AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0614060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0614060 MtrunA17_Chr4g0049871 98.864 176 2 0 1 176 1 176 1.25e-131 365
Msa0614060 MtrunA17_Chr2g0279611 67.630 173 55 1 2 173 3 175 2.33e-86 252
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0614060 AT2G14110.1 66.860 172 56 1 5 175 4 175 2.99e-86 251
Msa0614060 AT2G14110.2 68.421 133 42 0 5 137 4 136 5.15e-69 206

Find 59 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATAACAGGTTTCAAATT+TGG 0.132575 4_2:-62973066 Msa0614060:intron
GGTAATAGTTTATGCCTTTA+TGG 0.172774 4_2:-62973965 None:intergenic
CAACCGTTCGCTTATATAAT+TGG 0.180368 4_2:-62973893 Msa0614060:five_prime_UTR
TTTGGGAGTTACAAGTATTT+TGG 0.197480 4_2:-62973048 Msa0614060:CDS
CAATAACAGGTTTCAAATTT+GGG 0.308384 4_2:-62973065 Msa0614060:intron
TTCGCTTATATAATTGGTTT+TGG 0.310728 4_2:-62973887 Msa0614060:five_prime_UTR
GTTAACAATGGCTTAAATCT+AGG 0.314102 4_2:-62973026 Msa0614060:CDS
CGATGGTCCTTATTATTTGT+TGG 0.332080 4_2:+62973858 None:intergenic
GTACATCCCAACAAATAATA+AGG 0.336358 4_2:-62973865 Msa0614060:five_prime_UTR
TCGATTTAGATTATACTCTT+TGG 0.338666 4_2:-62973726 Msa0614060:CDS
GATGGTCCTTATTATTTGTT+GGG 0.347588 4_2:+62973859 None:intergenic
CTTTCTCTCAAAGTGGATGA+TGG 0.395227 4_2:+62973833 None:intergenic
CAGAAAATTCATTCAAAGAC+CGG 0.400088 4_2:-62973250 Msa0614060:CDS
ACATTCAATTTAGTCCATAA+AGG 0.401753 4_2:+62973951 None:intergenic
CACCTCAATGTTTGTCGCCC+AGG 0.413707 4_2:-62973440 Msa0614060:intron
GAAAGAAGAGATGGAGGAGG+TGG 0.415362 4_2:-62973815 Msa0614060:exon
CCAACCATGATGCTTGAGAT+TGG 0.417327 4_2:-62972905 Msa0614060:three_prime_UTR
ATACTCTTTGGCCTTTCTAC+TGG 0.426381 4_2:-62973714 Msa0614060:intron
AGAGATGGAGGAGGTGGAGA+AGG 0.429450 4_2:-62973809 Msa0614060:exon
GCTGAGGCAGTGCAAATGAT+AGG 0.438625 4_2:-62973781 Msa0614060:CDS
CCTCAAAGAACAAGCAGAAA+AGG 0.469406 4_2:-62972959 Msa0614060:CDS
TGATAACAATAACATGAAAC+CGG 0.472254 4_2:-62973194 Msa0614060:intron
AATGCTATTAAAATTAAGTA+AGG 0.482276 4_2:+62972577 None:intergenic
GAGTGCACTCAAGATGCCTC+TGG 0.487612 4_2:+62973546 None:intergenic
ATCTCTTCTTTCTCTCAAAG+TGG 0.490555 4_2:+62973826 None:intergenic
CAAAGAAGGTGTGTCGTGCT+TGG 0.497441 4_2:+62973579 None:intergenic
TATGTGTGGAGTTGGTGATT+TGG 0.498178 4_2:+62973492 None:intergenic
AGAGAAAGAAGAGATGGAGG+AGG 0.524195 4_2:-62973818 Msa0614060:exon
CTCAAGATGCCTCTGGAATG+TGG 0.524198 4_2:+62973553 None:intergenic
TTGAGTGCACTCAAAGATGA+AGG 0.526991 4_2:-62973535 Msa0614060:CDS
AAATCGAACACTACGAGCCT+TGG 0.527042 4_2:+62973742 None:intergenic
AATCTAGGAGTATTTAGAGA+AGG 0.528974 4_2:-62973011 Msa0614060:CDS
