AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0794100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0794100 MtrunA17_Chr5g0395001 94.643 168 9 0 1 168 1 168 7.33e-108 305
Msa0794100 MtrunA17_Chr1g0205201 65.455 165 36 3 1 164 1 145 1.45e-65 197
Msa0794100 MtrunA17_Chr1g0185321 51.892 185 72 3 1 168 1 185 1.37e-38 130
Msa0794100 MtrunA17_Chr7g0260061 51.701 147 64 4 1 141 1 146 3.03e-38 129
Msa0794100 MtrunA17_Chr1g0205181 50.000 150 52 4 1 149 1 128 6.02e-37 124
Msa0794100 MtrunA17_Chr1g0205191 60.748 107 40 1 1 107 1 105 2.46e-31 109
Msa0794100 MtrunA17_Chr1g0201291 57.955 88 34 2 1 87 1 86 6.98e-25 92.0
Msa0794100 MtrunA17_Chr5g0429901 36.508 126 66 5 7 119 4 128 7.28e-16 71.6
Msa0794100 MtrunA17_Chr3g0118471 42.353 85 46 2 24 105 46 130 2.22e-15 70.5
Msa0794100 MtrunA17_Chr2g0278971 35.606 132 73 5 7 127 48 178 7.13e-15 69.3
Msa0794100 MtrunA17_Chr2g0278981 35.714 98 60 2 25 120 32 128 4.66e-13 63.9
Msa0794100 MtrunA17_Chr5g0394991 33.571 140 81 7 1 130 1 138 9.06e-12 60.8
Msa0794100 MtrunA17_Chr8g0378461 31.092 119 72 3 25 134 33 150 1.56e-11 60.1
Msa0794100 MtrunA17_Chr6g0484651 39.437 71 42 1 28 98 43 112 2.02e-11 58.2
Msa0794100 MtrunA17_Chr3g0121381 36.486 74 46 1 25 97 28 101 7.41e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0794100 AT3G22600.1 53.757 173 67 6 5 168 2 170 7.41e-51 161
Msa0794100 AT4G14815.1 48.125 160 67 4 5 163 2 146 1.00e-39 132
Msa0794100 AT2G48130.2 42.286 175 86 5 1 162 1 173 9.37e-33 115
Msa0794100 AT2G48130.6 42.286 175 86 5 1 162 1 173 9.37e-33 115
Msa0794100 AT2G48130.4 42.286 175 86 5 1 162 1 173 9.37e-33 115
Msa0794100 AT2G48130.5 42.286 175 86 5 1 162 1 173 9.37e-33 115
Msa0794100 AT2G48130.1 42.286 175 86 5 1 162 1 173 9.37e-33 115
Msa0794100 AT2G48130.3 42.286 175 86 5 1 162 1 173 9.37e-33 115
Msa0794100 AT1G03103.1 41.520 171 83 6 6 161 1 169 5.30e-28 102
Msa0794100 AT3G43720.2 36.943 157 75 5 21 160 31 180 2.12e-17 75.9
Msa0794100 AT5G09370.2 40.000 90 50 2 26 113 26 113 7.37e-17 72.8
Msa0794100 AT5G09370.3 40.000 90 50 2 26 113 26 113 8.20e-17 73.6
Msa0794100 AT3G43720.1 36.709 158 76 5 21 160 31 182 8.75e-17 74.3
Msa0794100 AT5G09370.1 40.000 90 50 2 26 113 26 113 8.94e-17 73.6
Msa0794100 AT1G55260.2 25.275 182 116 5 1 164 44 223 4.56e-15 70.5
Msa0794100 AT2G13820.1 27.711 166 112 5 1 161 1 163 6.16e-15 68.9
Msa0794100 AT2G13820.3 27.711 166 112 5 1 161 13 175 8.18e-15 68.9
Msa0794100 AT1G55260.1 28.205 156 104 4 1 149 44 198 1.39e-14 69.3
Msa0794100 AT2G13820.2 31.034 116 74 4 1 113 1 113 4.89e-14 65.5
Msa0794100 AT4G08670.1 33.333 162 88 6 26 168 46 206 1.58e-13 65.9
Msa0794100 AT2G44290.1 31.875 160 91 6 6 149 9 166 5.04e-13 64.7
Msa0794100 AT2G48140.1 34.615 130 67 5 7 129 3 121 3.08e-12 62.4
Msa0794100 AT2G48140.2 35.652 115 66 4 7 114 3 116 5.65e-12 60.1
Msa0794100 AT3G22580.1 38.739 111 56 4 5 105 2 110 1.79e-11 58.9
Msa0794100 AT2G44300.1 39.726 73 43 1 25 96 32 104 3.43e-11 59.7
Msa0794100 AT1G36150.1 32.174 115 75 2 26 138 43 156 8.13e-11 59.3
Msa0794100 AT5G64080.2 30.282 142 87 6 28 163 43 178 9.08e-11 58.2

