AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0170690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170690 MtrunA17_Chr1g0188291 98.160 326 6 0 1 326 1 326 0.0 656
Msa0170690 MtrunA17_Chr2g0329451 66.772 316 105 0 8 323 14 329 3.82e-159 447
Msa0170690 MtrunA17_Chr4g0033631 66.246 317 107 0 8 324 15 331 5.03e-156 440
Msa0170690 MtrunA17_Chr6g0474331 64.873 316 109 2 8 321 28 343 2.95e-154 436
Msa0170690 MtrunA17_Chr1g0204101 63.175 315 114 2 8 320 23 337 4.09e-148 420
Msa0170690 MtrunA17_Chr5g0434971 66.026 312 105 1 5 315 64 375 2.72e-145 415
Msa0170690 MtrunA17_Chr1g0183241 50.625 320 135 4 8 325 110 408 1.81e-105 314
Msa0170690 MtrunA17_Chr1g0171921 48.348 333 145 6 8 326 183 502 3.38e-97 297
Msa0170690 MtrunA17_Chr1g0177771 49.363 314 139 5 8 317 253 550 3.28e-96 295
Msa0170690 MtrunA17_Chr1g0183661 50.545 275 122 4 34 306 14 276 2.30e-92 277
Msa0170690 MtrunA17_Chr1g0177321 46.519 316 140 5 8 319 179 469 6.92e-89 274
Msa0170690 MtrunA17_Chr7g0246421 59.116 181 72 2 135 313 5 185 4.59e-72 221
Msa0170690 MtrunA17_Chr1g0176221 45.339 236 100 2 85 320 1 207 1.59e-66 207
Msa0170690 MtrunA17_Chr5g0419371 31.897 348 198 5 7 318 209 553 4.85e-53 183
Msa0170690 MtrunA17_Chr4g0008441 34.906 318 174 4 34 318 133 450 1.11e-51 177
Msa0170690 MtrunA17_Chr7g0246411 57.143 133 55 1 5 135 38 170 4.80e-48 159
Msa0170690 MtrunA17_Chr4g0020911 53.030 132 60 1 134 263 58 189 1.86e-43 148
Msa0170690 MtrunA17_Chr1g0184491 24.646 353 224 9 3 324 70 411 2.09e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0170690 AT4G10260.1 78.233 317 69 0 7 323 5 321 0.0 523
Msa0170690 AT3G59480.1 66.875 320 106 0 2 321 4 323 1.56e-161 454
Msa0170690 AT1G06020.1 67.296 318 104 0 8 325 10 327 1.11e-159 450
Msa0170690 AT1G06030.1 67.188 320 105 0 2 321 5 324 6.63e-159 447
Msa0170690 AT2G31390.1 66.879 314 104 0 8 321 9 322 1.92e-158 446
Msa0170690 AT1G66430.1 63.950 319 114 1 2 319 59 377 1.97e-151 431
Msa0170690 AT5G51830.2 63.863 321 114 2 8 326 23 343 1.71e-150 426
Msa0170690 AT5G51830.1 63.863 321 114 2 8 326 23 343 1.71e-150 426
Msa0170690 AT3G54090.1 34.072 361 190 6 7 320 102 461 7.44e-56 188
Msa0170690 AT1G50390.1 52.071 169 52 1 153 321 1 140 1.94e-52 170
Msa0170690 AT1G69200.1 31.307 329 190 4 7 300 205 532 5.53e-47 167
Msa0170690 AT1G06730.1 24.917 301 205 6 40 327 132 424 3.42e-12 67.4
Msa0170690 AT1G17160.1 23.973 292 192 7 39 321 105 375 6.32e-11 63.2

Find 147 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCAGTGGTACCTTAAATT+TGG 0.125187 1_4:-54999069 None:intergenic
TGTCTCACAAATATAGTTTA+AGG 0.131310 1_4:-54999435 None:intergenic
GTTAAAGTCTCTCTCAATTT+TGG 0.146753 1_4:-55001723 None:intergenic
GCAAGAGACCCTTCTATATT+TGG 0.155547 1_4:+55001560 Msa0170690:CDS
AAATAGGTTTCCTAAATAAA+TGG 0.170672 1_4:+54999033 Msa0170690:five_prime_UTR
CACACTGGTCCCATTTATTT+AGG 0.200091 1_4:-54999043 None:intergenic
ACCTTCTCTAGCAGCTTTCA+TGG 0.275867 1_4:-55000610 None:intergenic
CAAGAGACCCTTCTATATTT+GGG 0.290405 1_4:+55001561 Msa0170690:CDS
GGCAGCATTGCCACCAAGTT+TGG 0.291331 1_4:-54999675 None:intergenic
CTTTGATTAATTGAATAAAT+AGG 0.291700 1_4:+54998845 Msa0170690:five_prime_UTR
TTGTATGAAGGTCTTATTAA+AGG 0.295536 1_4:-55001921 None:intergenic
ATGTTTGAAATATAATTATA+AGG 0.304077 1_4:-54999236 None:intergenic
CAAGTACAACTCATCCCTTT+TGG 0.324093 1_4:-54998740 None:intergenic
CTAAGCATTCAATCATATAT+TGG 0.327482 1_4:-54999263 None:intergenic
TCCAGTGGTACCTTAAATTT+GGG 0.329901 1_4:-54999068 None:intergenic
TAATAACAAACACAAATATA+TGG 0.356452 1_4:+54999356 Msa0170690:five_prime_UTR
TTGCAACAGAATGAAGGATT+TGG 0.357767 1_4:-54997953 None:intergenic
TGAAATTTCTGCTGGTGATT+TGG 0.359064 1_4:+54998709 Msa0170690:five_prime_UTR
AAGCATACCCCAAATATAGA+AGG 0.366100 1_4:-55001569 None:intergenic
AATACAAAGATATTCCATTA+TGG 0.367235 1_4:+55000540 Msa0170690:CDS
CTTACAAAAGCATTCATTCT+CGG 0.367708 1_4:+54999119 Msa0170690:five_prime_UTR
AACAGAGACATGCTATCTTT+TGG 0.368243 1_4:+54998643 Msa0170690:five_prime_UTR
ACAGCACAAGCCACATTGGC+AGG 0.372362 1_4:-54999650 None:intergenic
CAAAAGGGATGAGTTGTACT+TGG 0.379437 1_4:+54998741 Msa0170690:five_prime_UTR
TCTGCTGAGGCTGCTAGGTC+TGG 0.380493 1_4:+55000681 Msa0170690:CDS
AAACAAATTAAAGAATGTTC+TGG 0.384541 1_4:-54997822 None:intergenic
AAGAAGCTGTTATGTCTCTA+TGG 0.387207 1_4:+55000931 Msa0170690:CDS
CTTGGTAGCAGTCAAATGTT+TGG 0.389927 1_4:-54998025 None:intergenic
ACATTGGCAGGGGCACCGCC+AGG 0.390542 1_4:-54999638 None:intergenic
CAAATGTCAGGCTTCCTTTG+TGG 0.390789 1_4:+55000655 Msa0170690:CDS