GTACAAATTTACCAGTAGAA+AGG 0.530754 4_2:+62973703 None:intergenic
TGTGTCTATATTACTCTCCA+TGG 0.533355 4_2:-62972818 Msa0614060:three_prime_UTR
GGAGGAGGTGGAGAAGGTGA+AGG 0.537062 4_2:-62973803 Msa0614060:CDS
ATCTAGGAGTATTTAGAGAA+GGG 0.541922 4_2:-62973010 Msa0614060:CDS
TTGAGAGAAAGAAGAGATGG+AGG 0.549183 4_2:-62973821 Msa0614060:exon
GGTGGAGAAGGTGAAGGCTG+AGG 0.552861 4_2:-62973797 Msa0614060:CDS
ACTTTGAGAGAAAGAAGAGA+TGG 0.562452 4_2:-62973824 Msa0614060:exon
TAAGAAGACGAATGTGTGGA+GGG 0.566639 4_2:+62973916 None:intergenic
CTGGAATGTGGAAACAAAGA+AGG 0.568363 4_2:+62973565 None:intergenic
CCAATCTCAAGCATCATGGT+TGG 0.569748 4_2:+62972905 None:intergenic
GTTGTTGCTATGTGTGGAGT+TGG 0.571433 4_2:+62973484 None:intergenic
CATAGAGTTGTAGGGGACAC+CGG 0.577518 4_2:+62973231 None:intergenic
AAATACACAGAAAATTCACT+TGG 0.578953 4_2:+62972878 None:intergenic
ACATCCAATCTCAAGCATCA+TGG 0.585751 4_2:+62972901 None:intergenic
CAAAGTGGATGATGGATCGA+TGG 0.600898 4_2:+62973841 None:intergenic
AGTTGGTGATTTGGAAGCAA+TGG 0.603835 4_2:+62973501 None:intergenic
AAGTAAGGACTAAACTTACA+AGG 0.615053 4_2:+62972592 None:intergenic
AGATACGTTGTTGCTATGTG+TGG 0.622048 4_2:+62973478 None:intergenic
GTAAGAAGACGAATGTGTGG+AGG 0.628554 4_2:+62973915 None:intergenic
AACCTGGGCGACAAACATTG+AGG 0.630045 4_2:+62973438 None:intergenic
AAACCAATTATATAAGCGAA+CGG 0.630900 4_2:+62973890 None:intergenic
ACACAAGTTCTAAGATGATG+TGG 0.641264 4_2:-62972735 Msa0614060:three_prime_UTR
TCTTTGTTTCCACATTCCAG+AGG 0.646314 4_2:-62973562 Msa0614060:CDS
AAAAGAGCATAGAGTTGTAG+GGG 0.649290 4_2:+62973224 None:intergenic
AAGGTGTGTCGTGCTTGGAG+CGG 0.652306 4_2:+62973584 None:intergenic
GTTGTAAGAAGACGAATGTG+TGG 0.670683 4_2:+62973912 None:intergenic
GAATGTTTCAAGTACTACCA+AGG 0.677669 4_2:-62973759 Msa0614060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTATGTATATTTATTTTA+CGG - chr4_2:62973149-62973168 Msa0614060:intron 10.0%
!! AAAAAAGAGAAATTAAATTT+GGG + chr4_2:62973190-62973209 None:intergenic 10.0%
!! TAAAAAAGAGAAATTAAATT+TGG + chr4_2:62973191-62973210 None:intergenic 10.0%
!!! TTGTATGTATATTTATTTTA+CGG - chr4_2:62973149-62973168 Msa0614060:intron 10.0%
!! AAAAAAGAGAAATTAAATTT+GGG + chr4_2:62973190-62973209 None:intergenic 10.0%
!! TAAAAAAGAGAAATTAAATT+TGG + chr4_2:62973191-62973210 None:intergenic 10.0%
!!! ATTTCTCTTTTTTATTGTTT+AGG - chr4_2:62973197-62973216 Msa0614060:CDS 15.0%
!! AACAAAATAAAATGATATAC+CGG + chr4_2:62973336-62973355 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + chr4_2:62973934-62973953 None:intergenic 15.0%
!!! ATTTCTCTTTTTTATTGTTT+AGG - chr4_2:62973197-62973216 Msa0614060:CDS 15.0%
