Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391600 | XP_003598225.1 | 96.584 | 527 | 18 | 0 | 1 | 527 | 1 | 527 | 0.0 | 1080 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391600 | sp|Q9STY3|PME33_ARATH | 55.792 | 518 | 212 | 8 | 26 | 527 | 78 | 594 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391600 | G7IYH9 | 96.584 | 527 | 18 | 0 | 1 | 527 | 1 | 527 | 0.0 | 1080 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004590 | Msa0391600 | 0.825610 | 4.267023e-54 | -8.615850e-47 |
| Msa0004940 | Msa0391600 | 0.809382 | 1.945272e-50 | -8.615850e-47 |
| Msa0004990 | Msa0391600 | 0.808220 | 3.446739e-50 | -8.615850e-47 |
| Msa0005560 | Msa0391600 | 0.837033 | 6.598062e-57 | -8.615850e-47 |
| Msa0024650 | Msa0391600 | 0.801156 | 1.028203e-48 | -8.615850e-47 |
| Msa0043840 | Msa0391600 | 0.802128 | 6.498936e-49 | -8.615850e-47 |
| Msa0048380 | Msa0391600 | 0.807655 | 4.546810e-50 | -8.615850e-47 |
| Msa0053040 | Msa0391600 | 0.804016 | 2.644784e-49 | -8.615850e-47 |
| Msa0054050 | Msa0391600 | 0.825374 | 4.854123e-54 | -8.615850e-47 |
| Msa0057860 | Msa0391600 | 0.821947 | 3.078752e-53 | -8.615850e-47 |
| Msa0099890 | Msa0391600 | 0.826020 | 3.410381e-54 | -8.615850e-47 |
| Msa0102920 | Msa0391600 | 0.827617 | 1.416847e-54 | -8.615850e-47 |
| Msa0121320 | Msa0391600 | 0.808675 | 2.756172e-50 | -8.615850e-47 |
| Msa0136090 | Msa0391600 | 0.825655 | 4.164770e-54 | -8.615850e-47 |
| Msa0147680 | Msa0391600 | 0.850626 | 1.503336e-60 | -8.615850e-47 |
| Msa0163690 | Msa0391600 | 0.814476 | 1.510895e-51 | -8.615850e-47 |
| Msa0166180 | Msa0391600 | 0.802400 | 5.711902e-49 | -8.615850e-47 |
| Msa0192830 | Msa0391600 | 0.826398 | 2.773086e-54 | -8.615850e-47 |
| Msa0206370 | Msa0391600 | 0.805352 | 1.391691e-49 | -8.615850e-47 |
| Msa0210790 | Msa0391600 | 0.814759 | 1.307891e-51 | -8.615850e-47 |
| Msa0210850 | Msa0391600 | 0.816575 | 5.152032e-52 | -8.615850e-47 |
| Msa0235080 | Msa0391600 | 0.816249 | 6.096827e-52 | -8.615850e-47 |
| Msa0366510 | Msa0391600 | 0.802069 | 6.681237e-49 | -8.615850e-47 |
| Msa0367350 | Msa0391600 | 0.803325 | 3.679765e-49 | -8.615850e-47 |
| Msa0386910 | Msa0391600 | 0.820416 | 6.939004e-53 | -8.615850e-47 |
| Msa0391600 | Msa0393820 | 0.964051 | 7.654067e-123 | -8.615850e-47 |
| Msa0391600 | Msa0415010 | 0.821355 | 4.218840e-53 | -8.615850e-47 |
| Msa0391600 | Msa0459930 | 0.812512 | 4.085362e-51 | -8.615850e-47 |
| Msa0391600 | Msa0523720 | 0.819345 | 1.219330e-52 | -8.615850e-47 |
| Msa0391600 | Msa0524710 | 0.800243 | 1.579414e-48 | -8.615850e-47 |
| Msa0391600 | Msa0526880 | 0.806239 | 9.057857e-50 | -8.615850e-47 |
| Msa0391600 | Msa0530660 | 0.821973 | 3.036712e-53 | -8.615850e-47 |
| Msa0391600 | Msa0547330 | 0.800132 | 1.663731e-48 | -8.615850e-47 |
| Msa0391600 | Msa0549920 | 0.803739 | 3.019836e-49 | -8.615850e-47 |
| Msa0391600 | Msa0561830 | 0.824296 | 8.716997e-54 | -8.615850e-47 |
| Msa0391600 | Msa0584970 | 0.803703 | 3.071261e-49 | -8.615850e-47 |
| Msa0391600 | Msa0587180 | 0.825282 | 5.104525e-54 | -8.615850e-47 |
| Msa0391600 | Msa0597800 | 0.808397 | 3.160229e-50 | -8.615850e-47 |
| Msa0391600 | Msa0597820 | 0.816817 | 4.548211e-52 | -8.615850e-47 |
| Msa0391600 | Msa0602050 | 0.841729 | 3.981379e-58 | -8.615850e-47 |
| Msa0391600 | Msa0605470 | 0.808049 | 3.748548e-50 | -8.615850e-47 |
| Msa0391600 | Msa0622890 | 0.801721 | 7.877722e-49 | -8.615850e-47 |
| Msa0391600 | Msa0623980 | 0.823079 | 1.680422e-53 | -8.615850e-47 |
| Msa0391600 | Msa0626980 | 0.824690 | 7.040403e-54 | -8.615850e-47 |
| Msa0391600 | Msa0627360 | 0.829122 | 6.141572e-55 | -8.615850e-47 |
| Msa0391600 | Msa0637700 | 0.802165 | 6.384321e-49 | -8.615850e-47 |
| Msa0391600 | Msa0643190 | 0.824426 | 8.123590e-54 | -8.615850e-47 |
| Msa0391600 | Msa0646230 | 0.817470 | 3.243940e-52 | -8.615850e-47 |
| Msa0391600 | Msa0655370 | 0.832168 | 1.102368e-55 | -8.615850e-47 |
| Msa0391600 | Msa0673940 | 0.832787 | 7.742936e-56 | -8.615850e-47 |
| Msa0391600 | Msa0676200 | 0.826332 | 2.875280e-54 | -8.615850e-47 |
| Msa0391600 | Msa0716980 | 0.802740 | 4.860193e-49 | -8.615850e-47 |
| Msa0391600 | Msa0717030 | 0.813938 | 1.986495e-51 | -8.615850e-47 |
| Msa0391600 | Msa0747710 | 0.806193 | 9.265180e-50 | -8.615850e-47 |
| Msa0391600 | Msa0750790 | 0.818346 | 2.056109e-52 | -8.615850e-47 |
| Msa0391600 | Msa0761570 | 0.806684 | 7.300449e-50 | -8.615850e-47 |
| Msa0391600 | Msa0761830 | 0.807419 | 5.101928e-50 | -8.615850e-47 |
| Msa0391600 | Msa0774660 | 0.801003 | 1.105110e-48 | -8.615850e-47 |
| Msa0391600 | Msa0777250 | 0.803352 | 3.631434e-49 | -8.615850e-47 |
| Msa0391600 | Msa0799110 | 0.819482 | 1.135057e-52 | -8.615850e-47 |
| Msa0391600 | Msa0799120 | 0.809439 | 1.891668e-50 | -8.615850e-47 |
| Msa0391600 | Msa0803560 | 0.803359 | 3.620264e-49 | -8.615850e-47 |
| Msa0391600 | Msa0814160 | 0.800653 | 1.303124e-48 | -8.615850e-47 |
| Msa0391600 | Msa0817690 | 0.810583 | 1.072353e-50 | -8.615850e-47 |
| Msa0391600 | Msa0828350 | 0.802449 | 5.580306e-49 | -8.615850e-47 |
| Msa0391600 | Msa0847140 | 0.802155 | 6.416586e-49 | -8.615850e-47 |
| Msa0391600 | Msa0854840 | 0.801509 | 8.706038e-49 | -8.615850e-47 |
| Msa0391600 | Msa0910830 | 0.809143 | 2.189292e-50 | -8.615850e-47 |
| Msa0391600 | Msa0931370 | 0.800475 | 1.416214e-48 | -8.615850e-47 |
| Msa0391600 | Msa0936630 | 0.809756 | 1.616994e-50 | -8.615850e-47 |
| Msa0391600 | Msa0973770 | 0.804377 | 2.224852e-49 | -8.615850e-47 |
| Msa0391600 | Msa1029860 | 0.800765 | 1.236247e-48 | -8.615850e-47 |
| Msa0391600 | Msa1040330 | 0.822809 | 1.942241e-53 | -8.615850e-47 |
| Msa0391600 | Msa1076900 | 0.800119 | 1.673557e-48 | -8.615850e-47 |
| Msa0391600 | Msa1085560 | 0.804399 | 2.201202e-49 | -8.615850e-47 |
| Msa0391600 | Msa1103450 | 0.808303 | 3.308914e-50 | -8.615850e-47 |
| Msa0391600 | Msa1120960 | 0.803580 | 3.257567e-49 | -8.615850e-47 |
| Msa0391600 | Msa1121080 | 0.800390 | 1.474260e-48 | -8.615850e-47 |
| Msa0391600 | Msa1147010 | 0.800412 | 1.458568e-48 | -8.615850e-47 |
| Msa0391600 | Msa1156670 | 0.802503 | 5.439530e-49 | -8.615850e-47 |
| Msa0391600 | Msa1163710 | 0.805087 | 1.581347e-49 | -8.615850e-47 |
| Msa0391600 | Msa1181660 | 0.802612 | 5.165260e-49 | -8.615850e-47 |
| Msa0391600 | Msa1191270 | 0.824082 | 9.787828e-54 | -8.615850e-47 |
| Msa0391600 | Msa1211320 | 0.826912 | 2.090953e-54 | -8.615850e-47 |
| Msa0391600 | Msa1217890 | 0.818850 | 1.580657e-52 | -8.615850e-47 |
| Msa0391600 | Msa1220720 | 0.818822 | 1.603504e-52 | -8.615850e-47 |
| Msa0391600 | Msa1223540 | 0.800814 | 1.207711e-48 | -8.615850e-47 |
| Msa0391600 | Msa1223960 | 0.809252 | 2.074177e-50 | -8.615850e-47 |
| Msa0391600 | Msa1223990 | 0.800783 | 1.225769e-48 | -8.615850e-47 |
| Msa0391600 | Msa1259570 | 0.823582 | 1.281553e-53 | -8.615850e-47 |
| Msa0391600 | Msa1263520 | 0.807292 | 5.429098e-50 | -8.615850e-47 |
| Msa0391600 | Msa1265570 | 0.821091 | 4.854368e-53 | -8.615850e-47 |
| Msa0391600 | Msa1265940 | 0.810433 | 1.155695e-50 | -8.615850e-47 |
| Msa0391600 | Msa1323030 | 0.824866 | 6.399333e-54 | -8.615850e-47 |
| Msa0391600 | Msa1328280 | 0.801948 | 7.075686e-49 | -8.615850e-47 |
| Msa0391600 | Msa1334670 | 0.821396 | 4.127611e-53 | -8.615850e-47 |
| Msa0391600 | Msa1349420 | 0.804989 | 1.657499e-49 | -8.615850e-47 |
| Msa0391600 | Msa1364690 | 0.807363 | 5.243454e-50 | -8.615850e-47 |