TAAGACTAATGGATCCATAA+TGG 0.395043 1_4:-55000554 None:intergenic
ATTTCAAAGGAAAGTTTAGT+TGG 0.395477 1_4:-55001847 None:intergenic
CAGGTAGGGGATGATGAGTT+TGG 0.399164 1_4:+55000327 Msa0170690:intron
TGGTTCTGAAATAAGACTAA+TGG 0.406052 1_4:-55000565 None:intergenic
AATTGCGCTGCTTGGTCTCA+TGG 0.406622 1_4:-54999191 None:intergenic
ACAACTCTTCTCCTTGTTGA+AGG 0.406999 1_4:-54998069 None:intergenic
TCGCCGAATGATATCACTAA+TGG 0.409144 1_4:-54999545 None:intergenic
GGTCTGGAATCAAAAGCATT+TGG 0.412730 1_4:+55000697 Msa0170690:CDS
AACAAATTAAAGAATGTTCT+GGG 0.419863 1_4:-54997821 None:intergenic
ACCATGTAGATCTGCTCATA+TGG 0.422423 1_4:+55000584 Msa0170690:CDS
AAGCCTGACATTTGGATCAT+AGG 0.423973 1_4:-55000646 None:intergenic
TTTGTGACATTGAGGAAAGA+TGG 0.427613 1_4:+55000435 Msa0170690:CDS
CCAGTGTGAACCCAAATTTA+AGG 0.435301 1_4:+54999058 Msa0170690:five_prime_UTR
GCTTGTGCTGTGTCCAAACT+TGG 0.436119 1_4:+54999662 Msa0170690:CDS
TGTAAATTGCAACAGAATGA+AGG 0.436838 1_4:-54997959 None:intergenic
AGCTCACTCAACTTGGTGTT+AGG 0.443465 1_4:+54998151 Msa0170690:five_prime_UTR
AATAGGTTTCCTAAATAAAT+GGG 0.443634 1_4:+54999034 Msa0170690:five_prime_UTR
ATAACAGCTTCTTCATTCTC+AGG 0.444898 1_4:-55000921 None:intergenic
CACAAAGGAAGCCTGACATT+TGG 0.445582 1_4:-55000654 None:intergenic
AGTTTAGTTGGCTTTAGAGC+TGG 0.453062 1_4:-55001835 None:intergenic
AACACCAAGTTGAGTGAGCT+TGG 0.455326 1_4:-54998148 None:intergenic
GTGAAGGCAATTGACACAAC+TGG 0.456721 1_4:+55001497 Msa0170690:CDS
AGACACATCTGGTGTATCCT+TGG 0.457720 1_4:+54999589 Msa0170690:CDS
TTCTGAGCCTCTTCAGCAGT+TGG 0.458744 1_4:-55001804 None:intergenic
AGTTGAGTGAGCTTGGACTC+AGG 0.458878 1_4:-54998141 None:intergenic
GGCAAAGTTACACTTACCTT+GGG 0.470688 1_4:-54998048 None:intergenic
CACTCCTAGTGGGGCTAATG+AGG 0.472036 1_4:+54998682 Msa0170690:five_prime_UTR
TCCTTTGTGGCCTTCTGCTG+AGG 0.474259 1_4:+55000668 Msa0170690:CDS
AAGAAGAAGAACAAGATGTC+AGG 0.478396 1_4:+54999512 Msa0170690:exon
ACTGTTCTAAAAGAAATTAG+TGG 0.478563 1_4:+54999149 Msa0170690:five_prime_UTR
TATGTCCATGGAAAATTACT+TGG 0.480875 1_4:-54998614 None:intergenic
TATAATTATAAGGTATGTAA+TGG 0.481825 1_4:-54999226 None:intergenic
TTAACATTTGCAAATGCTTG+TGG 0.485254 1_4:+55001741 Msa0170690:CDS
ATTGAGGAAAGATGGAGAGA+GGG 0.488808 1_4:+55000443 Msa0170690:CDS
CTCAACTTGGTGTTAGGCAG+TGG 0.492268 1_4:+54998157 Msa0170690:five_prime_UTR
ATTGGCAGGGGCACCGCCAG+GGG 0.492610 1_4:-54999636 None:intergenic
GGCCTTCTGCTGAGGCTGCT+AGG 0.493211 1_4:+55000676 Msa0170690:CDS
TGCACTTCCAACTGCTGAAG+AGG 0.495831 1_4:+55001797 Msa0170690:CDS
CATTGGCAGGGGCACCGCCA+GGG 0.499364 1_4:-54999637 None:intergenic
GATCCATTAGTGATATCATT+CGG 0.499392 1_4:+54999542 Msa0170690:CDS
AGGCAAAGTTACACTTACCT+TGG 0.501016 1_4:-54998049 None:intergenic
TCTTCAGCAGTTGGAAGTGC+AGG 0.503583 1_4:-55001795 None:intergenic
ATTAAGAACCTTGCCGATGA+AGG 0.504091 1_4:-54999696 None:intergenic
GACCTAGCAGCCTCAGCAGA+AGG 0.506010 1_4:-55000678 None:intergenic
AAGGATACACCAGATGTGTC+TGG 0.508328 1_4:-54999587 None:intergenic
AAGCTGCTTATTATCACTGA+TGG 0.515902 1_4:+55000966 Msa0170690:CDS
AATTTGTCTAGACTCTAGAA+AGG 0.516976 1_4:+54997854 Msa0170690:five_prime_UTR
TGTGCTGTGTCCAAACTTGG+TGG 0.518945 1_4:+54999665 Msa0170690:CDS
CTAGGGGAGTGCATTTAAGA+TGG 0.521265 1_4:-54998923 None:intergenic
CACAGAGGCAAGAACTGCAT+TGG 0.524471 1_4:+55000410 Msa0170690:CDS
TGTACTTGGGATGTGTCTGT+TGG 0.525073 1_4:+54998755 Msa0170690:five_prime_UTR
GAGTCCAAGCTCACTCAACT+TGG 0.526860 1_4:+54998144 Msa0170690:five_prime_UTR
AGCAGTTGGAAGTGCAGGAA+TGG 0.528605 1_4:-55001790 None:intergenic
TGTCCTATGATCCAAATGTC+AGG 0.532074 1_4:+55000643 Msa0170690:CDS
AATCAAAAGCATTTGGAATG+AGG 0.534914 1_4:+55000704 Msa0170690:CDS
CATTGAGGAAAGATGGAGAG+AGG 0.536347 1_4:+55000442 Msa0170690:CDS
GAGTCTAGACAAATTAATCA+AGG 0.539027 1_4:-54997846 None:intergenic
ACCCAAATTTAAGGTACCAC+TGG 0.540434 1_4:+54999067 Msa0170690:five_prime_UTR
ACATATCTAATGTATGAAGA+TGG 0.540624 1_4:+54998818 Msa0170690:five_prime_UTR
CATTCTGTTGCAATTTACAA+TGG 0.540971 1_4:+54997963 Msa0170690:five_prime_UTR
TATTATCACTGATGGAGAGA+AGG 0.541140 1_4:+55000974 Msa0170690:CDS
TTGGGATGTGTCTGTTGGTG+TGG 0.542437 1_4:+54998760 Msa0170690:five_prime_UTR
GGTGGCAATGCTGCCTTCAT+CGG 0.543040 1_4:+54999683 Msa0170690:CDS
AGTTACACTTACCTTGGGCT+TGG 0.544555 1_4:-54998043 None:intergenic
AGTCAAATGTTTGGTTTGTG+AGG 0.547845 1_4:-54998016 None:intergenic
TTCAGTAACATATCAGCACT+AGG 0.548072 1_4:-55000486 None:intergenic
GCAATTGACACAACTGGTGC+TGG 0.548770 1_4:+55001503 Msa0170690:CDS
AATGAATATAGCTAGTCCTC+TGG 0.549042 1_4:-55001881 None:intergenic