!! AACAAAATAAAATGATATAC+CGG + chr4_2:62973336-62973355 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + chr4_2:62973934-62973953 None:intergenic 15.0%
!!! GAATTTTCTGTGTATTTATA+TGG - chr4_2:62973636-62973655 Msa0614060:intron 20.0%
!!! ACATAATTAACCCTTTTTTA+GGG + chr4_2:62973873-62973892 None:intergenic 20.0%
!!! AACATAATTAACCCTTTTTT+AGG + chr4_2:62973874-62973893 None:intergenic 20.0%
!!! AAAAGGGTTAATTATGTTTT+TGG - chr4_2:62973876-62973895 Msa0614060:five_prime_UTR 20.0%
!!! GAATTTTCTGTGTATTTATA+TGG - chr4_2:62973636-62973655 Msa0614060:intron 20.0%
!!! ACATAATTAACCCTTTTTTA+GGG + chr4_2:62973873-62973892 None:intergenic 20.0%
!!! AACATAATTAACCCTTTTTT+AGG + chr4_2:62973874-62973893 None:intergenic 20.0%
!!! AAAAGGGTTAATTATGTTTT+TGG - chr4_2:62973876-62973895 Msa0614060:five_prime_UTR 20.0%
! ACATTCAATTTAGTCCATAA+AGG + chr4_2:62972560-62972579 None:intergenic 25.0%
! AAACCAATTATATAAGCGAA+CGG + chr4_2:62972621-62972640 None:intergenic 25.0%
!!! TTCGCTTATATAATTGGTTT+TGG - chr4_2:62972621-62972640 Msa0614060:three_prime_UTR 25.0%
! TCGATTTAGATTATACTCTT+TGG - chr4_2:62972782-62972801 Msa0614060:three_prime_UTR 25.0%
!! TTTTCATCTTTCCTATTTTC+TGG - chr4_2:62972838-62972857 Msa0614060:three_prime_UTR 25.0%
! AAATAAGCGCAATAAAAAAG+CGG + chr4_2:62973131-62973150 None:intergenic 25.0%
! TGATAACAATAACATGAAAC+CGG - chr4_2:62973314-62973333 Msa0614060:intron 25.0%
!! CTCAAATTCTCTTATTTGTT+TGG - chr4_2:62973373-62973392 Msa0614060:intron 25.0%
!! AAATTCTCTTATTTGTTTGG+AGG - chr4_2:62973376-62973395 Msa0614060:intron 25.0%
! CAATAACAGGTTTCAAATTT+GGG - chr4_2:62973443-62973462 Msa0614060:CDS 25.0%
!!! ACAAGTATTTTGGTTAACAA+TGG - chr4_2:62973470-62973489 Msa0614060:CDS 25.0%
! AAATACACAGAAAATTCACT+TGG + chr4_2:62973633-62973652 None:intergenic 25.0%
!!! AATACCTGTTTTTTTATCTG+TGG + chr4_2:62973824-62973843 None:intergenic 25.0%
! AACTATATGTTCCCTAAAAA+AGG - chr4_2:62973859-62973878 Msa0614060:five_prime_UTR 25.0%
! ACTATATGTTCCCTAAAAAA+GGG - chr4_2:62973860-62973879 Msa0614060:five_prime_UTR 25.0%
! ACATTCAATTTAGTCCATAA+AGG + chr4_2:62972560-62972579 None:intergenic 25.0%
! AAACCAATTATATAAGCGAA+CGG + chr4_2:62972621-62972640 None:intergenic 25.0%
!!! TTCGCTTATATAATTGGTTT+TGG - chr4_2:62972621-62972640 Msa0614060:three_prime_UTR 25.0%
! TCGATTTAGATTATACTCTT+TGG - chr4_2:62972782-62972801 Msa0614060:three_prime_UTR 25.0%
!! TTTTCATCTTTCCTATTTTC+TGG - chr4_2:62972838-62972857 Msa0614060:three_prime_UTR 25.0%
! AAATAAGCGCAATAAAAAAG+CGG + chr4_2:62973131-62973150 None:intergenic 25.0%
! TGATAACAATAACATGAAAC+CGG - chr4_2:62973314-62973333 Msa0614060:intron 25.0%
