AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0354550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0354550 MtrunA17_Chr3g0090131 95.122 492 18 1 1 486 1 492 0.0 966
Msa0354550 MtrunA17_Chr3g0090111 85.569 492 62 3 1 486 1 489 0.0 874
Msa0354550 MtrunA17_Chr4g0043091 51.782 477 210 5 20 477 27 502 1.58e-176 505
Msa0354550 MtrunA17_Chr4g0042171 49.478 479 221 6 19 477 22 499 4.75e-166 479
Msa0354550 MtrunA17_Chr6g0482131 50.313 479 213 7 21 477 36 511 3.54e-164 474
Msa0354550 MtrunA17_Chr2g0329191 48.326 478 227 6 19 477 32 508 4.94e-159 461
Msa0354550 MtrunA17_Chr6g0482951 49.068 483 204 8 21 476 43 510 2.53e-158 459
Msa0354550 MtrunA17_Chr6g0482941 49.275 483 203 8 21 476 43 510 2.76e-158 459
Msa0354550 MtrunA17_Chr4g0033271 47.479 476 231 5 21 477 35 510 3.88e-157 456
Msa0354550 MtrunA17_Chr2g0329201 48.117 478 229 5 19 477 29 506 3.19e-156 453
Msa0354550 MtrunA17_Chr4g0010501 47.205 483 218 8 20 477 23 493 8.52e-156 452
Msa0354550 MtrunA17_Chr6g0482081 48.548 482 224 7 18 477 33 512 2.82e-155 451
Msa0354550 MtrunA17_Chr6g0482071 48.319 476 227 5 21 477 37 512 2.98e-155 451
Msa0354550 MtrunA17_Chr3g0087261 45.756 483 243 6 14 479 30 510 6.02e-155 450
Msa0354550 MtrunA17_Chr4g0033321 48.755 482 227 6 21 483 33 513 9.52e-155 450
Msa0354550 MtrunA17_Chr4g0033331 47.390 479 227 7 20 476 38 513 8.20e-154 448
Msa0354550 MtrunA17_Chr4g0033311 47.908 478 226 8 21 477 39 514 2.13e-153 447
Msa0354550 MtrunA17_Chr4g0033201 46.362 481 233 7 19 477 34 511 3.29e-153 446
Msa0354550 MtrunA17_Chr3g0087271 45.474 475 240 6 22 479 39 511 7.69e-152 442
Msa0354550 MtrunA17_Chr4g0033401 48.319 476 227 5 20 476 33 508 9.67e-152 442
Msa0354550 MtrunA17_Chr4g0033261 47.246 472 220 7 18 477 38 492 4.37e-150 437
Msa0354550 MtrunA17_Chr4g0033341 47.046 474 234 6 21 477 69 542 5.36e-150 439
Msa0354550 MtrunA17_Chr3g0088441 46.025 478 237 7 20 477 37 513 3.23e-148 434
Msa0354550 MtrunA17_Chr2g0317841 45.585 487 243 6 19 486 30 513 1.28e-147 432
Msa0354550 MtrunA17_Chr4g0033191 45.267 486 241 7 20 483 42 524 1.75e-145 427
Msa0354550 MtrunA17_Chr4g0033231 46.398 472 224 7 18 477 38 492 6.50e-145 424
Msa0354550 MtrunA17_Chr2g0317821 45.585 487 243 6 19 486 30 513 1.41e-143 422
Msa0354550 MtrunA17_Chr2g0329321 44.979 478 218 7 19 477 36 487 1.06e-141 416
Msa0354550 MtrunA17_Chr2g0288021 44.016 493 241 8 18 484 32 515 6.11e-139 410
Msa0354550 MtrunA17_Chr5g0430451 45.996 487 207 7 20 477 38 497 1.06e-137 406
Msa0354550 MtrunA17_Chr4g0074561 44.468 479 230 7 26 476 40 510 1.66e-137 406
Msa0354550 MtrunA17_Chr2g0288071 45.929 479 225 7 24 476 70 540 3.59e-135 401
Msa0354550 MtrunA17_Chr4g0074551 44.835 484 234 7 19 477 48 523 5.99e-135 401
Msa0354550 MtrunA17_Chr4g0006111 43.182 484 238 8 18 481 62 528 2.72e-134 398
Msa0354550 MtrunA17_Chr4g0006131 43.067 476 237 8 20 477 41 500 3.03e-130 387
Msa0354550 MtrunA17_Chr4g0006971 41.895 475 247 8 22 478 28 491 4.15e-129 384
Msa0354550 MtrunA17_Chr7g0242681 41.509 477 245 9 21 477 38 500 1.80e-126 378
Msa0354550 MtrunA17_Chr5g0428831 41.929 477 241 11 22 477 28 489 1.42e-123 370
Msa0354550 MtrunA17_Chr7g0242691 40.632 475 253 7 21 477 31 494 5.55e-123 369
Msa0354550 MtrunA17_Chr1g0195611 40.664 482 245 12 19 477 25 488 5.97e-123 369
Msa0354550 MtrunA17_Chr7g0234091 40.725 469 251 9 22 476 76 531 2.19e-108 332
Msa0354550 MtrunA17_Chr5g0418871 50.301 332 146 5 42 355 4 334 1.31e-107 323
Msa0354550 MtrunA17_Chr7g0234111 39.659 469 256 9 22 476 76 531 2.11e-105 324
Msa0354550 MtrunA17_Chr7g0234131 38.380 469 263 8 22 476 76 532 8.94e-102 315
Msa0354550 MtrunA17_Chr1g0195641 42.078 385 195 9 23 388 29 404 8.70e-99 303
Msa0354550 MtrunA17_Chr2g0301231 41.542 402 200 7 94 477 7 391 1.36e-98 302
Msa0354550 MtrunA17_Chr3g0087201 44.578 332 156 7 165 476 19 342 9.96e-91 280
Msa0354550 MtrunA17_Chr7g0230651 36.702 376 216 7 60 423 11 376 2.27e-82 260
Msa0354550 MtrunA17_Chr3g0087191 57.047 149 62 2 16 162 17 165 2.52e-55 182
Msa0354550 MtrunA17_Chr7g0227561 36.981 265 132 4 23 277 48 287 1.61e-54 184
Msa0354550 MtrunA17_Chr7g0236731 40.000 220 121 3 114 322 34 253 7.77e-46 161
Msa0354550 MtrunA17_Chr4g0068871 26.420 405 237 13 84 479 183 535 5.72e-26 111
Msa0354550 MtrunA17_Chr5g0418861 46.667 90 47 1 388 476 1 90 1.53e-24 97.4
Msa0354550 MtrunA17_Chr8g0352881 56.364 55 24 0 28 82 5 59 2.33e-14 70.9
Msa0354550 MtrunA17_Chr8g0352881 35.802 81 52 0 236 316 64 144 3.17e-13 67.4
Msa0354550 MtrunA17_Chr7g0227591 43.103 58 33 0 423 480 12 69 6.24e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0354550 AT5G36890.1 68.856 472 139 3 23 486 18 489 0.0 694
Msa0354550 AT5G36890.2 69.149 470 136 4 23 483 18 487 0.0 689
Msa0354550 AT1G26560.1 49.895 477 218 7 20 476 31 506 1.01e-168 486
Msa0354550 AT3G18080.1 49.370 476 216 8 21 477 39 508 8.06e-161 466
Msa0354550 AT5G54570.1 48.017 479 227 7 19 476 28 505 1.04e-159 464
Msa0354550 AT3G18070.3 48.101 474 217 8 21 477 30 491 3.01e-157 456
Msa0354550 AT3G18070.1 48.312 474 222 8 21 477 30 497 2.31e-156 454
Msa0354550 AT3G60140.1 46.804 485 225 9 20 477 25 503 7.04e-153 447
Msa0354550 AT2G44480.1 45.738 481 239 8 21 481 35 513 4.04e-151 441
Msa0354550 AT2G44480.3 45.738 481 239 8 21 481 66 544 1.24e-150 441
Msa0354550 AT5G24550.1 47.083 480 230 8 21 477 32 510 6.24e-149 436
Msa0354550 AT2G44450.1 46.888 482 230 8 20 481 30 505 1.07e-146 429
Msa0354550 AT5G44640.1 47.083 480 227 9 20 478 30 503 9.99e-146 427
Msa0354550 AT5G42260.1 47.890 474 220 9 20 472 30 497 6.75e-144 422
Msa0354550 AT5G24540.1 47.808 479 228 8 21 477 32 510 4.43e-141 416
Msa0354550 AT2G44470.3 44.235 477 245 7 21 476 29 505 8.62e-141 417
Msa0354550 AT3G60130.1 44.491 481 240 9 18 477 27 501 7.60e-139 410
Msa0354550 AT1G61820.1 44.877 488 240 8 18 481 27 509 1.18e-138 409
Msa0354550 AT2G25630.1 45.397 478 217 10 20 476 29 483 2.63e-135 400
Msa0354550 AT1G02850.2 43.038 474 238 9 22 477 27 486 3.07e-134 397
Msa0354550 AT5G54570.3 45.540 426 211 6 18 423 27 451 2.01e-133 394
Msa0354550 AT2G44460.1 45.322 481 242 8 23 483 31 510 5.85e-131 392
Msa0354550 AT1G02850.5 41.046 497 238 9 22 477 27 509 1.54e-130 389
Msa0354550 AT1G61810.1 43.271 483 253 7 21 483 33 514 2.73e-130 388
Msa0354550 AT3G60120.1 42.191 493 255 10 9 477 4 490 1.06e-129 387
Msa0354550 AT4G21760.2 44.350 469 237 6 26 476 59 521 1.52e-129 387
Msa0354550 AT1G51470.1 42.276 492 259 10 2 476 26 509 6.24e-129 384
Msa0354550 AT1G02850.4 40.964 498 238 10 22 477 27 510 9.39e-129 384
Msa0354550 AT5G54570.2 46.552 406 196 6 91 476 4 408 1.74e-128 380
Msa0354550 AT1G47600.1 42.084 499 250 11 2 476 26 509 2.90e-128 382
Msa0354550 AT1G47600.2 41.884 499 250 12 2 476 26 508 5.81e-128 382
Msa0354550 AT4G27830.1 42.050 478 245 9 18 476 20 484 1.40e-127 380
Msa0354550 AT2G44490.1 41.322 484 249 11 23 477 16 493 1.52e-126 380
Msa0354550 AT1G02850.1 41.880 468 225 9 22 477 27 459 3.01e-126 376
Msa0354550 AT2G32860.2 42.380 479 254 8 20 476 93 571 5.67e-126 380
Msa0354550 AT2G44480.2 43.932 412 212 6 88 481 1 411 1.01e-125 372
Msa0354550 AT2G32860.1 42.531 482 248 10 20 476 93 570 6.94e-125 377
Msa0354550 AT1G61810.3 44.079 456 235 6 21 456 33 488 1.35e-124 374
Msa0354550 AT4G21760.1 43.710 469 230 7 26 476 59 511 1.38e-124 374
