:19052238-19052257 | None:intergenic | 10.0% |
| !! | AAGATAAAATAATTTATGTT+TGG | - | chr5_2:19052509-19052528 | None:intergenic | 10.0% |
| !! | TTATACTTATTGAAATTTAA+GGG | - | chr5_2:19054432-19054451 | None:intergenic | 10.0% |
| !!! | ATTTGAAGTAACAATTAAAT+AGG | + | chr5_2:19051380-19051399 | Msa0761570:intron | 15.0% |
| !! | TCAAAAAAAAAAAAAAATCC+AGG | + | chr5_2:19051430-19051449 | Msa0761570:intron | 15.0% |
| !!! | AATTATCATTAATTTTTCGA+TGG | + | chr5_2:19051639-19051658 | Msa0761570:intron | 15.0% |
| !! | AATAATCATCATGATTATAA+GGG | - | chr5_2:19051889-19051908 | None:intergenic | 15.0% |
| !! | TAATAATCATCATGATTATA+AGG | - | chr5_2:19051890-19051909 | None:intergenic | 15.0% |
| !!! | GGATTTTTTAAAAAAAATGT+TGG | - | chr5_2:19052999-19053018 | None:intergenic | 15.0% |
| !! | TCAAAAAAAAAAAAAGATGT+TGG | - | chr5_2:19053020-19053039 | None:intergenic | 15.0% |
| !!! | AACATCTTTTTTTTTTTTTG+AGG | + | chr5_2:19053019-19053038 | Msa0761570:intron | 15.0% |
| !!! | ACATCTTTTTTTTTTTTTGA+GGG | + | chr5_2:19053020-19053039 | Msa0761570:intron | 15.0% |
| !!! | GTATATTTTTTTTTTCAACT+CGG | + | chr5_2:19053786-19053805 | Msa0761570:intron | 15.0% |
| !!! | ATAAATGTTGATAATTTTCT+AGG | + | chr5_2:19053898-19053917 | Msa0761570:intron | 15.0% |
| !!! | AGATTTTAGTAAATCAATTA+GGG | - | chr5_2:19053984-19054003 | None:intergenic | 15.0% |
| !!! | TTAATATTTTGATGTATTGT+AGG | + | chr5_2:19054208-19054227 | Msa0761570:intron | 15.0% |
| !!! | TAATATTTTGATGTATTGTA+GGG | + | chr5_2:19054209-19054228 | Msa0761570:intron | 15.0% |
| !! | CTTATACTTATTGAAATTTA+AGG | - | chr5_2:19054433-19054452 | None:intergenic | 15.0% |
| !! | AAATATATACCAAAAATCAA+TGG | - | chr5_2:19054623-19054642 | None:intergenic | 15.0% |
| !! | AATAGGAACAAAAAATTTCT+AGG | + | chr5_2:19051397-19051416 | Msa0761570:intron | 20.0% |
| !! | TGATAGCTAAAAATGAAAAA+GGG | + | chr5_2:19051457-19051476 | Msa0761570:intron | 20.0% |
| !!! | AGTACTATTACATTTTTGTT+TGG | + | chr5_2:19051574-19051593 | Msa0761570:intron | 20.0% |
| !! | AAATCATTTAATCTCTGTTA+AGG | + | chr5_2:19051673-19051692 | Msa0761570:intron | 20.0% |
| !! | TTTAGATCTAAATAATTAGG+TGG | - | chr5_2:19051830-19051849 | None:intergenic | 20.0% |
| !! | CACTTTAGATCTAAATAATT+AGG | - | chr5_2:19051833-19051852 | None:intergenic | 20.0% |
| !!! | AAGGAAAAATTTTATCACAA+AGG | - | chr5_2:19051860-19051879 | None:intergenic | 20.0% |
| !!! | TTTGTGATAAAATTTTTCCT+TGG | + | chr5_2:19051859-19051878 | Msa0761570:intron | 20.0% |
| !!! | TTGTGATAAAATTTTTCCTT+GGG | + | chr5_2:19051860-19051879 | Msa0761570:intron | 20.0% |
| !! | ATTCAAATATCAGATAAAGA+GGG | - | chr5_2:19052290-19052309 | None:intergenic | 20.0% |
| !!! | TTCTTCAATTTTCTCAAATA+AGG | - | chr5_2:19052407-19052426 | None:intergenic | 20.0% |