!! CTCAAATTCTCTTATTTGTT+TGG - chr4_2:62973373-62973392 Msa0614060:intron 25.0%
!! AAATTCTCTTATTTGTTTGG+AGG - chr4_2:62973376-62973395 Msa0614060:intron 25.0%
! CAATAACAGGTTTCAAATTT+GGG - chr4_2:62973443-62973462 Msa0614060:CDS 25.0%
!!! ACAAGTATTTTGGTTAACAA+TGG - chr4_2:62973470-62973489 Msa0614060:CDS 25.0%
! AAATACACAGAAAATTCACT+TGG + chr4_2:62973633-62973652 None:intergenic 25.0%
!!! AATACCTGTTTTTTTATCTG+TGG + chr4_2:62973824-62973843 None:intergenic 25.0%
! AACTATATGTTCCCTAAAAA+AGG - chr4_2:62973859-62973878 Msa0614060:five_prime_UTR 25.0%
! ACTATATGTTCCCTAAAAAA+GGG - chr4_2:62973860-62973879 Msa0614060:five_prime_UTR 25.0%
GTACATCCCAACAAATAATA+AGG - chr4_2:62972643-62972662 Msa0614060:three_prime_UTR 30.0%
GATGGTCCTTATTATTTGTT+GGG + chr4_2:62972652-62972671 None:intergenic 30.0%
GTACAAATTTACCAGTAGAA+AGG + chr4_2:62972808-62972827 None:intergenic 30.0%
TCTACTGGTAAATTTGTACA+TGG - chr4_2:62972809-62972828 Msa0614060:three_prime_UTR 30.0%
CAGAAAATTCATTCAAAGAC+CGG - chr4_2:62973258-62973277 Msa0614060:CDS 30.0%
! AAAAAGAGCATAGAGTTGTA+GGG + chr4_2:62973288-62973307 None:intergenic 30.0%
! CCAAATTTGAAACCTGTTAT+TGG + chr4_2:62973445-62973464 None:intergenic 30.0%
CCAATAACAGGTTTCAAATT+TGG - chr4_2:62973442-62973461 Msa0614060:CDS 30.0%
! TTTGGGAGTTACAAGTATTT+TGG - chr4_2:62973460-62973479 Msa0614060:CDS 30.0%
GTTAACAATGGCTTAAATCT+AGG - chr4_2:62973482-62973501 Msa0614060:CDS 30.0%
!! AATCTAGGAGTATTTAGAGA+AGG - chr4_2:62973497-62973516 Msa0614060:CDS 30.0%
!! ATCTAGGAGTATTTAGAGAA+GGG - chr4_2:62973498-62973517 Msa0614060:CDS 30.0%
! AATTTTATGCAATCATGCCA+TGG + chr4_2:62973710-62973729 None:intergenic 30.0%
AAGTCCACAGATAAAAAAAC+AGG - chr4_2:62973817-62973836 Msa0614060:exon 30.0%
AAGTAAGGACTAAACTTACA+AGG + chr4_2:62973919-62973938 None:intergenic 30.0%
GTACATCCCAACAAATAATA+AGG - chr4_2:62972643-62972662 Msa0614060:three_prime_UTR 30.0%
GATGGTCCTTATTATTTGTT+GGG + chr4_2:62972652-62972671 None:intergenic 30.0%
GTACAAATTTACCAGTAGAA+AGG + chr4_2:62972808-62972827 None:intergenic 30.0%
TCTACTGGTAAATTTGTACA+TGG - chr4_2:62972809-62972828 Msa0614060:three_prime_UTR 30.0%
CAGAAAATTCATTCAAAGAC+CGG - chr4_2:62973258-62973277 Msa0614060:CDS 30.0%
! AAAAAGAGCATAGAGTTGTA+GGG + chr4_2:62973288-62973307 None:intergenic 30.0%
! CCAAATTTGAAACCTGTTAT+TGG + chr4_2:62973445-62973464 None:intergenic 30.0%
CCAATAACAGGTTTCAAATT+TGG - chr4_2:62973442-62973461 Msa0614060:CDS 30.0%
! TTTGGGAGTTACAAGTATTT+TGG - chr4_2:62973460-62973479 Msa0614060:CDS 30.0%
GTTAACAATGGCTTAAATCT+AGG - chr4_2:62973482-62973501 Msa0614060:CDS 30.0%
!! AATCTAGGAGTATTTAGAGA+AGG - chr4_2:62973497-62973516 Msa0614060:CDS 30.0%