| Msa0391600 | Msa1365230 | 0.819112 | 1.377896e-52 | -8.615850e-47 |
| Msa0391600 | Msa1368420 | 0.816357 | 5.764341e-52 | -8.615850e-47 |
| Msa0391600 | Msa1377190 | 0.810478 | 1.130101e-50 | -8.615850e-47 |
| Msa0391600 | Msa1377460 | 0.803319 | 3.688969e-49 | -8.615850e-47 |
| Msa0391600 | Msa1383220 | 0.813824 | 2.104999e-51 | -8.615850e-47 |
| Msa0391600 | Msa1413020 | 0.800193 | 1.616884e-48 | -8.615850e-47 |
| Msa0391600 | Msa1417220 | 0.804752 | 1.858103e-49 | -8.615850e-47 |
| Msa0391600 | Msa1431020 | 0.812260 | 4.637504e-51 | -8.615850e-47 |
| Msa0391600 | Msa1434700 | 0.807081 | 6.015719e-50 | -8.615850e-47 |
| Msa0391600 | Msa1453890 | 0.804867 | 1.757853e-49 | -8.615850e-47 |
| Msa0244310 | Msa0391600 | 0.824327 | 8.572999e-54 | -8.615850e-47 |
| Msa0260980 | Msa0391600 | 0.803473 | 3.427599e-49 | -8.615850e-47 |
| Msa0273360 | Msa0391600 | 0.807302 | 5.402678e-50 | -8.615850e-47 |
| Msa0282830 | Msa0391600 | 0.810318 | 1.223569e-50 | -8.615850e-47 |
| Msa0313620 | Msa0391600 | 0.800207 | 1.605714e-48 | -8.615850e-47 |
| Msa0321240 | Msa0391600 | 0.824110 | 9.640623e-54 | -8.615850e-47 |
| Msa0336430 | Msa0391600 | 0.811086 | 8.348516e-51 | -8.615850e-47 |
| Msa0336460 | Msa0391600 | 0.802453 | 5.571015e-49 | -8.615850e-47 |
| Msa0336520 | Msa0391600 | 0.818231 | 2.183342e-52 | -8.615850e-47 |
| Msa0336640 | Msa0391600 | 0.803554 | 3.298418e-49 | -8.615850e-47 |
| Msa0357470 | Msa0391600 | 0.831883 | 1.296355e-55 | -8.615850e-47 |
| Msa0357510 | Msa0391600 | 0.826086 | 3.290406e-54 | -8.615850e-47 |
| Msa0357530 | Msa0391600 | 0.823317 | 1.478024e-53 | -8.615850e-47 |
| Msa0357550 | Msa0391600 | 0.830596 | 2.685981e-55 | -8.615850e-47 |
| Msa0357560 | Msa0391600 | 0.817143 | 3.842008e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391600 | MtrunA17_Chr3g0079341 | 96.584 | 527 | 18 | 0 | 1 | 527 | 1 | 527 | 0.0 | 1080 |
| Msa0391600 | MtrunA17_Chr3g0079361 | 96.584 | 527 | 18 | 0 | 1 | 527 | 1 | 527 | 0.0 | 1078 |
| Msa0391600 | MtrunA17_Chr3g0090091 | 94.140 | 529 | 28 | 2 | 1 | 527 | 1 | 528 | 0.0 | 1052 |
| Msa0391600 | MtrunA17_Chr3g0079351 | 95.636 | 527 | 23 | 0 | 1 | 527 | 1 | 527 | 0.0 | 1046 |
| Msa0391600 | MtrunA17_Chr4g0018371 | 66.403 | 506 | 158 | 5 | 32 | 527 | 36 | 539 | 0.0 | 705 |
| Msa0391600 | MtrunA17_Chr7g0234731 | 94.276 | 297 | 17 | 0 | 1 | 297 | 20 | 316 | 0.0 | 568 |
| Msa0391600 | MtrunA17_Chr4g0011771 | 52.662 | 526 | 223 | 12 | 7 | 527 | 9 | 513 | 0.0 | 518 |
| Msa0391600 | MtrunA17_Chr7g0234711 | 97.414 | 232 | 6 | 0 | 296 | 527 | 38 | 269 | 4.45e-173 | 489 |
| Msa0391600 | MtrunA17_Chr4g0011791 | 48.120 | 532 | 241 | 14 | 3 | 527 | 6 | 509 | 4.59e-165 | 478 |
| Msa0391600 | MtrunA17_Chr8g0391291 | 46.693 | 514 | 244 | 8 | 36 | 527 | 34 | 539 | 5.21e-160 | 466 |
| Msa0391600 | MtrunA17_Chr8g0391311 | 46.498 | 514 | 245 | 8 | 36 | 527 | 36 | 541 | 1.11e-159 | 465 |
| Msa0391600 | MtrunA17_Chr7g0269541 | 49.095 | 442 | 200 | 9 | 102 | 523 | 116 | 552 | 2.76e-142 | 421 |
| Msa0391600 | MtrunA17_Chr7g0233831 | 45.401 | 511 | 251 | 13 | 35 | 527 | 55 | 555 | 1.46e-140 | 417 |
| Msa0391600 | MtrunA17_Chr7g0233771 | 44.874 | 517 | 250 | 13 | 37 | 527 | 47 | 554 | 3.68e-138 | 410 |
| Msa0391600 | MtrunA17_Chr7g0233801 | 51.338 | 411 | 181 | 10 | 129 | 527 | 150 | 553 | 2.11e-136 | 406 |
| Msa0391600 | MtrunA17_Chr4g0069841 | 49.545 | 440 | 196 | 10 | 102 | 527 | 89 | 516 | 9.30e-134 | 398 |
| Msa0391600 | MtrunA17_Chr2g0302021 | 48.301 | 412 | 206 | 6 | 119 | 527 | 118 | 525 | 4.39e-131 | 391 |
| Msa0391600 | MtrunA17_Chr3g0126771 | 41.822 | 538 | 268 | 14 | 24 | 527 | 71 | 597 | 1.08e-130 | 393 |
| Msa0391600 | MtrunA17_Chr8g0345281 | 42.614 | 528 | 257 | 12 | 36 | 527 | 72 | 589 | 2.62e-130 | 392 |
| Msa0391600 | MtrunA17_Chr4g0011751 | 46.528 | 432 | 215 | 6 | 102 | 527 | 68 | 489 | 3.26e-130 | 388 |
| Msa0391600 | MtrunA17_Chr4g0069861 | 45.249 | 442 | 228 | 6 | 96 | 527 | 80 | 517 | 2.32e-128 | 384 |
| Msa0391600 | MtrunA17_Chr1g0147051 | 43.777 | 466 | 224 | 11 | 97 | 527 | 145 | 607 | 1.26e-123 | 375 |
| Msa0391600 | MtrunA17_Chr4g0069881 | 39.020 | 510 | 287 | 11 | 30 | 527 | 38 | 535 | 5.79e-123 | 371 |
| Msa0391600 | MtrunA17_Chr1g0192331 | 41.527 | 537 | 280 | 13 | 7 | 527 | 10 | 528 | 1.84e-122 | 369 |
| Msa0391600 | MtrunA17_Chr7g0272141 | 47.188 | 409 | 190 | 7 | 134 | 527 | 145 | 542 | 1.72e-121 | 367 |
| Msa0391600 | MtrunA17_Chr1g0175661 | 40.248 | 564 | 277 | 16 | 8 | 527 | 11 | 558 | 2.63e-121 | 367 |
| Msa0391600 | MtrunA17_Chr7g0269531 | 42.827 | 467 | 222 | 9 | 102 | 527 | 103 | 565 | 3.59e-120 | 365 |
| Msa0391600 | MtrunA17_Chr3g0080391 | 43.271 | 483 | 244 | 11 | 66 | 527 | 101 | 574 | 4.94e-119 | 362 |
| Msa0391600 | MtrunA17_Chr8g0354901 | 41.109 | 523 | 270 | 12 | 29 | 527 | 73 | 581 | 8.55e-119 | 362 |
| Msa0391600 | MtrunA17_Chr1g0195301 | 40.602 | 532 | 268 | 13 | 36 | 527 | 32 | 555 | 1.70e-118 | 360 |
| Msa0391600 | MtrunA17_Chr1g0195321 | 40.602 | 532 | 268 | 13 | 36 | 527 | 32 | 555 | 1.70e-118 | 360 |
| Msa0391600 | MtrunA17_Chr1g0195331 | 40.602 | 532 | 268 | 13 | 36 | 527 | 32 | 555 | 6.40e-118 | 358 |
| Msa0391600 | MtrunA17_Chr8g0354911 | 51.051 | 333 | 156 | 4 | 200 | 527 | 282 | 612 | 1.37e-115 | 354 |
| Msa0391600 | MtrunA17_Chr7g0269521 | 40.672 | 536 | 261 | 15 | 36 | 527 | 40 | 562 | 2.67e-114 | 350 |
| Msa0391600 | MtrunA17_Chr7g0269511 | 39.925 | 536 | 265 | 12 | 36 | 527 | 42 | 564 | 4.12e-114 | 349 |
| Msa0391600 | MtrunA17_Chr1g0195351 | 40.038 | 532 | 269 | 14 | 36 | 527 | 32 | 553 | 2.44e-112 | 344 |
| Msa0391600 | MtrunA17_Chr3g0080381 | 52.698 | 315 | 145 | 3 | 215 | 527 | 316 | 628 | 2.13e-111 | 344 |
| Msa0391600 | MtrunA17_Chr8g0345211 | 39.423 | 520 | 269 | 12 | 36 | 527 | 81 | 582 | 4.78e-110 | 339 |
| Msa0391600 | MtrunA17_Chr1g0195311 | 56.835 | 278 | 114 | 4 | 253 | 527 | 40 | 314 | 3.30e-108 | 325 |
| Msa0391600 | MtrunA17_Chr4g0069891 | 39.957 | 463 | 243 | 8 | 92 | 527 | 139 | 593 | 2.67e-104 | 325 |
| Msa0391600 | MtrunA17_Chr4g0000121 | 36.078 | 510 | 299 | 9 | 36 | 523 | 49 | 553 | 3.70e-101 | 316 |
| Msa0391600 | MtrunA17_Chr1g0192311 | 39.278 | 443 | 243 | 8 | 103 | 523 | 128 | 566 | 4.08e-101 | 316 |
| Msa0391600 | MtrunA17_Chr1g0192281 | 39.278 | 443 | 243 | 8 | 103 | 523 | 128 | 566 | 4.08e-101 | 316 |
| Msa0391600 | MtrunA17_Chr1g0192321 | 34.953 | 535 | 294 | 14 | 35 | 526 | 59 | 582 | 9.38e-100 | 313 |
| Msa0391600 | MtrunA17_Chr1g0192301 | 37.267 | 483 | 270 | 10 | 68 | 523 | 95 | 571 | 2.20e-99 | 311 |
| Msa0391600 | MtrunA17_Chr1g0194091 | 43.909 | 353 | 189 | 5 | 182 | 527 | 219 | 569 | 2.61e-95 | 301 |
| Msa0391600 | MtrunA17_Chr4g0067611 | 34.087 | 531 | 304 | 12 | 28 | 526 | 55 | 571 | 1.12e-94 | 299 |
| Msa0391600 | MtrunA17_Chr3g0129921 | 35.455 | 550 | 296 | 15 | 7 | 516 | 23 | 553 | 3.62e-94 | 297 |
| Msa0391600 | MtrunA17_Chr2g0302001 | 51.765 | 255 | 121 | 2 | 273 | 527 | 185 | 437 | 9.50e-93 | 290 |
| Msa0391600 | MtrunA17_Chr4g0067601 | 34.034 | 523 | 299 | 12 | 36 | 526 | 63 | 571 | 2.50e-92 | 293 |
| Msa0391600 | MtrunA17_Chr1g0194081 | 38.972 | 467 | 254 | 11 | 88 | 527 | 101 | 563 | 5.43e-92 | 292 |
| Msa0391600 | MtrunA17_Chr7g0272151 | 33.276 | 580 | 323 | 16 | 1 | 526 | 13 | 582 | 2.22e-91 | 291 |
| Msa0391600 | MtrunA17_Chr8g0384121 | 35.619 | 525 | 285 | 15 | 28 | 519 | 52 | 556 | 2.90e-91 | 290 |
| Msa0391600 | MtrunA17_Chr2g0295531 | 32.664 | 548 | 323 | 14 | 2 | 524 | 17 | 543 | 4.49e-91 | 291 |