| !! | ATTATTAACAAGGGATAATT+TGG | - | chr5_2:19052601-19052620 | None:intergenic | 20.0% |
| !!! | AGAGTAATGTTTAACTTATT+TGG | - | chr5_2:19052846-19052865 | None:intergenic | 20.0% |
| !! | AATTGTAGTATATAAGATGT+TGG | - | chr5_2:19053056-19053075 | None:intergenic | 20.0% |
| !!! | AATGAATTTGTTTTGGTAAT+CGG | - | chr5_2:19053192-19053211 | None:intergenic | 20.0% |
| !! | ACAAAATTTATACTGACATA+TGG | + | chr5_2:19053382-19053401 | Msa0761570:CDS | 20.0% |
| !! | AAAAAAAATATACATAGACC+TGG | - | chr5_2:19053779-19053798 | None:intergenic | 20.0% |
| !!! | GATTTTAGTAAATCAATTAG+GGG | - | chr5_2:19053983-19054002 | None:intergenic | 20.0% |
| !!! | GAGATTTTAGTAAATCAATT+AGG | - | chr5_2:19053985-19054004 | None:intergenic | 20.0% |
| !!! | ATTGATTTACTAAAATCTCA+TGG | + | chr5_2:19053986-19054005 | Msa0761570:CDS | 20.0% |
| !! | AAACATTGCAAATGTTTATT+TGG | - | chr5_2:19054480-19054499 | None:intergenic | 20.0% |
| ! | GTGATAGCTAAAAATGAAAA+AGG | + | chr5_2:19051456-19051475 | Msa0761570:intron | 25.0% |
| !! | ACTTATTCCTCAAAATGTTT+TGG | - | chr5_2:19051506-19051525 | None:intergenic | 25.0% |
| !! | TGTTAAGGCTAACAATTTTT+GGG | + | chr5_2:19051688-19051707 | Msa0761570:intron | 25.0% |
| !!! | TTTGGACTTTTTCAGATATT+AGG | - | chr5_2:19051740-19051759 | None:intergenic | 25.0% |
| !! | AAGTAGAGTTTTCTTAAACA+TGG | - | chr5_2:19052125-19052144 | None:intergenic | 25.0% |
| ! | AACTCTACTTACATAAGTAA+CGG | + | chr5_2:19052135-19052154 | Msa0761570:intron | 25.0% |
| ! | GAATATATCAGTCATACATA+TGG | + | chr5_2:19052157-19052176 | Msa0761570:intron | 25.0% |
| ! | CATTCAAATATCAGATAAAG+AGG | - | chr5_2:19052291-19052310 | None:intergenic | 25.0% |
| ! | CTCAAATATCTATTTGAACT+TGG | - | chr5_2:19052352-19052371 | None:intergenic | 25.0% |
| !! | TTTGAGAAATCATCAAGTTT+TGG | + | chr5_2:19052366-19052385 | Msa0761570:intron | 25.0% |
| !! | TCAAATAAGGTACCAAAATA+GGG | - | chr5_2:19052394-19052413 | None:intergenic | 25.0% |
| ! | ATTTATCTATTAGAAAGGAG+GGG | - | chr5_2:19052482-19052501 | None:intergenic | 25.0% |
| ! | CATTTATCTATTAGAAAGGA+GGG | - | chr5_2:19052483-19052502 | None:intergenic | 25.0% |
| ! | ACATTTATCTATTAGAAAGG+AGG | - | chr5_2:19052484-19052503 | None:intergenic | 25.0% |
| ! | GACACATTTATCTATTAGAA+AGG | - | chr5_2:19052487-19052506 | None:intergenic | 25.0% |
| ! | ATCCCTTGTTAATAATTGTT+AGG | + | chr5_2:19052605-19052624 | Msa0761570:intron | 25.0% |
| ! | GACCTAACAATTATTAACAA+GGG | - | chr5_2:19052610-19052629 | None:intergenic | 25.0% |
| ! | AGACCTAACAATTATTAACA+AGG | - | chr5_2:19052611-19052630 | None:intergenic | 25.0% |
| !! | TATTTTCTAACCGTGATTTA+GGG | + | chr5_2:19052665-19052684 | Msa0761570:intron | 25.0% |