!! ATCTAGGAGTATTTAGAGAA+GGG - chr4_2:62973498-62973517 Msa0614060:CDS 30.0%
! AATTTTATGCAATCATGCCA+TGG + chr4_2:62973710-62973729 None:intergenic 30.0%
AAGTCCACAGATAAAAAAAC+AGG - chr4_2:62973817-62973836 Msa0614060:exon 30.0%
AAGTAAGGACTAAACTTACA+AGG + chr4_2:62973919-62973938 None:intergenic 30.0%
CAACCGTTCGCTTATATAAT+TGG - chr4_2:62972615-62972634 Msa0614060:three_prime_UTR 35.0%
CGATGGTCCTTATTATTTGT+TGG + chr4_2:62972653-62972672 None:intergenic 35.0%
ATCTCTTCTTTCTCTCAAAG+TGG + chr4_2:62972685-62972704 None:intergenic 35.0%
! ACTTTGAGAGAAAGAAGAGA+TGG - chr4_2:62972684-62972703 Msa0614060:three_prime_UTR 35.0%
! GAATGTTTCAAGTACTACCA+AGG - chr4_2:62972749-62972768 Msa0614060:three_prime_UTR 35.0%
TAGTGAGTACTCCAGAAAAT+AGG + chr4_2:62972852-62972871 None:intergenic 35.0%
! AAAAGAGCATAGAGTTGTAG+GGG + chr4_2:62973287-62973306 None:intergenic 35.0%
! GAAAAAGAGCATAGAGTTGT+AGG + chr4_2:62973289-62973308 None:intergenic 35.0%
!! TGATTTGTTGTGCCAATAAC+AGG - chr4_2:62973430-62973449 Msa0614060:intron 35.0%
! TCACAAGATTTTCGCAAAAC+TGG - chr4_2:62973522-62973541 Msa0614060:CDS 35.0%
! CACAAGATTTTCGCAAAACT+GGG - chr4_2:62973523-62973542 Msa0614060:CDS 35.0%
TGTGTCTATATTACTCTCCA+TGG - chr4_2:62973690-62973709 Msa0614060:intron 35.0%
!! ACACAAGTTCTAAGATGATG+TGG - chr4_2:62973773-62973792 Msa0614060:CDS 35.0%
! TACAAGGTCGCAATTTTGTA+GGG + chr4_2:62973903-62973922 None:intergenic 35.0%
! TTACAAGGTCGCAATTTTGT+AGG + chr4_2:62973904-62973923 None:intergenic 35.0%
CAACCGTTCGCTTATATAAT+TGG - chr4_2:62972615-62972634 Msa0614060:three_prime_UTR 35.0%
CGATGGTCCTTATTATTTGT+TGG + chr4_2:62972653-62972672 None:intergenic 35.0%
ATCTCTTCTTTCTCTCAAAG+TGG + chr4_2:62972685-62972704 None:intergenic 35.0%
! ACTTTGAGAGAAAGAAGAGA+TGG - chr4_2:62972684-62972703 Msa0614060:three_prime_UTR 35.0%
! GAATGTTTCAAGTACTACCA+AGG - chr4_2:62972749-62972768 Msa0614060:three_prime_UTR 35.0%
TAGTGAGTACTCCAGAAAAT+AGG + chr4_2:62972852-62972871 None:intergenic 35.0%
! AAAAGAGCATAGAGTTGTAG+GGG + chr4_2:62973287-62973306 None:intergenic 35.0%
! GAAAAAGAGCATAGAGTTGT+AGG + chr4_2:62973289-62973308 None:intergenic 35.0%
!! TGATTTGTTGTGCCAATAAC+AGG - chr4_2:62973430-62973449 Msa0614060:intron 35.0%
! TCACAAGATTTTCGCAAAAC+TGG - chr4_2:62973522-62973541 Msa0614060:CDS 35.0%
! CACAAGATTTTCGCAAAACT+GGG - chr4_2:62973523-62973542 Msa0614060:CDS 35.0%
TGTGTCTATATTACTCTCCA+TGG - chr4_2:62973690-62973709 Msa0614060:intron 35.0%
!! ACACAAGTTCTAAGATGATG+TGG - chr4_2:62973773-62973792 Msa0614060:CDS 35.0%
! TACAAGGTCGCAATTTTGTA+GGG + chr4_2:62973903-62973922 None:intergenic 35.0%