Find 69 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCCGTTGGTTCTTATTT+TGG 0.199878 5_3:+5895611 Msa0794100:CDS
CAGCAAAATGAATATGAGTT+TGG 0.304193 5_3:+5894824 Msa0794100:CDS
TGTGAAGACAATGGTGGTTT+TGG 0.312241 5_3:-5894716 None:intergenic
AATGAATATGAGTTTGGTTT+TGG 0.324175 5_3:+5894830 Msa0794100:CDS
GTTCCTGCTGGTGAGTCTGC+TGG 0.326138 5_3:-5895388 None:intergenic
GTACCTGATGGAACTGAGTT+TGG 0.355549 5_3:-5895424 None:intergenic
AATTCCTCAACCCCGTCTTC+AGG 0.363035 5_3:+5894948 Msa0794100:CDS
TTCCTGCTGGTGAGTCTGCT+GGG 0.376602 5_3:-5895387 None:intergenic
AGTCAGTGTAAAACTAATAA+TGG 0.381064 5_3:+5895122 Msa0794100:CDS
TACTGATTCTTTAATCAGTT+GGG 0.384390 5_3:+5895663 Msa0794100:three_prime_UTR
CAAAAGAATAGCATTTCAAA+TGG 0.424229 5_3:-5895689 None:intergenic
TTGAAATTTGTGTGTTGTCA+TGG 0.430863 5_3:+5895863 Msa0794100:three_prime_UTR
ATCAAAGTCCCTTGTGTTGA+AGG 0.438498 5_3:+5895749 Msa0794100:three_prime_UTR
GACTCTGCTTCTGTTCCTGC+TGG 0.439322 5_3:-5895400 None:intergenic
TTTGCATAAAACAATTCAAA+TGG 0.442092 5_3:+5894797 Msa0794100:exon
GCCTATGTCAGGTTCTCAGC+GGG 0.446999 5_3:+5895015 Msa0794100:CDS
AGCCTTGCCTGGTGCTTGCA+AGG 0.452642 5_3:+5895082 Msa0794100:CDS
TCCATCACCGGTTGAGGGAG+TGG 0.468250 5_3:-5895559 None:intergenic
TCAAAATCCACTCCCTCAAC+CGG 0.469317 5_3:+5895552 Msa0794100:CDS
ATACTGATTCTTTAATCAGT+TGG 0.471273 5_3:+5895662 Msa0794100:three_prime_UTR
TTTACACTGACTGGTGGGTG+GGG 0.471462 5_3:-5895111 None:intergenic
GGATGATCCATCACCGGTTG+AGG 0.472460 5_3:-5895565 None:intergenic
CAGCTTGATTGAATTTCCAC+TGG 0.474292 5_3:-5895586 None:intergenic
GTTTGCACCTTGCAAGCACC+AGG 0.476162 5_3:-5895089 None:intergenic
TTGAGCAGCATCCTGAAGAC+GGG 0.489604 5_3:-5894959 None:intergenic
TCCACTCCCTCAACCGGTGA+TGG 0.490607 5_3:+5895558 Msa0794100:CDS
TATAGTTAAGACAAGGTGAT+AGG 0.493717 5_3:-5894917 None:intergenic
ACTCAGGCTCTAGCCTTGCC+TGG 0.500358 5_3:+5895071 Msa0794100:CDS
CACCTTGCAAGCACCAGGCA+AGG 0.514952 5_3:-5895084 None:intergenic
ATCGAGTTGTACAAATGTCT+TGG 0.528842 5_3:+5894890 Msa0794100:CDS
CCTTGTCTTAACTATATCAC+AGG 0.529529 5_3:+5894924 Msa0794100:CDS
AATCAAGCTGTCAATTCCGT+TGG 0.530988 5_3:+5895599 Msa0794100:CDS
AAAAGAATAGCATTTCAAAT+GGG 0.533508 5_3:-5895688 None:intergenic
TCTCCAAACTCAGTTCCATC+AGG 0.538578 5_3:+5895421 Msa0794100:CDS
TCAAAGTCCCTTGTGTTGAA+GGG 0.544913 5_3:+5895750 Msa0794100:three_prime_UTR
GCATCCTGAAGACGGGGTTG+AGG 0.545184 5_3:-5894952 None:intergenic
ACAACCACTATGCCTATGTC+AGG 0.550990 5_3:+5895004 Msa0794100:CDS
TCCACTGGATGATCCATCAC+CGG 0.557164 5_3:-5895571 None:intergenic
TTTGAGCAGCATCCTGAAGA+CGG 0.563609 5_3:-5894960 None:intergenic
TGCAAATGTGTTGAAAACCT+TGG 0.565712 5_3:-5894780 None:intergenic
GATGATCCATCACCGGTTGA+GGG 0.571557 5_3:-5895564 None:intergenic
AAAATCACGTAACCCAATAG+AGG 0.575709 5_3:-5895794 None:intergenic
TCCCCAGCAGACTCACCAGC+AGG 0.577866 5_3:+5895385 Msa0794100:CDS
CTGCTCAAACCTTGCCAGTG+TGG 0.578926 5_3:+5894974 Msa0794100:CDS
CTGACAATATTAAGTTGATG+TGG 0.579771 5_3:-5894651 None:intergenic
TGTTCAGAGAACTGAGGCAT+AGG 0.581130 5_3:-5895640 None:intergenic
GTGAATTCACCACACTGGCA+AGG 0.582240 5_3:-5894983 None:intergenic
TCTCCTTTATGAATAAAACA+TGG 0.582589 5_3:+5895839 Msa0794100:three_prime_UTR
