AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0575970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0575970 MtrunA17_Chr8g0393271 84.751 341 5 2 1 294 1 341 0.0 578
Msa0575970 MtrunA17_Chr8g0375761 56.347 323 94 4 17 294 6 326 7.97e-127 364
Msa0575970 MtrunA17_Chr6g0479451 57.419 310 87 3 28 294 24 331 3.77e-123 355
Msa0575970 MtrunA17_Chr8g0375821 53.571 308 100 1 29 293 66 373 4.06e-113 331
Msa0575970 MtrunA17_Chr8g0375781 50.938 320 114 1 17 293 17 336 8.28e-112 327
Msa0575970 MtrunA17_Chr8g0375791 62.431 181 66 1 29 209 29 207 4.06e-75 233
Msa0575970 MtrunA17_Chr8g0375901 43.231 229 84 5 71 293 1 189 3.94e-50 164
Msa0575970 MtrunA17_Chr8g0375921 54.839 93 42 0 201 293 70 162 8.49e-32 115
Msa0575970 MtrunA17_Chr8g0375811 57.353 68 28 1 226 293 7 73 2.91e-19 80.1
Msa0575970 MtrunA17_Chr8g0375891 73.077 52 14 0 71 122 47 98 1.01e-17 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0575970 AT1G14700.1 57.190 306 86 3 21 282 48 352 5.55e-124 358
Msa0575970 AT1G14700.2 56.536 306 86 4 21 282 48 350 8.67e-121 350
Msa0575970 AT2G01890.1 54.426 305 95 2 21 282 19 322 2.43e-116 338
Msa0575970 AT1G25230.1 54.605 304 94 2 30 290 29 331 6.79e-116 337
Msa0575970 AT1G25230.3 54.605 304 94 2 30 290 52 354 2.06e-115 337
Msa0575970 AT3G17790.1 50.000 332 118 5 5 290 4 333 8.51e-111 324
Msa0575970 AT2G01880.1 54.305 302 93 3 32 289 24 324 1.12e-109 321
Msa0575970 AT1G14700.3 57.422 256 65 2 71 282 1 256 3.70e-102 300
Msa0575970 AT2G01890.2 49.508 305 82 3 21 282 19 294 8.21e-98 290
Msa0575970 AT1G25230.2 53.612 263 79 1 71 290 1 263 3.24e-97 287
Msa0575970 AT1G14700.4 56.504 246 63 2 21 223 48 292 6.14e-96 285
Msa0575970 AT2G01890.3 54.902 255 72 1 71 282 1 255 2.77e-95 282

Find 109 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTAGTGTAGTGCCTTTC+TGG 0.121670 4_1:-79982507 Msa0575970:five_prime_UTR
CATAAATACATTCATAATTA+AGG 0.210733 4_1:+79980553 None:intergenic
CACACAACACAGATGTAAAT+TGG 0.249033 4_1:+79982378 None:intergenic
CAATCATACTTGTGATCCTT+TGG 0.285376 4_1:+79981609 None:intergenic
CAACATAACATGGGTGGTTT+AGG 0.292659 4_1:-79982438 Msa0575970:exon
TATATAAACAAATTATGAAT+TGG 0.295940 4_1:+79980227 None:intergenic
AGTGTAGTGCCTTTCTGGTT+GGG 0.319142 4_1:-79982502 Msa0575970:five_prime_UTR
TTCAAAATATTGATCATAGA+TGG 0.323098 4_1:-79981817 Msa0575970:CDS
CCAGCTTGTATTGTAATTGT+AGG 0.332907 4_1:+79982616 None:intergenic
GAGTGAAAACTTTAGGATAT+TGG 0.345509 4_1:-79980432 Msa0575970:three_prime_UTR
AACCAATGGTATGAGATATA+TGG 0.347609 4_1:+79982731 None:intergenic
ATAAGCGCAGAAGCGTTCTT+TGG 0.349354 4_1:+79980513 None:intergenic
ACACTTAGCTTCCTCGTCAT+TGG 0.364659 4_1:-79982291 Msa0575970:CDS
CATGTACATATCAACATTGT+TGG 0.378981 4_1:+79981025 None:intergenic
GTTTGATAAATATTTCTTCC+TGG 0.379352 4_1:+79981572 None:intergenic
CACTGTAGCTGAATATTTAC+CGG 0.388676 4_1:-79980326 Msa0575970:three_prime_UTR
TTGAGGAAAATTGTGAAATC+TGG 0.389818 4_1:-79980600 Msa0575970:three_prime_UTR
ATCTTGTTATCAATCCCTAT+TGG 0.392673 4_1:-79982682 Msa0575970:five_prime_UTR
TTCCTCAACTTATTTAGATC+AGG 0.397410 4_1:+79980615 None:intergenic
GCTACATCAATCATGGGAAT+TGG 0.401591 4_1:+79980459 None:intergenic
GCTTCCTCGTCATTGGAGAC+TGG 0.404371 4_1:-79982284 Msa0575970:CDS
AGCTGAAGAGTGAAAACTTT+AGG 0.417205 4_1:-79980439 Msa0575970:three_prime_UTR
CTCTTCAGCTACATCAATCA+TGG 0.419608 4_1:+79980452 None:intergenic
ATATAAACAAATTATGAATT+GGG 0.424356 4_1:+79980228 None:intergenic
GATTGCCGAGCTCTTCTTCG+TGG 0.425033 4_1:-79981667 Msa0575970:CDS
CAAGTTAAACATTGACTTTG+TGG 0.429435 4_1:-79982110 Msa0575970:CDS