! TTACAAGGTCGCAATTTTGT+AGG + chr4_2:62973904-62973923 None:intergenic 35.0%
TAAGAAGACGAATGTGTGGA+GGG + chr4_2:62972595-62972614 None:intergenic 40.0%
GTTGTAAGAAGACGAATGTG+TGG + chr4_2:62972599-62972618 None:intergenic 40.0%
CTTTCTCTCAAAGTGGATGA+TGG + chr4_2:62972678-62972697 None:intergenic 40.0%
TTGAGAGAAAGAAGAGATGG+AGG - chr4_2:62972687-62972706 Msa0614060:three_prime_UTR 40.0%
! ATACTCTTTGGCCTTTCTAC+TGG - chr4_2:62972794-62972813 Msa0614060:three_prime_UTR 40.0%
CTGGAATGTGGAAACAAAGA+AGG + chr4_2:62972946-62972965 None:intergenic 40.0%
! TCTTTGTTTCCACATTCCAG+AGG - chr4_2:62972946-62972965 Msa0614060:exon 40.0%
TTGAGTGCACTCAAAGATGA+AGG - chr4_2:62972973-62972992 Msa0614060:CDS 40.0%
!! AGTTGGTGATTTGGAAGCAA+TGG + chr4_2:62973010-62973029 None:intergenic 40.0%
!! TATGTGTGGAGTTGGTGATT+TGG + chr4_2:62973019-62973038 None:intergenic 40.0%
AGATACGTTGTTGCTATGTG+TGG + chr4_2:62973033-62973052 None:intergenic 40.0%
ACTGAGGAACAAACAAACCT+GGG + chr4_2:62973088-62973107 None:intergenic 40.0%
! CCTTTTCTGCTTGTTCTTTG+AGG + chr4_2:62973552-62973571 None:intergenic 40.0%
CCTCAAAGAACAAGCAGAAA+AGG - chr4_2:62973549-62973568 Msa0614060:CDS 40.0%
ACATCCAATCTCAAGCATCA+TGG + chr4_2:62973610-62973629 None:intergenic 40.0%
TAAGAAGACGAATGTGTGGA+GGG + chr4_2:62972595-62972614 None:intergenic 40.0%
GTTGTAAGAAGACGAATGTG+TGG + chr4_2:62972599-62972618 None:intergenic 40.0%
CTTTCTCTCAAAGTGGATGA+TGG + chr4_2:62972678-62972697 None:intergenic 40.0%
TTGAGAGAAAGAAGAGATGG+AGG - chr4_2:62972687-62972706 Msa0614060:three_prime_UTR 40.0%
! ATACTCTTTGGCCTTTCTAC+TGG - chr4_2:62972794-62972813 Msa0614060:three_prime_UTR 40.0%
CTGGAATGTGGAAACAAAGA+AGG + chr4_2:62972946-62972965 None:intergenic 40.0%
! TCTTTGTTTCCACATTCCAG+AGG - chr4_2:62972946-62972965 Msa0614060:exon 40.0%
TTGAGTGCACTCAAAGATGA+AGG - chr4_2:62972973-62972992 Msa0614060:CDS 40.0%
!! AGTTGGTGATTTGGAAGCAA+TGG + chr4_2:62973010-62973029 None:intergenic 40.0%
!! TATGTGTGGAGTTGGTGATT+TGG + chr4_2:62973019-62973038 None:intergenic 40.0%
AGATACGTTGTTGCTATGTG+TGG + chr4_2:62973033-62973052 None:intergenic 40.0%
ACTGAGGAACAAACAAACCT+GGG + chr4_2:62973088-62973107 None:intergenic 40.0%
! CCTTTTCTGCTTGTTCTTTG+AGG + chr4_2:62973552-62973571 None:intergenic 40.0%
CCTCAAAGAACAAGCAGAAA+AGG - chr4_2:62973549-62973568 Msa0614060:CDS 40.0%
ACATCCAATCTCAAGCATCA+TGG + chr4_2:62973610-62973629 None:intergenic 40.0%
GTAAGAAGACGAATGTGTGG+AGG + chr4_2:62972596-62972615 None:intergenic 45.0%
!! CAAAGTGGATGATGGATCGA+TGG + chr4_2:62972670-62972689 None:intergenic 45.0%
AGAGAAAGAAGAGATGGAGG+AGG - chr4_2:62972690-62972709 Msa0614060:three_prime_UTR 45.0%