| Msa0391600 | MtrunA17_Chr8g0380581 | 42.690 | 342 | 191 | 3 | 184 | 524 | 36 | 373 | 3.11e-89 | 279 |
| Msa0391600 | MtrunA17_Chr2g0295551 | 34.334 | 533 | 295 | 12 | 28 | 526 | 52 | 563 | 3.35e-87 | 279 |
| Msa0391600 | MtrunA17_Chr7g0270651 | 36.575 | 473 | 274 | 11 | 68 | 527 | 115 | 574 | 2.18e-85 | 275 |
| Msa0391600 | MtrunA17_Chr7g0270661 | 40.000 | 395 | 219 | 7 | 140 | 522 | 181 | 569 | 1.16e-83 | 270 |
| Msa0391600 | MtrunA17_Chr7g0270671 | 40.000 | 395 | 219 | 7 | 140 | 522 | 181 | 569 | 1.16e-83 | 270 |
| Msa0391600 | MtrunA17_Chr2g0301931 | 45.833 | 288 | 150 | 4 | 240 | 527 | 11 | 292 | 4.77e-82 | 257 |
| Msa0391600 | MtrunA17_Chr5g0437831 | 39.045 | 356 | 205 | 7 | 178 | 527 | 34 | 383 | 1.26e-80 | 256 |
| Msa0391600 | MtrunA17_Chr2g0295541 | 31.104 | 598 | 319 | 14 | 2 | 526 | 17 | 594 | 3.06e-80 | 262 |
| Msa0391600 | MtrunA17_Chr7g0270631 | 35.824 | 455 | 270 | 11 | 68 | 513 | 103 | 544 | 3.03e-78 | 266 |
| Msa0391600 | MtrunA17_Chr7g0270631 | 39.496 | 357 | 193 | 6 | 193 | 527 | 767 | 1122 | 7.72e-71 | 245 |
| Msa0391600 | MtrunA17_Chr7g0270691 | 34.504 | 484 | 274 | 11 | 54 | 527 | 99 | 549 | 3.52e-77 | 253 |
| Msa0391600 | MtrunA17_Chr2g0334111 | 40.952 | 315 | 170 | 6 | 214 | 527 | 24 | 323 | 3.00e-74 | 238 |
| Msa0391600 | MtrunA17_Chr7g0268241 | 37.500 | 368 | 209 | 9 | 162 | 527 | 2 | 350 | 1.03e-73 | 238 |
| Msa0391600 | MtrunA17_Chr7g0271381 | 29.690 | 549 | 345 | 18 | 1 | 527 | 27 | 556 | 5.01e-63 | 215 |
| Msa0391600 | MtrunA17_Chr6g0453551 | 33.660 | 306 | 177 | 6 | 215 | 510 | 6 | 295 | 2.90e-55 | 188 |
| Msa0391600 | MtrunA17_Chr6g0487101 | 35.345 | 348 | 190 | 11 | 187 | 516 | 50 | 380 | 5.43e-54 | 187 |
| Msa0391600 | MtrunA17_Chr8g0389771 | 35.629 | 334 | 179 | 12 | 197 | 516 | 66 | 377 | 8.16e-52 | 181 |
| Msa0391600 | MtrunA17_Chr1g0194311 | 36.593 | 317 | 174 | 8 | 212 | 518 | 71 | 370 | 2.17e-51 | 179 |
| Msa0391600 | MtrunA17_Chr8g0391261 | 56.522 | 138 | 59 | 1 | 390 | 527 | 30 | 166 | 5.19e-51 | 172 |
| Msa0391600 | MtrunA17_Chr7g0217941 | 33.569 | 283 | 165 | 5 | 217 | 489 | 8 | 277 | 9.14e-49 | 171 |
| Msa0391600 | MtrunA17_Chr2g0299431 | 41.841 | 239 | 134 | 5 | 188 | 424 | 26 | 261 | 9.15e-45 | 159 |
| Msa0391600 | MtrunA17_Chr6g0466961 | 35.587 | 281 | 154 | 8 | 215 | 489 | 40 | 299 | 5.87e-44 | 158 |
| Msa0391600 | MtrunA17_Chr6g0466951 | 34.643 | 280 | 158 | 8 | 215 | 489 | 69 | 328 | 2.51e-43 | 157 |
| Msa0391600 | MtrunA17_Chr5g0446301 | 34.091 | 308 | 174 | 9 | 221 | 516 | 67 | 357 | 3.82e-43 | 157 |
| Msa0391600 | MtrunA17_Chr8g0391281 | 34.507 | 284 | 157 | 7 | 36 | 297 | 34 | 310 | 8.75e-43 | 155 |
| Msa0391600 | MtrunA17_Chr7g0258341 | 32.803 | 314 | 187 | 7 | 215 | 518 | 90 | 389 | 1.41e-42 | 156 |
| Msa0391600 | MtrunA17_Chr7g0265201 | 30.081 | 369 | 213 | 11 | 156 | 516 | 54 | 385 | 3.35e-42 | 155 |
| Msa0391600 | MtrunA17_Chr4g0070051 | 31.402 | 328 | 194 | 10 | 198 | 516 | 38 | 343 | 3.58e-41 | 151 |
| Msa0391600 | MtrunA17_Chr1g0161731 | 32.680 | 306 | 175 | 9 | 199 | 489 | 26 | 315 | 1.60e-40 | 149 |
| Msa0391600 | MtrunA17_Chr5g0399221 | 30.380 | 316 | 193 | 8 | 215 | 519 | 63 | 362 | 5.67e-40 | 148 |
| Msa0391600 | MtrunA17_Chr2g0294321 | 30.435 | 322 | 195 | 8 | 204 | 516 | 45 | 346 | 6.60e-38 | 142 |
| Msa0391600 | MtrunA17_Chr5g0440871 | 31.900 | 279 | 171 | 6 | 211 | 489 | 35 | 294 | 1.03e-35 | 135 |
| Msa0391600 | MtrunA17_Chr4g0037751 | 29.464 | 336 | 206 | 9 | 196 | 516 | 42 | 361 | 2.78e-35 | 135 |
| Msa0391600 | MtrunA17_Chr5g0420831 | 29.080 | 337 | 206 | 9 | 196 | 516 | 42 | 361 | 1.24e-32 | 128 |
| Msa0391600 | MtrunA17_Chr2g0295851 | 28.483 | 323 | 191 | 10 | 204 | 516 | 44 | 336 | 1.60e-30 | 121 |
| Msa0391600 | MtrunA17_Chr6g0459781 | 38.012 | 171 | 93 | 4 | 217 | 377 | 15 | 182 | 7.16e-30 | 116 |
| Msa0391600 | MtrunA17_Chr8g0351871 | 30.345 | 290 | 174 | 9 | 209 | 489 | 28 | 298 | 2.21e-29 | 118 |
| Msa0391600 | MtrunA17_Chr4g0025841 | 31.727 | 249 | 152 | 4 | 211 | 459 | 33 | 263 | 4.82e-28 | 113 |
| Msa0391600 | MtrunA17_Chr2g0314691 | 33.500 | 200 | 113 | 5 | 320 | 516 | 19 | 201 | 5.58e-26 | 105 |
| Msa0391600 | MtrunA17_Chr5g0437821 | 37.121 | 132 | 82 | 1 | 329 | 459 | 4 | 135 | 7.24e-25 | 100 |
| Msa0391600 | MtrunA17_Chr5g0440901 | 35.526 | 152 | 88 | 2 | 308 | 459 | 1 | 142 | 3.86e-24 | 98.6 |
| Msa0391600 | MtrunA17_Chr7g0265161 | 34.066 | 182 | 87 | 5 | 281 | 457 | 5 | 158 | 3.22e-22 | 95.9 |
| Msa0391600 | MtrunA17_Chr6g0460141 | 36.429 | 140 | 81 | 4 | 244 | 375 | 5 | 144 | 1.06e-18 | 83.2 |
| Msa0391600 | MtrunA17_Chr4g0073911 | 33.742 | 163 | 94 | 4 | 244 | 397 | 36 | 193 | 2.26e-18 | 84.7 |
| Msa0391600 | MtrunA17_Chr5g0440891 | 32.919 | 161 | 100 | 3 | 215 | 375 | 48 | 200 | 1.95e-16 | 78.2 |
| Msa0391600 | MtrunA17_Chr6g0459791 | 37.302 | 126 | 67 | 3 | 392 | 517 | 4 | 117 | 5.60e-15 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391600 | AT3G47400.1 | 55.792 | 518 | 212 | 8 | 26 | 527 | 78 | 594 | 0.0 | 582 |
| Msa0391600 | AT5G51500.1 | 55.882 | 510 | 210 | 11 | 29 | 527 | 35 | 540 | 0.0 | 579 |
| Msa0391600 | AT5G51490.1 | 55.159 | 504 | 211 | 7 | 35 | 527 | 37 | 536 | 0.0 | 578 |
| Msa0391600 | AT2G45220.1 | 49.231 | 520 | 248 | 10 | 9 | 527 | 7 | 511 | 4.01e-173 | 498 |
| Msa0391600 | AT4G00190.1 | 45.030 | 493 | 244 | 9 | 36 | 527 | 8 | 474 | 9.55e-141 | 414 |
| Msa0391600 | AT1G23200.1 | 42.991 | 535 | 244 | 12 | 36 | 527 | 38 | 554 | 4.52e-137 | 408 |
| Msa0391600 | AT1G11580.1 | 42.831 | 537 | 283 | 11 | 1 | 523 | 27 | 553 | 5.61e-134 | 400 |
| Msa0391600 | AT1G11580.2 | 42.831 | 537 | 283 | 11 | 1 | 523 | 48 | 574 | 1.68e-133 | 400 |
| Msa0391600 | AT3G60730.1 | 45.175 | 456 | 213 | 8 | 102 | 527 | 71 | 519 | 1.18e-131 | 393 |
| Msa0391600 | AT5G53370.1 | 45.354 | 452 | 222 | 7 | 97 | 527 | 138 | 585 | 5.82e-129 | 388 |
| Msa0391600 | AT5G53370.2 | 45.354 | 452 | 222 | 7 | 97 | 527 | 174 | 621 | 1.63e-128 | 388 |
| Msa0391600 | AT4G02320.1 | 43.326 | 487 | 241 | 9 | 68 | 527 | 40 | 518 | 5.11e-128 | 384 |
| Msa0391600 | AT3G14310.1 | 45.895 | 475 | 209 | 9 | 96 | 527 | 123 | 592 | 2.14e-126 | 382 |
| Msa0391600 | AT3G43270.1 | 45.067 | 446 | 222 | 7 | 102 | 527 | 83 | 525 | 5.37e-126 | 379 |
| Msa0391600 | AT4G02300.1 | 44.470 | 443 | 223 | 9 | 102 | 527 | 96 | 532 | 8.03e-126 | 379 |
| Msa0391600 | AT1G53830.1 | 46.087 | 460 | 210 | 8 | 102 | 527 | 132 | 587 | 1.67e-124 | 377 |
| Msa0391600 | AT3G49220.1 | 44.469 | 452 | 224 | 8 | 97 | 527 | 151 | 596 | 6.35e-124 | 376 |
| Msa0391600 | AT5G04960.1 | 41.811 | 519 | 263 | 14 | 27 | 525 | 63 | 562 | 7.78e-124 | 374 |
| Msa0391600 | AT3G49220.3 | 44.469 | 452 | 224 | 8 | 97 | 527 | 196 | 641 | 3.37e-123 | 375 |
| Msa0391600 | AT3G59010.1 | 44.632 | 475 | 231 | 9 | 69 | 527 | 70 | 528 | 3.75e-122 | 369 |
| Msa0391600 | AT4G02330.1 | 39.298 | 570 | 290 | 14 | 8 | 527 | 8 | 571 | 6.73e-122 | 370 |
| Msa0391600 | AT4G33220.1 | 43.107 | 457 | 225 | 7 | 102 | 527 | 71 | 523 | 6.83e-122 | 368 |
| Msa0391600 | AT1G02810.1 | 37.955 | 577 | 289 | 12 | 10 | 527 | 11 | 577 | 3.44e-121 | 368 |
| Msa0391600 | AT4G33220.2 | 51.156 | 346 | 166 | 3 | 182 | 527 | 60 | 402 | 3.65e-121 | 362 |
| Msa0391600 | AT2G43050.1 | 43.671 | 474 | 229 | 12 | 69 | 527 | 66 | 516 | 2.58e-118 | 358 |
| Msa0391600 | AT5G20860.2 | 37.705 | 549 | 309 | 13 | 1 | 527 | 1 | 538 | 7.23e-118 | 358 |
