AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0898090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0898090 MtrunA17_Chr7g0233331 63.470 219 76 3 1 218 177 392 3.32e-81 248
Msa0898090 MtrunA17_Chr8g0366431 59.111 225 85 5 1 223 100 319 5.85e-79 241
Msa0898090 MtrunA17_Chr8g0361991 55.319 235 92 4 1 224 179 411 1.42e-77 241
Msa0898090 MtrunA17_Chr8g0369921 59.912 227 86 4 1 226 178 400 1.22e-76 238
Msa0898090 MtrunA17_Chr3g0083331 54.582 251 95 4 1 235 178 425 2.84e-75 234
Msa0898090 MtrunA17_Chr8g0353311 56.140 228 97 3 1 226 182 408 1.27e-70 222
Msa0898090 MtrunA17_Chr7g0221531 55.804 224 86 4 1 220 177 391 5.12e-70 220
Msa0898090 MtrunA17_Chr3g0093531 53.648 233 94 7 1 226 127 352 4.51e-68 214
Msa0898090 MtrunA17_Chr8g0364031 57.205 229 84 5 1 226 178 395 1.01e-66 212
Msa0898090 MtrunA17_Chr8g0354071 52.586 232 96 7 2 226 128 352 1.11e-66 210
Msa0898090 MtrunA17_Chr8g0370361 52.889 225 101 3 1 225 179 398 1.06e-64 207
Msa0898090 MtrunA17_Chr8g0367671 51.515 231 101 7 1 226 180 404 9.69e-64 204
Msa0898090 MtrunA17_Chr1g0178581 48.444 225 112 3 1 224 180 401 1.34e-55 183
Msa0898090 MtrunA17_Chr8g0368621 62.143 140 49 3 1 139 175 311 6.17e-46 155
Msa0898090 MtrunA17_Chr3g0136651 34.764 233 112 7 2 224 174 376 3.54e-31 119
Msa0898090 MtrunA17_Chr8g0370371 44.526 137 69 4 93 225 2 135 2.43e-27 103
Msa0898090 MtrunA17_Chr1g0182721 31.387 137 82 3 101 228 73 206 4.82e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0898090 AT4G10720.1 30.417 240 139 7 1 229 173 395 4.52e-25 102
Msa0898090 AT1G14500.1 28.099 242 142 6 2 233 174 393 5.04e-20 88.6
Msa0898090 AT1G14480.1 24.691 243 156 4 1 233 173 398 1.47e-19 87.0
Msa0898090 AT5G15500.1 28.947 228 144 5 1 223 72 286 2.18e-19 85.9
Msa0898090 AT5G15500.2 29.075 227 145 5 1 223 178 392 6.04e-19 85.5
Msa0898090 AT4G10720.2 29.442 197 116 4 1 189 173 354 1.24e-18 84.3
Msa0898090 AT5G54620.1 31.863 204 103 7 2 196 174 350 2.28e-15 75.1
Msa0898090 AT1G14480.2 23.500 200 127 3 43 233 173 355 2.05e-13 69.3
Msa0898090 AT5G51160.1 28.311 219 120 8 5 193 146 357 1.92e-11 63.5
Msa0898090 AT5G54610.1 32.331 133 77 5 5 128 175 303 3.87e-11 62.8
Msa0898090 AT4G11000.1 30.682 176 94 6 30 193 2 161 6.69e-11 60.8

Find 46 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTGCTATCTATATTCTA+TGG 0.199715 6_1:-90818579 Msa0898090:CDS
CTAACCCCAACTGGGATAAT+AGG 0.331029 6_1:-90818638 Msa0898090:CDS
ACGGATTTCCCAGCATTTCC+TGG 0.345494 6_1:+90818740 None:intergenic
CAAAGGACAAACAAAATTAC+TGG 0.362816 6_1:+90818596 None:intergenic