AAATCGAACACTACGAGCCT+TGG + chr4_2:62972769-62972788 None:intergenic 45.0%
GTTGTTGCTATGTGTGGAGT+TGG + chr4_2:62973027-62973046 None:intergenic 45.0%
CACTGAGGAACAAACAAACC+TGG + chr4_2:62973089-62973108 None:intergenic 45.0%
! CAGGTTTGTTTGTTCCTCAG+TGG - chr4_2:62973087-62973106 Msa0614060:intron 45.0%
AAGTGTTCGTCTTTCCACTG+AGG + chr4_2:62973104-62973123 None:intergenic 45.0%
CCAATCTCAAGCATCATGGT+TGG + chr4_2:62973606-62973625 None:intergenic 45.0%
CCAACCATGATGCTTGAGAT+TGG - chr4_2:62973603-62973622 Msa0614060:intron 45.0%
GTAAGAAGACGAATGTGTGG+AGG + chr4_2:62972596-62972615 None:intergenic 45.0%
!! CAAAGTGGATGATGGATCGA+TGG + chr4_2:62972670-62972689 None:intergenic 45.0%
AGAGAAAGAAGAGATGGAGG+AGG - chr4_2:62972690-62972709 Msa0614060:three_prime_UTR 45.0%
AAATCGAACACTACGAGCCT+TGG + chr4_2:62972769-62972788 None:intergenic 45.0%
GTTGTTGCTATGTGTGGAGT+TGG + chr4_2:62973027-62973046 None:intergenic 45.0%
CACTGAGGAACAAACAAACC+TGG + chr4_2:62973089-62973108 None:intergenic 45.0%
! CAGGTTTGTTTGTTCCTCAG+TGG - chr4_2:62973087-62973106 Msa0614060:intron 45.0%
AAGTGTTCGTCTTTCCACTG+AGG + chr4_2:62973104-62973123 None:intergenic 45.0%
CCAATCTCAAGCATCATGGT+TGG + chr4_2:62973606-62973625 None:intergenic 45.0%
CCAACCATGATGCTTGAGAT+TGG - chr4_2:62973603-62973622 Msa0614060:intron 45.0%
GAAAGAAGAGATGGAGGAGG+TGG - chr4_2:62972693-62972712 Msa0614060:three_prime_UTR 50.0%
GCTGAGGCAGTGCAAATGAT+AGG - chr4_2:62972727-62972746 Msa0614060:three_prime_UTR 50.0%
! CAAAGAAGGTGTGTCGTGCT+TGG + chr4_2:62972932-62972951 None:intergenic 50.0%
!! CTCAAGATGCCTCTGGAATG+TGG + chr4_2:62972958-62972977 None:intergenic 50.0%
AACCTGGGCGACAAACATTG+AGG + chr4_2:62973073-62973092 None:intergenic 50.0%
CATAGAGTTGTAGGGGACAC+CGG + chr4_2:62973280-62973299 None:intergenic 50.0%
GAAAGAAGAGATGGAGGAGG+TGG - chr4_2:62972693-62972712 Msa0614060:three_prime_UTR 50.0%
GCTGAGGCAGTGCAAATGAT+AGG - chr4_2:62972727-62972746 Msa0614060:three_prime_UTR 50.0%
! CAAAGAAGGTGTGTCGTGCT+TGG + chr4_2:62972932-62972951 None:intergenic 50.0%
!! CTCAAGATGCCTCTGGAATG+TGG + chr4_2:62972958-62972977 None:intergenic 50.0%
AACCTGGGCGACAAACATTG+AGG + chr4_2:62973073-62973092 None:intergenic 50.0%
CATAGAGTTGTAGGGGACAC+CGG + chr4_2:62973280-62973299 None:intergenic 50.0%
AGAGATGGAGGAGGTGGAGA+AGG - chr4_2:62972699-62972718 Msa0614060:three_prime_UTR 55.0%
AAGGTGTGTCGTGCTTGGAG+CGG + chr4_2:62972927-62972946 None:intergenic 55.0%
GAGTGCACTCAAGATGCCTC+TGG + chr4_2:62972965-62972984 None:intergenic 55.0%
CACCTCAATGTTTGTCGCCC+AGG - chr4_2:62973068-62973087 Msa0614060:intron 55.0%