TATGCTTTCATCAAAGCCCC+TGG 0.549304 1_4:+54999620 Msa0170690:CDS
GAATGAGGCTGATTTCATCA+AGG 0.550630 1_4:+55000719 Msa0170690:CDS
GCAGGTGTCACAGAGAAACT+TGG 0.551407 1_4:+54998096 Msa0170690:five_prime_UTR
AGGAGAAGAGTTGTAAGAGC+AGG 0.552714 1_4:+54998078 Msa0170690:five_prime_UTR
GTCCATGGAAAATTACTTGG+AGG 0.553197 1_4:-54998611 None:intergenic
ATTATCACTGATGGAGAGAA+GGG 0.554637 1_4:+55000975 Msa0170690:CDS
GGATTATCATCAAATTTCAA+AGG 0.559045 1_4:-55001860 None:intergenic
TAGGGGATGATGAGTTTGGA+AGG 0.562525 1_4:+55000331 Msa0170690:CDS
AAGTGAAGGTCACTCCTAGT+GGG 0.564562 1_4:+54998672 Msa0170690:five_prime_UTR
CAGCACAAGCCACATTGGCA+GGG 0.565146 1_4:-54999649 None:intergenic
AGCACAAGCCACATTGGCAG+GGG 0.566309 1_4:-54999648 None:intergenic
TCCATGGAAAATTACTTGGA+GGG 0.566600 1_4:-54998610 None:intergenic
CCTTAAATTTGGGTTCACAC+TGG 0.572685 1_4:-54999058 None:intergenic
GCCTCAGCAGAAGGCCACAA+AGG 0.575264 1_4:-55000669 None:intergenic
GCCATATGAGCAGATCTACA+TGG 0.575838 1_4:-55000585 None:intergenic
AAAGTGAAGGTCACTCCTAG+TGG 0.587646 1_4:+54998671 Msa0170690:five_prime_UTR
TCAGTAACATATCAGCACTA+GGG 0.589086 1_4:-55000485 None:intergenic
GAGGCAGTTGAAATTTCTGC+TGG 0.589901 1_4:+54998701 Msa0170690:five_prime_UTR
CAAATTAAAGAATGTTCTGG+GGG 0.591999 1_4:-54997819 None:intergenic
AGCATACCCCAAATATAGAA+GGG 0.593760 1_4:-55001568 None:intergenic
GGACACAGCACAAGCCACAT+TGG 0.596726 1_4:-54999654 None:intergenic
GCCATGAAAGCTGCTAGAGA+AGG 0.601701 1_4:+55000609 Msa0170690:CDS
CAATGCTGCCTTCATCGGCA+AGG 0.604108 1_4:+54999688 Msa0170690:CDS
TGGCGGTGCCCCTGCCAATG+TGG 0.604697 1_4:+54999640 Msa0170690:CDS
TGAGTGAGCTTGGACTCAGG+AGG 0.606187 1_4:-54998138 None:intergenic
AAAAGGGATGAGTTGTACTT+GGG 0.609307 1_4:+54998742 Msa0170690:five_prime_UTR
ATGGCATCATCATCATGTGT+AGG 0.613363 1_4:+54997982 Msa0170690:five_prime_UTR
AGCAATGTGTACAACACAGA+AGG 0.614417 1_4:+55001764 Msa0170690:CDS
GGGTTGTAGATATGTCACTA+AGG 0.615724 1_4:+55000995 Msa0170690:CDS
GTGTAACTTTGCCTTCAACA+AGG 0.618419 1_4:+54998058 Msa0170690:five_prime_UTR
ACAAATTAAAGAATGTTCTG+GGG 0.620001 1_4:-54997820 None:intergenic
AAGAGACCCTTCTATATTTG+GGG 0.620591 1_4:+55001562 Msa0170690:CDS
GGTAAGTGGGTTCTCAGTGA+AGG 0.620599 1_4:+55001481 Msa0170690:CDS
GAAATTTGATGATAATCCAG+AGG 0.620620 1_4:+55001865 Msa0170690:three_prime_UTR
AGCATATAAATATTCAACGA+TGG 0.620674 1_4:-54999386 None:intergenic
TCTGTTGCATCATATGTCCA+TGG 0.622988 1_4:-54998626 None:intergenic
AAAACAATAATAACTGACAA+AGG 0.628440 1_4:+54999480 Msa0170690:five_prime_UTR
GAGTGAGCTTGGACTCAGGA+GGG 0.632998 1_4:-54998137 None:intergenic
GAAAGAATCTGAATTGAACA+TGG 0.634038 1_4:+55000506 Msa0170690:CDS
GCAATGTGTACAACACAGAA+GGG 0.647308 1_4:+55001765 Msa0170690:CDS
TATCTAATGTATGAAGATGG+AGG 0.647725 1_4:+54998821 Msa0170690:five_prime_UTR
ACTGCCTCATTAGCCCCACT+AGG 0.662701 1_4:-54998686 None:intergenic
TGGTGCACTTCTCAGAGATG+TGG 0.663280 1_4:+55001538 Msa0170690:CDS
ATGAAAGCTGCTAGAGAAGG+TGG 0.665141 1_4:+55000612 Msa0170690:CDS
TTTGACTGCTACCAAGCCCA+AGG 0.672230 1_4:+54998032 Msa0170690:five_prime_UTR
GAAAGCATAAGATTCAGCCA+AGG 0.678603 1_4:-54999606 None:intergenic
GCTTTCATCAAAGCCCCTGG+CGG 0.681461 1_4:+54999623 Msa0170690:CDS
AGTGAAGGTCACTCCTAGTG+GGG 0.682734 1_4:+54998673 Msa0170690:five_prime_UTR
AAATTAAAGAATGTTCTGGG+GGG 0.750674 1_4:-54997818 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTTATTTTAATGAAAA+AGG + chr1_4:54998289-54998308 Msa0170690:intron 10.0%
!!! TATTTTAAGACTATAAAAAT+AGG + chr1_4:54999017-54999036 Msa0170690:five_prime_UTR 10.0%
!!! ATGTTTGAAATATAATTATA+AGG - chr1_4:54999239-54999258 None:intergenic 10.0%
!! CTTTGATTAATTGAATAAAT+AGG + chr1_4:54998845-54998864 Msa0170690:five_prime_UTR 15.0%
!!! TAACTTACAGTTTTTTTTTA+AGG - chr1_4:54998977-54998996 None:intergenic 15.0%
!! TATAATTATAAGGTATGTAA+TGG - chr1_4:54999229-54999248 None:intergenic 15.0%
!! TAATAACAAACACAAATATA+TGG + chr1_4:54999356-54999375 Msa0170690:five_prime_UTR 15.0%
!! ATATATACTTAAAATGAATG+CGG + chr1_4:54999769-54999788 Msa0170690:intron 15.0%
!!! TATAGAATATTGATAATATG+AGG + chr1_4:55000226-55000245 Msa0170690:intron 15.0%
!!! ATAGAATATTGATAATATGA+GGG + chr1_4:55000227-55000246 Msa0170690:intron 15.0%
!!! TTGAATTTGAAATTTCTTTA+TGG + chr1_4:55000754-55000773 Msa0170690:intron 15.0%
!! TAAAAATAATCTTCTTGAAT+GGG - chr1_4:55001153-55001172 None:intergenic 15.0%
!! ATAAAAATAATCTTCTTGAA+TGG - chr1_4:55001154-55001173 None:intergenic 15.0%
!!! ATTTTTATCTATTCACAAAT+AGG + chr1_4:55001166-55001185 Msa0170690:intron 15.0%
!!! TTTTTATCTATTCACAAATA+GGG + chr1_4:55001167-55001186 Msa0170690:intron 15.0%