GTAATCGCAATGTTGTGCGC+TGG 0.583284 5_3:+5894855 Msa0794100:CDS
TCCTGCTGGTGAGTCTGCTG+GGG 0.602035 5_3:-5895386 None:intergenic
AGAACCTGACATAGGCATAG+TGG 0.603929 5_3:-5895008 None:intergenic
AATCAGCATCAATCAAACTC+AGG 0.612879 5_3:+5895055 Msa0794100:CDS
CTATGTCAGGTTCTCAGCGG+GGG 0.614715 5_3:+5895017 Msa0794100:CDS
TGTTTACTCTGTGAAGACAA+TGG 0.620490 5_3:-5894725 None:intergenic
ATATCTCGTTAGATAGTAGG+AGG 0.621459 5_3:+5894618 None:intergenic
AGACTGAACCCTTCAACACA+AGG 0.628092 5_3:-5895758 None:intergenic
TGCCTATGTCAGGTTCTCAG+CGG 0.639245 5_3:+5895014 Msa0794100:CDS
GACTGAACCCTTCAACACAA+GGG 0.644958 5_3:-5895757 None:intergenic
GCTGCCAAAATAAGAACCAA+CGG 0.650717 5_3:-5895615 None:intergenic
CCCCGCTGAGAACCTGACAT+AGG 0.652303 5_3:-5895016 None:intergenic
TGACAATATTAAGTTGATGT+GGG 0.657518 5_3:-5894650 None:intergenic
ACCGGTGATGGATCATCCAG+TGG 0.660594 5_3:+5895570 Msa0794100:CDS
CCTATGTCAGGTTCTCAGCG+GGG 0.669708 5_3:+5895016 Msa0794100:CDS
CCTGTGATATAGTTAAGACA+AGG 0.669942 5_3:-5894924 None:intergenic
CTTGTCTTAACTATATCACA+GGG 0.674749 5_3:+5894925 Msa0794100:CDS
TGGTTGTGAATTCACCACAC+TGG 0.698930 5_3:-5894988 None:intergenic
TGAGCAGCATCCTGAAGACG+GGG 0.700847 5_3:-5894958 None:intergenic
TTACTCTGTGAAGACAATGG+TGG 0.704767 5_3:-5894722 None:intergenic
TCAGTATGTTCAGAGAACTG+AGG 0.737979 5_3:-5895646 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATATAGTTTAGAATAT+GGG - chr5_3:5895327-5895346 None:intergenic 10.0%
!!! AAATATATAGTTTAGAATAT+GGG - chr5_3:5895327-5895346 None:intergenic 10.0%
!!! GAAATATATAGTTTAGAATA+TGG - chr5_3:5895328-5895347 None:intergenic 15.0%
!!! GAAATATATAGTTTAGAATA+TGG - chr5_3:5895328-5895347 None:intergenic 15.0%
!! TTTGCATAAAACAATTCAAA+TGG + chr5_3:5894797-5894816 Msa0794100:exon 20.0%
!! CAAATGAATTTCAACTTAAA+TGG - chr5_3:5895521-5895540 None:intergenic 20.0%
!! AAAAGAATAGCATTTCAAAT+GGG - chr5_3:5895691-5895710 None:intergenic 20.0%
!!! AATCCATGTTTTATTCATAA+AGG - chr5_3:5895845-5895864 None:intergenic 20.0%
!! TTTGCATAAAACAATTCAAA+TGG + chr5_3:5894797-5894816 Msa0794100:exon 20.0%
!! CAAATGAATTTCAACTTAAA+TGG - chr5_3:5895521-5895540 None:intergenic 20.0%
!! AAAAGAATAGCATTTCAAAT+GGG - chr5_3:5895691-5895710 None:intergenic 20.0%
!!! AATCCATGTTTTATTCATAA+AGG - chr5_3:5895845-5895864 None:intergenic 20.0%
!!! TGACAATATTAAGTTGATGT+GGG - chr5_3:5894653-5894672 None:intergenic 25.0%
! AACCAAAAAAGAATATACCA+AGG + chr5_3:5894763-5894782 Msa0794100:five_prime_UTR 25.0%
!!! AACCTTGGTATATTCTTTTT+TGG - chr5_3:5894768-5894787 None:intergenic 25.0%
!!! AATGAATATGAGTTTGGTTT+TGG + chr5_3:5894830-5894849 Msa0794100:CDS 25.0%
!!! ATTATTAGTTTTACACTGAC+TGG - chr5_3:5895123-5895142 None:intergenic 25.0%
! AGTCAGTGTAAAACTAATAA+TGG + chr5_3:5895122-5895141 Msa0794100:CDS 25.0%
! TCTCAATGTTCATATAGTTA+GGG - chr5_3:5895215-5895234 None:intergenic 25.0%
! ATCTCAATGTTCATATAGTT+AGG - chr5_3:5895216-5895235 None:intergenic 25.0%
!!! ACTTATCTTTTTGAGTATCA+AGG - chr5_3:5895300-5895319 None:intergenic 25.0%
! TTCAACTTAAATGGTTAACA+AGG - chr5_3:5895512-5895531 None:intergenic 25.0%
!!! TTAAGTTGAAATTCATTTGC+AGG + chr5_3:5895522-5895541 Msa0794100:intron 25.0%