Msa0354550 AT1G66280.1 42.443 483 253 8 20 480 35 514 2.26e-124 373
Msa0354550 AT1G75940.1 43.033 488 245 10 22 480 38 521 2.36e-124 373
Msa0354550 AT4G27820.1 41.286 482 241 10 18 476 20 482 3.19e-122 367
Msa0354550 AT1G66270.1 42.650 483 252 9 20 480 35 514 3.48e-122 367
Msa0354550 AT3G21370.1 41.141 491 252 11 19 479 31 514 5.76e-122 367
Msa0354550 AT3G62750.1 41.667 468 248 10 19 476 21 473 8.49e-121 363
Msa0354550 AT3G62750.2 41.667 468 248 10 19 476 47 499 2.52e-120 362
Msa0354550 AT4G22100.1 40.041 482 258 10 23 486 24 492 1.70e-119 360
Msa0354550 AT5G28510.1 40.816 490 259 9 19 480 37 523 1.90e-119 360
Msa0354550 AT1G45191.4 40.408 490 253 11 7 477 15 484 4.05e-119 359
Msa0354550 AT3G09260.1 41.237 485 257 9 20 480 34 514 6.28e-119 359
Msa0354550 AT1G66270.2 42.236 483 252 10 20 480 35 512 1.12e-118 358
Msa0354550 AT5G25980.2 40.041 487 267 9 13 478 42 524 3.80e-118 358
Msa0354550 AT1G52400.3 40.369 488 254 10 19 477 37 516 6.36e-116 351
Msa0354550 AT1G52400.1 40.369 488 254 10 19 477 37 516 6.36e-116 351
Msa0354550 AT1G45191.2 38.866 494 261 10 7 477 15 490 2.34e-115 349
Msa0354550 AT1G60090.2 38.716 483 263 9 13 477 16 483 2.48e-115 349
Msa0354550 AT3G62740.1 39.958 473 254 10 19 476 21 478 2.49e-115 349
Msa0354550 AT1G45191.6 39.279 499 257 11 7 477 15 495 1.30e-114 348
Msa0354550 AT2G44470.1 42.180 422 224 6 21 422 29 450 4.30e-114 344
Msa0354550 AT1G45191.1 38.856 507 260 11 7 477 15 507 1.47e-113 345
Msa0354550 AT3G60140.2 45.269 391 188 7 20 387 25 412 1.78e-113 343
Msa0354550 AT3G03640.1 40.000 480 261 11 23 477 36 513 2.09e-113 345
Msa0354550 AT1G60090.1 38.241 489 266 9 12 477 15 490 1.50e-112 342
Msa0354550 AT5G24540.2 45.154 423 211 7 21 422 32 454 3.93e-112 339
Msa0354550 AT3G60130.2 42.410 415 215 7 82 477 40 449 2.81e-111 337
Msa0354550 AT5G26000.1 39.526 506 264 14 2 476 17 511 8.10e-110 336
Msa0354550 AT3G60130.3 41.687 415 207 9 82 477 40 438 6.32e-106 323
Msa0354550 AT3G18070.4 48.137 322 149 4 21 327 30 348 7.12e-105 318
Msa0354550 AT1G61810.5 41.748 412 220 6 91 483 4 414 8.37e-105 319
Msa0354550 AT1G02850.3 40.887 406 192 7 22 387 27 424 1.13e-103 317
Msa0354550 AT2G44470.2 47.352 321 151 4 21 323 29 349 1.01e-101 310
Msa0354550 AT3G62750.4 40.865 416 222 9 19 425 47 447 1.81e-101 312
Msa0354550 AT4G27830.2 40.686 408 211 8 88 476 1 396 2.08e-100 308
Msa0354550 AT5G25980.3 39.070 430 239 7 13 423 42 467 4.95e-100 308
Msa0354550 AT5G25980.1 39.070 430 239 7 13 423 42 467 4.95e-100 308
Msa0354550 AT1G61810.4 43.152 387 200 6 21 387 33 419 4.32e-99 305
Msa0354550 AT3G62740.2 40.241 415 219 9 22 422 24 423 1.91e-98 303
Msa0354550 AT3G18070.2 47.516 322 149 6 173 477 102 420 6.40e-96 296
Msa0354550 AT3G18070.2 44.737 76 42 0 21 96 30 105 5.47e-16 80.5
Msa0354550 AT4G27820.2 39.563 412 211 9 88 476 1 397 4.57e-95 294
Msa0354550 AT4G27820.3 39.563 412 211 9 88 476 1 397 4.57e-95 294
Msa0354550 AT2G44480.4 47.756 312 143 6 21 314 66 375 5.07e-95 293
Msa0354550 AT1G61820.3 42.473 372 186 7 133 481 4 370 1.48e-93 289
Msa0354550 AT5G26000.2 38.581 451 237 12 2 423 17 456 1.43e-92 289
Msa0354550 AT3G62750.6 39.599 399 220 9 88 476 1 388 1.52e-92 287
Msa0354550 AT3G62750.5 39.599 399 220 9 88 476 1 388 1.52e-92 287
Msa0354550 AT1G45191.5 43.675 332 167 4 7 323 15 341 6.94e-92 286
Msa0354550 AT1G45191.3 43.675 332 167 4 7 323 15 341 1.04e-91 285
Msa0354550 AT2G44450.2 41.504 359 188 5 140 481 1 354 5.57e-91 281
Msa0354550 AT1G52400.2 37.963 432 232 9 19 422 37 460 3.37e-90 283
Msa0354550 AT3G18070.7 46.624 311 146 6 184 477 1 308 1.32e-89 276
Msa0354550 AT3G62750.7 45.455 308 156 4 22 322 24 326 2.45e-89 278
Msa0354550 AT3G62750.8 45.455 308 156 4 22 322 24 326 2.45e-89 278
Msa0354550 AT3G62750.3 45.016 311 159 4 19 322 47 352 3.72e-88 277
Msa0354550 AT1G60270.1 42.025 326 170 4 12 322 15 336 2.85e-87 273
Msa0354550 AT2G44460.2 43.836 365 185 7 138 483 1 364 3.05e-86 272
Msa0354550 AT2G44480.5 41.176 306 162 5 193 481 3 307 1.64e-81 255
Msa0354550 AT5G48375.1 35.033 451 226 11 2 441 17 411 2.53e-78 251
Msa0354550 AT1G61810.2 46.691 272 129 3 21 276 33 304 6.36e-76 241
Msa0354550 AT1G51490.1 42.122 311 153 10 29 322 28 328 3.99e-68 224
Msa0354550 AT1G60270.2 41.633 245 127 3 93 322 6 249 4.95e-60 199
Msa0354550 AT3G18070.5 43.348 233 115 4 173 388 102 334 2.74e-57 194
Msa0354550 AT3G18070.5 44.737 76 42 0 21 96 30 105 2.76e-16 80.5
Msa0354550 AT3G18070.6 42.857 224 107 5 184 388 1 222 4.39e-51 174
Msa0354550 AT5G16580.1 33.333 288 160 8 164 433 26 299 7.14e-44 157
Msa0354550 AT3G06510.2 26.353 425 248 13 83 479 159 546 1.59e-26 113
Msa0354550 AT3G06510.1 26.699 412 229 14 83 479 159 512 3.19e-26 112

Find 116 sgRNAs with CRISPR-Local

Find 431 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATCCTCCTCAGAGAATT+TGG 0.141247 3_1:-26143410 None:intergenic
ATCAATGCTCTTCTTGAAAA+AGG 0.186679 3_1:+26141983 Msa0354550:CDS
CTTGTACTTGCTTCGGTAAA+TGG 0.219549 3_1:-26142701 None:intergenic
GAAGAATTTCTGAGAGAAAA+TGG 0.220328 3_1:+26138685 Msa0354550:CDS
GATACTTGCTTTGCAAGTTT+TGG 0.249512 3_1:+26142520 Msa0354550:CDS
ACCTCGTTGTATAGTGATTT+AGG 0.261744 3_1:-26143465 None:intergenic
TTGAATTCTTTGGACTTCAT+TGG 0.280186 3_1:+26143442 Msa0354550:CDS
TTCTTGCATCCACTATATTA+TGG 0.285971 3_1:+26143343 Msa0354550:CDS
AGTCGCCACTTCTGCTTATC+AGG 0.289635 3_1:+26138771 Msa0354550:CDS
TCTTCAATCTTATCAGAGTT+TGG 0.311629 3_1:-26142980 None:intergenic
ACCCAAAGTCTTCTGCATAT+TGG 0.333496 3_1:+26145525 Msa0354550:CDS
GGCATATGAAATATAAGATT+TGG 0.334334 3_1:-26145731 None:intergenic
GTGGCTATATGTTGTTCCTT+GGG 0.339471 3_1:+26143788 Msa0354550:CDS
GTGGTAGAGGTCCTAGTATA+TGG 0.341211 3_1:+26140222 Msa0354550:CDS
TGATGATGTGCTGCTAAGTA+TGG 0.341542 3_1:-26142652 None:intergenic
ACCAATATGCAGAAGACTTT+GGG 0.355117 3_1:-26145526 None:intergenic
TCATCTAGCATCTCATTTAG+TGG 0.371886 3_1:-26144597 None:intergenic
TGCTTATTTCTATAGATAGA+AGG 0.374326 3_1:+26140185 Msa0354550:intron
TTCCCTTCTGACTTCATCTT+CGG 0.378844 3_1:+26138748 Msa0354550:CDS
AGTGGCTATATGTTGTTCCT+TGG 0.380075 3_1:+26143787 Msa0354550:CDS
CCATTCTCGGTGACATATAT+CGG 0.385270 3_1:-26143855 None:intergenic
TGATCATTATCATCGTTATA+AGG 0.400828 3_1:+26140374 Msa0354550:CDS
TTATCCTCCTCAGAGAATTT+GGG 0.404590 3_1:-26143409 None:intergenic
ATGTTGTTCCTTGGGGTCTT+CGG 0.421588 3_1:+26143796 Msa0354550:CDS
AGAAAGTCACATACCATTCT+CGG 0.427765 3_1:-26143868 None:intergenic
ACCCACCAACTGCGGTTTGA+AGG 0.428874 3_1:-26142579 None:intergenic
GGCTGGTTGTAGACTCTGAA+TGG 0.429555 3_1:+26142951 Msa0354550:CDS
CTTGTCATAATGACATTCTT+CGG 0.431032 3_1:-26143512 None:intergenic
CCGATATATGTCACCGAGAA+TGG 0.434496 3_1:+26143855 Msa0354550:CDS
TATTGATCTTATAGCCAAGT+TGG 0.446830 3_1:+26140778 Msa0354550:CDS
AGAGTAGCTGTGAACATTGA+AGG 0.451848 3_1:+26138641 Msa0354550:five_prime_UTR
AACCAATATGCAGAAGACTT+TGG 0.453110 3_1:-26145527 None:intergenic
GTTTGACCTTGTACTTGCTT+CGG 0.453872 3_1:-26142708 None:intergenic
GCACAACAGCTGGACAGAAT+TGG 0.456329 3_1:+26143535 Msa0354550:CDS
GCTAGCAAGGAGGGTGGTAG+AGG 0.457690 3_1:+26140209 Msa0354550:CDS
AGTCGTTCACGCATAACTTC+AGG 0.457789 3_1:-26143373 None:intergenic
ATTGATCTTATAGCCAAGTT+GGG 0.461829 3_1:+26140779 Msa0354550:CDS
CCCCTTCAAACCGCAGTTGG+TGG 0.465082 3_1:+26142577 Msa0354550:CDS