!!! AATGAGAATTATTTTTACAA+AGG - chr1_4:55001657-55001676 None:intergenic 15.0%
!! TTTGTAAAAATAATTCTCAT+TGG + chr1_4:55001656-55001675 Msa0170690:intron 15.0%
!! AACAAATTAAAGAATGTTCT+GGG - chr1_4:54997824-54997843 None:intergenic 20.0%
!! AAACAAATTAAAGAATGTTC+TGG - chr1_4:54997825-54997844 None:intergenic 20.0%
!!! GTTAAGTTTATCTTTTCTTT+TGG - chr1_4:54997903-54997922 None:intergenic 20.0%
!!! TTTTCTTACATTTTTTCTCA+TGG + chr1_4:54998254-54998273 Msa0170690:intron 20.0%
!! TACTGTTAAAGTCATATATA+TGG - chr1_4:54998428-54998447 None:intergenic 20.0%
!!! AAACGTTTTTTATGATTTGA+CGG + chr1_4:54998463-54998482 Msa0170690:intron 20.0%
!! ACAACATAAAAAATCTTTCA+CGG + chr1_4:54998500-54998519 Msa0170690:intron 20.0%
!! AAATAGGTTTCCTAAATAAA+TGG + chr1_4:54999033-54999052 Msa0170690:five_prime_UTR 20.0%
!! AATAGGTTTCCTAAATAAAT+GGG + chr1_4:54999034-54999053 Msa0170690:five_prime_UTR 20.0%
!! AAAACAATAATAACTGACAA+AGG + chr1_4:54999480-54999499 Msa0170690:five_prime_UTR 20.0%
!! GATAAACATGATAGTAAAAT+GGG - chr1_4:54999733-54999752 None:intergenic 20.0%
!!! GCATTCATTTTAAGTATATA+TGG - chr1_4:54999770-54999789 None:intergenic 20.0%
!! ATAAATTTCAATGACCATAT+TGG - chr1_4:54999967-54999986 None:intergenic 20.0%
!! ATATGGTCATTGAAATTTAT+AGG + chr1_4:54999967-54999986 Msa0170690:intron 20.0%
!! AATACAAAGATATTCCATTA+TGG + chr1_4:55000540-55000559 Msa0170690:CDS 20.0%
!! TTTAAAAGAATCTGTAAAAG+TGG + chr1_4:55000827-55000846 Msa0170690:intron 20.0%
!!! TGAAATTTTTGTTTGCTTTA+TGG + chr1_4:55001680-55001699 Msa0170690:intron 20.0%
! ACAAATTAAAGAATGTTCTG+GGG - chr1_4:54997823-54997842 None:intergenic 25.0%
! AAGAAATGTGGTATTTACTT+GGG - chr1_4:54998183-54998202 None:intergenic 25.0%
! AAGAAGATAATGAAGAAATG+TGG - chr1_4:54998195-54998214 None:intergenic 25.0%
! TTAGAATAATAGACATGATG+AGG - chr1_4:54998226-54998245 None:intergenic 25.0%
! TTAACGAGATTAATACACTA+TGG + chr1_4:54998367-54998386 Msa0170690:intron 25.0%
! ATATGACTTTAACAGTAGTT+AGG + chr1_4:54998431-54998450 Msa0170690:intron 25.0%
! TTGGTGTAAATAAAAACAGA+TGG + chr1_4:54998582-54998601 Msa0170690:intron 25.0%
! TGGTGTAAATAAAAACAGAT+GGG + chr1_4:54998583-54998602 Msa0170690:intron 25.0%
! ACATATCTAATGTATGAAGA+TGG + chr1_4:54998818-54998837 Msa0170690:five_prime_UTR 25.0%
!!! ACTGTTCTAAAAGAAATTAG+TGG + chr1_4:54999149-54999168 Msa0170690:five_prime_UTR 25.0%
! CTAAGCATTCAATCATATAT+TGG - chr1_4:54999266-54999285 None:intergenic 25.0%
! AGCATATAAATATTCAACGA+TGG - chr1_4:54999389-54999408 None:intergenic 25.0%
! TGTCTCACAAATATAGTTTA+AGG - chr1_4:54999438-54999457 None:intergenic 25.0%
! CGATAAACATGATAGTAAAA+TGG - chr1_4:54999734-54999753 None:intergenic 25.0%
! TTCTGAGTAAATATCCAATA+TGG + chr1_4:54999950-54999969 Msa0170690:intron 25.0%
! AGTTCTGTCAAAAATTGTAA+TGG - chr1_4:55000062-55000081 None:intergenic 25.0%
! TTATCTTATCAAATGCATCT+CGG + chr1_4:55000110-55000129 Msa0170690:intron 25.0%
!!! TCGTATGTCATTTTTTTGTT+AGG - chr1_4:55000307-55000326 None:intergenic 25.0%
! TATGGAAGTCTATTAAATGA+TGG + chr1_4:55000772-55000791 Msa0170690:intron 25.0%
! AAACTTACCATTCTCTATAT+AGG + chr1_4:55000860-55000879 Msa0170690:intron 25.0%
!!! TTTTCAAAATATGGATTGGA+TGG - chr1_4:55001027-55001046 None:intergenic 25.0%
!! AAAGAGCTCTTTTCAAAATA+TGG - chr1_4:55001036-55001055 None:intergenic 25.0%
!! TTTTGTTAACTGATCATTAG+TGG + chr1_4:55001087-55001106 Msa0170690:intron 25.0%
! AGATAAAATTAAGTCAAGCT+GGG - chr1_4:55001344-55001363 None:intergenic 25.0%
! AAGATAAAATTAAGTCAAGC+TGG - chr1_4:55001345-55001364 None:intergenic 25.0%
! TCAAACAATATTTCCAAAGA+TGG - chr1_4:55001441-55001460 None:intergenic 25.0%
!! GTTTGAATGCAGAATTTTAA+AGG + chr1_4:55001455-55001474 Msa0170690:intron 25.0%
!!! AATGCAGAATTTTAAAGGAA+GGG + chr1_4:55001460-55001479 Msa0170690:intron 25.0%
! ATTTCAAAGGAAAGTTTAGT+TGG - chr1_4:55001850-55001869 None:intergenic 25.0%
! GGATTATCATCAAATTTCAA+AGG - chr1_4:55001863-55001882 None:intergenic 25.0%
! AAATTAAAGAATGTTCTGGG+GGG - chr1_4:54997821-54997840 None:intergenic 30.0%
CAAATTAAAGAATGTTCTGG+GGG - chr1_4:54997822-54997841 None:intergenic 30.0%
GAGTCTAGACAAATTAATCA+AGG - chr1_4:54997849-54997868 None:intergenic 30.0%
! AATTTGTCTAGACTCTAGAA+AGG + chr1_4:54997854-54997873 Msa0170690:five_prime_UTR 30.0%
TGTAAATTGCAACAGAATGA+AGG - chr1_4:54997962-54997981 None:intergenic 30.0%
CATTCTGTTGCAATTTACAA+TGG + chr1_4:54997963-54997982 Msa0170690:five_prime_UTR 30.0%
GAAGAAATGTGGTATTTACT+TGG - chr1_4:54998184-54998203 None:intergenic 30.0%
!!! TCTTACATTTTTTCTCATGG+TGG + chr1_4:54998257-54998276 Msa0170690:intron 30.0%