!!! ATACTGATTCTTTAATCAGT+TGG + chr5_3:5895662-5895681 Msa0794100:three_prime_UTR 25.0%
!!! TACTGATTCTTTAATCAGTT+GGG + chr5_3:5895663-5895682 Msa0794100:three_prime_UTR 25.0%
! CAAAAGAATAGCATTTCAAA+TGG - chr5_3:5895692-5895711 None:intergenic 25.0%
! TCTCCTTTATGAATAAAACA+TGG + chr5_3:5895839-5895858 Msa0794100:three_prime_UTR 25.0%
!!! TGACAATATTAAGTTGATGT+GGG - chr5_3:5894653-5894672 None:intergenic 25.0%
! AACCAAAAAAGAATATACCA+AGG + chr5_3:5894763-5894782 Msa0794100:five_prime_UTR 25.0%
!!! AACCTTGGTATATTCTTTTT+TGG - chr5_3:5894768-5894787 None:intergenic 25.0%
!!! AATGAATATGAGTTTGGTTT+TGG + chr5_3:5894830-5894849 Msa0794100:CDS 25.0%
!!! ATTATTAGTTTTACACTGAC+TGG - chr5_3:5895123-5895142 None:intergenic 25.0%
! AGTCAGTGTAAAACTAATAA+TGG + chr5_3:5895122-5895141 Msa0794100:CDS 25.0%
! TCTCAATGTTCATATAGTTA+GGG - chr5_3:5895215-5895234 None:intergenic 25.0%
! ATCTCAATGTTCATATAGTT+AGG - chr5_3:5895216-5895235 None:intergenic 25.0%
!!! ACTTATCTTTTTGAGTATCA+AGG - chr5_3:5895300-5895319 None:intergenic 25.0%
! TTCAACTTAAATGGTTAACA+AGG - chr5_3:5895512-5895531 None:intergenic 25.0%
!!! TTAAGTTGAAATTCATTTGC+AGG + chr5_3:5895522-5895541 Msa0794100:intron 25.0%
!!! ATACTGATTCTTTAATCAGT+TGG + chr5_3:5895662-5895681 Msa0794100:three_prime_UTR 25.0%
!!! TACTGATTCTTTAATCAGTT+GGG + chr5_3:5895663-5895682 Msa0794100:three_prime_UTR 25.0%
! CAAAAGAATAGCATTTCAAA+TGG - chr5_3:5895692-5895711 None:intergenic 25.0%
! TCTCCTTTATGAATAAAACA+TGG + chr5_3:5895839-5895858 Msa0794100:three_prime_UTR 25.0%
!! CTGACAATATTAAGTTGATG+TGG - chr5_3:5894654-5894673 None:intergenic 30.0%
CAGCAAAATGAATATGAGTT+TGG + chr5_3:5894824-5894843 Msa0794100:CDS 30.0%
TATAGTTAAGACAAGGTGAT+AGG - chr5_3:5894920-5894939 None:intergenic 30.0%
CTTGTCTTAACTATATCACA+GGG + chr5_3:5894925-5894944 Msa0794100:CDS 30.0%
AATGTTCATATAGTTAGGGT+TGG - chr5_3:5895211-5895230 None:intergenic 30.0%
!!! AATTCCGTTGGTTCTTATTT+TGG + chr5_3:5895611-5895630 Msa0794100:CDS 30.0%
! ATTCATTTTGTGACCTCTAT+TGG + chr5_3:5895781-5895800 Msa0794100:three_prime_UTR 30.0%
! TTCATTTTGTGACCTCTATT+GGG + chr5_3:5895782-5895801 Msa0794100:three_prime_UTR 30.0%
! ACGTGATTTTGTATTATGAG+AGG + chr5_3:5895807-5895826 Msa0794100:three_prime_UTR 30.0%
! CGTGATTTTGTATTATGAGA+GGG + chr5_3:5895808-5895827 Msa0794100:three_prime_UTR 30.0%
TTGAAATTTGTGTGTTGTCA+TGG + chr5_3:5895863-5895882 Msa0794100:three_prime_UTR 30.0%
!! CTGACAATATTAAGTTGATG+TGG - chr5_3:5894654-5894673 None:intergenic 30.0%
CAGCAAAATGAATATGAGTT+TGG + chr5_3:5894824-5894843 Msa0794100:CDS 30.0%
TATAGTTAAGACAAGGTGAT+AGG - chr5_3:5894920-5894939 None:intergenic 30.0%
CTTGTCTTAACTATATCACA+GGG + chr5_3:5894925-5894944 Msa0794100:CDS 30.0%
AATGTTCATATAGTTAGGGT+TGG - chr5_3:5895211-5895230 None:intergenic 30.0%
!!! AATTCCGTTGGTTCTTATTT+TGG + chr5_3:5895611-5895630 Msa0794100:CDS 30.0%
! ATTCATTTTGTGACCTCTAT+TGG + chr5_3:5895781-5895800 Msa0794100:three_prime_UTR 30.0%
! TTCATTTTGTGACCTCTATT+GGG + chr5_3:5895782-5895801 Msa0794100:three_prime_UTR 30.0%
! ACGTGATTTTGTATTATGAG+AGG + chr5_3:5895807-5895826 Msa0794100:three_prime_UTR 30.0%