| Msa0391600 | AT3G05620.1 | 46.650 | 403 | 193 | 8 | 134 | 527 | 152 | 541 | 9.15e-118 | 358 |
| Msa0391600 | AT3G10710.1 | 38.121 | 564 | 284 | 14 | 1 | 527 | 26 | 561 | 3.69e-116 | 355 |
| Msa0391600 | AT2G47550.1 | 44.731 | 427 | 203 | 7 | 132 | 527 | 134 | 558 | 7.36e-115 | 351 |
| Msa0391600 | AT2G26440.1 | 38.158 | 532 | 282 | 13 | 27 | 527 | 32 | 547 | 1.85e-114 | 350 |
| Msa0391600 | AT5G49180.1 | 40.206 | 485 | 258 | 10 | 68 | 523 | 85 | 566 | 8.30e-113 | 346 |
| Msa0391600 | AT2G26450.1 | 39.669 | 484 | 263 | 10 | 58 | 527 | 143 | 611 | 4.01e-112 | 346 |
| Msa0391600 | AT5G27870.1 | 40.333 | 481 | 261 | 11 | 68 | 527 | 87 | 562 | 3.53e-111 | 347 |
| Msa0391600 | AT3G05610.1 | 38.716 | 514 | 283 | 11 | 36 | 527 | 62 | 565 | 1.33e-110 | 343 |
| Msa0391600 | AT3G27980.1 | 44.750 | 400 | 205 | 9 | 135 | 527 | 107 | 497 | 5.52e-109 | 334 |
| Msa0391600 | AT1G11590.1 | 38.416 | 505 | 282 | 13 | 43 | 527 | 29 | 524 | 4.31e-108 | 333 |
| Msa0391600 | AT4G33230.1 | 40.583 | 446 | 241 | 9 | 103 | 527 | 164 | 606 | 5.10e-108 | 335 |
| Msa0391600 | AT3G10720.2 | 37.058 | 537 | 289 | 9 | 36 | 527 | 83 | 615 | 4.40e-107 | 333 |
| Msa0391600 | AT4G03930.1 | 37.849 | 502 | 285 | 12 | 45 | 527 | 31 | 524 | 6.97e-107 | 329 |
| Msa0391600 | AT3G06830.1 | 39.421 | 449 | 243 | 10 | 103 | 525 | 121 | 566 | 2.78e-106 | 329 |
| Msa0391600 | AT5G04970.1 | 35.940 | 537 | 295 | 9 | 36 | 527 | 88 | 620 | 9.98e-105 | 327 |
| Msa0391600 | AT1G53840.1 | 36.122 | 526 | 289 | 12 | 29 | 521 | 70 | 581 | 9.75e-103 | 321 |
| Msa0391600 | AT3G10720.1 | 55.172 | 261 | 115 | 2 | 267 | 527 | 1 | 259 | 2.77e-99 | 301 |
| Msa0391600 | AT3G14300.1 | 37.428 | 521 | 279 | 12 | 24 | 512 | 448 | 953 | 1.50e-97 | 317 |
| Msa0391600 | AT5G20860.1 | 39.857 | 419 | 206 | 8 | 98 | 506 | 107 | 489 | 3.43e-96 | 301 |
| Msa0391600 | AT4G15980.1 | 43.333 | 360 | 196 | 6 | 171 | 525 | 344 | 700 | 4.28e-94 | 301 |
| Msa0391600 | AT4G15980.2 | 43.333 | 360 | 196 | 6 | 171 | 525 | 354 | 710 | 7.08e-94 | 301 |
| Msa0391600 | AT5G09760.1 | 48.161 | 299 | 141 | 5 | 209 | 494 | 235 | 532 | 4.36e-85 | 274 |
| Msa0391600 | AT5G09760.2 | 48.161 | 299 | 141 | 5 | 209 | 494 | 261 | 558 | 1.01e-84 | 273 |
| Msa0391600 | AT1G11370.1 | 49.798 | 247 | 123 | 1 | 212 | 458 | 43 | 288 | 1.85e-83 | 261 |
| Msa0391600 | AT5G64640.1 | 43.731 | 327 | 160 | 7 | 209 | 519 | 283 | 601 | 3.52e-81 | 265 |
| Msa0391600 | AT2G47030.1 | 39.326 | 356 | 198 | 6 | 186 | 527 | 237 | 588 | 3.92e-74 | 246 |
| Msa0391600 | AT2G47040.1 | 38.527 | 353 | 202 | 6 | 186 | 527 | 247 | 595 | 1.35e-72 | 242 |
| Msa0391600 | AT3G62170.1 | 38.440 | 359 | 191 | 9 | 193 | 527 | 236 | 588 | 9.47e-70 | 234 |
| Msa0391600 | AT2G21610.1 | 33.993 | 303 | 178 | 7 | 215 | 516 | 51 | 332 | 1.90e-51 | 179 |
| Msa0391600 | AT2G21610.2 | 33.993 | 303 | 178 | 7 | 215 | 516 | 56 | 337 | 3.24e-51 | 179 |
| Msa0391600 | AT2G36710.1 | 33.856 | 319 | 188 | 8 | 212 | 521 | 86 | 390 | 1.26e-50 | 179 |
| Msa0391600 | AT2G36700.1 | 34.591 | 318 | 185 | 9 | 207 | 516 | 31 | 333 | 1.56e-50 | 176 |
| Msa0391600 | AT5G19730.1 | 31.492 | 362 | 203 | 11 | 178 | 516 | 42 | 381 | 2.64e-50 | 177 |
| Msa0391600 | AT3G29090.1 | 33.684 | 285 | 162 | 6 | 217 | 489 | 9 | 278 | 9.39e-49 | 171 |
| Msa0391600 | AT1G05310.1 | 32.698 | 315 | 182 | 7 | 215 | 516 | 91 | 388 | 9.53e-45 | 162 |
| Msa0391600 | AT3G17060.1 | 31.269 | 323 | 191 | 8 | 204 | 516 | 35 | 336 | 6.03e-43 | 156 |
| Msa0391600 | AT5G47500.1 | 29.697 | 330 | 201 | 8 | 200 | 517 | 48 | 358 | 1.75e-40 | 150 |
| Msa0391600 | AT5G07430.1 | 29.972 | 357 | 215 | 11 | 174 | 516 | 20 | 355 | 4.43e-40 | 149 |
| Msa0391600 | AT1G44980.1 | 37.991 | 229 | 135 | 5 | 157 | 379 | 14 | 241 | 5.49e-39 | 142 |
| Msa0391600 | AT5G55590.1 | 33.333 | 318 | 183 | 9 | 211 | 516 | 78 | 378 | 3.35e-38 | 144 |
| Msa0391600 | AT3G24130.1 | 32.168 | 286 | 168 | 7 | 215 | 489 | 34 | 304 | 3.81e-38 | 143 |
| Msa0391600 | AT5G07420.1 | 30.383 | 339 | 203 | 10 | 193 | 516 | 35 | 355 | 1.92e-37 | 142 |
| Msa0391600 | AT5G55590.2 | 34.866 | 261 | 145 | 6 | 211 | 459 | 78 | 325 | 2.07e-37 | 141 |
| Msa0391600 | AT5G18990.1 | 30.303 | 297 | 178 | 8 | 204 | 489 | 21 | 299 | 1.03e-33 | 130 |
| Msa0391600 | AT5G61680.1 | 27.988 | 343 | 213 | 10 | 190 | 516 | 34 | 358 | 8.89e-33 | 129 |
| Msa0391600 | AT5G07410.1 | 29.167 | 336 | 206 | 11 | 195 | 516 | 38 | 355 | 1.03e-32 | 129 |
| Msa0391600 | AT1G69940.1 | 28.177 | 362 | 226 | 12 | 171 | 516 | 12 | 355 | 6.10e-32 | 126 |
| Msa0391600 | AT5G26810.1 | 29.252 | 294 | 170 | 8 | 215 | 489 | 34 | 308 | 3.20e-31 | 124 |
| Msa0391600 | AT2G19150.1 | 27.607 | 326 | 208 | 8 | 207 | 523 | 33 | 339 | 3.19e-30 | 121 |
| Msa0391600 | AT2G19150.2 | 29.389 | 262 | 161 | 6 | 207 | 459 | 33 | 279 | 1.09e-27 | 112 |
| Msa0391600 | AT2G47280.1 | 28.819 | 288 | 181 | 7 | 211 | 489 | 31 | 303 | 1.56e-27 | 113 |
| Msa0391600 | AT3G49220.2 | 30.631 | 222 | 128 | 7 | 97 | 297 | 196 | 412 | 7.37e-24 | 104 |
Find 104 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCCACAATTGTCAAATT+AGG | 0.096980 | 3_2:-4001315 | Msa0391600:CDS |
| TCGTACCTTTGTTATGTTTC+AGG | 0.180730 | 3_2:+4002367 | None:intergenic |
| TCATGCATAGAAAACCATTT+TGG | 0.206714 | 3_2:+4002208 | None:intergenic |
| GCATGGTAAGAGCTTGGTTT+AGG | 0.232125 | 3_2:+4002694 | None:intergenic |
| ACTTCTAGAACTTGTTATTA+TGG | 0.232263 | 3_2:+4001961 | None:intergenic |
| GCTCAAGACACATTGTATTA+TGG | 0.240578 | 3_2:-4001142 | Msa0391600:CDS |
| ACGGTTGCTGGACTCCTTGC+TGG | 0.264051 | 3_2:-4001022 | Msa0391600:CDS |
| ACCACAAGATTGTACTTTAC+TGG | 0.266090 | 3_2:+4002160 | None:intergenic |
| ATTCCACAATTGTCAAATTA+GGG | 0.271376 | 3_2:-4001314 | Msa0391600:CDS |
| AAGAAGGGTCATTTCCAAAA+TGG | 0.284001 | 3_2:-4002222 | Msa0391600:CDS |
| TATCGACAATGCTTCATCTA+TGG | 0.297382 | 3_2:-4001475 | Msa0391600:CDS |
| GCATCAAAGTTTACGGTTGC+TGG | 0.302438 | 3_2:-4001034 | Msa0391600:CDS |
| GGAATGAAATTCCAGTGTTT+TGG | 0.313831 | 3_2:+4001332 | None:intergenic |
| CATGGTAAGAGCTTGGTTTA+GGG | 0.317299 | 3_2:+4002695 | None:intergenic |
| CATTTAAATTTAGGTATTGA+TGG | 0.320933 | 3_2:-4001658 | Msa0391600:intron |
| TGACAAGTACAAAACCTTCT+TGG | 0.322544 | 3_2:-4001266 | Msa0391600:CDS |
| TCAAACATAGAGTTGAATTC+AGG | 0.324256 | 3_2:-4002737 | Msa0391600:CDS |
| GATCAAAGACCAGAAGTAAA+TGG | 0.330015 | 3_2:+4000971 | None:intergenic |
| CATCTCAACCGCACACTTGA+AGG | 0.335481 | 3_2:-4002573 | Msa0391600:CDS |
| GGCACTGTAGACTTCATCTT+TGG | 0.336037 | 3_2:-4001454 | Msa0391600:CDS |
| AAAGGAAGCATCAAAGTTTA+CGG | 0.343984 | 3_2:-4001041 | Msa0391600:CDS |
| GTAAACTTTGATGCTTCCTT+TGG | 0.345344 | 3_2:+4001043 | None:intergenic |
| ACTACTGTGCCATTTACTTC+TGG | 0.356059 | 3_2:-4000980 | Msa0391600:CDS |
| CAACAGCAAATAGAGTAAAA+TGG | 0.362307 | 3_2:-4001090 | Msa0391600:CDS |
| GAATGGGTCACCACGACCTT+GGG | 0.383001 | 3_2:+4001354 | None:intergenic |
| GACAAGTACAAAACCTTCTT+GGG | 0.387883 | 3_2:-4001265 | Msa0391600:CDS |
| TTTCAGGAAATGCATATTGA+TGG | 0.392962 | 3_2:+4002383 | None:intergenic |
| TGTGTGGACCGGCAGTATTT+TGG | 0.404472 | 3_2:+4001605 | None:intergenic |
| AGCCATGTTTGTGCATCATT+TGG | 0.409326 | 3_2:+4002522 | None:intergenic |
| CCAATGTCACTGAGATGTTA+AGG | 0.412297 | 3_2:-4002416 | Msa0391600:CDS |
| GCAACAATATTCAAGAGTTA+TGG | 0.414279 | 3_2:-4001233 | Msa0391600:CDS |
| AATTGAAATATGGCAATCAT+TGG | 0.415279 | 3_2:-4002918 | None:intergenic |