GGTGTAAATAAAAACAGATG+GGG + chr1_4:54998584-54998603 Msa0170690:intron 30.0%
TATGTCCATGGAAAATTACT+TGG - chr1_4:54998617-54998636 None:intergenic 30.0%
!! ATTTGGTTGTTTTCCCAAAA+GGG + chr1_4:54998726-54998745 Msa0170690:five_prime_UTR 30.0%
TATCTAATGTATGAAGATGG+AGG + chr1_4:54998821-54998840 Msa0170690:five_prime_UTR 30.0%
! AGAGCAAAAAGTATAGTCTA+GGG - chr1_4:54998943-54998962 None:intergenic 30.0%
! AAGAGCAAAAAGTATAGTCT+AGG - chr1_4:54998944-54998963 None:intergenic 30.0%
! TACCACTGGATAAATTTTTG+TGG + chr1_4:54999081-54999100 Msa0170690:five_prime_UTR 30.0%
! GAGAATGAATGCTTTTGTAA+GGG - chr1_4:54999120-54999139 None:intergenic 30.0%
!! CTTACAAAAGCATTCATTCT+CGG + chr1_4:54999119-54999138 Msa0170690:five_prime_UTR 30.0%
GATCCATTAGTGATATCATT+CGG + chr1_4:54999542-54999561 Msa0170690:CDS 30.0%
ATACTTAAAATGAATGCGGA+TGG + chr1_4:54999773-54999792 Msa0170690:intron 30.0%
TACTTAAAATGAATGCGGAT+GGG + chr1_4:54999774-54999793 Msa0170690:intron 30.0%
ATTTACGTATAGTCTACCAA+CGG - chr1_4:54999867-54999886 None:intergenic 30.0%
GTTTGATGTGGTATTATATG+AGG + chr1_4:54999903-54999922 Msa0170690:intron 30.0%
TTGATAAGATAACACAACTG+AGG - chr1_4:55000102-55000121 None:intergenic 30.0%
GAGTAGATATCCTGTTTAAT+CGG - chr1_4:55000276-55000295 None:intergenic 30.0%
ACAAAAAAATGACATACGAC+AGG + chr1_4:55000308-55000327 Msa0170690:intron 30.0%
AAAAATGGAGTGAATACAGA+TGG + chr1_4:55000375-55000394 Msa0170690:CDS 30.0%
GAAAGAATCTGAATTGAACA+TGG + chr1_4:55000506-55000525 Msa0170690:CDS 30.0%
! TAAGACTAATGGATCCATAA+TGG - chr1_4:55000557-55000576 None:intergenic 30.0%
!! TGGTTCTGAAATAAGACTAA+TGG - chr1_4:55000568-55000587 None:intergenic 30.0%
!! AATCAAAAGCATTTGGAATG+AGG + chr1_4:55000704-55000723 Msa0170690:CDS 30.0%
GAGGATATAACAGAAAACTA+GGG + chr1_4:55000794-55000813 Msa0170690:intron 30.0%
TCACTTACCTATATAGAGAA+TGG - chr1_4:55000870-55000889 None:intergenic 30.0%
! GCTCTTTTCAAAATATGGAT+TGG - chr1_4:55001031-55001050 None:intergenic 30.0%
GAAAATAGGATAGCAACTTA+TGG - chr1_4:55001284-55001303 None:intergenic 30.0%
TATGGAGAGCTTATGAAAAT+AGG - chr1_4:55001298-55001317 None:intergenic 30.0%
! ACTGTTTTCATAAGCTACTA+TGG - chr1_4:55001316-55001335 None:intergenic 30.0%
CTAAACTATTCATCCATCTT+TGG + chr1_4:55001425-55001444 Msa0170690:intron 30.0%
!! GAATGCAGAATTTTAAAGGA+AGG + chr1_4:55001459-55001478 Msa0170690:intron 30.0%
!! AATTTTAAAGGAAGGGTAAG+TGG + chr1_4:55001467-55001486 Msa0170690:CDS 30.0%
!! ATTTTAAAGGAAGGGTAAGT+GGG + chr1_4:55001468-55001487 Msa0170690:CDS 30.0%
CTTTATGGAATTCAACATGA+AGG + chr1_4:55001695-55001714 Msa0170690:intron 30.0%
! GTTAAAGTCTCTCTCAATTT+TGG - chr1_4:55001726-55001745 None:intergenic 30.0%
TTAACATTTGCAAATGCTTG+TGG + chr1_4:55001741-55001760 Msa0170690:CDS 30.0%
! GAAATTTGATGATAATCCAG+AGG + chr1_4:55001865-55001884 Msa0170690:three_prime_UTR 30.0%
TTGCAACAGAATGAAGGATT+TGG - chr1_4:54997956-54997975 None:intergenic 35.0%
!! AGTCAAATGTTTGGTTTGTG+AGG - chr1_4:54998019-54998038 None:intergenic 35.0%
! TGACTGTGTACACACATTTT+TGG + chr1_4:54998563-54998582 Msa0170690:intron 35.0%
TCCATGGAAAATTACTTGGA+GGG - chr1_4:54998613-54998632 None:intergenic 35.0%
! AACAGAGACATGCTATCTTT+TGG + chr1_4:54998643-54998662 Msa0170690:five_prime_UTR 35.0%
!! TCTTTTGGAAGGAAAAGTGA+AGG + chr1_4:54998658-54998677 Msa0170690:five_prime_UTR 35.0%
TGAAATTTCTGCTGGTGATT+TGG + chr1_4:54998709-54998728 Msa0170690:five_prime_UTR 35.0%
!! GATTTGGTTGTTTTCCCAAA+AGG + chr1_4:54998725-54998744 Msa0170690:five_prime_UTR 35.0%
! AAGTACAACTCATCCCTTTT+GGG - chr1_4:54998742-54998761 None:intergenic 35.0%
AAAAGGGATGAGTTGTACTT+GGG + chr1_4:54998742-54998761 Msa0170690:five_prime_UTR 35.0%
! GAGCAAAAAGTATAGTCTAG+GGG - chr1_4:54998942-54998961 None:intergenic 35.0%
TCCAGTGGTACCTTAAATTT+GGG - chr1_4:54999071-54999090 None:intergenic 35.0%
ATCCAGTGGTACCTTAAATT+TGG - chr1_4:54999072-54999091 None:intergenic 35.0%
CACCACAAAAATTTATCCAG+TGG - chr1_4:54999086-54999105 None:intergenic 35.0%
! CGAGAATGAATGCTTTTGTA+AGG - chr1_4:54999121-54999140 None:intergenic 35.0%
AAGAAGAAGAACAAGATGTC+AGG + chr1_4:54999512-54999531 Msa0170690:exon 35.0%
TTTACGTATAGTCTACCAAC+GGG - chr1_4:54999866-54999885 None:intergenic 35.0%
CTATACGTAAATATTCACCG+AGG + chr1_4:54999875-54999894 Msa0170690:intron 35.0%
GTAAATATTCACCGAGGTTA+TGG + chr1_4:54999881-54999900 Msa0170690:intron 35.0%
CGGAGGCTATTAAATTGAAA+TGG - chr1_4:55000152-55000171 None:intergenic 35.0%
ATAGCCTCCGTAAATATGAA+TGG + chr1_4:55000162-55000181 Msa0170690:intron 35.0%