AGAGATGGAGGAGGTGGAGA+AGG - chr4_2:62972699-62972718 Msa0614060:three_prime_UTR 55.0%
AAGGTGTGTCGTGCTTGGAG+CGG + chr4_2:62972927-62972946 None:intergenic 55.0%
GAGTGCACTCAAGATGCCTC+TGG + chr4_2:62972965-62972984 None:intergenic 55.0%
CACCTCAATGTTTGTCGCCC+AGG - chr4_2:62973068-62973087 Msa0614060:intron 55.0%
GGAGGAGGTGGAGAAGGTGA+AGG - chr4_2:62972705-62972724 Msa0614060:three_prime_UTR 60.0%
GGTGGAGAAGGTGAAGGCTG+AGG - chr4_2:62972711-62972730 Msa0614060:three_prime_UTR 60.0%
GGAGGAGGTGGAGAAGGTGA+AGG - chr4_2:62972705-62972724 Msa0614060:three_prime_UTR 60.0%
GGTGGAGAAGGTGAAGGCTG+AGG - chr4_2:62972711-62972730 Msa0614060:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 62972557 62973973 62972557 ID=Msa0614060;Name=Msa0614060
chr4_2 mRNA 62972557 62973973 62972557 ID=Msa0614060-mRNA-1;Parent=Msa0614060;Name=Msa0614060-mRNA-1;_AED=0.09;_eAED=0.09;_QI=146|1|1|1|1|1|4|393|176
chr4_2 exon 62972557 62973078 62972557 ID=Msa0614060-mRNA-1:exon:17452;Parent=Msa0614060-mRNA-1
chr4_2 exon 62973195 62973311 62973195 ID=Msa0614060-mRNA-1:exon:17451;Parent=Msa0614060-mRNA-1
chr4_2 exon 62973441 62973612 62973441 ID=Msa0614060-mRNA-1:exon:17450;Parent=Msa0614060-mRNA-1
chr4_2 exon 62973715 62973973 62973715 ID=Msa0614060-mRNA-1:exon:17449;Parent=Msa0614060-mRNA-1
chr4_2 five_prime_UTR 62973828 62973973 62973828 ID=Msa0614060-mRNA-1:five_prime_utr;Parent=Msa0614060-mRNA-1
chr4_2 CDS 62973715 62973827 62973715 ID=Msa0614060-mRNA-1:cds;Parent=Msa0614060-mRNA-1
chr4_2 CDS 62973441 62973612 62973441 ID=Msa0614060-mRNA-1:cds;Parent=Msa0614060-mRNA-1
chr4_2 CDS 62973195 62973311 62973195 ID=Msa0614060-mRNA-1:cds;Parent=Msa0614060-mRNA-1
chr4_2 CDS 62972950 62973078 62972950 ID=Msa0614060-mRNA-1:cds;Parent=Msa0614060-mRNA-1
chr4_2 three_prime_UTR 62972557 62972949 62972557 ID=Msa0614060-mRNA-1:three_prime_utr;Parent=Msa0614060-mRNA-1
Gene Sequence

>Msa0614060

ATGGAGGAGGTGGAGAAGGTGAAGGCTGAGGCAGTGCAAATGATAGGAATGTTTCAAGTACTACCAAGGCTCGTAGTGTTCGATTTAGATTATACTCTTTGGCCTTTCTACTGTGAGTGCCGCTCCAAGCACGACACACCTTCTTTGTTTCCACATTCCAGAGGCATCTTGAGTGCACTCAAAGATGAAGGAATTGATGCTGCCATTGCTTCCAAATCACCAACTCCACACATAGCAACAACGTATCTTGACAAACTCAAAATCACCTCAATGTTTGTCGCCCAGGAAATATTTTACAGCTCGACACACAAAACAGAACATTTTCAGAAAATTCATTCAAAGACCGGTGTCCCCTACAACTCTATGCTCTTTTTCGACGATGATAACAATAACATGAAACCGGTTTCAAATTTGGGAGTTACAAGTATTTTGGTTAACAATGGCTTAAATCTAGGAGTATTTAGAGAAGGGCTCACAAGATTTTCGCAAAACTGGGATGCCTCAAAGAACAAGCAGAAAAGGCGCAAGTAA

Protein sequence

>Msa0614060

MEEVEKVKAEAVQMIGMFQVLPRLVVFDLDYTLWPFYCECRSKHDTPSLFPHSRGILSALKDEGIDAAIASKSPTPHIATTYLDKLKITSMFVAQEIFYSSTHKTEHFQKIHSKTGVPYNSMLFFDDDNNNMKPVSNLGVTSILVNNGLNLGVFREGLTRFSQNWDASKNKQKRRK*