| ! | GTCAAAAAGTTGTAATAAAG+TGG | - | chr5_2:19052731-19052750 | None:intergenic | 25.0% |
| ! | ACATTACTCTGTACTTTATT+AGG | + | chr5_2:19052856-19052875 | Msa0761570:intron | 25.0% |
| ! | TCAAACTAAATCATTTGAGA+CGG | + | chr5_2:19053137-19053156 | Msa0761570:intron | 25.0% |
| !!! | GAATGGAAATGAATTTGTTT+TGG | - | chr5_2:19053199-19053218 | None:intergenic | 25.0% |
| ! | TTCATTTCCATTCTAACAAT+CGG | + | chr5_2:19053206-19053225 | Msa0761570:intron | 25.0% |
| ! | TATAGCCCTCTTATATATTA+TGG | + | chr5_2:19053544-19053563 | Msa0761570:CDS | 25.0% |
| ! | TGAGTCCATAATATATAAGA+GGG | - | chr5_2:19053552-19053571 | None:intergenic | 25.0% |
| ! | TTGAGTCCATAATATATAAG+AGG | - | chr5_2:19053553-19053572 | None:intergenic | 25.0% |
| ! | TAAATCACATATATATGTCC+AGG | + | chr5_2:19053758-19053777 | Msa0761570:intron | 25.0% |
| ! | TGTCTATGTTAGTATTTCAT+AGG | + | chr5_2:19053862-19053881 | Msa0761570:intron | 25.0% |
| ! | ATAGGTATAACTTCAATATC+AGG | - | chr5_2:19054319-19054338 | None:intergenic | 25.0% |
| ! | TGATATTGAAGTTATACCTA+TGG | + | chr5_2:19054318-19054337 | Msa0761570:CDS | 25.0% |
| !! | GATATTTAACATCTGATTTG+AGG | - | chr5_2:19054372-19054391 | None:intergenic | 25.0% |
| ! | ATTGCAAATGTTTATTTGGA+AGG | - | chr5_2:19054476-19054495 | None:intergenic | 25.0% |
| !!! | ATCAGAAATCCATTGATTTT+TGG | + | chr5_2:19054611-19054630 | Msa0761570:three_prime_UTR | 25.0% |
| AGATATGCAAACATTAGAGA+TGG | + | chr5_2:19051207-19051226 | Msa0761570:intron | 30.0% | |
| ! | TTTGTTTGCTACTGTTGTAT+TGG | - | chr5_2:19051280-19051299 | None:intergenic | 30.0% |
| TGCTGAAATTAAATGCAACT+TGG | - | chr5_2:19051337-19051356 | None:intergenic | 30.0% | |
| !!! | ATTTTTAGCTATCACTTTCC+TGG | - | chr5_2:19051451-19051470 | None:intergenic | 30.0% |
| !!! | TTCCTCAAAATGTTTTGGTT+AGG | - | chr5_2:19051501-19051520 | None:intergenic | 30.0% |
| ! | CTGTTAAGGCTAACAATTTT+TGG | + | chr5_2:19051687-19051706 | Msa0761570:intron | 30.0% |
| TTTACTTCTTATAGGGAAAC+AGG | + | chr5_2:19051946-19051965 | Msa0761570:intron | 30.0% | |
| AACTTTACCCTAGAACTAAT+GGG | - | chr5_2:19052062-19052081 | None:intergenic | 30.0% | |
| AAACTTTACCCTAGAACTAA+TGG | - | chr5_2:19052063-19052082 | None:intergenic | 30.0% | |
| ! | CAAATAAGGTACCAAAATAG+GGG | - | chr5_2:19052393-19052412 | None:intergenic | 30.0% |
| ! | CTCAAATAAGGTACCAAAAT+AGG | - | chr5_2:19052395-19052414 | None:intergenic | 30.0% |
| ! | CTATTTTCTAACCGTGATTT+AGG | + | chr5_2:19052664-19052683 | Msa0761570:intron | 30.0% |
| TATCATTAGTCCCTAAATCA+CGG | - | chr5_2:19052678-19052697 | None:intergenic | 30.0% | |
| ! | TCTTATACCGATTGTTAGAA+TGG | - | chr5_2:19053216-19053235 | None:intergenic | 30.0% |
| ACAATCGGTATAAGAATTAC+AGG | + | chr5_2:19053221-19053240 | Msa0761570:intron | 30.0% | |