CGTCCTTCCATTCATATTTA+CGG - chr1_4:55000172-55000191 None:intergenic 35.0%
TATGAGGGACTAGATTGATA+TGG + chr1_4:55000242-55000261 Msa0170690:intron 35.0%
GACTAGATTGATATGGTCAA+GGG + chr1_4:55000249-55000268 Msa0170690:intron 35.0%
AAAAATGACATACGACAGGT+AGG + chr1_4:55000312-55000331 Msa0170690:intron 35.0%
AAAATGACATACGACAGGTA+GGG + chr1_4:55000313-55000332 Msa0170690:intron 35.0%
GCAGACATCTTGAAGAAAAA+TGG + chr1_4:55000360-55000379 Msa0170690:CDS 35.0%
TTTGTGACATTGAGGAAAGA+TGG + chr1_4:55000435-55000454 Msa0170690:CDS 35.0%
TCAGTAACATATCAGCACTA+GGG - chr1_4:55000488-55000507 None:intergenic 35.0%
TTCAGTAACATATCAGCACT+AGG - chr1_4:55000489-55000508 None:intergenic 35.0%
GGAAGTCTATTAAATGATGG+AGG + chr1_4:55000775-55000794 Msa0170690:intron 35.0%
GGAGGATATAACAGAAAACT+AGG + chr1_4:55000793-55000812 Msa0170690:intron 35.0%
ATAACAGCTTCTTCATTCTC+AGG - chr1_4:55000924-55000943 None:intergenic 35.0%
AAGAAGCTGTTATGTCTCTA+TGG + chr1_4:55000931-55000950 Msa0170690:CDS 35.0%
AAGCTGCTTATTATCACTGA+TGG + chr1_4:55000966-55000985 Msa0170690:CDS 35.0%
TATTATCACTGATGGAGAGA+AGG + chr1_4:55000974-55000993 Msa0170690:CDS 35.0%
ATTATCACTGATGGAGAGAA+GGG + chr1_4:55000975-55000994 Msa0170690:CDS 35.0%
TGTTCGAAACAGTCTTACAA+GGG - chr1_4:55001235-55001254 None:intergenic 35.0%
TTGTTCGAAACAGTCTTACA+AGG - chr1_4:55001236-55001255 None:intergenic 35.0%
CAAGAGACCCTTCTATATTT+GGG + chr1_4:55001561-55001580 Msa0170690:CDS 35.0%
AAGAGACCCTTCTATATTTG+GGG + chr1_4:55001562-55001581 Msa0170690:CDS 35.0%
AGCATACCCCAAATATAGAA+GGG - chr1_4:55001571-55001590 None:intergenic 35.0%
AAGCATACCCCAAATATAGA+AGG - chr1_4:55001572-55001591 None:intergenic 35.0%
! GTATTTTTCTGTCACTAGAG+TGG - chr1_4:55001619-55001638 None:intergenic 35.0%
AATGAATATAGCTAGTCCTC+TGG - chr1_4:55001884-55001903 None:intergenic 35.0%
ATGGCATCATCATCATGTGT+AGG + chr1_4:54997982-54998001 Msa0170690:five_prime_UTR 40.0%
! CTTGGTAGCAGTCAAATGTT+TGG - chr1_4:54998028-54998047 None:intergenic 40.0%
GGCAAAGTTACACTTACCTT+GGG - chr1_4:54998051-54998070 None:intergenic 40.0%
AGGCAAAGTTACACTTACCT+TGG - chr1_4:54998052-54998071 None:intergenic 40.0%
GTGTAACTTTGCCTTCAACA+AGG + chr1_4:54998058-54998077 Msa0170690:five_prime_UTR 40.0%
ACAACTCTTCTCCTTGTTGA+AGG - chr1_4:54998072-54998091 None:intergenic 40.0%
CTAGAAGAGCAACTAGCATA+GGG - chr1_4:54998347-54998366 None:intergenic 40.0%
ACTAGAAGAGCAACTAGCAT+AGG - chr1_4:54998348-54998367 None:intergenic 40.0%
GTCCATGGAAAATTACTTGG+AGG - chr1_4:54998614-54998633 None:intergenic 40.0%
TCTGTTGCATCATATGTCCA+TGG - chr1_4:54998629-54998648 None:intergenic 40.0%
! GAGACATGCTATCTTTTGGA+AGG + chr1_4:54998647-54998666 Msa0170690:five_prime_UTR 40.0%
! CAAGTACAACTCATCCCTTT+TGG - chr1_4:54998743-54998762 None:intergenic 40.0%
CAAAAGGGATGAGTTGTACT+TGG + chr1_4:54998741-54998760 Msa0170690:five_prime_UTR 40.0%
CACACTGGTCCCATTTATTT+AGG - chr1_4:54999046-54999065 None:intergenic 40.0%
! CCTTAAATTTGGGTTCACAC+TGG - chr1_4:54999061-54999080 None:intergenic 40.0%
CCAGTGTGAACCCAAATTTA+AGG + chr1_4:54999058-54999077 Msa0170690:five_prime_UTR 40.0%
! ACCCAAATTTAAGGTACCAC+TGG + chr1_4:54999067-54999086 Msa0170690:five_prime_UTR 40.0%
TCGCCGAATGATATCACTAA+TGG - chr1_4:54999548-54999567 None:intergenic 40.0%
! GATTTTGTTCCAGACACATC+TGG + chr1_4:54999578-54999597 Msa0170690:CDS 40.0%
! GAAAGCATAAGATTCAGCCA+AGG - chr1_4:54999609-54999628 None:intergenic 40.0%
ATTAAGAACCTTGCCGATGA+AGG - chr1_4:54999699-54999718 None:intergenic 40.0%
TAAATCGCAGCTAATGCAAG+CGG - chr1_4:54999824-54999843 None:intergenic 40.0%
TTACGTATAGTCTACCAACG+GGG - chr1_4:54999865-54999884 None:intergenic 40.0%
ACCACATCAAACCATAACCT+CGG - chr1_4:54999895-54999914 None:intergenic 40.0%
CCTTCCATTCATATTTACGG+AGG - chr1_4:55000169-55000188 None:intergenic 40.0%
CCTCCGTAAATATGAATGGA+AGG + chr1_4:55000166-55000185 Msa0170690:intron 40.0%
GGACTAGATTGATATGGTCA+AGG + chr1_4:55000248-55000267 Msa0170690:intron 40.0%
AAATGACATACGACAGGTAG+GGG + chr1_4:55000314-55000333 Msa0170690:intron 40.0%
! TGGTGTTCTTTTTGACACAG+AGG + chr1_4:55000395-55000414 Msa0170690:CDS 40.0%
!!! CATTGGCTTTTGTGACATTG+AGG + chr1_4:55000427-55000446 Msa0170690:CDS 40.0%
ATTGAGGAAAGATGGAGAGA+GGG + chr1_4:55000443-55000462 Msa0170690:CDS 40.0%
ACCATGTAGATCTGCTCATA+TGG + chr1_4:55000584-55000603 Msa0170690:CDS 40.0%
TGTCCTATGATCCAAATGTC+AGG + chr1_4:55000643-55000662 Msa0170690:CDS 40.0%
AAGCCTGACATTTGGATCAT+AGG - chr1_4:55000649-55000668 None:intergenic 40.0%
!! GGTCTGGAATCAAAAGCATT+TGG + chr1_4:55000697-55000716 Msa0170690:CDS 40.0%