| TATGGTGAATATGAAAACTA+TGG | 0.416977 | 3_2:-4001124 | Msa0391600:CDS |
| TCAGTGCATAAAACGGTTCA+TGG | 0.448897 | 3_2:-4002630 | Msa0391600:CDS |
| GGAATGGGTCACCACGACCT+TGG | 0.450335 | 3_2:+4001353 | None:intergenic |
| AAACCTTCTTGGGAAGGCCT+TGG | 0.458014 | 3_2:-4001255 | Msa0391600:CDS |
| GTGGTAGCAAAAGATGGTTC+TGG | 0.463626 | 3_2:-4002142 | Msa0391600:CDS |
| CAGCCCTAATTTGACAATTG+TGG | 0.474354 | 3_2:+4001311 | None:intergenic |
| ATGTAGTGTTTGCATGGCTT+AGG | 0.476541 | 3_2:+4002786 | None:intergenic |
| CTTCCTCAAGCAACATAGAT+TGG | 0.484124 | 3_2:-4002830 | Msa0391600:CDS |
| AGCTTGACCCTTGTGTGGAC+CGG | 0.488154 | 3_2:+4001594 | None:intergenic |
| GGGATATCAAGACACTTTGA+TGG | 0.491175 | 3_2:-4001518 | Msa0391600:CDS |
| ATTGTACTTTACTGGAGACT+TGG | 0.493638 | 3_2:+4002168 | None:intergenic |
| AATATTGAAACATGTAAAAG+TGG | 0.495425 | 3_2:-4002483 | Msa0391600:CDS |
| TTTGTGATACATGTTAAGAA+AGG | 0.500212 | 3_2:-4002058 | Msa0391600:CDS |
| CAAACATAGAGTTGAATTCA+GGG | 0.504754 | 3_2:-4002736 | Msa0391600:CDS |
| TCAATAGCCTCATCAAGAAA+AGG | 0.505321 | 3_2:-4002855 | Msa0391600:CDS |
| ATGATCACGGCCCAAGGTCG+TGG | 0.507704 | 3_2:-4001364 | Msa0391600:CDS |
| CTATTTGCTGTTGATGAACC+AGG | 0.508404 | 3_2:+4001100 | None:intergenic |
| TTGCCAAGGCCTTCCCAAGA+AGG | 0.511374 | 3_2:+4001252 | None:intergenic |
| GGGCCGTGATCATGTTAGCT+TGG | 0.512801 | 3_2:+4001374 | None:intergenic |
| TGTGTTATGTAGTGTTTGCA+TGG | 0.515684 | 3_2:+4002780 | None:intergenic |
| CAGAGAGATCGGAGGCTGAT+CGG | 0.519200 | 3_2:+4001563 | None:intergenic |
| CCTTAACATCTCAGTGACAT+TGG | 0.524868 | 3_2:+4002416 | None:intergenic |
| CATCTTTGGCAACGCTGCAG+TGG | 0.532133 | 3_2:-4001440 | Msa0391600:CDS |
| AATCTTGTGGTAGCAAAAGA+TGG | 0.533550 | 3_2:-4002148 | Msa0391600:CDS |
| TTCGCAAGAAAACCTTTGGA+TGG | 0.535998 | 3_2:-4001397 | Msa0391600:CDS |
| ACTCTTGAATATTGTTGCCA+AGG | 0.536658 | 3_2:+4001238 | None:intergenic |
| ACCCCATGGAGACCAACCTA+GGG | 0.538985 | 3_2:+4001177 | None:intergenic |
| TCACTTACAGAAACAAAAGA+AGG | 0.542875 | 3_2:-4002238 | Msa0391600:intron |
| TGCTGTTGCAGAGCTATAAG+TGG | 0.543731 | 3_2:+4001922 | None:intergenic |
| AACATTATGCTGGTTGGTGA+TGG | 0.543858 | 3_2:-4001995 | Msa0391600:CDS |
| GCAAATAGAGTAAAATGGCC+TGG | 0.544601 | 3_2:-4001085 | Msa0391600:CDS |
| CAATCTATGTTGCTTGAGGA+AGG | 0.551632 | 3_2:+4002831 | None:intergenic |
| TGTTTGCATGGCTTAGGATG+TGG | 0.552680 | 3_2:+4002792 | None:intergenic |
| AAATACTGCCGGTCCACACA+AGG | 0.553589 | 3_2:-4001602 | Msa0391600:CDS |
| AAATTCATCAGTGCATAAAA+CGG | 0.555036 | 3_2:-4002637 | Msa0391600:CDS |
| ACTTATAGCTCTGCAACAGC+AGG | 0.557059 | 3_2:-4001920 | Msa0391600:intron |
| AGTTCTAGAAGTGTTCAAGA+TGG | 0.562676 | 3_2:-4001950 | Msa0391600:CDS |
| CACCAAATGATGCACAAACA+TGG | 0.565228 | 3_2:-4002524 | Msa0391600:CDS |
| CCTTGCTGGACCAACGTGGT+TGG | 0.568742 | 3_2:-4001008 | Msa0391600:CDS |
| CCTCAAGCAACATAGATTGG+TGG | 0.569379 | 3_2:-4002827 | Msa0391600:CDS |
| ATGTTAGCTTGGCCATCCAA+AGG | 0.577954 | 3_2:+4001385 | None:intergenic |
| CCGGTAAAAGACAGAGAGAT+CGG | 0.579063 | 3_2:+4001552 | None:intergenic |
| TCATAATGATAACATTATGC+TGG | 0.579993 | 3_2:-4002005 | Msa0391600:CDS |
| AATGATAACATTATGCTGGT+TGG | 0.589997 | 3_2:-4002001 | Msa0391600:CDS |
| CTAAGAGAAAATACAAGACA+AGG | 0.594762 | 3_2:-4002081 | Msa0391600:CDS |
| TCCACACAAGGGTCAAGCTG+TGG | 0.596715 | 3_2:-4001590 | Msa0391600:CDS |
| GCCACAGCTTGACCCTTGTG+TGG | 0.600879 | 3_2:+4001589 | None:intergenic |
| CACCCCATGGAGACCAACCT+AGG | 0.600934 | 3_2:+4001176 | None:intergenic |
| CCACCAATCTATGTTGCTTG+AGG | 0.601277 | 3_2:+4002827 | None:intergenic |
| GCTAACATGATCACGGCCCA+AGG | 0.605067 | 3_2:-4001370 | Msa0391600:CDS |
| TCCAGTAAAGTACAATCTTG+TGG | 0.606248 | 3_2:-4002161 | Msa0391600:CDS |
| ATAACCTTCCAAAATACTGC+CGG | 0.608318 | 3_2:-4001613 | Msa0391600:CDS |
| TTTGTTATCACATGATAACC+AGG | 0.610464 | 3_2:+4001067 | None:intergenic |
| GGTGACCCATTCCAAAACAC+TGG | 0.613436 | 3_2:-4001343 | Msa0391600:CDS |
| TGTTTATAGAGAGAACATTG+AGG | 0.615615 | 3_2:-4002035 | Msa0391600:CDS |
| TGTTTAAGCCTTCAAGTGTG+CGG | 0.618251 | 3_2:+4002565 | None:intergenic |
| GCAAAATCAGTGTCACCCCA+TGG | 0.619580 | 3_2:+4001163 | None:intergenic |
| TCATGTGATAACAAATCCAA+AGG | 0.625043 | 3_2:-4001059 | Msa0391600:CDS |
| CCAACCACGTTGGTCCAGCA+AGG | 0.629318 | 3_2:+4001008 | None:intergenic |
| AGTACAAAACCTTCTTGGGA+AGG | 0.639051 | 3_2:-4001261 | Msa0391600:CDS |
| TGGCCAAGCTAACATGATCA+CGG | 0.640356 | 3_2:-4001377 | Msa0391600:CDS |
| CCCCTAGGTTGGTCTCCATG+GGG | 0.648245 | 3_2:-4001178 | Msa0391600:CDS |
| CACTTACAGAAACAAAAGAA+GGG | 0.648620 | 3_2:-4002237 | Msa0391600:intron |
| GAATATGAAAACTATGGACC+TGG | 0.667216 | 3_2:-4001118 | Msa0391600:CDS |
| AATACTGCCGGTCCACACAA+GGG | 0.680140 | 3_2:-4001601 | Msa0391600:CDS |
| CCCCATGGAGACCAACCTAG+GGG | 0.685055 | 3_2:+4001178 | None:intergenic |
| CATTTCCTGAAACATAACAA+AGG | 0.694892 | 3_2:-4002372 | Msa0391600:intron |
| CCCATGGAGACCAACCTAGG+GGG | 0.713906 | 3_2:+4001179 | None:intergenic |
| GTAGTTGTTGCCAACCACGT+TGG | 0.739916 | 3_2:+4000998 | None:intergenic |
| GACTCCTTGCTGGACCAACG+TGG | 0.741755 | 3_2:-4001012 | Msa0391600:CDS |
| GTAAAAGACAGAGAGATCGG+AGG | 0.749268 | 3_2:+4001555 | None:intergenic |
| GATATCCCGATATAGCACAC+CGG | 0.753319 | 3_2:+4001533 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTAAAATTTTATAATAAGAT+AGG | - | chr3_2:4002121-4002140 | Msa0391600:CDS | 10.0% |
| !! | TATAATATTTAAATTATCCT+TGG | - | chr3_2:4002146-4002165 | Msa0391600:CDS | 10.0% |
| !! | ATAATATTTAAATTATCCTT+GGG | - | chr3_2:4002147-4002166 | Msa0391600:CDS | 10.0% |
| !!! | TTTTAAAAAATAATTACTCT+TGG | - | chr3_2:4002199-4002218 | Msa0391600:CDS | 10.0% |
| !!! | CTAAAATTTTATAATAAGAT+AGG | - | chr3_2:4002121-4002140 | Msa0391600:CDS | 10.0% |
| !! | TATAATATTTAAATTATCCT+TGG | - | chr3_2:4002146-4002165 | Msa0391600:CDS | 10.0% |
| !! | ATAATATTTAAATTATCCTT+GGG | - | chr3_2:4002147-4002166 | Msa0391600:CDS | 10.0% |
| !!! | TTTTAAAAAATAATTACTCT+TGG | - | chr3_2:4002199-4002218 | Msa0391600:CDS | 10.0% |
| !! | TAATATTTAAATTATCCTTG+GGG | - | chr3_2:4002148-4002167 | Msa0391600:CDS | 15.0% |
| !! | TAATATTTAAATTATCCTTG+GGG | - | chr3_2:4002148-4002167 | Msa0391600:CDS | 15.0% |
| !! | AATATTGAAACATGTAAAAG+TGG | - | chr3_2:4001399-4001418 | Msa0391600:CDS | 20.0% |
| !! | ACAAGAAAATAAAAAGAGAA+AGG | + | chr3_2:4002008-4002027 | None:intergenic | 20.0% |
| !!! | CATTTAAATTTAGGTATTGA+TGG | - | chr3_2:4002224-4002243 | Msa0391600:CDS | 20.0% |
| !!! | TTGCGAAAATTTTACAATTT+TGG | + | chr3_2:4002472-4002491 | None:intergenic | 20.0% |
| !! | AATATTGAAACATGTAAAAG+TGG | - | chr3_2:4001399-4001418 | Msa0391600:CDS | 20.0% |
| !! | ACAAGAAAATAAAAAGAGAA+AGG | + | chr3_2:4002008-4002027 | None:intergenic | 20.0% |
| !!! | CATTTAAATTTAGGTATTGA+TGG | - | chr3_2:4002224-4002243 | Msa0391600:CDS | 20.0% |
| !!! | TTGCGAAAATTTTACAATTT+TGG | + | chr3_2:4002472-4002491 | None:intergenic | 20.0% |
| ! | AAATTCATCAGTGCATAAAA+CGG | - | chr3_2:4001245-4001264 | Msa0391600:CDS | 25.0% |
| ! | CTAATCTTAATCGAAATTTC+TGG | - | chr3_2:4001616-4001635 | Msa0391600:CDS | 25.0% |
| ! | TTTGTGATACATGTTAAGAA+AGG | - | chr3_2:4001824-4001843 | Msa0391600:intron | 25.0% |
| ! | TCATAATGATAACATTATGC+TGG | - | chr3_2:4001877-4001896 | Msa0391600:intron | 25.0% |
| !!! | ACTTCTAGAACTTGTTATTA+TGG | + | chr3_2:4001924-4001943 | None:intergenic | 25.0% |
| ! | AAATAAAAAGAGAAAGGAGT+TGG | + | chr3_2:4002002-4002021 | None:intergenic | 25.0% |