AAACAAAAGGAAATCATATT+CGG 0.401003 6_1:+90818683 None:intergenic
ATAGTTTGTCTAACCCCAAC+TGG 0.417293 6_1:-90818647 Msa0898090:CDS
GACCGCCTATTATCCCAGTT+GGG 0.419656 6_1:+90818633 None:intergenic
CTTTGCTATCTATATTCTAT+GGG 0.427911 6_1:-90818578 Msa0898090:CDS
ATTATTACCCCAGGAAATGC+TGG 0.431985 6_1:-90818749 Msa0898090:CDS
GGGGCTCACTACTGATTGAT+AGG 0.440215 6_1:+90818838 None:intergenic
AAAGACTTGTATAAATTTGA+AGG 0.440941 6_1:-90819113 Msa0898090:CDS
CTTTAGAAGAAATATATTAG+AGG 0.452706 6_1:-90818909 Msa0898090:CDS
CGGATTTCCCAGCATTTCCT+GGG 0.461411 6_1:+90818741 None:intergenic
GGTAATAATAGTAGAATTTG+AGG 0.463196 6_1:+90818763 None:intergenic
TGCTATAATTGATAAACAAA+AGG 0.463546 6_1:+90818670 None:intergenic
GAATTGGCGTGTTGGCAATA+CGG 0.471808 6_1:+90818721 None:intergenic
TCGATACGAATGATGGATGC+AGG 0.485164 6_1:+90818545 None:intergenic
AAGAAAATATTATTAAATGT+TGG 0.492021 6_1:-90819037 Msa0898090:CDS
GGTAGCATAGACTCGATTGT+TGG 0.507317 6_1:-90819137 Msa0898090:intron
AGAATTAATAAGTGAACCAC+AGG 0.512346 6_1:-90819734 Msa0898090:intron
AGACCGCCTATTATCCCAGT+TGG 0.521623 6_1:+90818632 None:intergenic
TACACCGTCGATACGAATGA+TGG 0.528172 6_1:+90818538 None:intergenic
GTATCACTGACTTCTGAGGC+AGG 0.546924 6_1:+90819007 None:intergenic
TTAGACATTGCAACTACAGC+AGG 0.553641 6_1:-90819064 Msa0898090:CDS
AATTCTACTATTATTACCCC+AGG 0.568581 6_1:-90818758 Msa0898090:CDS
CTAAATCAGAAGGATGAGGC+AGG 0.569601 6_1:-90819781 Msa0898090:CDS
TTAGCCTGATAAACTCCACC+AGG 0.571244 6_1:+90818815 None:intergenic
TAGAGGAGCAACGTAACACT+TGG 0.572878 6_1:-90818892 Msa0898090:CDS
TCTTAGTCTATCTGCAAGTG+TGG 0.575281 6_1:+90818982 None:intergenic
AAACAAAATACTAAATCAGA+AGG 0.579530 6_1:-90819791 Msa0898090:CDS
AATACTAAATCAGAAGGATG+AGG 0.585811 6_1:-90819785 Msa0898090:CDS
ACCGCCTATTATCCCAGTTG+GGG 0.588488 6_1:+90818634 None:intergenic
CGATACGAATGATGGATGCA+GGG 0.600568 6_1:+90818546 None:intergenic
TTATTACCCCAGGAAATGCT+GGG 0.603046 6_1:-90818748 Msa0898090:CDS
CTTAGTCTATCTGCAAGTGT+GGG 0.615195 6_1:+90818983 None:intergenic
GCATCCATCATTCGTATCGA+CGG 0.619566 6_1:-90818542 Msa0898090:CDS
GGGAGTATCACTGACTTCTG+AGG 0.643167 6_1:+90819003 None:intergenic
TAGTTTGTCTAACCCCAACT+GGG 0.646288 6_1:-90818646 Msa0898090:CDS
GCCTGATAAACTCCACCAGG+GGG 0.647842 6_1:+90818818 None:intergenic
AGCCTGATAAACTCCACCAG+GGG 0.665796 6_1:+90818817 None:intergenic
CCATAGAATATAGATAGCAA+AGG 0.666546 6_1:+90818579 None:intergenic
GGATTTCCCAGCATTTCCTG+GGG 0.671158 6_1:+90818742 None:intergenic
ACCCCAACTGGGATAATAGG+CGG 0.675508 6_1:-90818635 Msa0898090:CDS