! CGTGATTTTGTATTATGAGA+GGG + chr5_3:5895808-5895827 Msa0794100:three_prime_UTR 30.0%
TTGAAATTTGTGTGTTGTCA+TGG + chr5_3:5895863-5895882 Msa0794100:three_prime_UTR 30.0%
!!! GTTTTGGAAGAACAATGTCT+AGG - chr5_3:5894703-5894722 None:intergenic 35.0%
TGTTTACTCTGTGAAGACAA+TGG - chr5_3:5894728-5894747 None:intergenic 35.0%
TGCAAATGTGTTGAAAACCT+TGG - chr5_3:5894783-5894802 None:intergenic 35.0%
! ATCGAGTTGTACAAATGTCT+TGG + chr5_3:5894890-5894909 Msa0794100:CDS 35.0%
CCTGTGATATAGTTAAGACA+AGG - chr5_3:5894927-5894946 None:intergenic 35.0%
CCTTGTCTTAACTATATCAC+AGG + chr5_3:5894924-5894943 Msa0794100:CDS 35.0%
AATCAGCATCAATCAAACTC+AGG + chr5_3:5895055-5895074 Msa0794100:CDS 35.0%
!!! TTAGTTTTACACTGACTGGT+GGG - chr5_3:5895119-5895138 None:intergenic 35.0%
!!! ATTAGTTTTACACTGACTGG+TGG - chr5_3:5895120-5895139 None:intergenic 35.0%
TCCATCAGGTACTAACATAT+TGG + chr5_3:5895435-5895454 Msa0794100:intron 35.0%
CCATCAGGTACTAACATATT+GGG + chr5_3:5895436-5895455 Msa0794100:intron 35.0%
CATCAGGTACTAACATATTG+GGG + chr5_3:5895437-5895456 Msa0794100:intron 35.0%
TGATCATCCAATTTGAACCT+TGG + chr5_3:5895486-5895505 Msa0794100:intron 35.0%
TTAAATGGTTAACAAGGCCA+AGG - chr5_3:5895506-5895525 None:intergenic 35.0%
TGAAATTCATTTGCAGGAAC+CGG + chr5_3:5895528-5895547 Msa0794100:intron 35.0%
AAAATCACGTAACCCAATAG+AGG - chr5_3:5895797-5895816 None:intergenic 35.0%
TTTATGACAACCACTGAAAG+AGG + chr5_3:5895888-5895907 Msa0794100:three_prime_UTR 35.0%
!!! GTTTTGGAAGAACAATGTCT+AGG - chr5_3:5894703-5894722 None:intergenic 35.0%
TGTTTACTCTGTGAAGACAA+TGG - chr5_3:5894728-5894747 None:intergenic 35.0%
TGCAAATGTGTTGAAAACCT+TGG - chr5_3:5894783-5894802 None:intergenic 35.0%
! ATCGAGTTGTACAAATGTCT+TGG + chr5_3:5894890-5894909 Msa0794100:CDS 35.0%
CCTGTGATATAGTTAAGACA+AGG - chr5_3:5894927-5894946 None:intergenic 35.0%
CCTTGTCTTAACTATATCAC+AGG + chr5_3:5894924-5894943 Msa0794100:CDS 35.0%
AATCAGCATCAATCAAACTC+AGG + chr5_3:5895055-5895074 Msa0794100:CDS 35.0%
!!! TTAGTTTTACACTGACTGGT+GGG - chr5_3:5895119-5895138 None:intergenic 35.0%
!!! ATTAGTTTTACACTGACTGG+TGG - chr5_3:5895120-5895139 None:intergenic 35.0%
TCCATCAGGTACTAACATAT+TGG + chr5_3:5895435-5895454 Msa0794100:intron 35.0%
CCATCAGGTACTAACATATT+GGG + chr5_3:5895436-5895455 Msa0794100:intron 35.0%
CATCAGGTACTAACATATTG+GGG + chr5_3:5895437-5895456 Msa0794100:intron 35.0%
TGATCATCCAATTTGAACCT+TGG + chr5_3:5895486-5895505 Msa0794100:intron 35.0%
TTAAATGGTTAACAAGGCCA+AGG - chr5_3:5895506-5895525 None:intergenic 35.0%
TGAAATTCATTTGCAGGAAC+CGG + chr5_3:5895528-5895547 Msa0794100:intron 35.0%
AAAATCACGTAACCCAATAG+AGG - chr5_3:5895797-5895816 None:intergenic 35.0%
! AGGCTTTTGTAGAGTAAGGA+CGG - chr5_3:5894683-5894702 None:intergenic 40.0%
! GTCTAGGCTTTTGTAGAGTA+AGG - chr5_3:5894687-5894706 None:intergenic 40.0%
! TGTGAAGACAATGGTGGTTT+TGG - chr5_3:5894719-5894738 None:intergenic 40.0%
TTACTCTGTGAAGACAATGG+TGG - chr5_3:5894725-5894744 None:intergenic 40.0%
CCCAATATGTTAGTACCTGA+TGG - chr5_3:5895439-5895458 None:intergenic 40.0%
AACAAGGCCAAGGTTCAAAT+TGG - chr5_3:5895496-5895515 None:intergenic 40.0%
CAGCTTGATTGAATTTCCAC+TGG - chr5_3:5895589-5895608 None:intergenic 40.0%
