AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0362440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0362440 MtrunA17_Chr3g0101471 93.798 1306 81 0 1 1306 1 1306 0.0 2532
Msa0362440 MtrunA17_Chr3g0101441 89.908 1308 130 1 1 1306 1 1308 0.0 2410
Msa0362440 MtrunA17_Chr3g0101461 89.373 1308 137 1 1 1306 1 1308 0.0 2395
Msa0362440 MtrunA17_Chr5g0445741 67.945 1304 400 4 7 1304 204 1495 0.0 1856
Msa0362440 MtrunA17_Chr5g0412721 66.872 1298 422 4 7 1302 197 1488 0.0 1824
Msa0362440 MtrunA17_Chr3g0101481 65.438 1302 440 3 5 1304 206 1499 0.0 1794
Msa0362440 MtrunA17_Chr5g0445671 70.236 1102 317 3 192 1292 1 1092 0.0 1622
Msa0362440 MtrunA17_Chr1g0183191 52.767 1283 586 4 35 1301 247 1525 0.0 1371
Msa0362440 MtrunA17_Chr7g0262191 51.794 1282 602 3 35 1301 245 1525 0.0 1350
Msa0362440 MtrunA17_Chr8g0337121 51.236 1294 606 7 21 1302 221 1501 0.0 1335
Msa0362440 MtrunA17_Chr8g0337191 51.161 1292 610 8 21 1302 201 1481 0.0 1321
Msa0362440 MtrunA17_Chr8g0376961 47.545 1283 626 13 32 1301 191 1439 0.0 1207
Msa0362440 MtrunA17_Chr3g0085281 45.517 1305 647 15 28 1301 191 1462 0.0 1150
Msa0362440 MtrunA17_Chr6g0463131 44.088 1277 662 12 35 1296 226 1465 0.0 1072
Msa0362440 MtrunA17_Chr2g0295911 42.172 1271 712 8 35 1301 250 1501 0.0 1063
Msa0362440 MtrunA17_Chr8g0341751 42.947 1269 701 9 35 1296 27 1279 0.0 1063
Msa0362440 MtrunA17_Chr6g0463121 43.218 1305 697 9 3 1296 193 1464 0.0 1052
Msa0362440 MtrunA17_Chr2g0295901 42.068 1267 716 6 35 1301 250 1498 0.0 1043
Msa0362440 MtrunA17_Chr8g0341761 42.494 1299 711 12 14 1302 177 1449 0.0 1042
Msa0362440 MtrunA17_Chr6g0463151 42.770 1307 696 13 5 1303 27 1289 0.0 1040
Msa0362440 MtrunA17_Chr6g0463201 42.756 1270 690 11 35 1296 229 1469 0.0 1038
Msa0362440 MtrunA17_Chr6g0463181 42.667 1275 682 12 31 1296 214 1448 0.0 1037
Msa0362440 MtrunA17_Chr8g0353781 43.014 1274 696 9 30 1296 196 1446 0.0 1034
Msa0362440 MtrunA17_Chr6g0463141 41.834 1298 701 9 35 1303 224 1496 0.0 1033
Msa0362440 MtrunA17_Chr1g0195691 41.628 1302 724 13 8 1301 240 1513 0.0 1033
Msa0362440 MtrunA17_Chr8g0363771 41.608 1269 724 6 35 1301 245 1498 0.0 1032
Msa0362440 MtrunA17_Chr2g0295921 41.765 1269 720 7 35 1301 262 1513 0.0 1026
Msa0362440 MtrunA17_Chr6g0472531 43.116 1271 683 10 35 1296 176 1415 0.0 1026
Msa0362440 MtrunA17_Chr6g0463211 42.550 1302 679 15 35 1296 263 1535 0.0 1020
Msa0362440 MtrunA17_Chr6g0471281 42.969 1273 682 11 35 1296 226 1465 0.0 1011
Msa0362440 MtrunA17_Chr8g0341811 41.609 1293 688 14 13 1296 33 1267 0.0 990
Msa0362440 MtrunA17_Chr8g0341851 40.767 1278 709 11 38 1296 208 1456 0.0 974
Msa0362440 MtrunA17_Chr5g0412921 58.495 824 324 5 7 828 191 998 0.0 974
Msa0362440 MtrunA17_Chr8g0353541 43.675 1083 593 6 224 1301 1 1071 0.0 931
Msa0362440 MtrunA17_Chr3g0080941 34.331 1270 785 15 40 1293 232 1468 0.0 729
Msa0362440 MtrunA17_Chr3g0080981 33.908 1277 780 18 40 1293 232 1467 0.0 725
Msa0362440 MtrunA17_Chr2g0285731 34.107 1293 814 10 21 1298 213 1482 0.0 724
Msa0362440 MtrunA17_Chr8g0359291 43.852 675 346 8 626 1296 1 646 0.0 553
Msa0362440 MtrunA17_Chr2g0333911 34.799 1046 606 21 284 1293 1 1006 9.61e-180 558
Msa0362440 MtrunA17_Chr6g0463391 43.091 673 357 7 626 1296 1 649 1.06e-179 546
Msa0362440 MtrunA17_Chr6g0484351 43.155 672 356 7 626 1296 1 647 2.10e-178 543