TTAAAATTAATAAAATCATA+TGG 0.442708 4_1:-79980393 Msa0575970:three_prime_UTR
TACATTATGCGATATAAGTA+AGG 0.442744 4_1:-79980664 Msa0575970:exon
ATTGACTTTGTGGTATCAAC+CGG 0.442770 4_1:-79982100 Msa0575970:CDS
GTGTAGTGCCTTTCTGGTTG+GGG 0.448235 4_1:-79982501 Msa0575970:five_prime_UTR
TAGTGTAGTGCCTTTCTGGT+TGG 0.450968 4_1:-79982503 Msa0575970:five_prime_UTR
GAGAAGGAATATTGAAAAGC+AGG 0.451116 4_1:+79982037 None:intergenic
CAAAGGATCACAAGTATGAT+TGG 0.454103 4_1:-79981608 Msa0575970:CDS
CTTCCTCGTCATTGGAGACT+GGG 0.458606 4_1:-79982283 Msa0575970:CDS
TTCAGCTACAGTGCAGTGTA+TGG 0.463765 4_1:+79980336 None:intergenic
ATATTGGTACATATAAATAT+AGG 0.469836 4_1:-79980416 Msa0575970:three_prime_UTR
ATATTTATCAAACCTCTTGA+AGG 0.471888 4_1:-79981562 Msa0575970:intron
AGAAAGTACTTGTCCACAAA+AGG 0.472357 4_1:+79981636 None:intergenic
TTTGATAAATATTTCTTCCT+GGG 0.475526 4_1:+79981573 None:intergenic
GAAGCCATGCGTTTGATCTC+CGG 0.479900 4_1:+79980307 None:intergenic
GTGGCATCTGCTTTGACAGC+AGG 0.480379 4_1:+79982312 None:intergenic
CCTGAAAAGCAACTTGAGAC+TGG 0.496595 4_1:+79982241 None:intergenic
TATATATAAGAAGTTGTGTT+GGG 0.498905 4_1:+79982552 None:intergenic
AATGTTGATATGTACATGAA+TGG 0.499703 4_1:-79981020 Msa0575970:CDS
AGCAACTTGAGACTGGTTGT+AGG 0.500595 4_1:+79982248 None:intergenic
GAATGGGCACGACCACTGCT+TGG 0.505736 4_1:-79981003 Msa0575970:CDS
CAACATCTCCTCTGTAGTCA+TGG 0.506496 4_1:+79981861 None:intergenic
TTCTATGACGATGGATTGAC+TGG 0.514825 4_1:-79982070 Msa0575970:CDS
TGATAACAAGATGGATGGAA+AGG 0.515973 4_1:+79982693 None:intergenic
TATCGCATAATGTAACTCCT+TGG 0.517717 4_1:+79980673 None:intergenic
ATTGGAGAGGTGTACTTCCC+AGG 0.523199 4_1:-79981590 Msa0575970:CDS
CAGTTCTTGACTAGTGGTGG+AGG 0.524399 4_1:-79980854 Msa0575970:CDS
TGTCAAATCCGCATCTAAAG+AGG 0.529916 4_1:-79980640 Msa0575970:three_prime_UTR
AATATCGTAATAGACAACTT+TGG 0.533584 4_1:+79980727 None:intergenic
GACTAGTGGTGGAGGCTCAA+AGG 0.536931 4_1:-79980846 Msa0575970:CDS
TGCCATATATCTCATACCAT+TGG 0.537657 4_1:-79982733 Msa0575970:five_prime_UTR
CTTGTCCATTATTGACTCCA+CGG 0.537915 4_1:-79982767 None:intergenic
TACAACACAACAACATAACA+TGG 0.538531 4_1:-79982448 Msa0575970:exon
GGGATTGATAACAAGATGGA+TGG 0.540448 4_1:+79982688 None:intergenic
CAGATGTAAATTGGAATCCA+TGG 0.540833 4_1:+79982387 None:intergenic
CAGCAGGGTGCTCAATGCGT+TGG 0.541284 4_1:+79982328 None:intergenic
ATGTTGATATGTACATGAAT+GGG 0.543838 4_1:-79981019 Msa0575970:CDS
ATATATATAAGAAGTTGTGT+TGG 0.544090 4_1:+79982551 None:intergenic
AAATTGGAATCCATGGCCAC+AGG 0.544307 4_1:+79982394 None:intergenic
GATAACAAGATGGATGGAAA+GGG 0.549414 4_1:+79982694 None:intergenic
GGAGACAATTTCTATGACGA+TGG 0.555932 4_1:-79982079 Msa0575970:CDS
AATTGGAATCCATGGCCACA+GGG 0.558266 4_1:+79982395 None:intergenic
TGGCATCTGCTTTGACAGCA+GGG 0.559566 4_1:+79982313 None:intergenic
ATTGGAGACTGGGGAAGGAA+AGG 0.574215 4_1:-79982273 Msa0575970:CDS
ATCAGGACCCTCTTTAGATG+CGG 0.574714 4_1:+79980632 None:intergenic
GTGGTGGAGGCTCAAAGGCA+TGG 0.574843 4_1:-79980841 Msa0575970:CDS
TACTTATGTGTTCCAAGCAG+TGG 0.576046 4_1:+79980991 None:intergenic
AACACATAAGTAGCACGGAC+AGG 0.579071 4_1:-79980980 Msa0575970:intron
ATCGTCATAGAAATTGTCTC+CGG 0.579752 4_1:+79982081 None:intergenic
AACCAGAAAGGCACTACACT+AGG 0.581631 4_1:+79982505 None:intergenic
GCTCAACAGACATAAATCCT+TGG 0.581775 4_1:+79980765 None:intergenic
GTCCTGATCTAAATAAGTTG+AGG 0.582273 4_1:-79980617 Msa0575970:three_prime_UTR
ATAATAGACCCCAACCAGAA+AGG 0.583089 4_1:+79982493 None:intergenic
CACATGCAGTTCTTGACTAG+TGG 0.586138 4_1:-79980860 Msa0575970:CDS