AATCAAGCTGTCAATTCCGT+TGG + chr5_3:5895599-5895618 Msa0794100:CDS 40.0%
GCTGCCAAAATAAGAACCAA+CGG - chr5_3:5895618-5895637 None:intergenic 40.0%
TCAGTATGTTCAGAGAACTG+AGG - chr5_3:5895649-5895668 None:intergenic 40.0%
ATCAAAGTCCCTTGTGTTGA+AGG + chr5_3:5895749-5895768 Msa0794100:three_prime_UTR 40.0%
TCAAAGTCCCTTGTGTTGAA+GGG + chr5_3:5895750-5895769 Msa0794100:three_prime_UTR 40.0%
! AGGCTTTTGTAGAGTAAGGA+CGG - chr5_3:5894683-5894702 None:intergenic 40.0%
! GTCTAGGCTTTTGTAGAGTA+AGG - chr5_3:5894687-5894706 None:intergenic 40.0%
! TGTGAAGACAATGGTGGTTT+TGG - chr5_3:5894719-5894738 None:intergenic 40.0%
TTACTCTGTGAAGACAATGG+TGG - chr5_3:5894725-5894744 None:intergenic 40.0%
CCCAATATGTTAGTACCTGA+TGG - chr5_3:5895439-5895458 None:intergenic 40.0%
AACAAGGCCAAGGTTCAAAT+TGG - chr5_3:5895496-5895515 None:intergenic 40.0%
CAGCTTGATTGAATTTCCAC+TGG - chr5_3:5895589-5895608 None:intergenic 40.0%
AATCAAGCTGTCAATTCCGT+TGG + chr5_3:5895599-5895618 Msa0794100:CDS 40.0%
GCTGCCAAAATAAGAACCAA+CGG - chr5_3:5895618-5895637 None:intergenic 40.0%
TCAGTATGTTCAGAGAACTG+AGG - chr5_3:5895649-5895668 None:intergenic 40.0%
ATCAAAGTCCCTTGTGTTGA+AGG + chr5_3:5895749-5895768 Msa0794100:three_prime_UTR 40.0%
TCAAAGTCCCTTGTGTTGAA+GGG + chr5_3:5895750-5895769 Msa0794100:three_prime_UTR 40.0%
TTTGAGCAGCATCCTGAAGA+CGG - chr5_3:5894963-5894982 None:intergenic 45.0%
TGGTTGTGAATTCACCACAC+TGG - chr5_3:5894991-5895010 None:intergenic 45.0%
ACAACCACTATGCCTATGTC+AGG + chr5_3:5895004-5895023 Msa0794100:CDS 45.0%
AGAACCTGACATAGGCATAG+TGG - chr5_3:5895011-5895030 None:intergenic 45.0%
!! TTTTACACTGACTGGTGGGT+GGG - chr5_3:5895115-5895134 None:intergenic 45.0%
TCTCCAAACTCAGTTCCATC+AGG + chr5_3:5895421-5895440 Msa0794100:CDS 45.0%
GTACCTGATGGAACTGAGTT+TGG - chr5_3:5895427-5895446 None:intergenic 45.0%
!! TGAGGGAGTGGATTTTGATC+CGG - chr5_3:5895550-5895569 None:intergenic 45.0%
TCAAAATCCACTCCCTCAAC+CGG + chr5_3:5895552-5895571 Msa0794100:CDS 45.0%
TGTTCAGAGAACTGAGGCAT+AGG - chr5_3:5895643-5895662 None:intergenic 45.0%
GACTGAACCCTTCAACACAA+GGG - chr5_3:5895760-5895779 None:intergenic 45.0%
AGACTGAACCCTTCAACACA+AGG - chr5_3:5895761-5895780 None:intergenic 45.0%
TTTGAGCAGCATCCTGAAGA+CGG - chr5_3:5894963-5894982 None:intergenic 45.0%
TGGTTGTGAATTCACCACAC+TGG - chr5_3:5894991-5895010 None:intergenic 45.0%
ACAACCACTATGCCTATGTC+AGG + chr5_3:5895004-5895023 Msa0794100:CDS 45.0%
AGAACCTGACATAGGCATAG+TGG - chr5_3:5895011-5895030 None:intergenic 45.0%
!! TTTTACACTGACTGGTGGGT+GGG - chr5_3:5895115-5895134 None:intergenic 45.0%
TCTCCAAACTCAGTTCCATC+AGG + chr5_3:5895421-5895440 Msa0794100:CDS 45.0%
GTACCTGATGGAACTGAGTT+TGG - chr5_3:5895427-5895446 None:intergenic 45.0%
!! TGAGGGAGTGGATTTTGATC+CGG - chr5_3:5895550-5895569 None:intergenic 45.0%
TCAAAATCCACTCCCTCAAC+CGG + chr5_3:5895552-5895571 Msa0794100:CDS 45.0%
TGTTCAGAGAACTGAGGCAT+AGG - chr5_3:5895643-5895662 None:intergenic 45.0%
GACTGAACCCTTCAACACAA+GGG - chr5_3:5895760-5895779 None:intergenic 45.0%
AGACTGAACCCTTCAACACA+AGG - chr5_3:5895761-5895780 None:intergenic 45.0%
GTAATCGCAATGTTGTGCGC+TGG + chr5_3:5894855-5894874 Msa0794100:CDS 50.0%