| ! | TATCTTCTATGTTCAATAGT+TGG | + | chr3_2:4002057-4002076 | None:intergenic | 25.0% |
| ! | CTCTTGGATCATTTAAATTT+AGG | - | chr3_2:4002215-4002234 | Msa0391600:CDS | 25.0% |
| ! | ATTCCACAATTGTCAAATTA+GGG | - | chr3_2:4002568-4002587 | Msa0391600:CDS | 25.0% |
| !!! | TATGGTGATGAAAACTTTTA+TGG | - | chr3_2:4002667-4002686 | Msa0391600:CDS | 25.0% |
| ! | TATGGTGAATATGAAAACTA+TGG | - | chr3_2:4002758-4002777 | Msa0391600:CDS | 25.0% |
| ! | AAATTCATCAGTGCATAAAA+CGG | - | chr3_2:4001245-4001264 | Msa0391600:CDS | 25.0% |
| ! | CTAATCTTAATCGAAATTTC+TGG | - | chr3_2:4001616-4001635 | Msa0391600:CDS | 25.0% |
| ! | TTTGTGATACATGTTAAGAA+AGG | - | chr3_2:4001824-4001843 | Msa0391600:intron | 25.0% |
| ! | TCATAATGATAACATTATGC+TGG | - | chr3_2:4001877-4001896 | Msa0391600:intron | 25.0% |
| !!! | ACTTCTAGAACTTGTTATTA+TGG | + | chr3_2:4001924-4001943 | None:intergenic | 25.0% |
| ! | AAATAAAAAGAGAAAGGAGT+TGG | + | chr3_2:4002002-4002021 | None:intergenic | 25.0% |
| ! | TATCTTCTATGTTCAATAGT+TGG | + | chr3_2:4002057-4002076 | None:intergenic | 25.0% |
| ! | CTCTTGGATCATTTAAATTT+AGG | - | chr3_2:4002215-4002234 | Msa0391600:CDS | 25.0% |
| ! | ATTCCACAATTGTCAAATTA+GGG | - | chr3_2:4002568-4002587 | Msa0391600:CDS | 25.0% |
| !!! | TATGGTGATGAAAACTTTTA+TGG | - | chr3_2:4002667-4002686 | Msa0391600:CDS | 25.0% |
| ! | TATGGTGAATATGAAAACTA+TGG | - | chr3_2:4002758-4002777 | Msa0391600:CDS | 25.0% |
| TCAAACATAGAGTTGAATTC+AGG | - | chr3_2:4001145-4001164 | Msa0391600:CDS | 30.0% | |
| CAAACATAGAGTTGAATTCA+GGG | - | chr3_2:4001146-4001165 | Msa0391600:CDS | 30.0% | |
| TTTCAGGAAATGCATATTGA+TGG | + | chr3_2:4001502-4001521 | None:intergenic | 30.0% | |
| CATTTCCTGAAACATAACAA+AGG | - | chr3_2:4001510-4001529 | Msa0391600:CDS | 30.0% | |
| !!! | TCTTTTGTTTCTGTAAGTGA+CGG | + | chr3_2:4001644-4001663 | None:intergenic | 30.0% |
| TCACTTACAGAAACAAAAGA+AGG | - | chr3_2:4001644-4001663 | Msa0391600:CDS | 30.0% | |
| CACTTACAGAAACAAAAGAA+GGG | - | chr3_2:4001645-4001664 | Msa0391600:CDS | 30.0% | |
| ! | TCATGCATAGAAAACCATTT+TGG | + | chr3_2:4001677-4001696 | None:intergenic | 30.0% |
| ! | AATGGTTTTCTATGCATGAA+AGG | - | chr3_2:4001678-4001697 | Msa0391600:intron | 30.0% |
| CTAAGAGAAAATACAAGACA+AGG | - | chr3_2:4001801-4001820 | Msa0391600:intron | 30.0% | |
| TGTTTATAGAGAGAACATTG+AGG | - | chr3_2:4001847-4001866 | Msa0391600:intron | 30.0% | |
| AATGATAACATTATGCTGGT+TGG | - | chr3_2:4001881-4001900 | Msa0391600:intron | 30.0% | |
| ! | AATTTTCGCAAGAAAACCTT+TGG | - | chr3_2:4002481-4002500 | Msa0391600:CDS | 30.0% |
| !!! | AAATTCCAGTGTTTTGGAAT+GGG | + | chr3_2:4002547-4002566 | None:intergenic | 30.0% |
| CATTCCACAATTGTCAAATT+AGG | - | chr3_2:4002567-4002586 | Msa0391600:CDS | 30.0% | |
| GCAACAATATTCAAGAGTTA+TGG | - | chr3_2:4002649-4002668 | Msa0391600:CDS | 30.0% | |
| CAACAGCAAATAGAGTAAAA+TGG | - | chr3_2:4002792-4002811 | Msa0391600:CDS | 30.0% | |
| ! | TTTGTTATCACATGATAACC+AGG | + | chr3_2:4002818-4002837 | None:intergenic | 30.0% |
| TCATGTGATAACAAATCCAA+AGG | - | chr3_2:4002823-4002842 | Msa0391600:CDS | 30.0% | |
| !! | AAAGGAAGCATCAAAGTTTA+CGG | - | chr3_2:4002841-4002860 | Msa0391600:CDS | 30.0% |
| TCAAACATAGAGTTGAATTC+AGG | - | chr3_2:4001145-4001164 | Msa0391600:CDS | 30.0% | |
| CAAACATAGAGTTGAATTCA+GGG | - | chr3_2:4001146-4001165 | Msa0391600:CDS | 30.0% | |
| TTTCAGGAAATGCATATTGA+TGG | + | chr3_2:4001502-4001521 | None:intergenic | 30.0% | |
| CATTTCCTGAAACATAACAA+AGG | - | chr3_2:4001510-4001529 | Msa0391600:CDS | 30.0% | |
| !!! | TCTTTTGTTTCTGTAAGTGA+CGG | + | chr3_2:4001644-4001663 | None:intergenic | 30.0% |
| TCACTTACAGAAACAAAAGA+AGG | - | chr3_2:4001644-4001663 | Msa0391600:CDS | 30.0% | |
| CACTTACAGAAACAAAAGAA+GGG | - | chr3_2:4001645-4001664 | Msa0391600:CDS | 30.0% | |
| ! | TCATGCATAGAAAACCATTT+TGG | + | chr3_2:4001677-4001696 | None:intergenic | 30.0% |
| ! | AATGGTTTTCTATGCATGAA+AGG | - | chr3_2:4001678-4001697 | Msa0391600:intron | 30.0% |
| CTAAGAGAAAATACAAGACA+AGG | - | chr3_2:4001801-4001820 | Msa0391600:intron | 30.0% | |
| TGTTTATAGAGAGAACATTG+AGG | - | chr3_2:4001847-4001866 | Msa0391600:intron | 30.0% | |
| AATGATAACATTATGCTGGT+TGG | - | chr3_2:4001881-4001900 | Msa0391600:intron | 30.0% | |
| ! | AATTTTCGCAAGAAAACCTT+TGG | - | chr3_2:4002481-4002500 | Msa0391600:CDS | 30.0% |
| !!! | AAATTCCAGTGTTTTGGAAT+GGG | + | chr3_2:4002547-4002566 | None:intergenic | 30.0% |
| CATTCCACAATTGTCAAATT+AGG | - | chr3_2:4002567-4002586 | Msa0391600:CDS | 30.0% | |
| GCAACAATATTCAAGAGTTA+TGG | - | chr3_2:4002649-4002668 | Msa0391600:CDS | 30.0% | |
| CAACAGCAAATAGAGTAAAA+TGG | - | chr3_2:4002792-4002811 | Msa0391600:CDS | 30.0% | |
| ! | TTTGTTATCACATGATAACC+AGG | + | chr3_2:4002818-4002837 | None:intergenic | 30.0% |
| TCATGTGATAACAAATCCAA+AGG | - | chr3_2:4002823-4002842 | Msa0391600:CDS | 30.0% | |
| !! | AAAGGAAGCATCAAAGTTTA+CGG | - | chr3_2:4002841-4002860 | Msa0391600:CDS | 30.0% |
| TCAATAGCCTCATCAAGAAA+AGG | - | chr3_2:4001027-4001046 | Msa0391600:CDS | 35.0% | |
| TGTGTTATGTAGTGTTTGCA+TGG | + | chr3_2:4001105-4001124 | None:intergenic | 35.0% | |
| ! | TCGTACCTTTGTTATGTTTC+AGG | + | chr3_2:4001518-4001537 | None:intergenic | 35.0% |
| AAGAAGGGTCATTTCCAAAA+TGG | - | chr3_2:4001660-4001679 | Msa0391600:intron | 35.0% | |
| ATTGTACTTTACTGGAGACT+TGG | + | chr3_2:4001717-4001736 | None:intergenic | 35.0% | |
| TCCAGTAAAGTACAATCTTG+TGG | - | chr3_2:4001721-4001740 | Msa0391600:intron | 35.0% | |
| ACCACAAGATTGTACTTTAC+TGG | + | chr3_2:4001725-4001744 | None:intergenic | 35.0% | |
| AATCTTGTGGTAGCAAAAGA+TGG | - | chr3_2:4001734-4001753 | Msa0391600:intron | 35.0% | |
| !! | AGTTCTAGAAGTGTTCAAGA+TGG | - | chr3_2:4001932-4001951 | Msa0391600:CDS | 35.0% |
| TTGAATGTAAAAAAGCCCCA+AGG | + | chr3_2:4002166-4002185 | None:intergenic | 35.0% | |
| ATAACCTTCCAAAATACTGC+CGG | - | chr3_2:4002269-4002288 | Msa0391600:intron | 35.0% | |
| TATCGACAATGCTTCATCTA+TGG | - | chr3_2:4002407-4002426 | Msa0391600:CDS | 35.0% | |
| !!! | GAAATTCCAGTGTTTTGGAA+TGG | + | chr3_2:4002548-4002567 | None:intergenic | 35.0% |
| ! | GGAATGAAATTCCAGTGTTT+TGG | + | chr3_2:4002553-4002572 | None:intergenic | 35.0% |
| ! | GTTTTGTACTTGTCAACAAC+AGG | + | chr3_2:4002611-4002630 | None:intergenic | 35.0% |
| TGACAAGTACAAAACCTTCT+TGG | - | chr3_2:4002616-4002635 | Msa0391600:CDS | 35.0% | |
| GACAAGTACAAAACCTTCTT+GGG | - | chr3_2:4002617-4002636 | Msa0391600:CDS | 35.0% | |
| ACTCTTGAATATTGTTGCCA+AGG | + | chr3_2:4002647-4002666 | None:intergenic | 35.0% | |
| GCTCAAGACACATTGTATTA+TGG | - | chr3_2:4002740-4002759 | Msa0391600:CDS | 35.0% | |
| GAATATGAAAACTATGGACC+TGG | - | chr3_2:4002764-4002783 | Msa0391600:CDS | 35.0% | |
| GTAAACTTTGATGCTTCCTT+TGG | + | chr3_2:4002842-4002861 | None:intergenic | 35.0% | |
| TCAATAGCCTCATCAAGAAA+AGG | - | chr3_2:4001027-4001046 | Msa0391600:CDS | 35.0% | |
| TGTGTTATGTAGTGTTTGCA+TGG | + | chr3_2:4001105-4001124 | None:intergenic | 35.0% | |
| ! | TCGTACCTTTGTTATGTTTC+AGG | + | chr3_2:4001518-4001537 | None:intergenic | 35.0% |
| AAGAAGGGTCATTTCCAAAA+TGG | - | chr3_2:4001660-4001679 | Msa0391600:intron | 35.0% | |
| ATTGTACTTTACTGGAGACT+TGG | + | chr3_2:4001717-4001736 | None:intergenic | 35.0% | |
| TCCAGTAAAGTACAATCTTG+TGG | - | chr3_2:4001721-4001740 | Msa0391600:intron | 35.0% | |
| ACCACAAGATTGTACTTTAC+TGG | + | chr3_2:4001725-4001744 | None:intergenic | 35.0% | |