ATAGACCAATCCGAAGCGTT+TGG 0.469827 3_1:-26145474 None:intergenic
AGCAGCACATCATCAAATCT+TGG 0.471284 3_1:+26142660 Msa0354550:CDS
AGCAAGGGGACAAGTGGGGC+TGG 0.472036 3_1:+26142934 Msa0354550:intron
TGGGAAGGCGGGGAGCTCAT+TGG 0.475634 3_1:+26143644 Msa0354550:CDS
ACTGCATCTTGATGAGTCAA+TGG 0.476677 3_1:+26142123 Msa0354550:CDS
TTTCGCGGTTTCTTAAAGAT+GGG 0.480453 3_1:+26145549 Msa0354550:CDS
TTATGACAAGGCACAACAGC+TGG 0.483666 3_1:+26143525 Msa0354550:CDS
CAAGGTTATACCAAACGCTT+CGG 0.487707 3_1:+26145464 Msa0354550:CDS
GCATAGGCATCCCATATACT+AGG 0.491716 3_1:-26140233 None:intergenic
TTTATGGGTGTAGATGGCTT+AGG 0.494310 3_1:+26141917 Msa0354550:intron
CCCACCAACTGCGGTTTGAA+GGG 0.498031 3_1:-26142578 None:intergenic
ACCAGCCAAGACGAAAATCT+AGG 0.501744 3_1:-26143024 None:intergenic
ATCAAGCAATTGAGCTCAAG+TGG 0.503129 3_1:+26145807 Msa0354550:three_prime_UTR
TAAAGATGGGGCAAACAAGA+AGG 0.505631 3_1:+26145562 Msa0354550:CDS
GGAACCAATGTCAATGATGA+AGG 0.509270 3_1:+26141938 Msa0354550:CDS
AATGGAAACAGCTGCTGCAT+GGG 0.515763 3_1:-26142683 None:intergenic
CACAGTTGAATGGGAAGGCG+GGG 0.517438 3_1:+26143634 Msa0354550:intron
ATTACTTGACAACTTCGAAT+GGG 0.517605 3_1:+26145439 Msa0354550:CDS
CAATGGTACAAAGTTACAAA+AGG 0.518258 3_1:-26142091 None:intergenic
CTGCATCTTGATGAGTCAAT+GGG 0.519946 3_1:+26142124 Msa0354550:CDS
GGATAGTCTCCATAATATAG+TGG 0.522297 3_1:-26143352 None:intergenic
GAAGTTATGCGTGAACGACT+TGG 0.522922 3_1:+26143376 Msa0354550:CDS
TTATACCAAACGCTTCGGAT+TGG 0.523284 3_1:+26145469 Msa0354550:CDS
GCTGGTTGTAGACTCTGAAT+GGG 0.524122 3_1:+26142952 Msa0354550:CDS
ATAGATAGAAGGTGCTAGCA+AGG 0.527398 3_1:+26140196 Msa0354550:intron
CGCTACTATTATATACGTGA+TGG 0.529099 3_1:+26138567 Msa0354550:five_prime_UTR
TCACAGTTGAATGGGAAGGC+GGG 0.530118 3_1:+26143633 Msa0354550:intron
CCCTTCAAACCGCAGTTGGT+GGG 0.530206 3_1:+26142578 Msa0354550:CDS
ATACCTTGCATCACTTGTGC+AGG 0.530616 3_1:+26144647 Msa0354550:CDS
GTATTTGGTAAGACACATAA+TGG 0.534050 3_1:-26145616 None:intergenic
AAATGGAAACAGCTGCTGCA+TGG 0.536683 3_1:-26142684 None:intergenic
CATTACTTGACAACTTCGAA+TGG 0.539797 3_1:+26145438 Msa0354550:CDS
TGGTAGAGGTCCTAGTATAT+GGG 0.543561 3_1:+26140223 Msa0354550:CDS
AGGATAAGCAAGGGGACAAG+TGG 0.544493 3_1:+26142928 Msa0354550:intron
ATGCTTTGTATAAACTAGAG+TGG 0.546313 3_1:+26145683 Msa0354550:three_prime_UTR
GATGCTGGAGTTAATGCTCC+TGG 0.547337 3_1:+26142604 Msa0354550:CDS
ATAGAAGGTGCTAGCAAGGA+GGG 0.552629 3_1:+26140200 Msa0354550:CDS
GCAGTTGGTGGGTATGATGC+TGG 0.554523 3_1:+26142589 Msa0354550:CDS
CGGGGAGCTCATTGGTGAGA+AGG 0.559264 3_1:+26143652 Msa0354550:CDS
GGATAAGCAAGGGGACAAGT+GGG 0.559394 3_1:+26142929 Msa0354550:intron
TGGCTATATGTTGTTCCTTG+GGG 0.561938 3_1:+26143789 Msa0354550:CDS
CTGCGAGTTCGCTATTACAA+GGG 0.562943 3_1:+26144624 Msa0354550:CDS
GACAACTTCGAATGGGCTCA+AGG 0.563677 3_1:+26145446 Msa0354550:CDS
ACTGCGAGTTCGCTATTACA+AGG 0.565427 3_1:+26144623 Msa0354550:CDS
TATGCCTTCATCATTGACAT+TGG 0.565847 3_1:-26141942 None:intergenic
ATCTAGGTGTCTCGCAGCAG+CGG 0.565847 3_1:-26143008 None:intergenic
TTCACAGTTGAATGGGAAGG+CGG 0.576115 3_1:+26143632 Msa0354550:intron
TTCGCGGTTTCTTAAAGATG+GGG 0.576695 3_1:+26145550 Msa0354550:CDS
CCTCAGAGAATTTGGGAAGT+CGG 0.576873 3_1:-26143402 None:intergenic
ACTCCGAAGATGAAGTCAGA+AGG 0.587435 3_1:-26138751 None:intergenic
GTACGCGTTGAAACCCAACT+TGG 0.588904 3_1:-26140792 None:intergenic
GATGCCTATGCTTATACTGA+AGG 0.593156 3_1:+26140245 Msa0354550:CDS
GAGCCCCTTCAAACCGCAGT+TGG 0.595137 3_1:+26142574 Msa0354550:CDS
AAAGATGGGGCAAACAAGAA+GGG 0.597402 3_1:+26145563 Msa0354550:CDS
CCACCAACTGCGGTTTGAAG+GGG 0.600742 3_1:-26142577 None:intergenic
ACATTGAAGGAGTTTCAGAA+TGG 0.605695 3_1:+26138654 Msa0354550:exon
AAAATACTCGACAAAAGCAA+TGG 0.611643 3_1:+26140339 Msa0354550:CDS
ATTGACTCATCAAGATGCAG+TGG 0.618454 3_1:-26142121 None:intergenic
AGGAACCTGATAAGCAGAAG+TGG 0.620614 3_1:-26138776 None:intergenic
CTCCGAAGATGAAGTCAGAA+GGG 0.621176 3_1:-26138750 None:intergenic
AGGGATGGAGCTGATGTGAG+AGG 0.625962 3_1:+26145401 Msa0354550:intron
CATACCTTCAGTATAAGCAT+AGG 0.630354 3_1:-26140249 None:intergenic
ATGTGAGAGGACACTTTGCA+TGG 0.634153 3_1:+26145414 Msa0354550:CDS
ATAATCTTCCGAAGACCCCA+AGG 0.634887 3_1:-26143804 None:intergenic
GATAAGCAAGGGGACAAGTG+GGG 0.643777 3_1:+26142930 Msa0354550:intron
ATCATCAACACAAATGTGAG+AGG 0.646114 3_1:-26138592 None:intergenic
ACTTCCCAAATTCTCTGAGG+AGG 0.651639 3_1:+26143405 Msa0354550:CDS
TTGATGAGTCAATGGGAGGA+TGG 0.652779 3_1:+26142131 Msa0354550:CDS
TAGCCTGCACAAGTGATGCA+AGG 0.652910 3_1:-26144650 None:intergenic
GATAGAAGGTGCTAGCAAGG+AGG 0.656517 3_1:+26140199 Msa0354550:intron
CGAAGAATGTCATTATGACA+AGG 0.659806 3_1:+26143513 Msa0354550:CDS
GAAGGTGCTAGCAAGGAGGG+TGG 0.683982 3_1:+26140203 Msa0354550:CDS
CCGACTTCCCAAATTCTCTG+AGG 0.684562 3_1:+26143402 Msa0354550:CDS
AGCATCATACCCACCAACTG+CGG 0.685967 3_1:-26142587 None:intergenic
CATCTTGATGAGTCAATGGG+AGG 0.710481 3_1:+26142127 Msa0354550:CDS
TATAACAGGCAGCATCAGAG+TGG 0.713683 3_1:+26143769 Msa0354550:intron
GATGCAGTGGAAGATCCCAA+TGG 0.714924 3_1:-26142108 None:intergenic
GCCTAAATCACTATACAACG+AGG 0.773876 3_1:+26143464 Msa0354550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACATATATATATTTTTTTG+GGG + chr3_1:26139403-26139422 Msa0354550:intron 10.0%
!!! AAATACATATCTTTTTTATA+TGG + chr3_1:26140874-26140893 Msa0354550:intron 10.0%
!!! AAATTTTAAAGAAAAAGAAA+AGG + chr3_1:26141123-26141142 Msa0354550:intron 10.0%
!! TAACAAATTAAATATATACT+TGG - chr3_1:26142361-26142380 None:intergenic 10.0%
!!! GTATATATTTAATTTGTTAT+TGG + chr3_1:26142362-26142381 Msa0354550:intron 10.0%
!! ATATTTATCAAAAAATTTAG+AGG - chr3_1:26142394-26142413 None:intergenic 10.0%
!! AGAGAATAAAAAAAAAATTA+AGG + chr3_1:26145227-26145246 Msa0354550:intron 10.0%
!! GAGAATAAAAAAAAAATTAA+GGG + chr3_1:26145228-26145247 Msa0354550:intron 10.0%
!!! ACATATATATATTTTTTTGG+GGG + chr3_1:26139404-26139423 Msa0354550:intron 15.0%
!!! CATTTTATGTAAACTTTTTT+TGG + chr3_1:26139908-26139927 Msa0354550:intron 15.0%
!!! CGAAAAAATGTTATATTTTA+TGG - chr3_1:26141154-26141173 None:intergenic 15.0%
!! TATGTAAAACCTAAAAATAA+TGG - chr3_1:26141795-26141814 None:intergenic 15.0%
!!! TATTATATTGCAATGTTTTA+TGG + chr3_1:26141901-26141920 Msa0354550:intron 15.0%
!!! ATTATATTGCAATGTTTTAT+GGG + chr3_1:26141902-26141921 Msa0354550:intron 15.0%
!! TAGAAGAGATAAAAATATTA+AGG - chr3_1:26142033-26142052 None:intergenic 15.0%
!! TATAAAACAAATGTATGTAT+AGG - chr3_1:26143054-26143073 None:intergenic 15.0%
!!! AATATTTCTTTTGAATTCTT+TGG + chr3_1:26143432-26143451 Msa0354550:CDS 15.0%
!! TATATTAATAAACGATAGAA+GGG - chr3_1:26144178-26144197 None:intergenic 15.0%
!! TAATATAAAAACGAAGTATA+TGG + chr3_1:26145000-26145019 Msa0354550:intron 15.0%
!!! TATAAAAAATGGAGTTTTAA+AGG - chr3_1:26145755-26145774 None:intergenic 15.0%
!! ATTTCTATAGTATAGATGTT+GGG - chr3_1:26139037-26139056 None:intergenic 20.0%
!! TTTATAATATATGTAAGAGC+CGG - chr3_1:26139446-26139465 None:intergenic 20.0%
!!! TTTTGTTATAGTTGTTTTTG+TGG + chr3_1:26139864-26139883 Msa0354550:intron 20.0%
!! GTTTCAGAGAAAAATTAAAT+CGG - chr3_1:26140155-26140174 None:intergenic 20.0%
!! AATTTGCATACACAATATTT+AGG - chr3_1:26140420-26140439 None:intergenic 20.0%
!!! TAATTAATTTGGTAAAGGTT+TGG - chr3_1:26141596-26141615 None:intergenic 20.0%