AATTCCTCAACCCCGTCTTC+AGG + chr5_3:5894948-5894967 Msa0794100:CDS 50.0%
TTGAGCAGCATCCTGAAGAC+GGG - chr5_3:5894962-5894981 None:intergenic 50.0%
GTGAATTCACCACACTGGCA+AGG - chr5_3:5894986-5895005 None:intergenic 50.0%
TGCCTATGTCAGGTTCTCAG+CGG + chr5_3:5895014-5895033 Msa0794100:CDS 50.0%
! TTTACACTGACTGGTGGGTG+GGG - chr5_3:5895114-5895133 None:intergenic 50.0%
!! GTTTTACACTGACTGGTGGG+TGG - chr5_3:5895116-5895135 None:intergenic 50.0%
! GATGATCCATCACCGGTTGA+GGG - chr5_3:5895567-5895586 None:intergenic 50.0%
TCCACTGGATGATCCATCAC+CGG - chr5_3:5895574-5895593 None:intergenic 50.0%
GTAATCGCAATGTTGTGCGC+TGG + chr5_3:5894855-5894874 Msa0794100:CDS 50.0%
AATTCCTCAACCCCGTCTTC+AGG + chr5_3:5894948-5894967 Msa0794100:CDS 50.0%
TTGAGCAGCATCCTGAAGAC+GGG - chr5_3:5894962-5894981 None:intergenic 50.0%
GTGAATTCACCACACTGGCA+AGG - chr5_3:5894986-5895005 None:intergenic 50.0%
TGCCTATGTCAGGTTCTCAG+CGG + chr5_3:5895014-5895033 Msa0794100:CDS 50.0%
! TTTACACTGACTGGTGGGTG+GGG - chr5_3:5895114-5895133 None:intergenic 50.0%
!! GTTTTACACTGACTGGTGGG+TGG - chr5_3:5895116-5895135 None:intergenic 50.0%
! GATGATCCATCACCGGTTGA+GGG - chr5_3:5895567-5895586 None:intergenic 50.0%
TCCACTGGATGATCCATCAC+CGG - chr5_3:5895574-5895593 None:intergenic 50.0%
TGAGCAGCATCCTGAAGACG+GGG - chr5_3:5894961-5894980 None:intergenic 55.0%
CTGCTCAAACCTTGCCAGTG+TGG + chr5_3:5894974-5894993 Msa0794100:CDS 55.0%
GCCTATGTCAGGTTCTCAGC+GGG + chr5_3:5895015-5895034 Msa0794100:CDS 55.0%
CCTATGTCAGGTTCTCAGCG+GGG + chr5_3:5895016-5895035 Msa0794100:CDS 55.0%
CTATGTCAGGTTCTCAGCGG+GGG + chr5_3:5895017-5895036 Msa0794100:CDS 55.0%
GTTTGCACCTTGCAAGCACC+AGG - chr5_3:5895092-5895111 None:intergenic 55.0%
TTCCTGCTGGTGAGTCTGCT+GGG - chr5_3:5895390-5895409 None:intergenic 55.0%
GACTCTGCTTCTGTTCCTGC+TGG - chr5_3:5895403-5895422 None:intergenic 55.0%
! GGATGATCCATCACCGGTTG+AGG - chr5_3:5895568-5895587 None:intergenic 55.0%
!! ACCGGTGATGGATCATCCAG+TGG + chr5_3:5895570-5895589 Msa0794100:CDS 55.0%
TGAGCAGCATCCTGAAGACG+GGG - chr5_3:5894961-5894980 None:intergenic 55.0%
CTGCTCAAACCTTGCCAGTG+TGG + chr5_3:5894974-5894993 Msa0794100:CDS 55.0%
GCCTATGTCAGGTTCTCAGC+GGG + chr5_3:5895015-5895034 Msa0794100:CDS 55.0%
CCTATGTCAGGTTCTCAGCG+GGG + chr5_3:5895016-5895035 Msa0794100:CDS 55.0%
CTATGTCAGGTTCTCAGCGG+GGG + chr5_3:5895017-5895036 Msa0794100:CDS 55.0%
GTTTGCACCTTGCAAGCACC+AGG - chr5_3:5895092-5895111 None:intergenic 55.0%
TTCCTGCTGGTGAGTCTGCT+GGG - chr5_3:5895390-5895409 None:intergenic 55.0%
GACTCTGCTTCTGTTCCTGC+TGG - chr5_3:5895403-5895422 None:intergenic 55.0%
! GGATGATCCATCACCGGTTG+AGG - chr5_3:5895568-5895587 None:intergenic 55.0%
!! ACCGGTGATGGATCATCCAG+TGG + chr5_3:5895570-5895589 Msa0794100:CDS 55.0%
GCATCCTGAAGACGGGGTTG+AGG - chr5_3:5894955-5894974 None:intergenic 60.0%
CCCCGCTGAGAACCTGACAT+AGG - chr5_3:5895019-5895038 None:intergenic 60.0%
!! ACTCAGGCTCTAGCCTTGCC+TGG + chr5_3:5895071-5895090 Msa0794100:CDS 60.0%
AGCCTTGCCTGGTGCTTGCA+AGG + chr5_3:5895082-5895101 Msa0794100:CDS 60.0%
CACCTTGCAAGCACCAGGCA+AGG - chr5_3:5895087-5895106 None:intergenic 60.0%