! GAATGAGGCTGATTTCATCA+AGG + chr1_4:55000719-55000738 Msa0170690:CDS 40.0%
GGGTTGTAGATATGTCACTA+AGG + chr1_4:55000995-55001014 Msa0170690:CDS 40.0%
AGTCTTACAAGGGCTTATGT+CGG - chr1_4:55001225-55001244 None:intergenic 40.0%
GCAAGAGACCCTTCTATATT+TGG + chr1_4:55001560-55001579 Msa0170690:CDS 40.0%
AGCAATGTGTACAACACAGA+AGG + chr1_4:55001764-55001783 Msa0170690:CDS 40.0%
GCAATGTGTACAACACAGAA+GGG + chr1_4:55001765-55001784 Msa0170690:CDS 40.0%
!! AGTTTAGTTGGCTTTAGAGC+TGG - chr1_4:55001838-55001857 None:intergenic 40.0%
AGTTACACTTACCTTGGGCT+TGG - chr1_4:54998046-54998065 None:intergenic 45.0%
AGGAGAAGAGTTGTAAGAGC+AGG + chr1_4:54998078-54998097 Msa0170690:five_prime_UTR 45.0%
! AACACCAAGTTGAGTGAGCT+TGG - chr1_4:54998151-54998170 None:intergenic 45.0%
!! AGCTCACTCAACTTGGTGTT+AGG + chr1_4:54998151-54998170 Msa0170690:five_prime_UTR 45.0%
! GCCCTCCAAGTAATTTTCCA+TGG + chr1_4:54998609-54998628 Msa0170690:five_prime_UTR 45.0%
AAAGTGAAGGTCACTCCTAG+TGG + chr1_4:54998671-54998690 Msa0170690:five_prime_UTR 45.0%
AAGTGAAGGTCACTCCTAGT+GGG + chr1_4:54998672-54998691 Msa0170690:five_prime_UTR 45.0%
GAGGCAGTTGAAATTTCTGC+TGG + chr1_4:54998701-54998720 Msa0170690:five_prime_UTR 45.0%
TGTACTTGGGATGTGTCTGT+TGG + chr1_4:54998755-54998774 Msa0170690:five_prime_UTR 45.0%
! CTAGGGGAGTGCATTTAAGA+TGG - chr1_4:54998926-54998945 None:intergenic 45.0%
! AGACCAAGCAGCGCAATTTT+TGG + chr1_4:54999196-54999215 Msa0170690:five_prime_UTR 45.0%
TCACCAAAAATTGCGCTGCT+TGG - chr1_4:54999202-54999221 None:intergenic 45.0%
!!! AGCAGCGCAATTTTTGGTGA+AGG + chr1_4:54999202-54999221 Msa0170690:five_prime_UTR 45.0%
AAGGATACACCAGATGTGTC+TGG - chr1_4:54999590-54999609 None:intergenic 45.0%
AGACACATCTGGTGTATCCT+TGG + chr1_4:54999589-54999608 Msa0170690:CDS 45.0%
TATGCTTTCATCAAAGCCCC+TGG + chr1_4:54999620-54999639 Msa0170690:CDS 45.0%
GCTTGCATTAGCTGCGATTT+AGG + chr1_4:54999823-54999842 Msa0170690:intron 45.0%
ACCGAGGTTATGGTTTGATG+TGG + chr1_4:54999891-54999910 Msa0170690:intron 45.0%
TAGGGGATGATGAGTTTGGA+AGG + chr1_4:55000331-55000350 Msa0170690:CDS 45.0%
CATTGAGGAAAGATGGAGAG+AGG + chr1_4:55000442-55000461 Msa0170690:CDS 45.0%
GCCATATGAGCAGATCTACA+TGG - chr1_4:55000588-55000607 None:intergenic 45.0%
ACCTTCTCTAGCAGCTTTCA+TGG - chr1_4:55000613-55000632 None:intergenic 45.0%
ATGAAAGCTGCTAGAGAAGG+TGG + chr1_4:55000612-55000631 Msa0170690:CDS 45.0%
CACAAAGGAAGCCTGACATT+TGG - chr1_4:55000657-55000676 None:intergenic 45.0%
CAAATGTCAGGCTTCCTTTG+TGG + chr1_4:55000655-55000674 Msa0170690:CDS 45.0%
GTGAAGGCAATTGACACAAC+TGG + chr1_4:55001497-55001516 Msa0170690:CDS 45.0%
!!! GGTGCTGGTGATTCTTTTGT+TGG + chr1_4:55001518-55001537 Msa0170690:CDS 45.0%
TTTGACTGCTACCAAGCCCA+AGG + chr1_4:54998032-54998051 Msa0170690:five_prime_UTR 50.0%
! GCAGGTGTCACAGAGAAACT+TGG + chr1_4:54998096-54998115 Msa0170690:five_prime_UTR 50.0%
AGTTGAGTGAGCTTGGACTC+AGG - chr1_4:54998144-54998163 None:intergenic 50.0%
GAGTCCAAGCTCACTCAACT+TGG + chr1_4:54998144-54998163 Msa0170690:five_prime_UTR 50.0%
!! CTCAACTTGGTGTTAGGCAG+TGG + chr1_4:54998157-54998176 Msa0170690:five_prime_UTR 50.0%
AGTGAAGGTCACTCCTAGTG+GGG + chr1_4:54998673-54998692 Msa0170690:five_prime_UTR 50.0%
TTGGGATGTGTCTGTTGGTG+TGG + chr1_4:54998760-54998779 Msa0170690:five_prime_UTR 50.0%
AATTGCGCTGCTTGGTCTCA+TGG - chr1_4:54999194-54999213 None:intergenic 50.0%
GCTTGTGCTGTGTCCAAACT+TGG + chr1_4:54999662-54999681 Msa0170690:CDS 50.0%
TGTGCTGTGTCCAAACTTGG+TGG + chr1_4:54999665-54999684 Msa0170690:CDS 50.0%
CTAATCGAGAGTTTCCCCGT+TGG + chr1_4:54999848-54999867 Msa0170690:intron 50.0%
GGTCAAGGGACCGATTAAAC+AGG + chr1_4:55000263-55000282 Msa0170690:intron 50.0%
CAGGTAGGGGATGATGAGTT+TGG + chr1_4:55000327-55000346 Msa0170690:intron 50.0%
CACAGAGGCAAGAACTGCAT+TGG + chr1_4:55000410-55000429 Msa0170690:CDS 50.0%
GCCATGAAAGCTGCTAGAGA+AGG + chr1_4:55000609-55000628 Msa0170690:CDS 50.0%
! GGTAAGTGGGTTCTCAGTGA+AGG + chr1_4:55001481-55001500 Msa0170690:CDS 50.0%
GCAATTGACACAACTGGTGC+TGG + chr1_4:55001503-55001522 Msa0170690:CDS 50.0%
TGGTGCACTTCTCAGAGATG+TGG + chr1_4:55001538-55001557 Msa0170690:CDS 50.0%
! AGCAGTTGGAAGTGCAGGAA+TGG - chr1_4:55001793-55001812 None:intergenic 50.0%
! TCTTCAGCAGTTGGAAGTGC+AGG - chr1_4:55001798-55001817 None:intergenic 50.0%
TGCACTTCCAACTGCTGAAG+AGG + chr1_4:55001797-55001816 Msa0170690:CDS 50.0%
TTCTGAGCCTCTTCAGCAGT+TGG - chr1_4:55001807-55001826 None:intergenic 50.0%
GAGTGAGCTTGGACTCAGGA+GGG - chr1_4:54998140-54998159 None:intergenic 55.0%
TGAGTGAGCTTGGACTCAGG+AGG - chr1_4:54998141-54998160 None:intergenic 55.0%