!!! TAAGTAGTGGATAATTAATT+TGG - chr3_1:26141607-26141626 None:intergenic 20.0%
!!! ACCTAAAAATAATGGTTTTA+GGG - chr3_1:26141787-26141806 None:intergenic 20.0%
!!! AACCTAAAAATAATGGTTTT+AGG - chr3_1:26141788-26141807 None:intergenic 20.0%
!!! CTTACATTAATATGTTGATT+TGG + chr3_1:26141835-26141854 Msa0354550:intron 20.0%
!! TGGGAAATGATTAATATATA+TGG - chr3_1:26142060-26142079 None:intergenic 20.0%
!! GTTGAATAAAAATATCATGT+AGG + chr3_1:26142153-26142172 Msa0354550:intron 20.0%
!! GTTGAATAAAAAAATCATGT+AGG + chr3_1:26142286-26142305 Msa0354550:intron 20.0%
!! TATCAAAAAATTTAGAGGTA+AGG - chr3_1:26142389-26142408 None:intergenic 20.0%
!!! TTGTCTGTTATATTTTTTTG+CGG + chr3_1:26142772-26142791 Msa0354550:intron 20.0%
!! GAGTTTAATATTTAGAGAAT+AGG - chr3_1:26143205-26143224 None:intergenic 20.0%
!! ATATTAATAAACGATAGAAG+GGG - chr3_1:26144177-26144196 None:intergenic 20.0%
!! GTATATTAATAAACGATAGA+AGG - chr3_1:26144179-26144198 None:intergenic 20.0%
!!! ATAAACAGATTTTATATGAC+TGG + chr3_1:26144489-26144508 Msa0354550:intron 20.0%
!! CGATAATTTGAAAAATAAAC+TGG - chr3_1:26144727-26144746 None:intergenic 20.0%
!!! TTCAATGTTTTTAAGCAAAT+AGG - chr3_1:26145127-26145146 None:intergenic 20.0%
!! CAAATGATTTACAAAACTTT+AGG - chr3_1:26145374-26145393 None:intergenic 20.0%
!!! CATTATTTTCTTGTAGTATT+TGG - chr3_1:26145634-26145653 None:intergenic 20.0%
!!! CAAATAATGACATAAGTTTT+TGG - chr3_1:26145662-26145681 None:intergenic 20.0%
!! CAAAAACTTATGTCATTATT+TGG + chr3_1:26145660-26145679 Msa0354550:three_prime_UTR 20.0%
!! GCTAAGACAAATATAAAAAA+TGG - chr3_1:26145766-26145785 None:intergenic 20.0%
!!! CATTTGTCTTTTTGATGATT+TGG + chr3_1:26138816-26138835 Msa0354550:intron 25.0%
! CATTTCTATAGTATAGATGT+TGG - chr3_1:26139038-26139057 None:intergenic 25.0%
!! ATATAAGCACATTTTATTCG+AGG + chr3_1:26139349-26139368 Msa0354550:intron 25.0%
! TTATAATATATGTAAGAGCC+GGG - chr3_1:26139445-26139464 None:intergenic 25.0%
! GAATATAGGAATATCTCAAT+TGG - chr3_1:26139566-26139585 None:intergenic 25.0%
! TATCTTGATCTTGAAATTGA+AGG + chr3_1:26139762-26139781 Msa0354550:intron 25.0%
!!! CTTTTTTTGGTATTTTGTTC+TGG + chr3_1:26139921-26139940 Msa0354550:intron 25.0%
!!! TGCTTATTTCTATAGATAGA+AGG + chr3_1:26140185-26140204 Msa0354550:intron 25.0%
! TGATCATTATCATCGTTATA+AGG + chr3_1:26140374-26140393 Msa0354550:CDS 25.0%
! ATCACTAATAAAACATACCA+GGG - chr3_1:26140847-26140866 None:intergenic 25.0%
! TGTTTACAACAGATGATTAA+AGG + chr3_1:26141017-26141036 Msa0354550:intron 25.0%
! TCTTTACTTTACCATCTTAT+CGG - chr3_1:26141085-26141104 None:intergenic 25.0%
!!! AGTGCAATTTTTTTATACAG+TGG + chr3_1:26141193-26141212 Msa0354550:intron 25.0%
!!! GTGCAATTTTTTTATACAGT+GGG + chr3_1:26141194-26141213 Msa0354550:intron 25.0%
!!! TGCAATTTTTTTATACAGTG+GGG + chr3_1:26141195-26141214 Msa0354550:intron 25.0%
!! ATTAGTCAACAACTTGTTTA+AGG - chr3_1:26141401-26141420 None:intergenic 25.0%
!! AACAAGTTGTTGACTAATAT+AGG + chr3_1:26141403-26141422 Msa0354550:intron 25.0%
!! GTGGATAATTAATTTGGTAA+AGG - chr3_1:26141601-26141620 None:intergenic 25.0%
!!! TCCCTAAAACCATTATTTTT+AGG + chr3_1:26141783-26141802 Msa0354550:intron 25.0%
! TAAAAATATTAAGGCAAAGC+AGG - chr3_1:26142024-26142043 None:intergenic 25.0%
! ATATATTAATCATTTCCCAC+AGG + chr3_1:26142061-26142080 Msa0354550:intron 25.0%
!! TTTTGTAACTTTGTACCATT+GGG + chr3_1:26142093-26142112 Msa0354550:CDS 25.0%
! AAGTATTAAAGGTTATGATG+TGG + chr3_1:26142264-26142283 Msa0354550:intron 25.0%
! TGCATTCAGTAATAGAATAT+TGG - chr3_1:26142454-26142473 None:intergenic 25.0%
! TTGAAAATATATTCTTCGAC+AGG - chr3_1:26142801-26142820 None:intergenic 25.0%
! CGAAGTTATGATATTAATGA+GGG - chr3_1:26142843-26142862 None:intergenic 25.0%
! TATATCAAGTGGAAAATCTA+TGG - chr3_1:26143098-26143117 None:intergenic 25.0%
! ATTAAACTCAAAACAGCAAA+AGG + chr3_1:26143216-26143235 Msa0354550:intron 25.0%
! GATAGAATATATTCTTAACC+AGG + chr3_1:26143320-26143339 Msa0354550:intron 25.0%
! AGAATATAAACTTGCATGTT+TGG - chr3_1:26143742-26143761 None:intergenic 25.0%
! ATATTCTATGTGCATATAAC+AGG + chr3_1:26143755-26143774 Msa0354550:intron 25.0%
!!! TCCACTTTTAGAAAACAAAT+AGG + chr3_1:26143902-26143921 Msa0354550:intron 25.0%
!!! CCACTTTTAGAAAACAAATA+GGG + chr3_1:26143903-26143922 Msa0354550:intron 25.0%
! CAAAGAGAACAAAACATAAA+AGG - chr3_1:26144035-26144054 None:intergenic 25.0%
!!! CTTTTATGTTTTGTTCTCTT+TGG + chr3_1:26144033-26144052 Msa0354550:intron 25.0%
!!! TTTTGGCTTTACATAAATAC+TGG - chr3_1:26144061-26144080 None:intergenic 25.0%
!! AGGAAAAAAGTGATACATTT+TGG - chr3_1:26144078-26144097 None:intergenic 25.0%
!! GTAAGAAAAGTGATACATTT+TGG - chr3_1:26144147-26144166 None:intergenic 25.0%
! CAATACATAACAGGATAAAT+TGG - chr3_1:26144203-26144222 None:intergenic 25.0%
! AGTTAGAAACAATACATAAC+AGG - chr3_1:26144212-26144231 None:intergenic 25.0%
! TCGTGAACTATAAAAAAGAA+CGG + chr3_1:26144286-26144305 Msa0354550:intron 25.0%
!! AGAACCATTTTATAAAGTTC+TGG - chr3_1:26144516-26144535 None:intergenic 25.0%
! AAATGGTTCTCGTATTTATA+AGG + chr3_1:26144526-26144545 Msa0354550:intron 25.0%
! TATGAATAGAGAGAATTGAA+TGG + chr3_1:26144752-26144771 Msa0354550:intron 25.0%
!! AAACATTGAAAGTTTAGAAC+AGG + chr3_1:26145137-26145156 Msa0354550:intron 25.0%
!! AACATTGAAAGTTTAGAACA+GGG + chr3_1:26145138-26145157 Msa0354550:intron 25.0%
!! AAGGCTTTTATGATTTTCAA+TGG - chr3_1:26145183-26145202 None:intergenic 25.0%
! AAATCATGTATAGATCAGAA+AGG - chr3_1:26145202-26145221 None:intergenic 25.0%
! GTCTATGTAGATTACAAAAA+TGG + chr3_1:26145491-26145510 Msa0354550:CDS 25.0%
! GGCATATGAAATATAAGATT+TGG - chr3_1:26145734-26145753 None:intergenic 25.0%
! GAAGAATTTCTGAGAGAAAA+TGG + chr3_1:26138685-26138704 Msa0354550:CDS 30.0%
!!! GAAAATGGTTTTGAGAAAGA+AGG + chr3_1:26138700-26138719 Msa0354550:CDS 30.0%
ATGTGATAGTTTAAGCACAA+AGG - chr3_1:26138799-26138818 None:intergenic 30.0%
TATGAGTCATCTTACTTACA+AGG - chr3_1:26138914-26138933 None:intergenic 30.0%
TTCAAAGCTTACAAACTCTA+AGG + chr3_1:26139198-26139217 Msa0354550:intron 30.0%
!!! ATATATTTTTTTGGGGGTGT+CGG + chr3_1:26139410-26139429 Msa0354550:intron 30.0%
TATAATATATGTAAGAGCCG+GGG - chr3_1:26139444-26139463 None:intergenic 30.0%
TGGAGTAAATGCATGAATAT+AGG - chr3_1:26139580-26139599 None:intergenic 30.0%
TATTCATGCATTTACTCCAT+TGG + chr3_1:26139581-26139600 Msa0354550:intron 30.0%
ATGAATATAACAGTCACCAA+TGG - chr3_1:26139600-26139619 None:intergenic 30.0%
! AAATTTCAAGCTCGCTATTT+TGG - chr3_1:26139680-26139699 None:intergenic 30.0%
TCTTAATTCTAACCTATCCA+CGG + chr3_1:26139991-26140010 Msa0354550:intron 30.0%
TTATTCTGTTGTTGATCCTA+TGG + chr3_1:26140078-26140097 Msa0354550:intron 30.0%
TGAGCAATAGTTAAAACCAT+AGG - chr3_1:26140097-26140116 None:intergenic 30.0%
ACTATTGCTCAAATGAGTAA+TGG + chr3_1:26140106-26140125 Msa0354550:intron 30.0%
!! AAATGAGTAATGGTATTGGT+AGG + chr3_1:26140116-26140135 Msa0354550:intron 30.0%
ATCACAATTTGAGCAAATTG+AGG - chr3_1:26140285-26140304 None:intergenic 30.0%
!!! TTACTATCTGCTTGTTGTTT+TGG + chr3_1:26140311-26140330 Msa0354550:intron 30.0%
AAAATACTCGACAAAAGCAA+TGG + chr3_1:26140339-26140358 Msa0354550:CDS 30.0%
!! ATGTCTTTCTGGATTGATTT+TGG + chr3_1:26140544-26140563 Msa0354550:intron 30.0%
!! GCATTTAAATGTTGCTTTAC+AGG + chr3_1:26140584-26140603 Msa0354550:intron 30.0%
CTTAATGTAACTATGTGAAC+AGG + chr3_1:26140751-26140770 Msa0354550:intron 30.0%