TCCTGCTGGTGAGTCTGCTG+GGG - chr5_3:5895389-5895408 None:intergenic 60.0%
GTTCCTGCTGGTGAGTCTGC+TGG - chr5_3:5895391-5895410 None:intergenic 60.0%
TCCACTCCCTCAACCGGTGA+TGG + chr5_3:5895558-5895577 Msa0794100:CDS 60.0%
! TCCATCACCGGTTGAGGGAG+TGG - chr5_3:5895562-5895581 None:intergenic 60.0%
GCATCCTGAAGACGGGGTTG+AGG - chr5_3:5894955-5894974 None:intergenic 60.0%
CCCCGCTGAGAACCTGACAT+AGG - chr5_3:5895019-5895038 None:intergenic 60.0%
!! ACTCAGGCTCTAGCCTTGCC+TGG + chr5_3:5895071-5895090 Msa0794100:CDS 60.0%
AGCCTTGCCTGGTGCTTGCA+AGG + chr5_3:5895082-5895101 Msa0794100:CDS 60.0%
CACCTTGCAAGCACCAGGCA+AGG - chr5_3:5895087-5895106 None:intergenic 60.0%
TCCTGCTGGTGAGTCTGCTG+GGG - chr5_3:5895389-5895408 None:intergenic 60.0%
GTTCCTGCTGGTGAGTCTGC+TGG - chr5_3:5895391-5895410 None:intergenic 60.0%
TCCACTCCCTCAACCGGTGA+TGG + chr5_3:5895558-5895577 Msa0794100:CDS 60.0%
! TCCATCACCGGTTGAGGGAG+TGG - chr5_3:5895562-5895581 None:intergenic 60.0%
TCCCCAGCAGACTCACCAGC+AGG + chr5_3:5895385-5895404 Msa0794100:CDS 65.0%
TCCCCAGCAGACTCACCAGC+AGG + chr5_3:5895385-5895404 Msa0794100:CDS 65.0%
! AGCGGGGGTGCATCGTCGCT+GGG + chr5_3:5895032-5895051 Msa0794100:CDS 70.0%
! AGCGGGGGTGCATCGTCGCT+GGG + chr5_3:5895032-5895051 Msa0794100:CDS 70.0%
! CAGCGGGGGTGCATCGTCGC+TGG + chr5_3:5895031-5895050 Msa0794100:CDS 75.0%
! CAGCGGGGGTGCATCGTCGC+TGG + chr5_3:5895031-5895050 Msa0794100:CDS 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 5894633 5895909 5894633 ID=Msa0794100;Name=Msa0794100
chr5_3 mRNA 5894633 5895909 5894633 ID=Msa0794100-mRNA-1;Parent=Msa0794100;Name=Msa0794100-mRNA-1;_AED=0.02;_eAED=0.02;_QI=183|1|1|1|1|1|3|250|168
chr5_3 exon 5894633 5895143 5894633 ID=Msa0794100-mRNA-1:exon:2364;Parent=Msa0794100-mRNA-1
chr5_3 exon 5895380 5895442 5895380 ID=Msa0794100-mRNA-1:exon:2365;Parent=Msa0794100-mRNA-1
chr5_3 exon 5895544 5895909 5895544 ID=Msa0794100-mRNA-1:exon:2366;Parent=Msa0794100-mRNA-1
chr5_3 five_prime_UTR 5894633 5894815 5894633 ID=Msa0794100-mRNA-1:five_prime_utr;Parent=Msa0794100-mRNA-1
chr5_3 CDS 5894816 5895143 5894816 ID=Msa0794100-mRNA-1:cds;Parent=Msa0794100-mRNA-1
chr5_3 CDS 5895380 5895442 5895380 ID=Msa0794100-mRNA-1:cds;Parent=Msa0794100-mRNA-1
chr5_3 CDS 5895544 5895659 5895544 ID=Msa0794100-mRNA-1:cds;Parent=Msa0794100-mRNA-1
chr5_3 three_prime_UTR 5895660 5895909 5895660 ID=Msa0794100-mRNA-1:three_prime_utr;Parent=Msa0794100-mRNA-1
Gene Sequence

>Msa0794100

ATGGCACACAGCAAAATGAATATGAGTTTGGTTTTGGTTGTAATCGCAATGTTGTGCGCTGGAGCTGCTGCGCAATCGAGTTGTACAAATGTCTTGGTCAGCCTATCACCTTGTCTTAACTATATCACAGGGAATTCCTCAACCCCGTCTTCAGGATGCTGCTCAAACCTTGCCAGTGTGGTGAATTCACAACCACTATGCCTATGTCAGGTTCTCAGCGGGGGTGCATCGTCGCTGGGAATCAGCATCAATCAAACTCAGGCTCTAGCCTTGCCTGGTGCTTGCAAGGTGCAAACCCCACCCACCAGTCAGTGTAAAACTAATAATGCTGCTTCCCCAGCAGACTCACCAGCAGGAACAGAAGCAGAGTCTCCAAACTCAGTTCCATCAGGAACCGGATCAAAATCCACTCCCTCAACCGGTGATGGATCATCCAGTGGAAATTCAATCAAGCTGTCAATTCCGTTGGTTCTTATTTTGGCAGCAGCCTATGCCTCAGTTCTCTGA

Protein sequence

>Msa0794100

MAHSKMNMSLVLVVIAMLCAGAAAQSSCTNVLVSLSPCLNYITGNSSTPSSGCCSNLASVVNSQPLCLCQVLSGGASSLGISINQTQALALPGACKVQTPPTSQCKTNNAASPADSPAGTEAESPNSVPSGTGSKSTPSTGDGSSSGNSIKLSIPLVLILAAAYASVL*