GATACGAATGATGGATGCAG+GGG 0.679796 6_1:+90818547 None:intergenic
TAGCCTGATAAACTCCACCA+GGG 0.682940 6_1:+90818816 None:intergenic
CCTGATAAACTCCACCAGGG+GGG 0.741917 6_1:+90818819 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTATTTATGATTACT+TGG - chr6_1:90819155-90819174 Msa0898090:intron 10.0%
!! AAGAAAATATTATTAAATGT+TGG - chr6_1:90819276-90819295 Msa0898090:intron 10.0%
!! TTTATTTATTTATGATTACT+TGG - chr6_1:90819155-90819174 Msa0898090:intron 10.0%
!! AAGAAAATATTATTAAATGT+TGG - chr6_1:90819276-90819295 Msa0898090:intron 10.0%
!! AAACAAAATACTAAATCAGA+AGG - chr6_1:90818522-90818541 Msa0898090:CDS 20.0%
!! AAAGACTTGTATAAATTTGA+AGG - chr6_1:90819200-90819219 Msa0898090:intron 20.0%
!!! CTTTAGAAGAAATATATTAG+AGG - chr6_1:90819404-90819423 Msa0898090:intron 20.0%
!! AAACAAAAGGAAATCATATT+CGG + chr6_1:90819633-90819652 None:intergenic 20.0%
!! TGCTATAATTGATAAACAAA+AGG + chr6_1:90819646-90819665 None:intergenic 20.0%
!! AAACAAAATACTAAATCAGA+AGG - chr6_1:90818522-90818541 Msa0898090:CDS 20.0%
!! AAAGACTTGTATAAATTTGA+AGG - chr6_1:90819200-90819219 Msa0898090:intron 20.0%
!!! CTTTAGAAGAAATATATTAG+AGG - chr6_1:90819404-90819423 Msa0898090:intron 20.0%
!! AAACAAAAGGAAATCATATT+CGG + chr6_1:90819633-90819652 None:intergenic 20.0%
!! TGCTATAATTGATAAACAAA+AGG + chr6_1:90819646-90819665 None:intergenic 20.0%
! TAATCTAATGTCATTGTACA+AGG + chr6_1:90818608-90818627 None:intergenic 25.0%
!!! TGTTGTTTTCTAATATGTGA+GGG + chr6_1:90818662-90818681 None:intergenic 25.0%
! TATTAGAAAACAACACATCA+AGG - chr6_1:90818667-90818686 Msa0898090:CDS 25.0%
!! GCTAATTCTTTACTTTAAAG+TGG + chr6_1:90818768-90818787 None:intergenic 25.0%
! AATAGTACATTGAAAATACG+TGG - chr6_1:90819017-90819036 Msa0898090:CDS 25.0%
!! TTTTGTTACAAAATACAACG+TGG - chr6_1:90819050-90819069 Msa0898090:CDS 25.0%
! AAATTTGAAGGCAAAAAACT+TGG - chr6_1:90819212-90819231 Msa0898090:intron 25.0%
! GGTAATAATAGTAGAATTTG+AGG + chr6_1:90819553-90819572 None:intergenic 25.0%
! GAGTTGAAAAAAAAAGGAAT+TGG + chr6_1:90819611-90819630 None:intergenic 25.0%
! TATTCGGAGTTGAAAAAAAA+AGG + chr6_1:90819617-90819636 None:intergenic 25.0%
!! CTTTGCTATCTATATTCTAT+GGG - chr6_1:90819735-90819754 Msa0898090:CDS 25.0%
! TAATCTAATGTCATTGTACA+AGG + chr6_1:90818608-90818627 None:intergenic 25.0%
!!! TGTTGTTTTCTAATATGTGA+GGG + chr6_1:90818662-90818681 None:intergenic 25.0%
! TATTAGAAAACAACACATCA+AGG - chr6_1:90818667-90818686 Msa0898090:CDS 25.0%
!! GCTAATTCTTTACTTTAAAG+TGG + chr6_1:90818768-90818787 None:intergenic 25.0%