TATTGATCTTATAGCCAAGT+TGG + chr3_1:26140778-26140797 Msa0354550:CDS 30.0%
ATTGATCTTATAGCCAAGTT+GGG + chr3_1:26140779-26140798 Msa0354550:CDS 30.0%
! CGTACAGATTTTCAATTTCT+TGG + chr3_1:26140810-26140829 Msa0354550:CDS 30.0%
CATCACTAATAAAACATACC+AGG - chr3_1:26140848-26140867 None:intergenic 30.0%
! TGGTTAATATTTGCCTCTTT+TGG + chr3_1:26140982-26141001 Msa0354550:intron 30.0%
! GCGTAAATTAAGTCTTTTCT+GGG + chr3_1:26141039-26141058 Msa0354550:intron 30.0%
! TAAATTAAGTCTTTTCTGGG+AGG + chr3_1:26141042-26141061 Msa0354550:intron 30.0%
!! AAATTAAGTCTTTTCTGGGA+GGG + chr3_1:26141043-26141062 Msa0354550:intron 30.0%
GATGGTAAAGTAAAGAAGAT+AGG + chr3_1:26141089-26141108 Msa0354550:intron 30.0%
TAAAGTAAAGAAGATAGGAG+AGG + chr3_1:26141094-26141113 Msa0354550:intron 30.0%
!!! AATTTTTTTATACAGTGGGG+AGG + chr3_1:26141198-26141217 Msa0354550:intron 30.0%
AGCGAAATAAAAAGAAAGCA+CGG + chr3_1:26141266-26141285 Msa0354550:intron 30.0%
ACATTACATATCCTTTCCTA+TGG - chr3_1:26141307-26141326 None:intergenic 30.0%
! TTGTTGACTAATATAGGAGA+TGG + chr3_1:26141409-26141428 Msa0354550:intron 30.0%
TATTTCTTGTGCAGAGTTTA+CGG - chr3_1:26141466-26141485 None:intergenic 30.0%
TAAACTCTGCACAAGAAATA+TGG + chr3_1:26141466-26141485 Msa0354550:intron 30.0%
! CAAGATTGCTAAATGTTTTG+AGG + chr3_1:26141739-26141758 Msa0354550:intron 30.0%
!!! AAATAATGGTTTTAGGGACA+AGG - chr3_1:26141781-26141800 None:intergenic 30.0%
ATCAATGCTCTTCTTGAAAA+AGG + chr3_1:26141983-26142002 Msa0354550:CDS 30.0%
CAATGGTACAAAGTTACAAA+AGG - chr3_1:26142094-26142113 None:intergenic 30.0%
! CTTTTGTAACTTTGTACCAT+TGG + chr3_1:26142092-26142111 Msa0354550:CDS 30.0%
!! GATGTGCTTGAAAGTATTAA+AGG + chr3_1:26142253-26142272 Msa0354550:intron 30.0%
GCGAAGTTATGATATTAATG+AGG - chr3_1:26142844-26142863 None:intergenic 30.0%
TCTTCAATCTTATCAGAGTT+TGG - chr3_1:26142983-26143002 None:intergenic 30.0%
CTTCATGCATTTATATCAAG+TGG - chr3_1:26143109-26143128 None:intergenic 30.0%
TATAAATGCATGAAGATGTG+TGG + chr3_1:26143114-26143133 Msa0354550:intron 30.0%
! TACATTTTTGCGTTTAACGT+TGG + chr3_1:26143160-26143179 Msa0354550:intron 30.0%
TTCTTGCATCCACTATATTA+TGG + chr3_1:26143343-26143362 Msa0354550:CDS 30.0%
TTGAATTCTTTGGACTTCAT+TGG + chr3_1:26143442-26143461 Msa0354550:CDS 30.0%
CTTGTCATAATGACATTCTT+CGG - chr3_1:26143515-26143534 None:intergenic 30.0%
! TCATCAAGGAAGATTCATTT+TGG - chr3_1:26143601-26143620 None:intergenic 30.0%
!! TTTTCTAAAAGTGGACAAGA+AGG - chr3_1:26143897-26143916 None:intergenic 30.0%
!! CCCTATTTGTTTTCTAAAAG+TGG - chr3_1:26143906-26143925 None:intergenic 30.0%
TTTGAATCTTCTGTAGTGTT+TGG + chr3_1:26143983-26144002 Msa0354550:intron 30.0%
AGAGAACAAAACATAAAAGG+CGG - chr3_1:26144032-26144051 None:intergenic 30.0%
GAAAATAGAACAGAACATGT+AGG - chr3_1:26144098-26144117 None:intergenic 30.0%
!!! CATTTTGGTTCTACACAAAT+GGG - chr3_1:26144132-26144151 None:intergenic 30.0%
!!! ACATTTTGGTTCTACACAAA+TGG - chr3_1:26144133-26144152 None:intergenic 30.0%
! TAACTTGTCTCTCAAATGAA+TGG + chr3_1:26144227-26144246 Msa0354550:intron 30.0%
AGAACGGAAATATGTGTAAA+TGG + chr3_1:26144302-26144321 Msa0354550:intron 30.0%
TTATGTTATATGGCTCAACA+AGG + chr3_1:26144336-26144355 Msa0354550:intron 30.0%
AATCCTGATTAGATAGCATA+AGG + chr3_1:26144419-26144438 Msa0354550:intron 30.0%
GTTGAAGATATGTCAACAAT+AGG + chr3_1:26144441-26144460 Msa0354550:intron 30.0%
TGGACCAGAACTTTATAAAA+TGG + chr3_1:26144509-26144528 Msa0354550:intron 30.0%
! GTCTTTTCATTTAACAGGTA+TGG + chr3_1:26144551-26144570 Msa0354550:intron 30.0%
TAATCTTTGCTTAGCTGATA+TGG + chr3_1:26144965-26144984 Msa0354550:intron 30.0%
TGACAGACATATGCATAATA+AGG - chr3_1:26145044-26145063 None:intergenic 30.0%
! GAAGTTCAAACGATTTTACT+CGG - chr3_1:26145321-26145340 None:intergenic 30.0%
TGTAAATCATTTGAATGCAC+AGG + chr3_1:26145381-26145400 Msa0354550:intron 30.0%
GTAAATCATTTGAATGCACA+GGG + chr3_1:26145382-26145401 Msa0354550:intron 30.0%
ATTACTTGACAACTTCGAAT+GGG + chr3_1:26145439-26145458 Msa0354550:CDS 30.0%
! ATTACAAAAATGGACTCACT+AGG + chr3_1:26145501-26145520 Msa0354550:CDS 30.0%
GTATTTGGTAAGACACATAA+TGG - chr3_1:26145619-26145638 None:intergenic 30.0%
ATGCTTTGTATAAACTAGAG+TGG + chr3_1:26145683-26145702 Msa0354550:three_prime_UTR 30.0%
CGCTACTATTATATACGTGA+TGG + chr3_1:26138567-26138586 Msa0354550:five_prime_UTR 35.0%
ATCATCAACACAAATGTGAG+AGG - chr3_1:26138595-26138614 None:intergenic 35.0%
ACATTGAAGGAGTTTCAGAA+TGG + chr3_1:26138654-26138673 Msa0354550:exon 35.0%
! TTGGTGCTTGTAATGCTATT+TGG + chr3_1:26138835-26138854 Msa0354550:intron 35.0%
ACTCAAAACCTTGAGGTAAT+GGG - chr3_1:26138939-26138958 None:intergenic 35.0%
TACTCAAAACCTTGAGGTAA+TGG - chr3_1:26138940-26138959 None:intergenic 35.0%
ACTAAACAGACTTATGCAAG+CGG - chr3_1:26139179-26139198 None:intergenic 35.0%
!! ACTCTAAGGCTGAGTTTAAT+CGG + chr3_1:26139212-26139231 Msa0354550:intron 35.0%
ATCAGATGTTCAATACAACG+AGG - chr3_1:26139316-26139335 None:intergenic 35.0%
AAAAATTCTCAGTGTCTCTC+TGG + chr3_1:26139477-26139496 Msa0354550:intron 35.0%
GAGCTTGAAATTTGAACTGT+CGG + chr3_1:26139687-26139706 Msa0354550:intron 35.0%
AGCTTGAAATTTGAACTGTC+GGG + chr3_1:26139688-26139707 Msa0354550:intron 35.0%
AAATTAGGAACAGAAAACCG+TGG - chr3_1:26140011-26140030 None:intergenic 35.0%
GCTCAAATGAGTAATGGTAT+TGG + chr3_1:26140112-26140131 Msa0354550:intron 35.0%
CATACCTTCAGTATAAGCAT+AGG - chr3_1:26140252-26140271 None:intergenic 35.0%
CAACAAGCAGATAGTAAGTA+AGG - chr3_1:26140308-26140327 None:intergenic 35.0%
!!! TATCTGCTTGTTGTTTTGGT+AGG + chr3_1:26140315-26140334 Msa0354550:intron 35.0%
GTCTGTACATAATGTCTTTC+TGG + chr3_1:26140533-26140552 Msa0354550:intron 35.0%
TTCGTGCTCAAAAATAGACT+CGG - chr3_1:26140629-26140648 None:intergenic 35.0%
CTGATAAACTTCTAGGCTTA+AGG - chr3_1:26140936-26140955 None:intergenic 35.0%
!! CATTGACCAAGTATTGATGA+CGG - chr3_1:26140964-26140983 None:intergenic 35.0%
ATGTCTTTATGAGCCAAAAG+AGG - chr3_1:26140998-26141017 None:intergenic 35.0%
! GGCGTAAATTAAGTCTTTTC+TGG + chr3_1:26141038-26141057 Msa0354550:intron 35.0%
! ACTTTACCATCTTATCGGTT+GGG - chr3_1:26141080-26141099 None:intergenic 35.0%
TACTTTACCATCTTATCGGT+TGG - chr3_1:26141081-26141100 None:intergenic 35.0%
AAAAATTGCACTCTCCTATC+TGG - chr3_1:26141185-26141204 None:intergenic 35.0%
AAAAATGTGACACACACTAC+TGG + chr3_1:26141360-26141379 Msa0354550:intron 35.0%
GAGCTTAATTTCGTAGTTCA+TGG - chr3_1:26141501-26141520 None:intergenic 35.0%
ACTAACAGACTTAAACCATC+CGG + chr3_1:26141549-26141568 Msa0354550:intron 35.0%
TATGTGAACGATGTAAGTAG+TGG - chr3_1:26141620-26141639 None:intergenic 35.0%
! TGTAGCAGGTTAGTTAGAAT+GGG - chr3_1:26141645-26141664 None:intergenic 35.0%
! ATGTAGCAGGTTAGTTAGAA+TGG - chr3_1:26141646-26141665 None:intergenic 35.0%
ATTCTAACTAACCTGCTACA+TGG + chr3_1:26141645-26141664 Msa0354550:intron 35.0%
! CAATGTTTTATGGGTGTAGA+TGG + chr3_1:26141911-26141930 Msa0354550:intron 35.0%
TATGCCTTCATCATTGACAT+TGG - chr3_1:26141945-26141964 None:intergenic 35.0%
ACAAAAGGTTGAATACCTGT+GGG - chr3_1:26142079-26142098 None:intergenic 35.0%
TACAAAAGGTTGAATACCTG+TGG - chr3_1:26142080-26142099 None:intergenic 35.0%
AGGTATCATCTAACTGAGTA+TGG + chr3_1:26142306-26142325 Msa0354550:intron 35.0%
! GATACTTGCTTTGCAAGTTT+TGG + chr3_1:26142520-26142539 Msa0354550:CDS 35.0%
TTGGCGATAAAGTGAAAAAC+TGG + chr3_1:26142539-26142558 Msa0354550:CDS 35.0%