ATGCAGTTCTTGACTAGTGG+TGG 0.590078 4_1:-79980857 Msa0575970:CDS
AATAGGGATTGATAACAAGA+TGG 0.591800 4_1:+79982684 None:intergenic
GAGACTTAACTACCTTCAAG+AGG 0.592693 4_1:+79981550 None:intergenic
CAAGCAAGAATATGAACCAA+TGG 0.597490 4_1:+79982717 None:intergenic
TGTTGATATCATTATAACAA+AGG 0.597794 4_1:+79980577 None:intergenic
TCGTCATTGGAGACTGGGGA+AGG 0.599769 4_1:-79982278 Msa0575970:CDS
TGTATCCACGAAGAAGAGCT+CGG 0.607733 4_1:+79981662 None:intergenic
TCTTCAGCTACATCAATCAT+GGG 0.610082 4_1:+79980453 None:intergenic
GGAGGCTCAAAGGCATGGAA+AGG 0.610802 4_1:-79980836 Msa0575970:CDS
AGAAGGAATATTGAAAAGCA+GGG 0.612677 4_1:+79982038 None:intergenic
CTACAGTGCAGTGTATGGAA+AGG 0.618957 4_1:+79980341 None:intergenic
GTCAAATCCGCATCTAAAGA+GGG 0.620588 4_1:-79980639 Msa0575970:three_prime_UTR
GGCGGTGTAGATATCTGAGA+AGG 0.631188 4_1:+79982021 None:intergenic
TATATATTGAAGAGAAACCA+TGG 0.631434 4_1:-79980210 Msa0575970:three_prime_UTR
CAAGTACTTTCTCAAGCCAA+AGG 0.638020 4_1:-79981625 Msa0575970:CDS
TTTACCGGAGATCAAACGCA+TGG 0.638708 4_1:-79980311 Msa0575970:three_prime_UTR
CACTAGTCAAGAACTGCATG+TGG 0.640187 4_1:+79980861 None:intergenic
TTGGAATCCATGGCCACAGG+GGG 0.651995 4_1:+79982397 None:intergenic
ACACAACAACATAACATGGG+TGG 0.658211 4_1:-79982444 Msa0575970:exon
ACTGGAATATATCGATACCA+TGG 0.658532 4_1:+79980193 None:intergenic
CTTGGAACACATAAGTAGCA+CGG 0.662651 4_1:-79980985 Msa0575970:CDS
ACAACACAACAACATAACAT+GGG 0.663500 4_1:-79982447 Msa0575970:exon
TTCCTCGTCATTGGAGACTG+GGG 0.664337 4_1:-79982282 Msa0575970:CDS
GATCACAAGTATGATTGGAG+AGG 0.668923 4_1:-79981603 Msa0575970:CDS
TTCCCCAGTCTCCAATGACG+AGG 0.673800 4_1:+79982280 None:intergenic
ATTGTCTATATATGACTCTG+TGG 0.681054 4_1:-79980492 Msa0575970:three_prime_UTR
AATGACGAGGAAGCTAAGTG+TGG 0.707391 4_1:+79982293 None:intergenic
TTGGGCAACCATGACTACAG+AGG 0.718174 4_1:-79981869 Msa0575970:CDS
ATTGGAATCCATGGCCACAG+GGG 0.738974 4_1:+79982396 None:intergenic
ATGGCATGCATCATTCACCG+TGG 0.763567 4_1:+79982750 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAAATAAAAATTCAGA+TGG - chr4_1:79980738-79980757 Msa0575970:CDS 10.0%
!! ATTAAAATAAAAATTCAGAT+GGG - chr4_1:79980739-79980758 Msa0575970:CDS 10.0%
!! ATATAAACAAATTATGAATT+GGG + chr4_1:79982659-79982678 None:intergenic 10.0%
!! TATATAAACAAATTATGAAT+TGG + chr4_1:79982660-79982679 None:intergenic 10.0%
!!! CATATTTCATTTTAAAATGA+GGG + chr4_1:79981835-79981854 None:intergenic 15.0%
!! TATGTTACCTTAATTTAAAT+TGG - chr4_1:79981935-79981954 Msa0575970:intron 15.0%
!! CATAAATACATTCATAATTA+AGG + chr4_1:79982334-79982353 None:intergenic 15.0%
!! ATATTGGTACATATAAATAT+AGG - chr4_1:79982468-79982487 Msa0575970:five_prime_UTR 15.0%
!!! TTACTTTTAATTCATAAAAC+TGG + chr4_1:79982712-79982731 None:intergenic 15.0%
!!! TTTTATGAATTAAAAGAGTT+GGG - chr4_1:79982746-79982765 Msa0575970:five_prime_UTR 15.0%
!! TATATATAAGAAGTTGTGTT+GGG + chr4_1:79980335-79980354 None:intergenic 20.0%
!! ATATATATAAGAAGTTGTGT+TGG + chr4_1:79980336-79980355 None:intergenic 20.0%
!! TGTAAAAAAACTTGTCTTAA+AGG + chr4_1:79980699-79980718 None:intergenic 20.0%
!!! GATCAATATTTTGAAGAAAT+GGG + chr4_1:79981062-79981081 None:intergenic 20.0%
!!! TGATCAATATTTTGAAGAAA+TGG + chr4_1:79981063-79981082 None:intergenic 20.0%
!! TTCAAAATATTGATCATAGA+TGG - chr4_1:79981067-79981086 Msa0575970:intron 20.0%
!! TGATAAGTTAGAATAATGAA+TGG + chr4_1:79981129-79981148 None:intergenic 20.0%
!! TTTGATAAATATTTCTTCCT+GGG + chr4_1:79981314-79981333 None:intergenic 20.0%
!!! AGGACAGTATTTTTTTAATT+GGG + chr4_1:79981764-79981783 None:intergenic 20.0%