| !! | TTTCAAAGTTGATGACAAAG+TGG | + | chr5_2:19053291-19053310 | Msa0761570:CDS | 30.0% |
| !! | TTCAAAGTTGATGACAAAGT+GGG | + | chr5_2:19053292-19053311 | Msa0761570:CDS | 30.0% |
| ! | TATGGTGCTAAATATAGTGA+TGG | + | chr5_2:19053400-19053419 | Msa0761570:CDS | 30.0% |
| ! | GTAAAATTTGCCAAAGCTTT+TGG | + | chr5_2:19053628-19053647 | Msa0761570:CDS | 30.0% |
| TACATCACCAAACAAAAAGA+AGG | + | chr5_2:19053672-19053691 | Msa0761570:CDS | 30.0% | |
| ! | ATTGCTTCCTTCTTTTTGTT+TGG | - | chr5_2:19053682-19053701 | None:intergenic | 30.0% |
| TTAGAAATGAATCAGCTTTG+AGG | - | chr5_2:19053711-19053730 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTCAACTCGGTATC+TGG | + | chr5_2:19053793-19053812 | Msa0761570:intron | 30.0% |
| TAAATCAATTAGGGGTAAGA+GGG | - | chr5_2:19053975-19053994 | None:intergenic | 30.0% | |
| ATGTATTGTAGGGAGAAAAA+TGG | + | chr5_2:19054219-19054238 | Msa0761570:intron | 30.0% | |
| !! | TATCGATTTGTGATTGACAT+TGG | + | chr5_2:19054388-19054407 | Msa0761570:CDS | 30.0% |
| ! | ACCTTCTGGAGAAATTGAAA+GGG | - | chr5_2:19051101-19051120 | None:intergenic | 35.0% |
| ! | AACCTTCTGGAGAAATTGAA+AGG | - | chr5_2:19051102-19051121 | None:intergenic | 35.0% |
| AAGATGTAAAGTGAACCTTC+TGG | - | chr5_2:19051115-19051134 | None:intergenic | 35.0% | |
| GGAAAATACATACTATCTGC+AGG | + | chr5_2:19051228-19051247 | Msa0761570:intron | 35.0% | |
| ! | GACCTAACCAAAACATTTTG+AGG | + | chr5_2:19051496-19051515 | Msa0761570:intron | 35.0% |
| GATAAAAGAGTCATATGTGG+AGG | - | chr5_2:19051808-19051827 | None:intergenic | 35.0% | |
| GTGGATAAAAGAGTCATATG+TGG | - | chr5_2:19051811-19051830 | None:intergenic | 35.0% | |
| TGTTGCATCAAGTTTGTATG+TGG | - | chr5_2:19052438-19052457 | None:intergenic | 35.0% | |
| CGGTTAGAAAATAGACGATT+AGG | - | chr5_2:19052658-19052677 | None:intergenic | 35.0% | |
| ! | TTTTCTCTCATACTCACAAG+AGG | + | chr5_2:19052755-19052774 | Msa0761570:intron | 35.0% |
| TACTCACAAGAGGAGAAAAT+TGG | + | chr5_2:19052765-19052784 | Msa0761570:intron | 35.0% | |
| AATTACAGGCACGAAATTGT+TGG | + | chr5_2:19053235-19053254 | Msa0761570:intron | 35.0% | |
| !! | AGTGATGGAAGTATCACATA+TGG | + | chr5_2:19053415-19053434 | Msa0761570:CDS | 35.0% |
| ! | TGGCAAATTTTACAGCCATA+TGG | - | chr5_2:19053621-19053640 | None:intergenic | 35.0% |
| CACATTAACTCCAAAAGCTT+TGG | - | chr5_2:19053641-19053660 | None:intergenic | 35.0% | |
| TGATTTACCTGCATTTGATC+TGG | - | chr5_2:19053745-19053764 | None:intergenic | 35.0% | |
| ! | GATAATTTTCTAGGCTGCAA+CGG | + | chr5_2:19053907-19053926 | Msa0761570:intron | 35.0% |
| ! | ATAATTTTCTAGGCTGCAAC+GGG | + | chr5_2:19053908-19053927 | Msa0761570:intron | 35.0% |
| GTAAATCAATTAGGGGTAAG+AGG | - | chr5_2:19053976-19053995 | None:intergenic | 35.0% | |