!!! GATCTATTTTGACTTCTTCC+AGG - chr3_1:26142625-26142644 None:intergenic 35.0%
AATGAGGGTAGTTGCTATAT+AGG - chr3_1:26142828-26142847 None:intergenic 35.0%
!!! GCGTGCACAGTTTTATTATA+AGG + chr3_1:26142862-26142881 Msa0354550:intron 35.0%
TAAGGTTTGCACAATAGTTG+AGG + chr3_1:26142880-26142899 Msa0354550:intron 35.0%
CTTTATTCTCTTGATGTTCC+AGG + chr3_1:26142908-26142927 Msa0354550:intron 35.0%
TCGTGAACACTAGAAATTGA+AGG + chr3_1:26143259-26143278 Msa0354550:intron 35.0%
ACACTAGAAATTGAAGGTTG+AGG + chr3_1:26143265-26143284 Msa0354550:intron 35.0%
AGGTTGAGGATATTTAACCT+TGG + chr3_1:26143279-26143298 Msa0354550:intron 35.0%
GGATAGTCTCCATAATATAG+TGG - chr3_1:26143355-26143374 None:intergenic 35.0%
TTATCCTCCTCAGAGAATTT+GGG - chr3_1:26143412-26143431 None:intergenic 35.0%
TTTATCCTCCTCAGAGAATT+TGG - chr3_1:26143413-26143432 None:intergenic 35.0%
ACCTCGTTGTATAGTGATTT+AGG - chr3_1:26143468-26143487 None:intergenic 35.0%
CGAAGAATGTCATTATGACA+AGG + chr3_1:26143513-26143532 Msa0354550:CDS 35.0%
GAAAAACAGCTCAATCATCA+AGG - chr3_1:26143615-26143634 None:intergenic 35.0%
!!! AGCTGTTTTTCACAGTTGAA+TGG + chr3_1:26143624-26143643 Msa0354550:intron 35.0%
!!! GCTGTTTTTCACAGTTGAAT+GGG + chr3_1:26143625-26143644 Msa0354550:intron 35.0%
! TTTTTCACAGTTGAATGGGA+AGG + chr3_1:26143629-26143648 Msa0354550:intron 35.0%
AGAAAGTCACATACCATTCT+CGG - chr3_1:26143871-26143890 None:intergenic 35.0%
AACCACTCGATAGAAAATTG+AGG + chr3_1:26143930-26143949 Msa0354550:intron 35.0%
ACCACTCGATAGAAAATTGA+GGG + chr3_1:26143931-26143950 Msa0354550:intron 35.0%
CGAGTGTGAGTTATGTTATA+TGG + chr3_1:26144326-26144345 Msa0354550:intron 35.0%
CAACCTTATGCTATCTAATC+AGG - chr3_1:26144425-26144444 None:intergenic 35.0%
! AGGCTGTCTTTTCATTTAAC+AGG + chr3_1:26144546-26144565 Msa0354550:intron 35.0%
TCATCTAGCATCTCATTTAG+TGG - chr3_1:26144600-26144619 None:intergenic 35.0%
GCTTATCATGTGTAACAAAC+AGG + chr3_1:26144845-26144864 Msa0354550:intron 35.0%
CATTACTTGACAACTTCGAA+TGG + chr3_1:26145438-26145457 Msa0354550:CDS 35.0%
ACCAATATGCAGAAGACTTT+GGG - chr3_1:26145529-26145548 None:intergenic 35.0%
AACCAATATGCAGAAGACTT+TGG - chr3_1:26145530-26145549 None:intergenic 35.0%
! TTTTCGCGGTTTCTTAAAGA+TGG + chr3_1:26145548-26145567 Msa0354550:CDS 35.0%
TTTCGCGGTTTCTTAAAGAT+GGG + chr3_1:26145549-26145568 Msa0354550:CDS 35.0%
AGAGTAGCTGTGAACATTGA+AGG + chr3_1:26138641-26138660 Msa0354550:five_prime_UTR 40.0%
TTCCCTTCTGACTTCATCTT+CGG + chr3_1:26138748-26138767 Msa0354550:CDS 40.0%
TCTATTGTTGTGTGCAAGTG+TGG + chr3_1:26138860-26138879 Msa0354550:intron 40.0%
CTATTGTTGTGTGCAAGTGT+GGG + chr3_1:26138861-26138880 Msa0354550:intron 40.0%
GGGATCGGATAGAAAAGTAA+AGG + chr3_1:26138881-26138900 Msa0354550:intron 40.0%
CTCATAAACCCATTACCTCA+AGG + chr3_1:26138928-26138947 Msa0354550:intron 40.0%
CACTCTTACTCAAAACCTTG+AGG - chr3_1:26138946-26138965 None:intergenic 40.0%
!!! CAAGGTTTTGAGTAAGAGTG+TGG + chr3_1:26138946-26138965 Msa0354550:intron 40.0%
TATAGATGTTGGGTCACTGA+GGG - chr3_1:26139027-26139046 None:intergenic 40.0%
AGCTAATAATATGGCAACCC+CGG - chr3_1:26139269-26139288 None:intergenic 40.0%
!! GGTGGGACTAGCTAATAATA+TGG - chr3_1:26139278-26139297 None:intergenic 40.0%
! ACAACGAGGTACCATAGAAT+AGG - chr3_1:26139302-26139321 None:intergenic 40.0%
! GAAATTGAGAGTGATGGTGA+TGG + chr3_1:26139508-26139527 Msa0354550:intron 40.0%
!! AGAGTGATGGTGATGGTTTA+GGG + chr3_1:26139515-26139534 Msa0354550:intron 40.0%
TAGGGGTGAAACTGAGATAA+TGG + chr3_1:26139533-26139552 Msa0354550:intron 40.0%
AATCTCTAGATTCGTGCACT+CGG - chr3_1:26139739-26139758 None:intergenic 40.0%
!! GGTATTGGTAGGCGATTATA+TGG + chr3_1:26140127-26140146 Msa0354550:intron 40.0%
!! ATAGATAGAAGGTGCTAGCA+AGG + chr3_1:26140196-26140215 Msa0354550:intron 40.0%
TGGTAGAGGTCCTAGTATAT+GGG + chr3_1:26140223-26140242 Msa0354550:CDS 40.0%
GATGCCTATGCTTATACTGA+AGG + chr3_1:26140245-26140264 Msa0354550:CDS 40.0%
!! AATGTTGCTTTACAGGAGAC+TGG + chr3_1:26140591-26140610 Msa0354550:intron 40.0%
TCGTGCTCAAAAATAGACTC+GGG - chr3_1:26140628-26140647 None:intergenic 40.0%
CGTCATCAATACTTGGTCAA+TGG + chr3_1:26140962-26140981 Msa0354550:intron 40.0%
! AAAGAAAGCACGGAATACAC+AGG + chr3_1:26141276-26141295 Msa0354550:intron 40.0%
GAATACACAGGCTTTACCAT+AGG + chr3_1:26141288-26141307 Msa0354550:intron 40.0%
TAACAAACTAGCCATGTAGC+AGG - chr3_1:26141659-26141678 None:intergenic 40.0%
! ACTCTGTAGTGTGAGAGTAT+GGG - chr3_1:26141692-26141711 None:intergenic 40.0%
AACTCTGTAGTGTGAGAGTA+TGG - chr3_1:26141693-26141712 None:intergenic 40.0%
TTTATGGGTGTAGATGGCTT+AGG + chr3_1:26141917-26141936 Msa0354550:intron 40.0%
GGAACCAATGTCAATGATGA+AGG + chr3_1:26141938-26141957 Msa0354550:CDS 40.0%
! ATTGACTCATCAAGATGCAG+TGG - chr3_1:26142124-26142143 None:intergenic 40.0%
ACTGCATCTTGATGAGTCAA+TGG + chr3_1:26142123-26142142 Msa0354550:CDS 40.0%
CTGCATCTTGATGAGTCAAT+GGG + chr3_1:26142124-26142143 Msa0354550:CDS 40.0%
TTGGCATCAGATACTTCGTA+AGG - chr3_1:26142342-26142361 None:intergenic 40.0%
CTGAATGCAGTGTACATATG+TGG + chr3_1:26142465-26142484 Msa0354550:intron 40.0%
! TGATGATGTGCTGCTAAGTA+TGG - chr3_1:26142655-26142674 None:intergenic 40.0%
AGCAGCACATCATCAAATCT+TGG + chr3_1:26142660-26142679 Msa0354550:CDS 40.0%
CTTGTACTTGCTTCGGTAAA+TGG - chr3_1:26142704-26142723 None:intergenic 40.0%
CATTTACCGAAGCAAGTACA+AGG + chr3_1:26142702-26142721 Msa0354550:intron 40.0%
GTTTGACCTTGTACTTGCTT+CGG - chr3_1:26142711-26142730 None:intergenic 40.0%
TTGATGTTCCAGGATAAGCA+AGG + chr3_1:26142918-26142937 Msa0354550:intron 40.0%
TGATGTTCCAGGATAAGCAA+GGG + chr3_1:26142919-26142938 Msa0354550:intron 40.0%
! AGACACCTAGATTTTCGTCT+TGG + chr3_1:26143019-26143038 Msa0354550:CDS 40.0%
GTGTGGACACAAACTTACAA+AGG + chr3_1:26143131-26143150 Msa0354550:intron 40.0%
CTCAAAACAGCAAAAGGTCT+TGG + chr3_1:26143222-26143241 Msa0354550:intron 40.0%
TAAGCATGCATCTTACACCA+AGG - chr3_1:26143299-26143318 None:intergenic 40.0%
!! ATATAGTGGATGCAAGAACC+TGG - chr3_1:26143341-26143360 None:intergenic 40.0%
GCCTAAATCACTATACAACG+AGG + chr3_1:26143464-26143483 Msa0354550:CDS 40.0%
TACCATCTATGTCTCTCTGT+CGG + chr3_1:26143679-26143698 Msa0354550:intron 40.0%
AGTGGCTATATGTTGTTCCT+TGG + chr3_1:26143787-26143806 Msa0354550:CDS 40.0%
GTGGCTATATGTTGTTCCTT+GGG + chr3_1:26143788-26143807 Msa0354550:CDS 40.0%
TGGCTATATGTTGTTCCTTG+GGG + chr3_1:26143789-26143808 Msa0354550:CDS 40.0%
CCATTCTCGGTGACATATAT+CGG - chr3_1:26143858-26143877 None:intergenic 40.0%
! TCCCTCAATTTTCTATCGAG+TGG - chr3_1:26143935-26143954 None:intergenic 40.0%
!! TTGGTTCTACACAAATGGGT+TGG - chr3_1:26144128-26144147 None:intergenic 40.0%
AAACGATAGAAGGGGACAAA+AGG - chr3_1:26144169-26144188 None:intergenic 40.0%
!! TATTTTGAGAGCTGCAACCT+AGG + chr3_1:26144377-26144396 Msa0354550:intron 40.0%
TATGTCAACAATAGGATCCG+CGG + chr3_1:26144449-26144468 Msa0354550:intron 40.0%
CATCTATTAAATCAGAGCCG+CGG - chr3_1:26144469-26144488 None:intergenic 40.0%
AGGTGTGTGTGAGAAGAAAA+TGG - chr3_1:26144689-26144708 None:intergenic 40.0%
! ACTGGTTTAACTCGTAGATG+AGG - chr3_1:26144709-26144728 None:intergenic 40.0%
ACTCGGTCAGTTGTTATGTT+AGG - chr3_1:26145304-26145323 None:intergenic 40.0%
ATCATTTGAATGCACAGGGA+TGG + chr3_1:26145386-26145405 Msa0354550:intron 40.0%
CAAGGTTATACCAAACGCTT+CGG + chr3_1:26145464-26145483 Msa0354550:CDS 40.0%