!!! TAGGACAGTATTTTTTTAAT+TGG + chr4_1:79981765-79981784 None:intergenic 20.0%
!!! GCATATTTCATTTTAAAATG+AGG + chr4_1:79981836-79981855 None:intergenic 20.0%
!!! CATTTTAAAATGAAATATGC+AGG - chr4_1:79981836-79981855 Msa0575970:CDS 20.0%
!! TGTTGATATCATTATAACAA+AGG + chr4_1:79982310-79982329 None:intergenic 20.0%
!!! ATTTATGTTTTGAAAACTTC+TGG - chr4_1:79982347-79982366 Msa0575970:CDS 20.0%
!!! GTTTTATGAATTAAAAGAGT+TGG - chr4_1:79982745-79982764 Msa0575970:five_prime_UTR 20.0%
! AAACTTGTCTTAAAGGAATT+TGG + chr4_1:79980692-79980711 None:intergenic 25.0%
!!! CATTATACCATTGTTTTTGA+AGG + chr4_1:79980894-79980913 None:intergenic 25.0%
! CTTCAAAAACAATGGTATAA+TGG - chr4_1:79980892-79980911 Msa0575970:intron 25.0%
! AATTAGAAGAGTGAATGAAA+AGG + chr4_1:79980947-79980966 None:intergenic 25.0%
! TGTGAACAAAAAAAGATCTT+TGG + chr4_1:79981098-79981117 None:intergenic 25.0%
! GTTTGATAAATATTTCTTCC+TGG + chr4_1:79981315-79981334 None:intergenic 25.0%
! ATATTTATCAAACCTCTTGA+AGG - chr4_1:79981322-79981341 Msa0575970:intron 25.0%
! TCTTAATAATTTCTGTGATG+AGG + chr4_1:79981359-79981378 None:intergenic 25.0%
! AACTAGCACTCAAATTAAAA+AGG - chr4_1:79981575-79981594 Msa0575970:CDS 25.0%
! ACTAGCACTCAAATTAAAAA+GGG - chr4_1:79981576-79981595 Msa0575970:CDS 25.0%
!! TGACTTAAAATTTCCACTTT+TGG - chr4_1:79981699-79981718 Msa0575970:intron 25.0%
! TCCTACTAGTTATAAAGATA+AGG - chr4_1:79981780-79981799 Msa0575970:intron 25.0%
! ACCTTATCTTTATAACTAGT+AGG + chr4_1:79981784-79981803 None:intergenic 25.0%
! GGATGTTTATCAGTAAATAA+AGG + chr4_1:79981814-79981833 None:intergenic 25.0%
! AATGTTGATATGTACATGAA+TGG - chr4_1:79981864-79981883 Msa0575970:CDS 25.0%
! ATGTTGATATGTACATGAAT+GGG - chr4_1:79981865-79981884 Msa0575970:CDS 25.0%
! AGCAAGTCCAATTTAAATTA+AGG + chr4_1:79981945-79981964 None:intergenic 25.0%
! AAAACCACTCAATTTCATTA+AGG + chr4_1:79981999-79982018 None:intergenic 25.0%
! TTGATAAAAATAGGAGAGAT+GGG - chr4_1:79982076-79982095 Msa0575970:CDS 25.0%
! AATATCGTAATAGACAACTT+TGG + chr4_1:79982160-79982179 None:intergenic 25.0%
!! GTTGTCTATTACGATATTTT+TGG - chr4_1:79982162-79982181 Msa0575970:intron 25.0%
! TACATTATGCGATATAAGTA+AGG - chr4_1:79982220-79982239 Msa0575970:intron 25.0%
! TATATATTGAAGAGAAACCA+TGG - chr4_1:79982674-79982693 Msa0575970:five_prime_UTR 25.0%
AACCAATGGTATGAGATATA+TGG + chr4_1:79980156-79980175 None:intergenic 30.0%
! AATAGGGATTGATAACAAGA+TGG + chr4_1:79980203-79980222 None:intergenic 30.0%
! ATCTTGTTATCAATCCCTAT+TGG - chr4_1:79980202-79980221 Msa0575970:three_prime_UTR 30.0%
GAAAAATGTTGTAGCCAATA+GGG + chr4_1:79980219-79980238 None:intergenic 30.0%
AGAAAAATGTTGTAGCCAAT+AGG + chr4_1:79980220-79980239 None:intergenic 30.0%
TACAATACAAGCTGGATTAA+TGG - chr4_1:79980276-79980295 Msa0575970:three_prime_UTR 30.0%
TACAACACAACAACATAACA+TGG - chr4_1:79980436-79980455 Msa0575970:three_prime_UTR 30.0%
ACAACACAACAACATAACAT+GGG - chr4_1:79980437-79980456 Msa0575970:three_prime_UTR 30.0%
!! CAAGTTAAACATTGACTTTG+TGG - chr4_1:79980774-79980793 Msa0575970:CDS 30.0%
AGAAGGAATATTGAAAAGCA+GGG + chr4_1:79980849-79980868 None:intergenic 30.0%
!!! AGATCTTTTTTTGTTCACAC+TGG - chr4_1:79981099-79981118 Msa0575970:intron 30.0%
TAAAAAGGGAAATGTTAACC+CGG - chr4_1:79981590-79981609 Msa0575970:CDS 30.0%
CATGTACATATCAACATTGT+TGG + chr4_1:79981862-79981881 None:intergenic 30.0%
ATCACCTTAATGAAATTGAG+TGG - chr4_1:79981992-79982011 Msa0575970:intron 30.0%
! AAGGAGACGTTGATAAAAAT+AGG - chr4_1:79982067-79982086 Msa0575970:CDS 30.0%
! GTTGATAAAAATAGGAGAGA+TGG - chr4_1:79982075-79982094 Msa0575970:CDS 30.0%