| ATCTCATGGAAAGCTTGTAT+TGG | + | chr5_2:19054000-19054019 | Msa0761570:CDS | 35.0% | |
| ATATGCTTACCCACTAGTAA+AGG | - | chr5_2:19054064-19054083 | None:intergenic | 35.0% | |
| ! | GCTGTATTGACATAATCCAT+AGG | - | chr5_2:19054337-19054356 | None:intergenic | 35.0% |
| GGATTATGTCAATACAGCAA+TGG | + | chr5_2:19054339-19054358 | Msa0761570:CDS | 35.0% | |
| TTCTTTGGATGCTCGTATTC+AGG | - | chr5_2:19051036-19051055 | None:intergenic | 40.0% | |
| TGAATACGAGCATCCAAAGA+AGG | + | chr5_2:19051035-19051054 | Msa0761570:CDS | 40.0% | |
| ! | CCTTCTGGAGAAATTGAAAG+GGG | - | chr5_2:19051100-19051119 | None:intergenic | 40.0% |
| ! | CTGTTGTATTGGTGTTTGCA+TGG | - | chr5_2:19051269-19051288 | None:intergenic | 40.0% |
| !! | GCATTCAAAGTGTTGTACTG+CGG | + | chr5_2:19051982-19052001 | Msa0761570:CDS | 40.0% |
| !! | CATTCAAAGTGTTGTACTGC+GGG | + | chr5_2:19051983-19052002 | Msa0761570:CDS | 40.0% |
| ! | TTACCCTAGAACTAATGGGT+AGG | - | chr5_2:19052058-19052077 | None:intergenic | 40.0% |
| !! | CAAGTTTTGGTCCCCTATTT+TGG | + | chr5_2:19052379-19052398 | Msa0761570:intron | 40.0% |
| AATTGTTGGTGTAGTGACTG+AGG | + | chr5_2:19053249-19053268 | Msa0761570:CDS | 40.0% | |
| CAAGACTGTCATCACAATCT+TGG | - | chr5_2:19053351-19053370 | None:intergenic | 40.0% | |
| !! | GATGGAAGTATCACATATGG+AGG | + | chr5_2:19053418-19053437 | Msa0761570:CDS | 40.0% |
| ! | GTGGTAAGGCATTAGGTATA+TGG | - | chr5_2:19053483-19053502 | None:intergenic | 40.0% |
| AGGGCTATAAACAGTGATTC+CGG | - | chr5_2:19053533-19053552 | None:intergenic | 40.0% | |
| TATTATGGACTCAACAAGCC+TGG | + | chr5_2:19053559-19053578 | Msa0761570:CDS | 40.0% | |
| TCGGTATCTGGTCACTAATT+TGG | + | chr5_2:19053805-19053824 | Msa0761570:intron | 40.0% | |
| CGGTATCTGGTCACTAATTT+GGG | + | chr5_2:19053806-19053825 | Msa0761570:intron | 40.0% | |
| GGTATCTGGTCACTAATTTG+GGG | + | chr5_2:19053807-19053826 | Msa0761570:intron | 40.0% | |
| GTATCTGGTCACTAATTTGG+GGG | + | chr5_2:19053808-19053827 | Msa0761570:intron | 40.0% | |
| TAGACATGAACGTTCGTTAG+TGG | - | chr5_2:19053848-19053867 | None:intergenic | 40.0% | |
| ! | TAATTTTCTAGGCTGCAACG+GGG | + | chr5_2:19053909-19053928 | Msa0761570:intron | 40.0% |
| ! | CATGGAAAGCTTGTATTGGT+TGG | + | chr5_2:19054004-19054023 | Msa0761570:CDS | 40.0% |
| AGAAAAATGGTAGCTGGTAG+TGG | + | chr5_2:19054232-19054251 | Msa0761570:CDS | 40.0% | |
| ATCCAAAGAAGGCCTTTGGT+TGG | + | chr5_2:19051046-19051065 | Msa0761570:CDS | 45.0% | |
| TCCAAAGAAGGCCTTTGGTT+GGG | + | chr5_2:19051047-19051066 | Msa0761570:CDS | 45.0% | |
| CCCCTTTCAATTTCTCCAGA+AGG | + | chr5_2:19051097-19051116 | Msa0761570:CDS | 45.0% | |
| ! | AACATCGACTGGTCGAAGTT+GGG | - | chr5_2:19051763-19051782 | None:intergenic | 45.0% |