! AATAGTACATTGAAAATACG+TGG - chr6_1:90819017-90819036 Msa0898090:CDS 25.0%
!! TTTTGTTACAAAATACAACG+TGG - chr6_1:90819050-90819069 Msa0898090:CDS 25.0%
! AAATTTGAAGGCAAAAAACT+TGG - chr6_1:90819212-90819231 Msa0898090:intron 25.0%
! GGTAATAATAGTAGAATTTG+AGG + chr6_1:90819553-90819572 None:intergenic 25.0%
! GAGTTGAAAAAAAAAGGAAT+TGG + chr6_1:90819611-90819630 None:intergenic 25.0%
! TATTCGGAGTTGAAAAAAAA+AGG + chr6_1:90819617-90819636 None:intergenic 25.0%
!! CTTTGCTATCTATATTCTAT+GGG - chr6_1:90819735-90819754 Msa0898090:CDS 25.0%
AATACTAAATCAGAAGGATG+AGG - chr6_1:90818528-90818547 Msa0898090:CDS 30.0%
AGAATTAATAAGTGAACCAC+AGG - chr6_1:90818579-90818598 Msa0898090:CDS 30.0%
!! GTTGTTTTCTAATATGTGAG+GGG + chr6_1:90818661-90818680 None:intergenic 30.0%
!!! GTGTTGTTTTCTAATATGTG+AGG + chr6_1:90818663-90818682 None:intergenic 30.0%
AAACACTTTGTAAATGACTC+TGG - chr6_1:90818695-90818714 Msa0898090:CDS 30.0%
TTTAGTCACTGAATTCCAAA+TGG - chr6_1:90818734-90818753 Msa0898090:CDS 30.0%
CATGAACGTTCTCTAATAAA+TGG - chr6_1:90819126-90819145 Msa0898090:CDS 30.0%
AATTCTACTATTATTACCCC+AGG - chr6_1:90819555-90819574 Msa0898090:intron 30.0%
CAAAGGACAAACAAAATTAC+TGG + chr6_1:90819720-90819739 None:intergenic 30.0%
CCATAGAATATAGATAGCAA+AGG + chr6_1:90819737-90819756 None:intergenic 30.0%
! CCTTTGCTATCTATATTCTA+TGG - chr6_1:90819734-90819753 Msa0898090:intron 30.0%
AATACTAAATCAGAAGGATG+AGG - chr6_1:90818528-90818547 Msa0898090:CDS 30.0%
AGAATTAATAAGTGAACCAC+AGG - chr6_1:90818579-90818598 Msa0898090:CDS 30.0%
!! GTTGTTTTCTAATATGTGAG+GGG + chr6_1:90818661-90818680 None:intergenic 30.0%
!!! GTGTTGTTTTCTAATATGTG+AGG + chr6_1:90818663-90818682 None:intergenic 30.0%
AAACACTTTGTAAATGACTC+TGG - chr6_1:90818695-90818714 Msa0898090:CDS 30.0%
TTTAGTCACTGAATTCCAAA+TGG - chr6_1:90818734-90818753 Msa0898090:CDS 30.0%
CATGAACGTTCTCTAATAAA+TGG - chr6_1:90819126-90819145 Msa0898090:CDS 30.0%
AATTCTACTATTATTACCCC+AGG - chr6_1:90819555-90819574 Msa0898090:intron 30.0%
CAAAGGACAAACAAAATTAC+TGG + chr6_1:90819720-90819739 None:intergenic 30.0%
CCATAGAATATAGATAGCAA+AGG + chr6_1:90819737-90819756 None:intergenic 30.0%
! CCTTTGCTATCTATATTCTA+TGG - chr6_1:90819734-90819753 Msa0898090:intron 30.0%
! TGTCACATTTTCTTGTATCG+TGG + chr6_1:90819370-90819389 None:intergenic 35.0%
AAAAAAAGGAATTGGCGTGT+TGG + chr6_1:90819603-90819622 None:intergenic 35.0%
! TGTCACATTTTCTTGTATCG+TGG + chr6_1:90819370-90819389 None:intergenic 35.0%
AAAAAAAGGAATTGGCGTGT+TGG + chr6_1:90819603-90819622 None:intergenic 35.0%
TCATTGTACAAGGTTACCTG+TGG + chr6_1:90818598-90818617 None:intergenic 40.0%
