AlfalfaGEDB | Msa0898090

M. sativa cultivar zhongmu-4 / Msa0898090

KEGG: -
GO: -
PFAM: PF13962.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0898090	XP_024625306.1	63.470	219	76	3	1	218	177	392	3.61e-77	248

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0898090	A0A396GZH4	63.470	219	76	3	1	218	177	392	1.72e-77	248

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0898090	0.838620	2.581628e-57	-8.615850e-47
Msa0001040	Msa0898090	0.821593	3.718530e-53	-8.615850e-47
Msa0002690	Msa0898090	0.833879	4.139113e-56	-8.615850e-47
Msa0002700	Msa0898090	0.839549	1.482398e-57	-8.615850e-47
Msa0007570	Msa0898090	0.831234	1.874147e-55	-8.615850e-47
Msa0007810	Msa0898090	0.822111	2.821040e-53	-8.615850e-47
Msa0011060	Msa0898090	0.841853	3.692546e-58	-8.615850e-47
Msa0011100	Msa0898090	0.830995	2.145002e-55	-8.615850e-47
Msa0011920	Msa0898090	0.814785	1.290800e-51	-8.615850e-47
Msa0015220	Msa0898090	0.800820	1.204628e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0898090	MtrunA17_Chr7g0233331	63.470	219	76	3	1	218	177	392	3.32e-81	248
Msa0898090	MtrunA17_Chr8g0366431	59.111	225	85	5	1	223	100	319	5.85e-79	241
Msa0898090	MtrunA17_Chr8g0361991	55.319	235	92	4	1	224	179	411	1.42e-77	241
Msa0898090	MtrunA17_Chr8g0369921	59.912	227	86	4	1	226	178	400	1.22e-76	238
Msa0898090	MtrunA17_Chr3g0083331	54.582	251	95	4	1	235	178	425	2.84e-75	234
Msa0898090	MtrunA17_Chr8g0353311	56.140	228	97	3	1	226	182	408	1.27e-70	222
Msa0898090	MtrunA17_Chr7g0221531	55.804	224	86	4	1	220	177	391	5.12e-70	220
Msa0898090	MtrunA17_Chr3g0093531	53.648	233	94	7	1	226	127	352	4.51e-68	214
Msa0898090	MtrunA17_Chr8g0364031	57.205	229	84	5	1	226	178	395	1.01e-66	212
Msa0898090	MtrunA17_Chr8g0354071	52.586	232	96	7	2	226	128	352	1.11e-66	210

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0898090	AT4G10720.1	30.417	240	139	7	1	229	173	395	4.52e-25	102
Msa0898090	AT1G14500.1	28.099	242	142	6	2	233	174	393	5.04e-20	88.6
Msa0898090	AT1G14480.1	24.691	243	156	4	1	233	173	398	1.47e-19	87.0
Msa0898090	AT5G15500.1	28.947	228	144	5	1	223	72	286	2.18e-19	85.9
Msa0898090	AT5G15500.2	29.075	227	145	5	1	223	178	392	6.04e-19	85.5
Msa0898090	AT4G10720.2	29.442	197	116	4	1	189	173	354	1.24e-18	84.3
Msa0898090	AT5G54620.1	31.863	204	103	7	2	196	174	350	2.28e-15	75.1
Msa0898090	AT1G14480.2	23.500	200	127	3	43	233	173	355	2.05e-13	69.3
Msa0898090	AT5G51160.1	28.311	219	120	8	5	193	146	357	1.92e-11	63.5
Msa0898090	AT5G54610.1	32.331	133	77	5	5	128	175	303	3.87e-11	62.8