TGATAAAAATAGGAGAGATG+GGG - chr4_1:79982077-79982096 Msa0575970:CDS 30.0%
TTCCTCAACTTATTTAGATC+AGG + chr4_1:79982272-79982291 None:intergenic 30.0%
TTGAGGAAAATTGTGAAATC+TGG - chr4_1:79982284-79982303 Msa0575970:CDS 30.0%
ATTGTCTATATATGACTCTG+TGG - chr4_1:79982392-79982411 Msa0575970:CDS 30.0%
!! GAGTGAAAACTTTAGGATAT+TGG - chr4_1:79982452-79982471 Msa0575970:five_prime_UTR 30.0%
TGCCATATATCTCATACCAT+TGG - chr4_1:79980151-79980170 Msa0575970:three_prime_UTR 35.0%
CAAGCAAGAATATGAACCAA+TGG + chr4_1:79980170-79980189 None:intergenic 35.0%
GATAACAAGATGGATGGAAA+GGG + chr4_1:79980193-79980212 None:intergenic 35.0%
TGATAACAAGATGGATGGAA+AGG + chr4_1:79980194-79980213 None:intergenic 35.0%
CCAGCTTGTATTGTAATTGT+AGG + chr4_1:79980271-79980290 None:intergenic 35.0%
CCTACAATTACAATACAAGC+TGG - chr4_1:79980268-79980287 Msa0575970:three_prime_UTR 35.0%
CAGATGTAAATTGGAATCCA+TGG + chr4_1:79980500-79980519 None:intergenic 35.0%
CACACAACACAGATGTAAAT+TGG + chr4_1:79980509-79980528 None:intergenic 35.0%
AAAAATTCAGATGGGAAGAG+TGG - chr4_1:79980747-79980766 Msa0575970:CDS 35.0%
! ATTGACTTTGTGGTATCAAC+CGG - chr4_1:79980784-79980803 Msa0575970:CDS 35.0%
ATCGTCATAGAAATTGTCTC+CGG + chr4_1:79980806-79980825 None:intergenic 35.0%
GAGAAGGAATATTGAAAAGC+AGG + chr4_1:79980850-79980869 None:intergenic 35.0%
!!! GATCTGCTTGTTTTAGTGTT+GGG - chr4_1:79980997-79981016 Msa0575970:CDS 35.0%
TGAATGATTATGCGGAGATA+GGG + chr4_1:79981165-79981184 None:intergenic 35.0%
TATCTCCGCATAATCATTCA+CGG - chr4_1:79981165-79981184 Msa0575970:intron 35.0%
AAGAACCGTGAATGATTATG+CGG + chr4_1:79981173-79981192 None:intergenic 35.0%
!! AGAAAGTACTTGTCCACAAA+AGG + chr4_1:79981251-79981270 None:intergenic 35.0%
CAATCATACTTGTGATCCTT+TGG + chr4_1:79981278-79981297 None:intergenic 35.0%
CAAAGGATCACAAGTATGAT+TGG - chr4_1:79981276-79981295 Msa0575970:intron 35.0%
ATGTGTGTGATTCTAAACGA+AGG - chr4_1:79981408-79981427 Msa0575970:intron 35.0%
TAAGAGATTCAACTTCCAAG+TGG - chr4_1:79981446-79981465 Msa0575970:intron 35.0%
! ATCATCCATTGAGAAGCATA+GGG - chr4_1:79981485-79981504 Msa0575970:intron 35.0%
TAATGAGTGACCTCAAGAAT+TGG + chr4_1:79981550-79981569 None:intergenic 35.0%
AAAAAGGGAAATGTTAACCC+GGG - chr4_1:79981591-79981610 Msa0575970:CDS 35.0%
!! GCATGTTTTGAATCTATCCA+AGG - chr4_1:79982194-79982213 Msa0575970:intron 35.0%
TATCGCATAATGTAACTCCT+TGG + chr4_1:79982214-79982233 None:intergenic 35.0%
GTCCTGATCTAAATAAGTTG+AGG - chr4_1:79982267-79982286 Msa0575970:CDS 35.0%
TCTTCAGCTACATCAATCAT+GGG + chr4_1:79982434-79982453 None:intergenic 35.0%
AGCTGAAGAGTGAAAACTTT+AGG - chr4_1:79982445-79982464 Msa0575970:exon 35.0%
CACTGTAGCTGAATATTTAC+CGG - chr4_1:79982558-79982577 Msa0575970:five_prime_UTR 35.0%
ACTGGAATATATCGATACCA+TGG + chr4_1:79982694-79982713 None:intergenic 35.0%
! GGGATTGATAACAAGATGGA+TGG + chr4_1:79980199-79980218 None:intergenic 40.0%
ATAATAGACCCCAACCAGAA+AGG + chr4_1:79980394-79980413 None:intergenic 40.0%
ACACAACAACATAACATGGG+TGG - chr4_1:79980440-79980459 Msa0575970:three_prime_UTR 40.0%
CAACATAACATGGGTGGTTT+AGG - chr4_1:79980446-79980465 Msa0575970:three_prime_UTR 40.0%
GGAGACAATTTCTATGACGA+TGG - chr4_1:79980805-79980824 Msa0575970:CDS 40.0%
!! TTCTATGACGATGGATTGAC+TGG - chr4_1:79980814-79980833 Msa0575970:CDS 40.0%
!!! TTGTTTTTGAAGGCTGTTGG+CGG + chr4_1:79980884-79980903 None:intergenic 40.0%
!!! CCATTGTTTTTGAAGGCTGT+TGG + chr4_1:79980887-79980906 None:intergenic 40.0%
CCAACAGCCTTCAAAAACAA+TGG - chr4_1:79980884-79980903 Msa0575970:intron 40.0%