CACTCCTAGTGGGGCTAATG+AGG + chr1_4:54998682-54998701 Msa0170690:five_prime_UTR 55.0%
ACTGCCTCATTAGCCCCACT+AGG - chr1_4:54998689-54998708 None:intergenic 55.0%
GCTTTCATCAAAGCCCCTGG+CGG + chr1_4:54999623-54999642 Msa0170690:CDS 55.0%
AGCACAAGCCACATTGGCAG+GGG - chr1_4:54999651-54999670 None:intergenic 55.0%
CAGCACAAGCCACATTGGCA+GGG - chr1_4:54999652-54999671 None:intergenic 55.0%
ACAGCACAAGCCACATTGGC+AGG - chr1_4:54999653-54999672 None:intergenic 55.0%
GGACACAGCACAAGCCACAT+TGG - chr1_4:54999657-54999676 None:intergenic 55.0%
GGCAGCATTGCCACCAAGTT+TGG - chr1_4:54999678-54999697 None:intergenic 55.0%
GGTGGCAATGCTGCCTTCAT+CGG + chr1_4:54999683-54999702 Msa0170690:CDS 55.0%
CAATGCTGCCTTCATCGGCA+AGG + chr1_4:54999688-54999707 Msa0170690:CDS 55.0%
TCGCAGCTAATGCAAGCGGA+AGG - chr1_4:54999820-54999839 None:intergenic 55.0%
TCCTTTGTGGCCTTCTGCTG+AGG + chr1_4:55000668-55000687 Msa0170690:CDS 55.0%
GCCTCAGCAGAAGGCCACAA+AGG - chr1_4:55000672-55000691 None:intergenic 60.0%
GACCTAGCAGCCTCAGCAGA+AGG - chr1_4:55000681-55000700 None:intergenic 60.0%
TCTGCTGAGGCTGCTAGGTC+TGG + chr1_4:55000681-55000700 Msa0170690:CDS 60.0%
GGCCTTCTGCTGAGGCTGCT+AGG + chr1_4:55000676-55000695 Msa0170690:CDS 65.0%
!! ATTGGCAGGGGCACCGCCAG+GGG - chr1_4:54999639-54999658 None:intergenic 70.0%
!! CATTGGCAGGGGCACCGCCA+GGG - chr1_4:54999640-54999659 None:intergenic 70.0%
!! ACATTGGCAGGGGCACCGCC+AGG - chr1_4:54999641-54999660 None:intergenic 70.0%
TGGCGGTGCCCCTGCCAATG+TGG + chr1_4:54999640-54999659 Msa0170690:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 54997810 55001938 54997810 ID=Msa0170690;Name=Msa0170690
chr1_4 mRNA 54997810 55001938 54997810 ID=Msa0170690-mRNA-1;Parent=Msa0170690;Name=Msa0170690-mRNA-1;_AED=0.06;_eAED=0.06;_QI=1301|1|1|1|1|0.83|6|84|327
chr1_4 exon 54997810 54998184 54997810 ID=Msa0170690-mRNA-1:exon:16423;Parent=Msa0170690-mRNA-1
chr1_4 exon 54998601 54999709 54998601 ID=Msa0170690-mRNA-1:exon:16424;Parent=Msa0170690-mRNA-1
chr1_4 exon 55000330 55000740 55000330 ID=Msa0170690-mRNA-1:exon:16425;Parent=Msa0170690-mRNA-1
chr1_4 exon 55000882 55001016 55000882 ID=Msa0170690-mRNA-1:exon:16426;Parent=Msa0170690-mRNA-1
chr1_4 exon 55001467 55001583 55001467 ID=Msa0170690-mRNA-1:exon:16427;Parent=Msa0170690-mRNA-1
chr1_4 exon 55001717 55001938 55001717 ID=Msa0170690-mRNA-1:exon:16428;Parent=Msa0170690-mRNA-1
chr1_4 five_prime_UTR 54997810 54998184 54997810 ID=Msa0170690-mRNA-1:five_prime_utr;Parent=Msa0170690-mRNA-1
chr1_4 five_prime_UTR 54998601 54999526 54998601 ID=Msa0170690-mRNA-1:five_prime_utr;Parent=Msa0170690-mRNA-1
chr1_4 CDS 54999527 54999709 54999527 ID=Msa0170690-mRNA-1:cds;Parent=Msa0170690-mRNA-1
chr1_4 CDS 55000330 55000740 55000330 ID=Msa0170690-mRNA-1:cds;Parent=Msa0170690-mRNA-1
chr1_4 CDS 55000882 55001016 55000882 ID=Msa0170690-mRNA-1:cds;Parent=Msa0170690-mRNA-1
chr1_4 CDS 55001467 55001583 55001467 ID=Msa0170690-mRNA-1:cds;Parent=Msa0170690-mRNA-1
chr1_4 CDS 55001717 55001854 55001717 ID=Msa0170690-mRNA-1:cds;Parent=Msa0170690-mRNA-1
chr1_4 three_prime_UTR 55001855 55001938 55001855 ID=Msa0170690-mRNA-1:three_prime_utr;Parent=Msa0170690-mRNA-1
Gene Sequence

>Msa0170690

ATGTCAGGCTCAAAAGATCCATTAGTGATATCATTCGGCGAGATGCTCATAGATTTTGTTCCAGACACATCTGGTGTATCCTTGGCTGAATCTTATGCTTTCATCAAAGCCCCTGGCGGTGCCCCTGCCAATGTGGCTTGTGCTGTGTCCAAACTTGGTGGCAATGCTGCCTTCATCGGCAAGGTAGGGGATGATGAGTTTGGAAGGATGCTAGCAGACATCTTGAAGAAAAATGGAGTGAATACAGATGGTGTTCTTTTTGACACAGAGGCAAGAACTGCATTGGCTTTTGTGACATTGAGGAAAGATGGAGAGAGGGAGTTCATGTTTTATAGAAACCCTAGTGCTGATATGTTACTGAAAGAATCTGAATTGAACATGGATATGATTAAGAATACAAAGATATTCCATTATGGATCCATTAGTCTTATTTCAGAACCATGTAGATCTGCTCATATGGCTGCCATGAAAGCTGCTAGAGAAGGTGGTGCTTTGTTGTCCTATGATCCAAATGTCAGGCTTCCTTTGTGGCCTTCTGCTGAGGCTGCTAGGTCTGGAATCAAAAGCATTTGGAATGAGGCTGATTTCATCAAGGTAAGTGATGATGAAGTTCAATTTCTTACACAAAAAGATCCTGAGAATGAAGAAGCTGTTATGTCTCTATGGCATGACAAGTTGAAGCTGCTTATTATCACTGATGGAGAGAAGGGTTGTAGATATGTCACTAAGAATTTTAAAGGAAGGGTAAGTGGGTTCTCAGTGAAGGCAATTGACACAACTGGTGCTGGTGATTCTTTTGTTGGTGCACTTCTCAGAGATGTGGCAAGAGACCCTTCTATATTTGGGGATGAACCAAAATTGAGAGAGACTTTAACATTTGCAAATGCTTGTGGAGCAATGTGTACAACACAGAAGGGAGCCATTCCTGCACTTCCAACTGCTGAAGAGGCTCAGAAATTTATTTCCAGCTCTAAAGCCAACTAA
Protein sequence

>Msa0170690

MSGSKDPLVISFGEMLIDFVPDTSGVSLAESYAFIKAPGGAPANVACAVSKLGGNAAFIGKVGDDEFGRMLADILKKNGVNTDGVLFDTEARTALAFVTLRKDGEREFMFYRNPSADMLLKESELNMDMIKNTKIFHYGSISLISEPCRSAHMAAMKAAREGGALLSYDPNVRLPLWPSAEAARSGIKSIWNEADFIKVSDDEVQFLTQKDPENEEAVMSLWHDKLKLLIITDGEKGCRYVTKNFKGRVSGFSVKAIDTTGAGDSFVGALLRDVARDPSIFGDEPKLRETLTFANACGAMCTTQKGAIPALPTAEEAQKFISSSKAN*