| AATCTTGTGGTAGCAAAAGA+TGG | - | chr3_2:4001734-4001753 | Msa0391600:intron | 35.0% | |
| !! | AGTTCTAGAAGTGTTCAAGA+TGG | - | chr3_2:4001932-4001951 | Msa0391600:CDS | 35.0% |
| TTGAATGTAAAAAAGCCCCA+AGG | + | chr3_2:4002166-4002185 | None:intergenic | 35.0% | |
| ATAACCTTCCAAAATACTGC+CGG | - | chr3_2:4002269-4002288 | Msa0391600:intron | 35.0% | |
| TATCGACAATGCTTCATCTA+TGG | - | chr3_2:4002407-4002426 | Msa0391600:CDS | 35.0% | |
| !!! | GAAATTCCAGTGTTTTGGAA+TGG | + | chr3_2:4002548-4002567 | None:intergenic | 35.0% |
| ! | GGAATGAAATTCCAGTGTTT+TGG | + | chr3_2:4002553-4002572 | None:intergenic | 35.0% |
| ! | GTTTTGTACTTGTCAACAAC+AGG | + | chr3_2:4002611-4002630 | None:intergenic | 35.0% |
| TGACAAGTACAAAACCTTCT+TGG | - | chr3_2:4002616-4002635 | Msa0391600:CDS | 35.0% | |
| GACAAGTACAAAACCTTCTT+GGG | - | chr3_2:4002617-4002636 | Msa0391600:CDS | 35.0% | |
| ACTCTTGAATATTGTTGCCA+AGG | + | chr3_2:4002647-4002666 | None:intergenic | 35.0% | |
| GCTCAAGACACATTGTATTA+TGG | - | chr3_2:4002740-4002759 | Msa0391600:CDS | 35.0% | |
| GAATATGAAAACTATGGACC+TGG | - | chr3_2:4002764-4002783 | Msa0391600:CDS | 35.0% | |
| GTAAACTTTGATGCTTCCTT+TGG | + | chr3_2:4002842-4002861 | None:intergenic | 35.0% | |
| ! | CAATCTATGTTGCTTGAGGA+AGG | + | chr3_2:4001054-4001073 | None:intergenic | 40.0% |
| CTTCCTCAAGCAACATAGAT+TGG | - | chr3_2:4001052-4001071 | Msa0391600:CDS | 40.0% | |
| ATGTAGTGTTTGCATGGCTT+AGG | + | chr3_2:4001099-4001118 | None:intergenic | 40.0% | |
| CATGGTAAGAGCTTGGTTTA+GGG | + | chr3_2:4001190-4001209 | None:intergenic | 40.0% | |
| ! | CTTTTTGCATGGTAAGAGCT+TGG | + | chr3_2:4001197-4001216 | None:intergenic | 40.0% |
| ! | TTCTTGTGCGTCTTTTTGCA+TGG | + | chr3_2:4001208-4001227 | None:intergenic | 40.0% |
| TCAGTGCATAAAACGGTTCA+TGG | - | chr3_2:4001252-4001271 | Msa0391600:CDS | 40.0% | |
| TGTTTAAGCCTTCAAGTGTG+CGG | + | chr3_2:4001320-4001339 | None:intergenic | 40.0% | |
| CACCAAATGATGCACAAACA+TGG | - | chr3_2:4001358-4001377 | Msa0391600:CDS | 40.0% | |
| AGCCATGTTTGTGCATCATT+TGG | + | chr3_2:4001363-4001382 | None:intergenic | 40.0% | |
| CCTTAACATCTCAGTGACAT+TGG | + | chr3_2:4001469-4001488 | None:intergenic | 40.0% | |
| CCAATGTCACTGAGATGTTA+AGG | - | chr3_2:4001466-4001485 | Msa0391600:CDS | 40.0% | |
| !! | AACATTATGCTGGTTGGTGA+TGG | - | chr3_2:4001887-4001906 | Msa0391600:intron | 40.0% |
| ! | CTTTTACCGGTGTGCTATAT+CGG | - | chr3_2:4002343-4002362 | Msa0391600:intron | 40.0% |
| ! | TTTTACCGGTGTGCTATATC+GGG | - | chr3_2:4002344-4002363 | Msa0391600:intron | 40.0% |
| GGGATATCAAGACACTTTGA+TGG | - | chr3_2:4002364-4002383 | Msa0391600:intron | 40.0% | |
| TTCGCAAGAAAACCTTTGGA+TGG | - | chr3_2:4002485-4002504 | Msa0391600:CDS | 40.0% | |
| CAGCCCTAATTTGACAATTG+TGG | + | chr3_2:4002574-4002593 | None:intergenic | 40.0% | |
| AGTACAAAACCTTCTTGGGA+AGG | - | chr3_2:4002621-4002640 | Msa0391600:CDS | 40.0% | |
| !! | CTATTTGCTGTTGATGAACC+AGG | + | chr3_2:4002785-4002804 | None:intergenic | 40.0% |
| GCAAATAGAGTAAAATGGCC+TGG | - | chr3_2:4002797-4002816 | Msa0391600:CDS | 40.0% | |
| !! | ACTACTGTGCCATTTACTTC+TGG | - | chr3_2:4002902-4002921 | Msa0391600:CDS | 40.0% |
| ! | CAATCTATGTTGCTTGAGGA+AGG | + | chr3_2:4001054-4001073 | None:intergenic | 40.0% |
| CTTCCTCAAGCAACATAGAT+TGG | - | chr3_2:4001052-4001071 | Msa0391600:CDS | 40.0% | |
| ATGTAGTGTTTGCATGGCTT+AGG | + | chr3_2:4001099-4001118 | None:intergenic | 40.0% | |
| CATGGTAAGAGCTTGGTTTA+GGG | + | chr3_2:4001190-4001209 | None:intergenic | 40.0% | |
| ! | CTTTTTGCATGGTAAGAGCT+TGG | + | chr3_2:4001197-4001216 | None:intergenic | 40.0% |
| ! | TTCTTGTGCGTCTTTTTGCA+TGG | + | chr3_2:4001208-4001227 | None:intergenic | 40.0% |
| TCAGTGCATAAAACGGTTCA+TGG | - | chr3_2:4001252-4001271 | Msa0391600:CDS | 40.0% | |
| TGTTTAAGCCTTCAAGTGTG+CGG | + | chr3_2:4001320-4001339 | None:intergenic | 40.0% | |
| CACCAAATGATGCACAAACA+TGG | - | chr3_2:4001358-4001377 | Msa0391600:CDS | 40.0% | |
| AGCCATGTTTGTGCATCATT+TGG | + | chr3_2:4001363-4001382 | None:intergenic | 40.0% | |
| CCTTAACATCTCAGTGACAT+TGG | + | chr3_2:4001469-4001488 | None:intergenic | 40.0% | |
| CCAATGTCACTGAGATGTTA+AGG | - | chr3_2:4001466-4001485 | Msa0391600:CDS | 40.0% | |
| !! | AACATTATGCTGGTTGGTGA+TGG | - | chr3_2:4001887-4001906 | Msa0391600:intron | 40.0% |
| ! | CTTTTACCGGTGTGCTATAT+CGG | - | chr3_2:4002343-4002362 | Msa0391600:intron | 40.0% |
| ! | TTTTACCGGTGTGCTATATC+GGG | - | chr3_2:4002344-4002363 | Msa0391600:intron | 40.0% |
| GGGATATCAAGACACTTTGA+TGG | - | chr3_2:4002364-4002383 | Msa0391600:intron | 40.0% | |
| TTCGCAAGAAAACCTTTGGA+TGG | - | chr3_2:4002485-4002504 | Msa0391600:CDS | 40.0% | |
| CAGCCCTAATTTGACAATTG+TGG | + | chr3_2:4002574-4002593 | None:intergenic | 40.0% | |
| AGTACAAAACCTTCTTGGGA+AGG | - | chr3_2:4002621-4002640 | Msa0391600:CDS | 40.0% | |
| !! | CTATTTGCTGTTGATGAACC+AGG | + | chr3_2:4002785-4002804 | None:intergenic | 40.0% |
| GCAAATAGAGTAAAATGGCC+TGG | - | chr3_2:4002797-4002816 | Msa0391600:CDS | 40.0% | |
| !! | ACTACTGTGCCATTTACTTC+TGG | - | chr3_2:4002902-4002921 | Msa0391600:CDS | 40.0% |
| ! | GGAAGGTCCTTTTCTTGATG+AGG | + | chr3_2:4001037-4001056 | None:intergenic | 45.0% |
| ! | CCACCAATCTATGTTGCTTG+AGG | + | chr3_2:4001058-4001077 | None:intergenic | 45.0% |
| CCTCAAGCAACATAGATTGG+TGG | - | chr3_2:4001055-4001074 | Msa0391600:CDS | 45.0% | |
| TGTTTGCATGGCTTAGGATG+TGG | + | chr3_2:4001093-4001112 | None:intergenic | 45.0% | |
| GCATGGTAAGAGCTTGGTTT+AGG | + | chr3_2:4001191-4001210 | None:intergenic | 45.0% | |
| GTGGTAGCAAAAGATGGTTC+TGG | - | chr3_2:4001740-4001759 | Msa0391600:intron | 45.0% | |
| TGCTGTTGCAGAGCTATAAG+TGG | + | chr3_2:4001963-4001982 | None:intergenic | 45.0% | |
| ! | ACTTATAGCTCTGCAACAGC+AGG | - | chr3_2:4001962-4001981 | Msa0391600:CDS | 45.0% |
| GTAAAAGACAGAGAGATCGG+AGG | + | chr3_2:4002330-4002349 | None:intergenic | 45.0% | |
| CCGGTAAAAGACAGAGAGAT+CGG | + | chr3_2:4002333-4002352 | None:intergenic | 45.0% | |
| ! | CCGATCTCTCTGTCTTTTAC+CGG | - | chr3_2:4002330-4002349 | Msa0391600:intron | 45.0% |
| GATATCCCGATATAGCACAC+CGG | + | chr3_2:4002352-4002371 | None:intergenic | 45.0% | |
| GGCACTGTAGACTTCATCTT+TGG | - | chr3_2:4002428-4002447 | Msa0391600:CDS | 45.0% | |
| ! | ATGTTAGCTTGGCCATCCAA+AGG | + | chr3_2:4002500-4002519 | None:intergenic | 45.0% |
| TGGCCAAGCTAACATGATCA+CGG | - | chr3_2:4002505-4002524 | Msa0391600:CDS | 45.0% | |
| GCATCAAAGTTTACGGTTGC+TGG | - | chr3_2:4002848-4002867 | Msa0391600:CDS | 45.0% | |
| ! | GGAAGGTCCTTTTCTTGATG+AGG | + | chr3_2:4001037-4001056 | None:intergenic | 45.0% |
| ! | CCACCAATCTATGTTGCTTG+AGG | + | chr3_2:4001058-4001077 | None:intergenic | 45.0% |
| CCTCAAGCAACATAGATTGG+TGG | - | chr3_2:4001055-4001074 | Msa0391600:CDS | 45.0% | |
| TGTTTGCATGGCTTAGGATG+TGG | + | chr3_2:4001093-4001112 | None:intergenic | 45.0% | |
| GCATGGTAAGAGCTTGGTTT+AGG | + | chr3_2:4001191-4001210 | None:intergenic | 45.0% | |
| GTGGTAGCAAAAGATGGTTC+TGG | - | chr3_2:4001740-4001759 | Msa0391600:intron | 45.0% | |
| TGCTGTTGCAGAGCTATAAG+TGG | + | chr3_2:4001963-4001982 | None:intergenic | 45.0% | |
| ! | ACTTATAGCTCTGCAACAGC+AGG | - | chr3_2:4001962-4001981 | Msa0391600:CDS | 45.0% |
| GTAAAAGACAGAGAGATCGG+AGG | + | chr3_2:4002330-4002349 | None:intergenic | 45.0% | |
| CCGGTAAAAGACAGAGAGAT+CGG | + | chr3_2:4002333-4002352 | None:intergenic | 45.0% | |