TTATACCAAACGCTTCGGAT+TGG + chr3_1:26145469-26145488 Msa0354550:CDS 40.0%
ACCCAAAGTCTTCTGCATAT+TGG + chr3_1:26145525-26145544 Msa0354550:CDS 40.0%
!!! CTTCTGCATATTGGTTTTCG+CGG + chr3_1:26145534-26145553 Msa0354550:CDS 40.0%
TTCGCGGTTTCTTAAAGATG+GGG + chr3_1:26145550-26145569 Msa0354550:CDS 40.0%
TAAAGATGGGGCAAACAAGA+AGG + chr3_1:26145562-26145581 Msa0354550:CDS 40.0%
AAAGATGGGGCAAACAAGAA+GGG + chr3_1:26145563-26145582 Msa0354550:CDS 40.0%
ATCAAGCAATTGAGCTCAAG+TGG + chr3_1:26145807-26145826 Msa0354550:three_prime_UTR 40.0%
CTCCGAAGATGAAGTCAGAA+GGG - chr3_1:26138753-26138772 None:intergenic 45.0%
ACTCCGAAGATGAAGTCAGA+AGG - chr3_1:26138754-26138773 None:intergenic 45.0%
AGGAACCTGATAAGCAGAAG+TGG - chr3_1:26138779-26138798 None:intergenic 45.0%
ATAGATGTTGGGTCACTGAG+GGG - chr3_1:26139026-26139045 None:intergenic 45.0%
GTATAGATGTTGGGTCACTG+AGG - chr3_1:26139028-26139047 None:intergenic 45.0%
TAGTCCCACCACCTATTCTA+TGG + chr3_1:26139288-26139307 Msa0354550:intron 45.0%
GGTACCATAGAATAGGTGGT+GGG - chr3_1:26139295-26139314 None:intergenic 45.0%
AGGTACCATAGAATAGGTGG+TGG - chr3_1:26139296-26139315 None:intergenic 45.0%
! ACGAGGTACCATAGAATAGG+TGG - chr3_1:26139299-26139318 None:intergenic 45.0%
!! GAGAGTGATGGTGATGGTTT+AGG + chr3_1:26139514-26139533 Msa0354550:intron 45.0%
!! GAGTGATGGTGATGGTTTAG+GGG + chr3_1:26139516-26139535 Msa0354550:intron 45.0%
AGGAACAGAAAACCGTGGAT+AGG - chr3_1:26140006-26140025 None:intergenic 45.0%
!! ATAGAAGGTGCTAGCAAGGA+GGG + chr3_1:26140200-26140219 Msa0354550:CDS 45.0%
GTGGTAGAGGTCCTAGTATA+TGG + chr3_1:26140222-26140241 Msa0354550:CDS 45.0%
GCATAGGCATCCCATATACT+AGG - chr3_1:26140236-26140255 None:intergenic 45.0%
ACTTGGTTGAGTCAGCTACA+TGG - chr3_1:26140497-26140516 None:intergenic 45.0%
CGCAGATATCTTTCCTCACT+TGG - chr3_1:26140514-26140533 None:intergenic 45.0%
CGTGCTCAAAAATAGACTCG+GGG - chr3_1:26140627-26140646 None:intergenic 45.0%
! TCTTGGTCTCGTATTTTCCC+TGG + chr3_1:26140827-26140846 Msa0354550:CDS 45.0%
TTCTAGGCTTAAGGCTCTCA+TGG - chr3_1:26140927-26140946 None:intergenic 45.0%
GGAGGAGCTGATAAACTTCT+AGG - chr3_1:26140943-26140962 None:intergenic 45.0%
!! TGACCAAGTATTGATGACGG+AGG - chr3_1:26140961-26140980 None:intergenic 45.0%
! TTTTCGTCTTACCGCCAGAT+AGG + chr3_1:26141168-26141187 Msa0354550:intron 45.0%
AATTGCACTCTCCTATCTGG+CGG - chr3_1:26141182-26141201 None:intergenic 45.0%
CACAGGCTTTACCATAGGAA+AGG + chr3_1:26141293-26141312 Msa0354550:intron 45.0%
! GGTAAAGGTTTGGAGCCATT+TGG - chr3_1:26141586-26141605 None:intergenic 45.0%
! CTCTGTAGTGTGAGAGTATG+GGG - chr3_1:26141691-26141710 None:intergenic 45.0%
CATCTTGATGAGTCAATGGG+AGG + chr3_1:26142127-26142146 Msa0354550:CDS 45.0%
TTGATGAGTCAATGGGAGGA+TGG + chr3_1:26142131-26142150 Msa0354550:CDS 45.0%
AATGGAAACAGCTGCTGCAT+GGG - chr3_1:26142686-26142705 None:intergenic 45.0%
AAATGGAAACAGCTGCTGCA+TGG - chr3_1:26142687-26142706 None:intergenic 45.0%
GATGTTCCAGGATAAGCAAG+GGG + chr3_1:26142920-26142939 Msa0354550:intron 45.0%
GCTGGTTGTAGACTCTGAAT+GGG + chr3_1:26142952-26142971 Msa0354550:CDS 45.0%
! ACCTAGATTTTCGTCTTGGC+TGG + chr3_1:26143023-26143042 Msa0354550:CDS 45.0%
ACCAGCCAAGACGAAAATCT+AGG - chr3_1:26143027-26143046 None:intergenic 45.0%
AGTCGTTCACGCATAACTTC+AGG - chr3_1:26143376-26143395 None:intergenic 45.0%
GAAGTTATGCGTGAACGACT+TGG + chr3_1:26143376-26143395 Msa0354550:CDS 45.0%
CCTCAGAGAATTTGGGAAGT+CGG - chr3_1:26143405-26143424 None:intergenic 45.0%
! ACTTCCCAAATTCTCTGAGG+AGG + chr3_1:26143405-26143424 Msa0354550:CDS 45.0%
TTCACAGTTGAATGGGAAGG+CGG + chr3_1:26143632-26143651 Msa0354550:intron 45.0%
TATAACAGGCAGCATCAGAG+TGG + chr3_1:26143769-26143788 Msa0354550:intron 45.0%
ATGTTGTTCCTTGGGGTCTT+CGG + chr3_1:26143796-26143815 Msa0354550:CDS 45.0%
ATAATCTTCCGAAGACCCCA+AGG - chr3_1:26143807-26143826 None:intergenic 45.0%
CCGATATATGTCACCGAGAA+TGG + chr3_1:26143855-26143874 Msa0354550:CDS 45.0%
TATGGCTCAACAAGGAAGAG+TGG + chr3_1:26144344-26144363 Msa0354550:intron 45.0%
CTGCAACCTAGGAATATGAC+TGG + chr3_1:26144388-26144407 Msa0354550:intron 45.0%
ACCTAGGAATATGACTGGCA+TGG + chr3_1:26144393-26144412 Msa0354550:intron 45.0%
ACTGCGAGTTCGCTATTACA+AGG + chr3_1:26144623-26144642 Msa0354550:CDS 45.0%
CTGCGAGTTCGCTATTACAA+GGG + chr3_1:26144624-26144643 Msa0354550:CDS 45.0%
ATACCTTGCATCACTTGTGC+AGG + chr3_1:26144647-26144666 Msa0354550:CDS 45.0%
TTAGAACAGGGTCAGACACT+TGG + chr3_1:26145150-26145169 Msa0354550:intron 45.0%
GGTCAGTTGTTATGTTAGGC+TGG - chr3_1:26145300-26145319 None:intergenic 45.0%
ATGTGAGAGGACACTTTGCA+TGG + chr3_1:26145414-26145433 Msa0354550:CDS 45.0%
! ATAGACCAATCCGAAGCGTT+TGG - chr3_1:26145477-26145496 None:intergenic 45.0%
!!! AAAACATATATATATTTTTT+TGG + chr3_1:26139401-26139420 Msa0354550:intron 5.0%
!!! AAACATATATATATTTTTTT+GGG + chr3_1:26139402-26139421 Msa0354550:intron 5.0%
!! AATAATTTAACATAAAAATT+AGG - chr3_1:26140026-26140045 None:intergenic 5.0%
AGTCGCCACTTCTGCTTATC+AGG + chr3_1:26138771-26138790 Msa0354550:CDS 50.0%
GTTGTGTGCAAGTGTGGGAT+CGG + chr3_1:26138866-26138885 Msa0354550:intron 50.0%
TGGTGTCTCTCTCGCTTATG+CGG + chr3_1:26138966-26138985 Msa0354550:intron 50.0%
TTCTCAGTGTCTCTCTGGCT+AGG + chr3_1:26139482-26139501 Msa0354550:intron 50.0%
TCTCAGTGTCTCTCTGGCTA+GGG + chr3_1:26139483-26139502 Msa0354550:intron 50.0%
AGGGGCGAAATTGAGAGTGA+TGG + chr3_1:26139502-26139521 Msa0354550:intron 50.0%
!! GATAGAAGGTGCTAGCAAGG+AGG + chr3_1:26140199-26140218 Msa0354550:intron 50.0%
! GTAGCTGACTCAACCAAGTG+AGG + chr3_1:26140498-26140517 Msa0354550:intron 50.0%
GTACGCGTTGAAACCCAACT+TGG - chr3_1:26140795-26140814 None:intergenic 50.0%
GCTTAAGGCTCTCATGGACA+TGG - chr3_1:26140921-26140940 None:intergenic 50.0%
GCTCCTCCGTCATCAATACT+TGG + chr3_1:26140955-26140974 Msa0354550:intron 50.0%
! TTTCTGGGAGGGAGTTACCT+TGG + chr3_1:26141054-26141073 Msa0354550:intron 50.0%
! GGTTTGGAGCCATTTGGCTT+GGG - chr3_1:26141580-26141599 None:intergenic 50.0%
! AGGTTTGGAGCCATTTGGCT+TGG - chr3_1:26141581-26141600 None:intergenic 50.0%
GATGCAGTGGAAGATCCCAA+TGG - chr3_1:26142111-26142130 None:intergenic 50.0%
AGCATCATACCCACCAACTG+CGG - chr3_1:26142590-26142609 None:intergenic 50.0%
GATGCTGGAGTTAATGCTCC+TGG + chr3_1:26142604-26142623 Msa0354550:CDS 50.0%
ACTTGTCCCCTTGCTTATCC+TGG - chr3_1:26142929-26142948 None:intergenic 50.0%
AGGATAAGCAAGGGGACAAG+TGG + chr3_1:26142928-26142947 Msa0354550:intron 50.0%
GGATAAGCAAGGGGACAAGT+GGG + chr3_1:26142929-26142948 Msa0354550:intron 50.0%
GATAAGCAAGGGGACAAGTG+GGG + chr3_1:26142930-26142949 Msa0354550:intron 50.0%
! GGCTGGTTGTAGACTCTGAA+TGG + chr3_1:26142951-26142970 Msa0354550:CDS 50.0%
CCGACTTCCCAAATTCTCTG+AGG + chr3_1:26143402-26143421 Msa0354550:CDS 50.0%
TCACAGTTGAATGGGAAGGC+GGG + chr3_1:26143633-26143652 Msa0354550:intron 50.0%
CACCGACAGAGAGACATAGA+TGG - chr3_1:26143684-26143703 None:intergenic 50.0%
GCCATGCCAGTCATATTCCT+AGG - chr3_1:26144397-26144416 None:intergenic 50.0%
TAGCCTGCACAAGTGATGCA+AGG - chr3_1:26144653-26144672 None:intergenic 50.0%
! GACAACTTCGAATGGGCTCA+AGG + chr3_1:26145446-26145465 Msa0354550:CDS 50.0%
TCTCGCTTATGCGGTTGCTC+TGG + chr3_1:26138975-26138994 Msa0354550:intron 55.0%
GGTTGCTCTGGCCTCAATGT+GGG + chr3_1:26138987-26139006 Msa0354550:intron 55.0%
GAGATAGCTCACGCTCTTGC+CGG + chr3_1:26139247-26139266 Msa0354550:intron 55.0%