!!! CGATCTGCTTGTTTTAGTGT+TGG - chr4_1:79980996-79981015 Msa0575970:CDS 40.0%
GAATGATTATGCGGAGATAG+GGG + chr4_1:79981164-79981183 None:intergenic 40.0%
GTGAATGATTATGCGGAGAT+AGG + chr4_1:79981166-79981185 None:intergenic 40.0%
CAAGTACTTTCTCAAGCCAA+AGG - chr4_1:79981259-79981278 Msa0575970:intron 40.0%
GATCACAAGTATGATTGGAG+AGG - chr4_1:79981281-79981300 Msa0575970:intron 40.0%
GAGACTTAACTACCTTCAAG+AGG + chr4_1:79981337-79981356 None:intergenic 40.0%
!! AATCTCTTAGTGCTGTTTCC+AGG + chr4_1:79981435-79981454 None:intergenic 40.0%
TTCCAAGTGGAAGATTGTTG+TGG - chr4_1:79981459-79981478 Msa0575970:intron 40.0%
TCCAAGTGGAAGATTGTTGT+GGG - chr4_1:79981460-79981479 Msa0575970:intron 40.0%
! CATCATCCATTGAGAAGCAT+AGG - chr4_1:79981484-79981503 Msa0575970:intron 40.0%
AAAAGGGAAATGTTAACCCG+GGG - chr4_1:79981592-79981611 Msa0575970:CDS 40.0%
TACTTATGTGTTCCAAGCAG+TGG + chr4_1:79981896-79981915 None:intergenic 40.0%
CTTGGAACACATAAGTAGCA+CGG - chr4_1:79981899-79981918 Msa0575970:intron 40.0%
! GGGGTCAAGTTTTACTATGA+CGG - chr4_1:79982096-79982115 Msa0575970:CDS 40.0%
! AAGTTTTACTATGACGGCCA+AGG - chr4_1:79982102-79982121 Msa0575970:CDS 40.0%
GCTCAACAGACATAAATCCT+TGG + chr4_1:79982122-79982141 None:intergenic 40.0%
TGTCAAATCCGCATCTAAAG+AGG - chr4_1:79982244-79982263 Msa0575970:CDS 40.0%
GTCAAATCCGCATCTAAAGA+GGG - chr4_1:79982245-79982264 Msa0575970:CDS 40.0%
GCTACATCAATCATGGGAAT+TGG + chr4_1:79982428-79982447 None:intergenic 40.0%
CTCTTCAGCTACATCAATCA+TGG + chr4_1:79982435-79982454 None:intergenic 40.0%
TACCTAGTGTAGTGCCTTTC+TGG - chr4_1:79980377-79980396 Msa0575970:three_prime_UTR 45.0%
!! AACCAGAAAGGCACTACACT+AGG + chr4_1:79980382-79980401 None:intergenic 45.0%
! TAGTGTAGTGCCTTTCTGGT+TGG - chr4_1:79980381-79980400 Msa0575970:three_prime_UTR 45.0%
!! AGTGTAGTGCCTTTCTGGTT+GGG - chr4_1:79980382-79980401 Msa0575970:three_prime_UTR 45.0%
AATTGGAATCCATGGCCACA+GGG + chr4_1:79980492-79980511 None:intergenic 45.0%
AAATTGGAATCCATGGCCAC+AGG + chr4_1:79980493-79980512 None:intergenic 45.0%
AATGACGAGGAAGCTAAGTG+TGG + chr4_1:79980594-79980613 None:intergenic 45.0%
ACACTTAGCTTCCTCGTCAT+TGG - chr4_1:79980593-79980612 Msa0575970:three_prime_UTR 45.0%
! AGCAACTTGAGACTGGTTGT+AGG + chr4_1:79980639-79980658 None:intergenic 45.0%
CCTGAAAAGCAACTTGAGAC+TGG + chr4_1:79980646-79980665 None:intergenic 45.0%
!!! CCAGTCTCAAGTTGCTTTTC+AGG - chr4_1:79980643-79980662 Msa0575970:three_prime_UTR 45.0%
CAACATCTCCTCTGTAGTCA+TGG + chr4_1:79981026-79981045 None:intergenic 45.0%
TGTATCCACGAAGAAGAGCT+CGG + chr4_1:79981225-79981244 None:intergenic 45.0%
! CGTGGATACAACTCCTTTTG+TGG - chr4_1:79981235-79981254 Msa0575970:intron 45.0%
GTGATTCTAAACGAAGGACC+TGG - chr4_1:79981414-79981433 Msa0575970:intron 45.0%
TCCCACAACAATCTTCCACT+TGG + chr4_1:79981464-79981483 None:intergenic 45.0%
GAGGTGTGTTAAGAGCTCTT+TGG + chr4_1:79981524-79981543 None:intergenic 45.0%
TAACTCCTTAATCAGTGCCC+CGG + chr4_1:79981612-79981631 None:intergenic 45.0%
CTGGTTAAGGAAGCCAAAAG+TGG + chr4_1:79981715-79981734 None:intergenic 45.0%
AACACATAAGTAGCACGGAC+AGG - chr4_1:79981904-79981923 Msa0575970:intron 45.0%
CACTAGTCAAGAACTGCATG+TGG + chr4_1:79982026-79982045 None:intergenic 45.0%
CACATGCAGTTCTTGACTAG+TGG - chr4_1:79982024-79982043 Msa0575970:CDS 45.0%
ATGCAGTTCTTGACTAGTGG+TGG - chr4_1:79982027-79982046 Msa0575970:CDS 45.0%
ATCAGGACCCTCTTTAGATG+CGG + chr4_1:79982255-79982274 None:intergenic 45.0%
!! ATAAGCGCAGAAGCGTTCTT+TGG + chr4_1:79982374-79982393 None:intergenic 45.0%
CTACAGTGCAGTGTATGGAA+AGG + chr4_1:79982546-79982565 None:intergenic 45.0%