| ACTATCTAGCCAACATCGAC+TGG | - | chr5_2:19051774-19051793 | None:intergenic | 45.0% | |
| ATGATTATAAGGGCGACCCA+AGG | - | chr5_2:19051879-19051898 | None:intergenic | 45.0% | |
| ! | TCCACCTACCCATTAGTTCT+AGG | + | chr5_2:19052051-19052070 | Msa0761570:CDS | 45.0% |
| !! | CCACCTACCCATTAGTTCTA+GGG | + | chr5_2:19052052-19052071 | Msa0761570:CDS | 45.0% |
| !! | AGTTGATGACAAAGTGGGTG+TGG | + | chr5_2:19053297-19053316 | Msa0761570:CDS | 45.0% |
| !! | GTTGATGACAAAGTGGGTGT+GGG | + | chr5_2:19053298-19053317 | Msa0761570:CDS | 45.0% |
| ! | GCATCAAGTGGTAAGGCATT+AGG | - | chr5_2:19053490-19053509 | None:intergenic | 45.0% |
| ! | AACAAGCCTGGTCTTCATGT+GGG | + | chr5_2:19053571-19053590 | Msa0761570:CDS | 45.0% |
| CCTGCATTTGATCTGGATCA+CGG | - | chr5_2:19053738-19053757 | None:intergenic | 45.0% | |
| ! | TCGTTAGTGGACAGTGGAAT+TGG | - | chr5_2:19053835-19053854 | None:intergenic | 45.0% |
| TAACTCAAGAGGCTTCTCTG+GGG | - | chr5_2:19054032-19054051 | None:intergenic | 45.0% | |
| GTAACTCAAGAGGCTTCTCT+GGG | - | chr5_2:19054033-19054052 | None:intergenic | 45.0% | |
| AGAGAAGCCTCTTGAGTTAC+CGG | + | chr5_2:19054033-19054052 | Msa0761570:CDS | 45.0% | |
| GTAGGGAGAAAAATGGTAGC+TGG | + | chr5_2:19054226-19054245 | Msa0761570:intron | 45.0% | |
| !! | AATGGTAGCTGGTAGTGGAA+TGG | + | chr5_2:19054237-19054256 | Msa0761570:CDS | 45.0% |
| !! | ATGGTAGCTGGTAGTGGAAT+GGG | + | chr5_2:19054238-19054257 | Msa0761570:CDS | 45.0% |
| !! | TAATAATTAAAATATGTTAT+AGG | + | chr5_2:19053100-19053119 | Msa0761570:intron | 5.0% |
| GAGCATCCAAAGAAGGCCTT+TGG | + | chr5_2:19051042-19051061 | Msa0761570:CDS | 50.0% | |
| ATCTCTAGCTGCCCAACCAA+AGG | - | chr5_2:19051061-19051080 | None:intergenic | 50.0% | |
| AAAGGGGAGAGAACACCAGA+AGG | - | chr5_2:19051084-19051103 | None:intergenic | 50.0% | |
| ! | CAACATCGACTGGTCGAAGT+TGG | - | chr5_2:19051764-19051783 | None:intergenic | 50.0% |
| CAACTTCGACCAGTCGATGT+TGG | + | chr5_2:19051762-19051781 | Msa0761570:intron | 50.0% | |
| ! | CCCTAGAACTAATGGGTAGG+TGG | - | chr5_2:19052055-19052074 | None:intergenic | 50.0% |
| TGTTGGTGTAGTGACTGAGG+TGG | + | chr5_2:19053252-19053271 | Msa0761570:CDS | 50.0% | |
| GTTGGTGTAGTGACTGAGGT+GGG | + | chr5_2:19053253-19053272 | Msa0761570:CDS | 50.0% | |
| AGCAACGGCATCAAGTGGTA+AGG | - | chr5_2:19053497-19053516 | None:intergenic | 50.0% | |
| AAACAGTGATTCCGGCGCAA+AGG | - | chr5_2:19053525-19053544 | None:intergenic | 50.0% | |
| ! | CAACAAGCCTGGTCTTCATG+TGG | + | chr5_2:19053570-19053589 | Msa0761570:CDS | 50.0% |
| CCGTGATCCAGATCAAATGC+AGG | + | chr5_2:19053735-19053754 | Msa0761570:CDS | 50.0% | |
| ! | GAACGTTCGTTAGTGGACAG+TGG | - | chr5_2:19053841-19053860 | None:intergenic | 50.0% |