AGATAGCTCACGCTCTTGCC+GGG + chr3_1:26139248-26139267 Msa0354550:intron 55.0%
CTCAGTGTCTCTCTGGCTAG+GGG + chr3_1:26139484-26139503 Msa0354550:intron 55.0%
! CCATCTTATCGGTTGGGCCA+AGG - chr3_1:26141074-26141093 None:intergenic 55.0%
CCTTGGCCCAACCGATAAGA+TGG + chr3_1:26141071-26141090 Msa0354550:intron 55.0%
!! CCATTTGGCTTGGGAGGTTC+CGG - chr3_1:26141571-26141590 None:intergenic 55.0%
!! TTGGAGCCATTTGGCTTGGG+AGG - chr3_1:26141577-26141596 None:intergenic 55.0%
CCACCAACTGCGGTTTGAAG+GGG - chr3_1:26142580-26142599 None:intergenic 55.0%
CCCACCAACTGCGGTTTGAA+GGG - chr3_1:26142581-26142600 None:intergenic 55.0%
CCCTTCAAACCGCAGTTGGT+GGG + chr3_1:26142578-26142597 Msa0354550:CDS 55.0%
ACCCACCAACTGCGGTTTGA+AGG - chr3_1:26142582-26142601 None:intergenic 55.0%
!! GCAGTTGGTGGGTATGATGC+TGG + chr3_1:26142589-26142608 Msa0354550:CDS 55.0%
ATCTAGGTGTCTCGCAGCAG+CGG - chr3_1:26143011-26143030 None:intergenic 55.0%
CACAGTTGAATGGGAAGGCG+GGG + chr3_1:26143634-26143653 Msa0354550:intron 55.0%
AGGGATGGAGCTGATGTGAG+AGG + chr3_1:26145401-26145420 Msa0354550:intron 55.0%
CGGTTGCTCTGGCCTCAATG+TGG + chr3_1:26138986-26139005 Msa0354550:intron 60.0%
TGCTCTGGCCTCAATGTGGG+CGG + chr3_1:26138990-26139009 Msa0354550:intron 60.0%
GATAGCTCACGCTCTTGCCG+GGG + chr3_1:26139249-26139268 Msa0354550:intron 60.0%
!! GGGTGTCGGAATTCGAACCC+CGG + chr3_1:26139424-26139443 Msa0354550:intron 60.0%
!! GAAGGTGCTAGCAAGGAGGG+TGG + chr3_1:26140203-26140222 Msa0354550:CDS 60.0%
GCTAGCAAGGAGGGTGGTAG+AGG + chr3_1:26140209-26140228 Msa0354550:CDS 60.0%
!! TTGGCTTGGGAGGTTCCGGA+TGG - chr3_1:26141567-26141586 None:intergenic 60.0%
CCGGAACCTCCCAAGCCAAA+TGG + chr3_1:26141568-26141587 Msa0354550:intron 60.0%
GAGCCCCTTCAAACCGCAGT+TGG + chr3_1:26142574-26142593 Msa0354550:CDS 60.0%
CCCCTTCAAACCGCAGTTGG+TGG + chr3_1:26142577-26142596 Msa0354550:CDS 60.0%
CGGGGAGCTCATTGGTGAGA+AGG + chr3_1:26143652-26143671 Msa0354550:CDS 60.0%
CCTCAATGTGGGCGGCTCCT+CGG + chr3_1:26138998-26139017 Msa0354550:intron 65.0%
AGCAAGGGGACAAGTGGGGC+TGG + chr3_1:26142934-26142953 Msa0354550:intron 65.0%
TGGGAAGGCGGGGAGCTCAT+TGG + chr3_1:26143644-26143663 Msa0354550:CDS 65.0%
CCGAGGAGCCGCCCACATTG+AGG - chr3_1:26139001-26139020 None:intergenic 70.0%
TGGGTCACTGAGGGGAGCCG+AGG - chr3_1:26139018-26139037 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 26138541 26145833 26138541 ID=Msa0354550;Name=Msa0354550
chr3_1 mRNA 26138541 26145833 26138541 ID=Msa0354550-mRNA-1;Parent=Msa0354550;Name=Msa0354550-mRNA-1;_AED=0.13;_eAED=0.13;_QI=132|0.91|0.84|1|1|1|13|238|486
chr3_1 exon 26138541 26138792 26138541 ID=Msa0354550-mRNA-1:exon:5745;Parent=Msa0354550-mRNA-1
chr3_1 exon 26140200 26140266 26140200 ID=Msa0354550-mRNA-1:exon:5746;Parent=Msa0354550-mRNA-1
chr3_1 exon 26140337 26140395 26140337 ID=Msa0354550-mRNA-1:exon:5747;Parent=Msa0354550-mRNA-1
chr3_1 exon 26140773 26140848 26140773 ID=Msa0354550-mRNA-1:exon:5748;Parent=Msa0354550-mRNA-1
chr3_1 exon 26141930 26142004 26141930 ID=Msa0354550-mRNA-1:exon:5749;Parent=Msa0354550-mRNA-1
chr3_1 exon 26142083 26142170 26142083 ID=Msa0354550-mRNA-1:exon:5750;Parent=Msa0354550-mRNA-1
chr3_1 exon 26142498 26142716 26142498 ID=Msa0354550-mRNA-1:exon:5751;Parent=Msa0354550-mRNA-1
chr3_1 exon 26142940 26143044 26142940 ID=Msa0354550-mRNA-1:exon:5752;Parent=Msa0354550-mRNA-1
chr3_1 exon 26143342 26143556 26143342 ID=Msa0354550-mRNA-1:exon:5753;Parent=Msa0354550-mRNA-1
chr3_1 exon 26143639 26143673 26143639 ID=Msa0354550-mRNA-1:exon:5754;Parent=Msa0354550-mRNA-1
chr3_1 exon 26143777 26143876 26143777 ID=Msa0354550-mRNA-1:exon:5755;Parent=Msa0354550-mRNA-1
chr3_1 exon 26144568 26144676 26144568 ID=Msa0354550-mRNA-1:exon:5756;Parent=Msa0354550-mRNA-1
chr3_1 exon 26145403 26145833 26145403 ID=Msa0354550-mRNA-1:exon:5757;Parent=Msa0354550-mRNA-1
chr3_1 five_prime_UTR 26138541 26138672 26138541 ID=Msa0354550-mRNA-1:five_prime_utr;Parent=Msa0354550-mRNA-1
chr3_1 CDS 26138673 26138792 26138673 ID=Msa0354550-mRNA-1:cds;Parent=Msa0354550-mRNA-1
chr3_1 CDS 26140200 26140266 26140200 ID=Msa0354550-mRNA-1:cds;Parent=Msa0354550-mRNA-1
chr3_1 CDS 26140337 26140395 26140337 ID=Msa0354550-mRNA-1:cds;Parent=Msa0354550-mRNA-1
chr3_1 CDS 26140773 26140848 26140773 ID=Msa0354550-mRNA-1:cds;Parent=Msa0354550-mRNA-1
chr3_1 CDS 26141930 26142004 26141930 ID=Msa0354550-mRNA-1:cds;Parent=Msa0354550-mRNA-1
chr3_1 CDS 26142083 26142170 26142083 ID=Msa0354550-mRNA-1:cds;Parent=Msa0354550-mRNA-1
chr3_1 CDS 26142498 26142716 26142498 ID=Msa0354550-mRNA-1:cds;Parent=Msa0354550-mRNA-1
chr3_1 CDS 26142940 26143044 26142940 ID=Msa0354550-mRNA-1:cds;Parent=Msa0354550-mRNA-1
chr3_1 CDS 26143342 26143556 26143342 ID=Msa0354550-mRNA-1:cds;Parent=Msa0354550-mRNA-1
chr3_1 CDS 26143639 26143673 26143639 ID=Msa0354550-mRNA-1:cds;Parent=Msa0354550-mRNA-1
chr3_1 CDS 26143777 26143876 26143777 ID=Msa0354550-mRNA-1:cds;Parent=Msa0354550-mRNA-1
chr3_1 CDS 26144568 26144676 26144568 ID=Msa0354550-mRNA-1:cds;Parent=Msa0354550-mRNA-1
chr3_1 CDS 26145403 26145595 26145403 ID=Msa0354550-mRNA-1:cds;Parent=Msa0354550-mRNA-1
chr3_1 three_prime_UTR 26145596 26145833 26145596 ID=Msa0354550-mRNA-1:three_prime_utr;Parent=Msa0354550-mRNA-1
Gene Sequence

>Msa0354550

ATGGTAAAGAAAGAAGAATTTCTGAGAGAAAATGGTTTTGAGAAAGAAGGACAAGAAGAAGTCTCACGCAGTGACTTCCCTTCTGACTTCATCTTCGGAGTCGCCACTTCTGCTTATCAGATAGAAGGTGCTAGCAAGGAGGGTGGTAGAGGTCCTAGTATATGGGATGCCTATGCTTATACTGAAGGAAAAATACTCGACAAAAGCAATGGCGATGTAGCAGTTGATCATTATCATCGTTATAAGGAAGATATTGATCTTATAGCCAAGTTGGGTTTCAACGCGTACAGATTTTCAATTTCTTGGTCTCGTATTTTCCCTGATGGCTTAGGAACCAATGTCAATGATGAAGGCATAACATTTTACAACAACATTATCAATGCTCTTCTTGAAAAAGGTATTCAACCTTTTGTAACTTTGTACCATTGGGATCTTCCACTGCATCTTGATGAGTCAATGGGAGGATGGTTGAATAAAAATATCATAGAATATTTTGCAGTCTATGCAGATACTTGCTTTGCAAGTTTTGGCGATAAAGTGAAAAACTGGATTACTATTAACGAGCCCCTTCAAACCGCAGTTGGTGGGTATGATGCTGGAGTTAATGCTCCTGGAAGAAGTCAAAATAGATCAGTAGAACCATACTTAGCAGCACATCATCAAATCTTGGCCCATGCAGCAGCTGTTTCCATTTACCGAAGCAAGGGACAAGTGGGGCTGGTTGTAGACTCTGAATGGGCAGAGCCAAACTCTGATAAGATTGAAGATAAATCCGCTGCTGCGAGACACCTAGATTTTCGTCTTGGCTGGTTCTTGCATCCACTATATTATGGAGACTATCCTGAAGTTATGCGTGAACGACTTGGAGACCGACTTCCCAAATTCTCTGAGGAGGATAAAATATTTCTTTTGAATTCTTTGGACTTCATTGGCCTAAATCACTATACAACGAGGTTAATTTCACATGTGACAGAAAGCACCGAAGAATGTCATTATGACAAGGCACAACAGCTGGACAGAATTGTTGAATGGGAAGGCGGGGAGCTCATTGGTGAGAAGGCAGCATCAGAGTGGCTATATGTTGTTCCTTGGGGTCTTCGGAAGATTATTAATTACATATCGCAAAAATATGCTGCACCGATATATGTCACCGAGAATGGTATGGATGATGAAGACAATGATAGCTTGCCACTAAATGAGATGCTAGATGACAAACTGCGAGTTCGCTATTACAAGGGATACCTTGCATCACTTGTGCAGGCTATAAAGGATGGAGCTGATGTGAGAGGACACTTTGCATGGTCATTACTTGACAACTTCGAATGGGCTCAAGGTTATACCAAACGCTTCGGATTGGTCTATGTAGATTACAAAAATGGACTCACTAGGCACCCAAAGTCTTCTGCATATTGGTTTTCGCGGTTTCTTAAAGATGGGGCAAACAAGAAGGGTAAAGAATAG
Protein sequence

>Msa0354550

MVKKEEFLRENGFEKEGQEEVSRSDFPSDFIFGVATSAYQIEGASKEGGRGPSIWDAYAYTEGKILDKSNGDVAVDHYHRYKEDIDLIAKLGFNAYRFSISWSRIFPDGLGTNVNDEGITFYNNIINALLEKGIQPFVTLYHWDLPLHLDESMGGWLNKNIIEYFAVYADTCFASFGDKVKNWITINEPLQTAVGGYDAGVNAPGRSQNRSVEPYLAAHHQILAHAAAVSIYRSKGQVGLVVDSEWAEPNSDKIEDKSAAARHLDFRLGWFLHPLYYGDYPEVMRERLGDRLPKFSEEDKIFLLNSLDFIGLNHYTTRLISHVTESTEECHYDKAQQLDRIVEWEGGELIGEKAASEWLYVVPWGLRKIINYISQKYAAPIYVTENGMDDEDNDSLPLNEMLDDKLRVRYYKGYLASLVQAIKDGADVRGHFAWSLLDNFEWAQGYTKRFGLVYVDYKNGLTRHPKSSAYWFSRFLKDGANKKGKE*