TTCAGCTACAGTGCAGTGTA+TGG + chr4_1:79982551-79982570 None:intergenic 45.0%
TTTACCGGAGATCAAACGCA+TGG - chr4_1:79982573-79982592 Msa0575970:five_prime_UTR 45.0%
!! TTAATAAATAATGATAAAAA+TGG + chr4_1:79980724-79980743 None:intergenic 5.0%
!! TTAAAATTAATAAAATCATA+TGG - chr4_1:79982491-79982510 Msa0575970:five_prime_UTR 5.0%
ATGGCATGCATCATTCACCG+TGG + chr4_1:79980137-79980156 None:intergenic 50.0%
!! GTGTAGTGCCTTTCTGGTTG+GGG - chr4_1:79980383-79980402 Msa0575970:three_prime_UTR 50.0%
ATTGGAATCCATGGCCACAG+GGG + chr4_1:79980491-79980510 None:intergenic 50.0%
TGGCATCTGCTTTGACAGCA+GGG + chr4_1:79980574-79980593 None:intergenic 50.0%
CTTCCTCGTCATTGGAGACT+GGG - chr4_1:79980601-79980620 Msa0575970:three_prime_UTR 50.0%
TTCCTCGTCATTGGAGACTG+GGG - chr4_1:79980602-79980621 Msa0575970:three_prime_UTR 50.0%
ATTGGAGACTGGGGAAGGAA+AGG - chr4_1:79980611-79980630 Msa0575970:three_prime_UTR 50.0%
GGCGGTGTAGATATCTGAGA+AGG + chr4_1:79980866-79980885 None:intergenic 50.0%
TTGGGCAACCATGACTACAG+AGG - chr4_1:79981015-79981034 Msa0575970:CDS 50.0%
! ATTGGAGAGGTGTACTTCCC+AGG - chr4_1:79981294-79981313 Msa0575970:intron 50.0%
TGGTGCCCTATGCTTCTCAA+TGG + chr4_1:79981493-79981512 None:intergenic 50.0%
! TTGAGAAGCATAGGGCACCA+TGG - chr4_1:79981493-79981512 Msa0575970:intron 50.0%
ACACCTCCTGCCAATTCTTG+AGG - chr4_1:79981537-79981556 Msa0575970:intron 50.0%
TGACCTCAAGAATTGGCAGG+AGG + chr4_1:79981543-79981562 None:intergenic 50.0%
GAGTGACCTCAAGAATTGGC+AGG + chr4_1:79981546-79981565 None:intergenic 50.0%
!! TTAACCCGGGGCACTGATTA+AGG - chr4_1:79981604-79981623 Msa0575970:CDS 50.0%
AACTCCTTAATCAGTGCCCC+GGG + chr4_1:79981611-79981630 None:intergenic 50.0%
CATAAGTAGCACGGACAGGT+AGG - chr4_1:79981908-79981927 Msa0575970:intron 50.0%
CAGTTCTTGACTAGTGGTGG+AGG - chr4_1:79982030-79982049 Msa0575970:CDS 50.0%
GAAGCCATGCGTTTGATCTC+CGG + chr4_1:79982580-79982599 None:intergenic 50.0%
TTGGAATCCATGGCCACAGG+GGG + chr4_1:79980490-79980509 None:intergenic 55.0%
GTGGCATCTGCTTTGACAGC+AGG + chr4_1:79980575-79980594 None:intergenic 55.0%
GCTTCCTCGTCATTGGAGAC+TGG - chr4_1:79980600-79980619 Msa0575970:three_prime_UTR 55.0%
TTCCCCAGTCTCCAATGACG+AGG + chr4_1:79980607-79980626 None:intergenic 55.0%
TCGTCATTGGAGACTGGGGA+AGG - chr4_1:79980606-79980625 Msa0575970:three_prime_UTR 55.0%
GATTGCCGAGCTCTTCTTCG+TGG - chr4_1:79981217-79981236 Msa0575970:intron 55.0%
!! AGAGCTCTTTGGTGTCGCCA+TGG + chr4_1:79981513-79981532 None:intergenic 55.0%
GGCTTCCTTAACCAGTGTCC+CGG - chr4_1:79981720-79981739 Msa0575970:intron 55.0%
GCTTCCTTAACCAGTGTCCC+GGG - chr4_1:79981721-79981740 Msa0575970:intron 55.0%
CTTCCTTAACCAGTGTCCCG+GGG - chr4_1:79981722-79981741 Msa0575970:intron 55.0%
TTCCTTAACCAGTGTCCCGG+GGG - chr4_1:79981723-79981742 Msa0575970:intron 55.0%
TCATGTTAACCAGTGCCCCC+GGG + chr4_1:79981741-79981760 None:intergenic 55.0%
GTCATGTTAACCAGTGCCCC+CGG + chr4_1:79981742-79981761 None:intergenic 55.0%
! GACTAGTGGTGGAGGCTCAA+AGG - chr4_1:79982038-79982057 Msa0575970:CDS 55.0%
! GGAGGCTCAAAGGCATGGAA+AGG - chr4_1:79982048-79982067 Msa0575970:CDS 55.0%
CAAGTAGCCTAAGCCCCCTG+TGG - chr4_1:79980474-79980493 Msa0575970:three_prime_UTR 60.0%
! CAGCAGGGTGCTCAATGCGT+TGG + chr4_1:79980559-79980578 None:intergenic 60.0%
GAATGGGCACGACCACTGCT+TGG - chr4_1:79981881-79981900 Msa0575970:intron 60.0%
! GTGGTGGAGGCTCAAAGGCA+TGG - chr4_1:79982043-79982062 Msa0575970:CDS 60.0%
TCCATGGCCACAGGGGGCTT+AGG + chr4_1:79980484-79980503 None:intergenic 65.0%
! TGCCCCCGGGACACTGGTTA+AGG + chr4_1:79981728-79981747 None:intergenic 65.0%