| ! | CCGATCTCTCTGTCTTTTAC+CGG | - | chr3_2:4002330-4002349 | Msa0391600:intron | 45.0% |
| GATATCCCGATATAGCACAC+CGG | + | chr3_2:4002352-4002371 | None:intergenic | 45.0% | |
| GGCACTGTAGACTTCATCTT+TGG | - | chr3_2:4002428-4002447 | Msa0391600:CDS | 45.0% | |
| ! | ATGTTAGCTTGGCCATCCAA+AGG | + | chr3_2:4002500-4002519 | None:intergenic | 45.0% |
| TGGCCAAGCTAACATGATCA+CGG | - | chr3_2:4002505-4002524 | Msa0391600:CDS | 45.0% | |
| GCATCAAAGTTTACGGTTGC+TGG | - | chr3_2:4002848-4002867 | Msa0391600:CDS | 45.0% | |
| !!! | TAAAATTTTATAATAAGATA+GGG | - | chr3_2:4002122-4002141 | Msa0391600:CDS | 5.0% |
| !!! | TAAAATTTTATAATAAGATA+GGG | - | chr3_2:4002122-4002141 | Msa0391600:CDS | 5.0% |
| CATCTCAACCGCACACTTGA+AGG | - | chr3_2:4001309-4001328 | Msa0391600:CDS | 50.0% | |
| !! | TGGACCGGCAGTATTTTGGA+AGG | + | chr3_2:4002276-4002295 | None:intergenic | 50.0% |
| ! | TGTGTGGACCGGCAGTATTT+TGG | + | chr3_2:4002280-4002299 | None:intergenic | 50.0% |
| AAATACTGCCGGTCCACACA+AGG | - | chr3_2:4002280-4002299 | Msa0391600:intron | 50.0% | |
| AATACTGCCGGTCCACACAA+GGG | - | chr3_2:4002281-4002300 | Msa0391600:intron | 50.0% | |
| GGTGACCCATTCCAAAACAC+TGG | - | chr3_2:4002539-4002558 | Msa0391600:CDS | 50.0% | |
| AAACCTTCTTGGGAAGGCCT+TGG | - | chr3_2:4002627-4002646 | Msa0391600:CDS | 50.0% | |
| GCAAAATCAGTGTCACCCCA+TGG | + | chr3_2:4002722-4002741 | None:intergenic | 50.0% | |
| GTAGTTGTTGCCAACCACGT+TGG | + | chr3_2:4002887-4002906 | None:intergenic | 50.0% | |
| CATCTCAACCGCACACTTGA+AGG | - | chr3_2:4001309-4001328 | Msa0391600:CDS | 50.0% | |
| !! | TGGACCGGCAGTATTTTGGA+AGG | + | chr3_2:4002276-4002295 | None:intergenic | 50.0% |
| ! | TGTGTGGACCGGCAGTATTT+TGG | + | chr3_2:4002280-4002299 | None:intergenic | 50.0% |
| AAATACTGCCGGTCCACACA+AGG | - | chr3_2:4002280-4002299 | Msa0391600:intron | 50.0% | |
| AATACTGCCGGTCCACACAA+GGG | - | chr3_2:4002281-4002300 | Msa0391600:intron | 50.0% | |
| GGTGACCCATTCCAAAACAC+TGG | - | chr3_2:4002539-4002558 | Msa0391600:CDS | 50.0% | |
| AAACCTTCTTGGGAAGGCCT+TGG | - | chr3_2:4002627-4002646 | Msa0391600:CDS | 50.0% | |
| GCAAAATCAGTGTCACCCCA+TGG | + | chr3_2:4002722-4002741 | None:intergenic | 50.0% | |
| GTAGTTGTTGCCAACCACGT+TGG | + | chr3_2:4002887-4002906 | None:intergenic | 50.0% | |
| AGCTTGACCCTTGTGTGGAC+CGG | + | chr3_2:4002291-4002310 | None:intergenic | 55.0% | |
| TCCACACAAGGGTCAAGCTG+TGG | - | chr3_2:4002292-4002311 | Msa0391600:intron | 55.0% | |
| CAGAGAGATCGGAGGCTGAT+CGG | + | chr3_2:4002322-4002341 | None:intergenic | 55.0% | |
| CATCTTTGGCAACGCTGCAG+TGG | - | chr3_2:4002442-4002461 | Msa0391600:CDS | 55.0% | |
| GGGCCGTGATCATGTTAGCT+TGG | + | chr3_2:4002511-4002530 | None:intergenic | 55.0% | |
| GCTAACATGATCACGGCCCA+AGG | - | chr3_2:4002512-4002531 | Msa0391600:CDS | 55.0% | |
| GAATGGGTCACCACGACCTT+GGG | + | chr3_2:4002531-4002550 | None:intergenic | 55.0% | |
| TTGCCAAGGCCTTCCCAAGA+AGG | + | chr3_2:4002633-4002652 | None:intergenic | 55.0% | |
| GACACTTTAGTGAGCCCCCT+AGG | - | chr3_2:4002689-4002708 | Msa0391600:CDS | 55.0% | |
| CTTTAGTGAGCCCCCTAGGT+TGG | - | chr3_2:4002693-4002712 | Msa0391600:CDS | 55.0% | |
| ACCCCATGGAGACCAACCTA+GGG | + | chr3_2:4002708-4002727 | None:intergenic | 55.0% | |
| AGCTTGACCCTTGTGTGGAC+CGG | + | chr3_2:4002291-4002310 | None:intergenic | 55.0% | |
| TCCACACAAGGGTCAAGCTG+TGG | - | chr3_2:4002292-4002311 | Msa0391600:intron | 55.0% | |
| CAGAGAGATCGGAGGCTGAT+CGG | + | chr3_2:4002322-4002341 | None:intergenic | 55.0% | |
| CATCTTTGGCAACGCTGCAG+TGG | - | chr3_2:4002442-4002461 | Msa0391600:CDS | 55.0% | |
| GGGCCGTGATCATGTTAGCT+TGG | + | chr3_2:4002511-4002530 | None:intergenic | 55.0% | |
| GCTAACATGATCACGGCCCA+AGG | - | chr3_2:4002512-4002531 | Msa0391600:CDS | 55.0% | |
| GAATGGGTCACCACGACCTT+GGG | + | chr3_2:4002531-4002550 | None:intergenic | 55.0% | |
| TTGCCAAGGCCTTCCCAAGA+AGG | + | chr3_2:4002633-4002652 | None:intergenic | 55.0% | |
| GACACTTTAGTGAGCCCCCT+AGG | - | chr3_2:4002689-4002708 | Msa0391600:CDS | 55.0% | |
| CTTTAGTGAGCCCCCTAGGT+TGG | - | chr3_2:4002693-4002712 | Msa0391600:CDS | 55.0% | |
| ACCCCATGGAGACCAACCTA+GGG | + | chr3_2:4002708-4002727 | None:intergenic | 55.0% | |
| GCCACAGCTTGACCCTTGTG+TGG | + | chr3_2:4002296-4002315 | None:intergenic | 60.0% | |
| ATGATCACGGCCCAAGGTCG+TGG | - | chr3_2:4002518-4002537 | Msa0391600:CDS | 60.0% | |
| GGAATGGGTCACCACGACCT+TGG | + | chr3_2:4002532-4002551 | None:intergenic | 60.0% | |
| CCCATGGAGACCAACCTAGG+GGG | + | chr3_2:4002706-4002725 | None:intergenic | 60.0% | |
| !! | CCCCCTAGGTTGGTCTCCAT+GGG | - | chr3_2:4002703-4002722 | Msa0391600:CDS | 60.0% |
| CCCCATGGAGACCAACCTAG+GGG | + | chr3_2:4002707-4002726 | None:intergenic | 60.0% | |
| !! | CCCCTAGGTTGGTCTCCATG+GGG | - | chr3_2:4002704-4002723 | Msa0391600:CDS | 60.0% |
| CACCCCATGGAGACCAACCT+AGG | + | chr3_2:4002709-4002728 | None:intergenic | 60.0% | |
| ACGGTTGCTGGACTCCTTGC+TGG | - | chr3_2:4002860-4002879 | Msa0391600:CDS | 60.0% | |
| GACTCCTTGCTGGACCAACG+TGG | - | chr3_2:4002870-4002889 | Msa0391600:CDS | 60.0% | |
| CCAACCACGTTGGTCCAGCA+AGG | + | chr3_2:4002877-4002896 | None:intergenic | 60.0% | |
| CCTTGCTGGACCAACGTGGT+TGG | - | chr3_2:4002874-4002893 | Msa0391600:CDS | 60.0% | |
| GCCACAGCTTGACCCTTGTG+TGG | + | chr3_2:4002296-4002315 | None:intergenic | 60.0% | |
| ATGATCACGGCCCAAGGTCG+TGG | - | chr3_2:4002518-4002537 | Msa0391600:CDS | 60.0% | |
| GGAATGGGTCACCACGACCT+TGG | + | chr3_2:4002532-4002551 | None:intergenic | 60.0% | |
| CCCATGGAGACCAACCTAGG+GGG | + | chr3_2:4002706-4002725 | None:intergenic | 60.0% | |
| !! | CCCCCTAGGTTGGTCTCCAT+GGG | - | chr3_2:4002703-4002722 | Msa0391600:CDS | 60.0% |
| CCCCATGGAGACCAACCTAG+GGG | + | chr3_2:4002707-4002726 | None:intergenic | 60.0% | |
| !! | CCCCTAGGTTGGTCTCCATG+GGG | - | chr3_2:4002704-4002723 | Msa0391600:CDS | 60.0% |
| CACCCCATGGAGACCAACCT+AGG | + | chr3_2:4002709-4002728 | None:intergenic | 60.0% | |
| ACGGTTGCTGGACTCCTTGC+TGG | - | chr3_2:4002860-4002879 | Msa0391600:CDS | 60.0% | |
| GACTCCTTGCTGGACCAACG+TGG | - | chr3_2:4002870-4002889 | Msa0391600:CDS | 60.0% | |
| CCAACCACGTTGGTCCAGCA+AGG | + | chr3_2:4002877-4002896 | None:intergenic | 60.0% | |
| CCTTGCTGGACCAACGTGGT+TGG | - | chr3_2:4002874-4002893 | Msa0391600:CDS | 60.0% | |
| !! | GCCCCCTAGGTTGGTCTCCA+TGG | - | chr3_2:4002702-4002721 | Msa0391600:CDS | 65.0% |
| !! | GCCCCCTAGGTTGGTCTCCA+TGG | - | chr3_2:4002702-4002721 | Msa0391600:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 4000973 | 4002931 | 4000973 | ID=Msa0391600;Name=Msa0391600 |
| chr3_2 | mRNA | 4000973 | 4002931 | 4000973 | ID=Msa0391600-mRNA-1;Parent=Msa0391600;Name=Msa0391600-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|1|1|1|3|0|527 |
| chr3_2 | exon | 4002373 | 4002931 | 4002373 | ID=Msa0391600-mRNA-1:exon:1031;Parent=Msa0391600-mRNA-1 |
| chr3_2 | exon | 4001921 | 4002250 | 4001921 | ID=Msa0391600-mRNA-1:exon:1030;Parent=Msa0391600-mRNA-1 |
| chr3_2 | exon | 4000973 | 4001667 | 4000973 | ID=Msa0391600-mRNA-1:exon:1029;Parent=Msa0391600-mRNA-1 |
| chr3_2 | CDS | 4002373 | 4002931 | 4002373 | ID=Msa0391600-mRNA-1:cds;Parent=Msa0391600-mRNA-1 |
| chr3_2 | CDS | 4001921 | 4002250 | 4001921 | ID=Msa0391600-mRNA-1:cds;Parent=Msa0391600-mRNA-1 |
| chr3_2 | CDS | 4000973 | 4001667 | 4000973 | ID=Msa0391600-mRNA-1:cds;Parent=Msa0391600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