AAAGTGGTCTGCATTCCATT+TGG + chr6_1:90818752-90818771 None:intergenic 40.0%
TTAGACATTGCAACTACAGC+AGG - chr6_1:90819249-90819268 Msa0898090:intron 40.0%
CTTAGTCTATCTGCAAGTGT+GGG + chr6_1:90819333-90819352 None:intergenic 40.0%
TCTTAGTCTATCTGCAAGTG+TGG + chr6_1:90819334-90819353 None:intergenic 40.0%
ATTATTACCCCAGGAAATGC+TGG - chr6_1:90819564-90819583 Msa0898090:intron 40.0%
TTATTACCCCAGGAAATGCT+GGG - chr6_1:90819565-90819584 Msa0898090:intron 40.0%
! ATAGTTTGTCTAACCCCAAC+TGG - chr6_1:90819666-90819685 Msa0898090:intron 40.0%
! TAGTTTGTCTAACCCCAACT+GGG - chr6_1:90819667-90819686 Msa0898090:intron 40.0%
!! CGTATCGACGGTGTATTTTT+AGG - chr6_1:90819783-90819802 Msa0898090:CDS 40.0%
!!! ATCGACGGTGTATTTTTAGG+TGG - chr6_1:90819786-90819805 Msa0898090:CDS 40.0%
TCATTGTACAAGGTTACCTG+TGG + chr6_1:90818598-90818617 None:intergenic 40.0%
AAAGTGGTCTGCATTCCATT+TGG + chr6_1:90818752-90818771 None:intergenic 40.0%
TTAGACATTGCAACTACAGC+AGG - chr6_1:90819249-90819268 Msa0898090:intron 40.0%
CTTAGTCTATCTGCAAGTGT+GGG + chr6_1:90819333-90819352 None:intergenic 40.0%
TCTTAGTCTATCTGCAAGTG+TGG + chr6_1:90819334-90819353 None:intergenic 40.0%
ATTATTACCCCAGGAAATGC+TGG - chr6_1:90819564-90819583 Msa0898090:intron 40.0%
TTATTACCCCAGGAAATGCT+GGG - chr6_1:90819565-90819584 Msa0898090:intron 40.0%
! ATAGTTTGTCTAACCCCAAC+TGG - chr6_1:90819666-90819685 Msa0898090:intron 40.0%
! TAGTTTGTCTAACCCCAACT+GGG - chr6_1:90819667-90819686 Msa0898090:intron 40.0%
!! CGTATCGACGGTGTATTTTT+AGG - chr6_1:90819783-90819802 Msa0898090:CDS 40.0%
!!! ATCGACGGTGTATTTTTAGG+TGG - chr6_1:90819786-90819805 Msa0898090:CDS 40.0%
CTAAATCAGAAGGATGAGGC+AGG - chr6_1:90818532-90818551 Msa0898090:CDS 45.0%
GGTAGCATAGACTCGATTGT+TGG - chr6_1:90819176-90819195 Msa0898090:intron 45.0%
TAGAGGAGCAACGTAACACT+TGG - chr6_1:90819421-90819440 Msa0898090:intron 45.0%
TAGCCTGATAAACTCCACCA+GGG + chr6_1:90819500-90819519 None:intergenic 45.0%
TTAGCCTGATAAACTCCACC+AGG + chr6_1:90819501-90819520 None:intergenic 45.0%
! GAATTGGCGTGTTGGCAATA+CGG + chr6_1:90819595-90819614 None:intergenic 45.0%
CTAACCCCAACTGGGATAAT+AGG - chr6_1:90819675-90819694 Msa0898090:intron 45.0%
!! GATACGAATGATGGATGCAG+GGG + chr6_1:90819769-90819788 None:intergenic 45.0%
!! CGATACGAATGATGGATGCA+GGG + chr6_1:90819770-90819789 None:intergenic 45.0%
!! TCGATACGAATGATGGATGC+AGG + chr6_1:90819771-90819790 None:intergenic 45.0%
GCATCCATCATTCGTATCGA+CGG - chr6_1:90819771-90819790 Msa0898090:CDS 45.0%
TACACCGTCGATACGAATGA+TGG + chr6_1:90819778-90819797 None:intergenic 45.0%