| GGTAACTCAAGAGGCTTCTC+TGG | - | chr5_2:19054034-19054053 | None:intergenic | 50.0% | |
| !! | TAGCTGGTAGTGGAATGGGA+GGG | + | chr5_2:19054242-19054261 | Msa0761570:CDS | 50.0% |
| TAGTGGAATGGGAGGGATGA+AGG | + | chr5_2:19054249-19054268 | Msa0761570:CDS | 50.0% | |
| GCCCAACCAAAGGCCTTCTT+TGG | - | chr5_2:19051051-19051070 | None:intergenic | 55.0% | |
| TGGGCAGCTAGAGATCCTTC+TGG | + | chr5_2:19051066-19051085 | Msa0761570:CDS | 55.0% | |
| ! | CGACTGGTCGAAGTTGGGTT+TGG | - | chr5_2:19051758-19051777 | None:intergenic | 55.0% |
| GTACTGCGGGATATGCCACA+CGG | + | chr5_2:19051996-19052015 | Msa0761570:CDS | 55.0% | |
| GACCTCCACATGGCCAAGAA+CGG | + | chr5_2:19052018-19052037 | Msa0761570:CDS | 55.0% | |
| ATCCGTTCTTGGCCATGTGG+AGG | - | chr5_2:19052023-19052042 | None:intergenic | 55.0% | |
| TCCACATGGCCAAGAACGGA+TGG | + | chr5_2:19052022-19052041 | Msa0761570:CDS | 55.0% | |
| CCACATGGCCAAGAACGGAT+GGG | + | chr5_2:19052023-19052042 | Msa0761570:CDS | 55.0% | |
| CACATGGCCAAGAACGGATG+GGG | + | chr5_2:19052024-19052043 | Msa0761570:CDS | 55.0% | |
| GTGGGTGTGGGATGCTTAGT+TGG | + | chr5_2:19053310-19053329 | Msa0761570:CDS | 55.0% | |
| ! | TGGAGGCTACTCTGACTCGA+TGG | + | chr5_2:19053435-19053454 | Msa0761570:CDS | 55.0% |
| AGAGGAGCAACGGCATCAAG+TGG | - | chr5_2:19053502-19053521 | None:intergenic | 55.0% | |
| AGCCTCTTGAGTTACCGGCA+TGG | + | chr5_2:19054038-19054057 | Msa0761570:CDS | 55.0% | |
| ACCGGCATGGCCTTTACTAG+TGG | + | chr5_2:19054051-19054070 | Msa0761570:CDS | 55.0% | |
| CCCACTAGTAAAGGCCATGC+CGG | - | chr5_2:19054055-19054074 | None:intergenic | 55.0% | |
| CCGGCATGGCCTTTACTAGT+GGG | + | chr5_2:19054052-19054071 | Msa0761570:CDS | 55.0% | |
| !! | GTAGCTGGTAGTGGAATGGG+AGG | + | chr5_2:19054241-19054260 | Msa0761570:CDS | 55.0% |
| ATGCCACACGGACCTCCACA+TGG | + | chr5_2:19052008-19052027 | Msa0761570:CDS | 60.0% | |
| CCCATCCGTTCTTGGCCATG+TGG | - | chr5_2:19052026-19052045 | None:intergenic | 60.0% | |
| GGATGTGCCCCATCCGTTCT+TGG | - | chr5_2:19052034-19052053 | None:intergenic | 60.0% | |
| GGCGCAAAGGAGAGGAGCAA+CGG | - | chr5_2:19053512-19053531 | None:intergenic | 60.0% | |
| GTTGCTCCTCTCCTTTGCGC+CGG | + | chr5_2:19053511-19053530 | Msa0761570:CDS | 60.0% | |
| GTGATTCCGGCGCAAAGGAG+AGG | - | chr5_2:19053520-19053539 | None:intergenic | 60.0% | |
| ACCACGCCCACATGAAGACC+AGG | - | chr5_2:19053580-19053599 | None:intergenic | 60.0% | |
| GGTCTTCATGTGGGCGTGGT+TGG | + | chr5_2:19053580-19053599 | Msa0761570:CDS | 60.0% | |
| ! | TCATGTGGGCGTGGTTGGCT+TGG | + | chr5_2:19053585-19053604 | Msa0761570:CDS | 60.0% |
| !! | CATGTGGGCGTGGTTGGCTT+GGG | + | chr5_2:19053586-19053605 | Msa0761570:CDS | 60.0% |
| !! | GTGGTTGGCTTGGGTGGGTT+GGG | + | chr5_2:19053595-19053614 | Msa0761570:CDS | 60.0% |