GCCTAAGCCCCCTGTGGCCA+TGG - chr4_1:79980480-79980499 Msa0575970:three_prime_UTR 70.0%
! AACCAGTGTCCCGGGGGCAC+TGG - chr4_1:79981729-79981748 Msa0575970:intron 70.0%
AACCAGTGCCCCCGGGACAC+TGG + chr4_1:79981734-79981753 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 79980130 79982776 79980130 ID=Msa0575970;Name=Msa0575970
chr4_1 mRNA 79980130 79982776 79980130 ID=Msa0575970-mRNA-1;Parent=Msa0575970;Name=Msa0575970-mRNA-1;_AED=0.11;_eAED=0.11;_QI=280|0.85|1|1|0.71|0.62|8|540|294
chr4_1 exon 79980130 79980883 79980130 ID=Msa0575970-mRNA-1:exon:28585;Parent=Msa0575970-mRNA-1
chr4_1 exon 79980981 79981048 79980981 ID=Msa0575970-mRNA-1:exon:28584;Parent=Msa0575970-mRNA-1
chr4_1 exon 79981563 79981690 79981563 ID=Msa0575970-mRNA-1:exon:28583;Parent=Msa0575970-mRNA-1
chr4_1 exon 79981786 79981893 79981786 ID=Msa0575970-mRNA-1:exon:28582;Parent=Msa0575970-mRNA-1
chr4_1 exon 79981993 79982149 79981993 ID=Msa0575970-mRNA-1:exon:28581;Parent=Msa0575970-mRNA-1
chr4_1 exon 79982242 79982532 79982242 ID=Msa0575970-mRNA-1:exon:28580;Parent=Msa0575970-mRNA-1
chr4_1 exon 79982557 79982605 79982557 ID=Msa0575970-mRNA-1:exon:28579;Parent=Msa0575970-mRNA-1
chr4_1 exon 79982627 79982776 79982627 ID=Msa0575970-mRNA-1:exon:28578;Parent=Msa0575970-mRNA-1
chr4_1 five_prime_UTR 79982627 79982776 79982627 ID=Msa0575970-mRNA-1:five_prime_utr;Parent=Msa0575970-mRNA-1
chr4_1 five_prime_UTR 79982557 79982605 79982557 ID=Msa0575970-mRNA-1:five_prime_utr;Parent=Msa0575970-mRNA-1
chr4_1 five_prime_UTR 79982452 79982532 79982452 ID=Msa0575970-mRNA-1:five_prime_utr;Parent=Msa0575970-mRNA-1
chr4_1 CDS 79982242 79982451 79982242 ID=Msa0575970-mRNA-1:cds;Parent=Msa0575970-mRNA-1
chr4_1 CDS 79981993 79982149 79981993 ID=Msa0575970-mRNA-1:cds;Parent=Msa0575970-mRNA-1
chr4_1 CDS 79981786 79981893 79981786 ID=Msa0575970-mRNA-1:cds;Parent=Msa0575970-mRNA-1
chr4_1 CDS 79981563 79981690 79981563 ID=Msa0575970-mRNA-1:cds;Parent=Msa0575970-mRNA-1
chr4_1 CDS 79980981 79981048 79980981 ID=Msa0575970-mRNA-1:cds;Parent=Msa0575970-mRNA-1
chr4_1 CDS 79980670 79980883 79980670 ID=Msa0575970-mRNA-1:cds;Parent=Msa0575970-mRNA-1
chr4_1 three_prime_UTR 79980130 79980669 79980130 ID=Msa0575970-mRNA-1:three_prime_utr;Parent=Msa0575970-mRNA-1
Gene Sequence

>Msa0575970

ATGGGTGGTTTAGGAAGAACAAGTAGCCTAAGCCCCCTGTGGCCATGGATTCCAATTTACATCTGTGTTGTGTGTGTAAGTGTAAATGTATCAGCTGAGCTCCAACGCATTGAGCACCCTGCTGTCAAAGCAGATGCCACACTTAGCTTCCTCGTCATTGGAGACTGGGGAAGGAAAGGAACCTACAACCAGTCTCAAGTTGCTTTTCAGATGGGAAGAGTGGCTGACAAGTTAAACATTGACTTTGTGGTATCAACCGGAGACAATTTCTATGACGATGGATTGACTGGTGTACATGACCCTGCTTTTCAATATTCCTTCTCAGATATCTACACCGCCAACAGCCTTCAAAAACAATGGTATAATGTGTTGGGCAACCATGACTACAGAGGAGATGTTGAAGCTCAATTAAGCCCATTTCTTCAAAATATTGATCATAGATGGTTTTGCCAAAGATCTTTTTTTGTTCACACTGAGATTGCCGAGCTCTTCTTCGTGGATACAACTCCTTTTGTGGACAAGTACTTTCTCAAGCCAAAGGATCACAAGTATGATTGGAGAGGTGTACTTCCCAGGAAGAAATATTTATCAAACCTCTTGAAGGCCAACAATGTTGATATGTACATGAATGGGCACGACCACTGCTTGGAACACATAAGTAGCACGGACAGCCACATGCAGTTCTTGACTAGTGGTGGAGGCTCAAAGGCATGGAAAGGAGACGTTGATAAAAATAGGAGAGATGGGGTCAAGTTTTACTATGACGGCCAAGGATTTATGTCTGTTGAGCTTGAGCAAATGAATGCCAAAGTTGTCTATTACGATATTTTTGGCAATGTTTTGCATGTTTTGAATCTATCCAAGGAGTTACATTATGCGATATAA

Protein sequence

>Msa0575970

MGGLGRTSSLSPLWPWIPIYICVVCVSVNVSAELQRIEHPAVKADATLSFLVIGDWGRKGTYNQSQVAFQMGRVADKLNIDFVVSTGDNFYDDGLTGVHDPAFQYSFSDIYTANSLQKQWYNVLGNHDYRGDVEAQLSPFLQNIDHRWFCQRSFFVHTEIAELFFVDTTPFVDKYFLKPKDHKYDWRGVLPRKKYLSNLLKANNVDMYMNGHDHCLEHISSTDSHMQFLTSGGGSKAWKGDVDKNRRDGVKFYYDGQGFMSVELEQMNAKVVYYDIFGNVLHVLNLSKELHYAI*