CTAAATCAGAAGGATGAGGC+AGG - chr6_1:90818532-90818551 Msa0898090:CDS 45.0%
GGTAGCATAGACTCGATTGT+TGG - chr6_1:90819176-90819195 Msa0898090:intron 45.0%
TAGAGGAGCAACGTAACACT+TGG - chr6_1:90819421-90819440 Msa0898090:intron 45.0%
TAGCCTGATAAACTCCACCA+GGG + chr6_1:90819500-90819519 None:intergenic 45.0%
TTAGCCTGATAAACTCCACC+AGG + chr6_1:90819501-90819520 None:intergenic 45.0%
! GAATTGGCGTGTTGGCAATA+CGG + chr6_1:90819595-90819614 None:intergenic 45.0%
CTAACCCCAACTGGGATAAT+AGG - chr6_1:90819675-90819694 Msa0898090:intron 45.0%
!! GATACGAATGATGGATGCAG+GGG + chr6_1:90819769-90819788 None:intergenic 45.0%
!! CGATACGAATGATGGATGCA+GGG + chr6_1:90819770-90819789 None:intergenic 45.0%
!! TCGATACGAATGATGGATGC+AGG + chr6_1:90819771-90819790 None:intergenic 45.0%
GCATCCATCATTCGTATCGA+CGG - chr6_1:90819771-90819790 Msa0898090:CDS 45.0%
TACACCGTCGATACGAATGA+TGG + chr6_1:90819778-90819797 None:intergenic 45.0%
!! GTATCACTGACTTCTGAGGC+AGG + chr6_1:90819309-90819328 None:intergenic 50.0%
!! GGGAGTATCACTGACTTCTG+AGG + chr6_1:90819313-90819332 None:intergenic 50.0%
! GGGGCTCACTACTGATTGAT+AGG + chr6_1:90819478-90819497 None:intergenic 50.0%
AGCCTGATAAACTCCACCAG+GGG + chr6_1:90819499-90819518 None:intergenic 50.0%
GGATTTCCCAGCATTTCCTG+GGG + chr6_1:90819574-90819593 None:intergenic 50.0%
CGGATTTCCCAGCATTTCCT+GGG + chr6_1:90819575-90819594 None:intergenic 50.0%
ACGGATTTCCCAGCATTTCC+TGG + chr6_1:90819576-90819595 None:intergenic 50.0%
ACCCCAACTGGGATAATAGG+CGG - chr6_1:90819678-90819697 Msa0898090:intron 50.0%
ACCGCCTATTATCCCAGTTG+GGG + chr6_1:90819682-90819701 None:intergenic 50.0%
GACCGCCTATTATCCCAGTT+GGG + chr6_1:90819683-90819702 None:intergenic 50.0%
AGACCGCCTATTATCCCAGT+TGG + chr6_1:90819684-90819703 None:intergenic 50.0%
!! GTATCACTGACTTCTGAGGC+AGG + chr6_1:90819309-90819328 None:intergenic 50.0%
!! GGGAGTATCACTGACTTCTG+AGG + chr6_1:90819313-90819332 None:intergenic 50.0%
! GGGGCTCACTACTGATTGAT+AGG + chr6_1:90819478-90819497 None:intergenic 50.0%
AGCCTGATAAACTCCACCAG+GGG + chr6_1:90819499-90819518 None:intergenic 50.0%
GGATTTCCCAGCATTTCCTG+GGG + chr6_1:90819574-90819593 None:intergenic 50.0%
CGGATTTCCCAGCATTTCCT+GGG + chr6_1:90819575-90819594 None:intergenic 50.0%
ACGGATTTCCCAGCATTTCC+TGG + chr6_1:90819576-90819595 None:intergenic 50.0%
ACCCCAACTGGGATAATAGG+CGG - chr6_1:90819678-90819697 Msa0898090:intron 50.0%
ACCGCCTATTATCCCAGTTG+GGG + chr6_1:90819682-90819701 None:intergenic 50.0%
GACCGCCTATTATCCCAGTT+GGG + chr6_1:90819683-90819702 None:intergenic 50.0%