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Find 46 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAAGGAAATCATATT+CGG	0.401003	6_1:+90818683	None:intergenic
AAACAAAATACTAAATCAGA+AGG	0.579530	6_1:-90819791	Msa0898090:CDS
AAAGACTTGTATAAATTTGA+AGG	0.440941	6_1:-90819113	Msa0898090:CDS
AAGAAAATATTATTAAATGT+TGG	0.492021	6_1:-90819037	Msa0898090:CDS
AATACTAAATCAGAAGGATG+AGG	0.585811	6_1:-90819785	Msa0898090:CDS
AATTCTACTATTATTACCCC+AGG	0.568581	6_1:-90818758	Msa0898090:CDS
ACCCCAACTGGGATAATAGG+CGG	0.675508	6_1:-90818635	Msa0898090:CDS
ACCGCCTATTATCCCAGTTG+GGG	0.588488	6_1:+90818634	None:intergenic
ACGGATTTCCCAGCATTTCC+TGG	0.345494	6_1:+90818740	None:intergenic
AGAATTAATAAGTGAACCAC+AGG	0.512346	6_1:-90819734	Msa0898090:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATACTAAATCAGAAGGATG+AGG	-	chr6_1:90818528-90818547	Msa0898090:CDS	30.0%
AGAATTAATAAGTGAACCAC+AGG	-	chr6_1:90818579-90818598	Msa0898090:CDS	30.0%
AAACACTTTGTAAATGACTC+TGG	-	chr6_1:90818695-90818714	Msa0898090:CDS	30.0%
TTTAGTCACTGAATTCCAAA+TGG	-	chr6_1:90818734-90818753	Msa0898090:CDS	30.0%
CATGAACGTTCTCTAATAAA+TGG	-	chr6_1:90819126-90819145	Msa0898090:CDS	30.0%
AATTCTACTATTATTACCCC+AGG	-	chr6_1:90819555-90819574	Msa0898090:intron	30.0%
CAAAGGACAAACAAAATTAC+TGG	+	chr6_1:90819720-90819739	None:intergenic	30.0%
CCATAGAATATAGATAGCAA+AGG	+	chr6_1:90819737-90819756	None:intergenic	30.0%
AATACTAAATCAGAAGGATG+AGG	-	chr6_1:90818528-90818547	Msa0898090:CDS	30.0%
AGAATTAATAAGTGAACCAC+AGG	-	chr6_1:90818579-90818598	Msa0898090:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	90818517	90819818	90818517	ID=Msa0898090;Name=Msa0898090
chr6_1	mRNA	90818517	90819818	90818517	ID=Msa0898090-mRNA-1;Parent=Msa0898090;Name=Msa0898090-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0\|0\|0\|1\|0\|0\|2\|0\|238
chr6_1	exon	90819735	90819818	90819735	ID=Msa0898090-mRNA-1:exon:15483;Parent=Msa0898090-mRNA-1
chr6_1	exon	90818517	90819149	90818517	ID=Msa0898090-mRNA-1:exon:15482;Parent=Msa0898090-mRNA-1
chr6_1	CDS	90819735	90819818	90819735	ID=Msa0898090-mRNA-1:cds;Parent=Msa0898090-mRNA-1
chr6_1	CDS	90818517	90819149	90818517	ID=Msa0898090-mRNA-1:cds;Parent=Msa0898090-mRNA-1

Gene Sequence

>Msa0898090

CTGGAAAACAAAATACTAAATCAGAAGGATGAGGCAGGCAATACTATATTGCACATTTCAGCAGAATTAATAAGTGAACCACAGACTCGATTGTTGGTAAAGACTTGTATAAATTTGAAGGCAAAAAACTTGGAGAACAAAACAGCATTAGACATTGCAACTACAGCAGGAATCAAGAAAATATTATTAAATGTTGGAGCGAAACCTGCCTCAGAAGTCAGTGATACTCCCACACTTGCAGATAGACTAAGATTAAGATCAAACACCACGATACAAGAAAATGTGACAATTTTTATGAGTCGCTTTAGAAGAAATATATTAGAGGAGCAACGTAACACTTGGTTGATAATTGCGACTCTTGTTGCGACTGCAACCTATCAATCAGTAGTGAGCCCCCCTGGTGGAGTTTATCAGGCTAATGCTAGTGACAATACTGTGAACATCACTTCCTCAAATTCTACTATTATTACCCCAGGAAATGCTGGGAAATCCGTATTGCCAACACGCCAATTCCTTTTTTTTTCAACTCCGAATATGATTTCCTTTTGTTTATCAATTATAGCAATAGTTTGTCTAACCCCAACTGGGATAATAGGCGGTCTATTAGTGTGCATTCCAGTAATTTTGTTTGTCCTTTGCTATCTATATTCTATGGGTATTATTTCCCCTGCATCCATCATTCGTATCGACGGTGTATTTTTAGGTGGAGTACTGTAG

Protein sequence

>Msa0898090

LENKILNQKDEAGNTILHISAELISEPQTRLLVKTCINLKAKNLENKTALDIATTAGIKKILLNVGAKPASEVSDTPTLADRLRLRSNTTIQENVTIFMSRFRRNILEEQRNTWLIIATLVATATYQSVVSPPGGVYQANASDNTVNITSSNSTIITPGNAGKSVLPTRQFLFFSTPNMISFCLSIIAIVCLTPTGIIGGLLVCIPVILFVLCYLYSMGIISPASIIRIDGVFLGGVL*