| !! | CTTGGGTGGGTTGGGCCATA+TGG | + | chr5_2:19053603-19053622 | Msa0761570:CDS | 60.0% |
| CTAGGCTGCAACGGGGACTT+TGG | + | chr5_2:19053916-19053935 | Msa0761570:intron | 60.0% | |
| GCTGCAACGGGGACTTTGGA+TGG | + | chr5_2:19053920-19053939 | Msa0761570:CDS | 60.0% | |
| GGCCATGCCGGTAACTCAAG+AGG | - | chr5_2:19054043-19054062 | None:intergenic | 60.0% | |
| TGGCCATGTGGAGGTCCGTG+TGG | - | chr5_2:19052014-19052033 | None:intergenic | 65.0% | |
| ! | GCCTGGTCTTCATGTGGGCG+TGG | + | chr5_2:19053576-19053595 | Msa0761570:CDS | 65.0% |
| !! | TGGGCGTGGTTGGCTTGGGT+GGG | + | chr5_2:19053590-19053609 | Msa0761570:CDS | 65.0% |
| !! | CGTGGTTGGCTTGGGTGGGT+TGG | + | chr5_2:19053594-19053613 | Msa0761570:CDS | 65.0% |
| !! | GTGGGCGTGGTTGGCTTGGG+TGG | + | chr5_2:19053589-19053608 | Msa0761570:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 19051009 | 19054659 | 19051009 | ID=Msa0761570;Name=Msa0761570 |
| chr5_2 | mRNA | 19051009 | 19054659 | 19051009 | ID=Msa0761570-mRNA-1;Parent=Msa0761570;Name=Msa0761570-mRNA-1;_AED=0.18;_eAED=0.18;_QI=12|1|1|1|0.8|0.66|6|197|361 |
| chr5_2 | exon | 19051009 | 19051118 | 19051009 | ID=Msa0761570-mRNA-1:exon:8157;Parent=Msa0761570-mRNA-1 |
| chr5_2 | exon | 19051960 | 19052073 | 19051960 | ID=Msa0761570-mRNA-1:exon:8158;Parent=Msa0761570-mRNA-1 |
| chr5_2 | exon | 19053243 | 19053756 | 19053243 | ID=Msa0761570-mRNA-1:exon:8159;Parent=Msa0761570-mRNA-1 |
| chr5_2 | exon | 19053920 | 19054073 | 19053920 | ID=Msa0761570-mRNA-1:exon:8160;Parent=Msa0761570-mRNA-1 |
| chr5_2 | exon | 19054230 | 19054441 | 19054230 | ID=Msa0761570-mRNA-1:exon:8161;Parent=Msa0761570-mRNA-1 |
| chr5_2 | exon | 19054469 | 19054659 | 19054469 | ID=Msa0761570-mRNA-1:exon:8162;Parent=Msa0761570-mRNA-1 |
| chr5_2 | five_prime_UTR | 19051009 | 19051020 | 19051009 | ID=Msa0761570-mRNA-1:five_prime_utr;Parent=Msa0761570-mRNA-1 |
| chr5_2 | CDS | 19051021 | 19051118 | 19051021 | ID=Msa0761570-mRNA-1:cds;Parent=Msa0761570-mRNA-1 |
| chr5_2 | CDS | 19051960 | 19052073 | 19051960 | ID=Msa0761570-mRNA-1:cds;Parent=Msa0761570-mRNA-1 |
| chr5_2 | CDS | 19053243 | 19053756 | 19053243 | ID=Msa0761570-mRNA-1:cds;Parent=Msa0761570-mRNA-1 |
| chr5_2 | CDS | 19053920 | 19054073 | 19053920 | ID=Msa0761570-mRNA-1:cds;Parent=Msa0761570-mRNA-1 |
| chr5_2 | CDS | 19054230 | 19054435 | 19054230 | ID=Msa0761570-mRNA-1:cds;Parent=Msa0761570-mRNA-1 |
| chr5_2 | three_prime_UTR | 19054436 | 19054441 | 19054436 | ID=Msa0761570-mRNA-1:three_prime_utr;Parent=Msa0761570-mRNA-1 |
| chr5_2 | three_prime_UTR | 19054469 | 19054659 | 19054469 | ID=Msa0761570-mRNA-1:three_prime_utr;Parent=Msa0761570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