AGACCGCCTATTATCCCAGT+TGG + chr6_1:90819684-90819703 None:intergenic 50.0%
CCTGATAAACTCCACCAGGG+GGG + chr6_1:90819497-90819516 None:intergenic 55.0%
GCCTGATAAACTCCACCAGG+GGG + chr6_1:90819498-90819517 None:intergenic 55.0%
CCTGATAAACTCCACCAGGG+GGG + chr6_1:90819497-90819516 None:intergenic 55.0%
GCCTGATAAACTCCACCAGG+GGG + chr6_1:90819498-90819517 None:intergenic 55.0%
CAATCAGTAGTGAGCCCCCC+TGG - chr6_1:90819480-90819499 Msa0898090:intron 60.0%
CCCCCCTGGTGGAGTTTATC+AGG - chr6_1:90819494-90819513 Msa0898090:intron 60.0%
CAATCAGTAGTGAGCCCCCC+TGG - chr6_1:90819480-90819499 Msa0898090:intron 60.0%
CCCCCCTGGTGGAGTTTATC+AGG - chr6_1:90819494-90819513 Msa0898090:intron 60.0%
TCAGTAGTGAGCCCCCCTGG+TGG - chr6_1:90819483-90819502 Msa0898090:intron 65.0%
TCAGTAGTGAGCCCCCCTGG+TGG - chr6_1:90819483-90819502 Msa0898090:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 90818517 90819818 90818517 ID=Msa0898090;Name=Msa0898090
chr6_1 mRNA 90818517 90819818 90818517 ID=Msa0898090-mRNA-1;Parent=Msa0898090;Name=Msa0898090-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|1|0|0|2|0|238
chr6_1 exon 90819735 90819818 90819735 ID=Msa0898090-mRNA-1:exon:15483;Parent=Msa0898090-mRNA-1
chr6_1 exon 90818517 90819149 90818517 ID=Msa0898090-mRNA-1:exon:15482;Parent=Msa0898090-mRNA-1
chr6_1 CDS 90819735 90819818 90819735 ID=Msa0898090-mRNA-1:cds;Parent=Msa0898090-mRNA-1
chr6_1 CDS 90818517 90819149 90818517 ID=Msa0898090-mRNA-1:cds;Parent=Msa0898090-mRNA-1
Gene Sequence

>Msa0898090

CTGGAAAACAAAATACTAAATCAGAAGGATGAGGCAGGCAATACTATATTGCACATTTCAGCAGAATTAATAAGTGAACCACAGACTCGATTGTTGGTAAAGACTTGTATAAATTTGAAGGCAAAAAACTTGGAGAACAAAACAGCATTAGACATTGCAACTACAGCAGGAATCAAGAAAATATTATTAAATGTTGGAGCGAAACCTGCCTCAGAAGTCAGTGATACTCCCACACTTGCAGATAGACTAAGATTAAGATCAAACACCACGATACAAGAAAATGTGACAATTTTTATGAGTCGCTTTAGAAGAAATATATTAGAGGAGCAACGTAACACTTGGTTGATAATTGCGACTCTTGTTGCGACTGCAACCTATCAATCAGTAGTGAGCCCCCCTGGTGGAGTTTATCAGGCTAATGCTAGTGACAATACTGTGAACATCACTTCCTCAAATTCTACTATTATTACCCCAGGAAATGCTGGGAAATCCGTATTGCCAACACGCCAATTCCTTTTTTTTTCAACTCCGAATATGATTTCCTTTTGTTTATCAATTATAGCAATAGTTTGTCTAACCCCAACTGGGATAATAGGCGGTCTATTAGTGTGCATTCCAGTAATTTTGTTTGTCCTTTGCTATCTATATTCTATGGGTATTATTTCCCCTGCATCCATCATTCGTATCGACGGTGTATTTTTAGGTGGAGTACTGTAG

Protein sequence

>Msa0898090

LENKILNQKDEAGNTILHISAELISEPQTRLLVKTCINLKAKNLENKTALDIATTAGIKKILLNVGAKPASEVSDTPTLADRLRLRSNTTIQENVTIFMSRFRRNILEEQRNTWLIIATLVATATYQSVVSPPGGVYQANASDNTVNITSSNSTIITPGNAGKSVLPTRQFLFFSTPNMISFCLSIIAIVCLTPTGIIGGLLVCIPVILFVLCYLYSMGIISPASIIRIDGVFLGGVL*