Msa0362440 MtrunA17_Chr6g0484351 27.039 233 140 6 443 654 424 647 2.28e-13 74.7
Msa0362440 MtrunA17_Chr1g0202221 38.582 832 463 15 7 830 204 995 1.64e-175 558
Msa0362440 MtrunA17_Chr1g0202221 46.076 497 233 3 803 1296 907 1371 3.67e-141 465
Msa0362440 MtrunA17_Chr1g0202221 26.904 197 130 2 1077 1272 637 820 3.71e-12 71.6
Msa0362440 MtrunA17_Chr5g0412941 79.677 310 62 1 996 1304 20 329 1.07e-173 518
Msa0362440 MtrunA17_Chr5g0412941 23.936 188 129 2 459 633 113 299 1.03e-11 67.8
Msa0362440 MtrunA17_Chr6g0484361 43.456 596 331 6 35 625 206 800 4.90e-147 466
Msa0362440 MtrunA17_Chr6g0463401 41.297 586 332 3 35 614 233 812 1.52e-143 456
Msa0362440 MtrunA17_Chr8g0341801 46.636 431 226 2 874 1301 1 430 1.59e-132 414
Msa0362440 MtrunA17_Chr8g0341801 25.439 228 140 5 448 654 204 422 1.48e-11 68.2
Msa0362440 MtrunA17_Chr5g0445701 78.049 246 48 1 1065 1304 1 246 8.84e-132 404
Msa0362440 MtrunA17_Chr5g0445701 25.397 189 127 3 448 623 13 200 8.95e-11 63.9
Msa0362440 MtrunA17_Chr8g0341791 42.655 354 191 4 489 841 10 352 1.09e-88 292
Msa0362440 MtrunA17_Chr8g0341781 34.864 479 302 3 14 485 15 490 8.90e-82 277
Msa0362440 MtrunA17_Chr5g0412931 64.407 177 63 0 818 994 1 177 6.16e-77 251
Msa0362440 MtrunA17_Chr8g0349441 50.481 208 99 1 387 594 2 205 4.04e-61 208
Msa0362440 MtrunA17_Chr7g0233901 22.781 935 608 26 417 1282 333 1222 8.26e-54 206
Msa0362440 MtrunA17_Chr7g0233901 32.400 250 164 4 1057 1302 354 602 1.99e-36 150
Msa0362440 MtrunA17_Chr7g0233901 27.586 232 150 5 430 644 995 1225 3.76e-20 97.4
Msa0362440 MtrunA17_Chr6g0481921 24.388 939 603 26 430 1300 271 1170 3.80e-53 204
Msa0362440 MtrunA17_Chr6g0481921 30.544 239 162 3 1058 1293 269 506 1.09e-33 141
Msa0362440 MtrunA17_Chr7g0264631 23.094 918 617 23 430 1289 426 1312 6.70e-53 204
Msa0362440 MtrunA17_Chr7g0264631 28.750 240 166 4 1058 1293 424 662 1.79e-26 118
Msa0362440 MtrunA17_Chr7g0264631 28.571 252 157 5 411 646 1066 1310 4.41e-22 103
Msa0362440 MtrunA17_Chr2g0285301 23.471 1014 673 29 348 1294 281 1258 2.79e-52 201
Msa0362440 MtrunA17_Chr2g0285311 23.992 942 603 25 430 1300 369 1268 1.25e-51 199
Msa0362440 MtrunA17_Chr2g0285311 24.605 569 383 14 759 1300 70 619 2.38e-37 153
Msa0362440 MtrunA17_Chr2g0285191 24.301 930 614 27 430 1300 398 1296 4.86e-51 197
Msa0362440 MtrunA17_Chr2g0285191 24.558 509 348 12 804 1293 142 633 3.05e-36 150
Msa0362440 MtrunA17_Chr2g0285191 28.794 257 157 6 425 657 1041 1295 7.56e-17 86.7
Msa0362440 MtrunA17_Chr8g0344651 23.703 983 657 34 355 1282 522 1466 1.10e-50 197
Msa0362440 MtrunA17_Chr5g0445691 49.451 182 87 1 7 183 206 387 4.05e-50 182
Msa0362440 MtrunA17_Chr8g0371961 68.000 125 22 1 1065 1189 7 113 8.94e-50 172
Msa0362440 MtrunA17_Chr6g0453051 23.228 917 615 26 430 1293 363 1243 1.25e-46 183
Msa0362440 MtrunA17_Chr6g0453051 23.670 545 363 17 775 1293 80 597 2.91e-29 127
Msa0362440 MtrunA17_Chr6g0453051 32.530 249 142 9 411 642 994 1233 2.93e-23 107
Msa0362440 MtrunA17_Chr4g0061601 26.168 535 365 15 764 1283 94 613 1.87e-37 150
Msa0362440 MtrunA17_Chr4g0061601 26.250 320 220 3 348 652 305 623 5.74e-28 121
Msa0362440 MtrunA17_Chr3g0119381 23.077 546 369 14 775 1294 115 635 4.18e-36 149
Msa0362440 MtrunA17_Chr3g0119381 30.833 240 160 4 1058 1293 1055 1292 2.52e-26 117
Msa0362440 MtrunA17_Chr3g0119381 28.829 222 139 4 430 635 399 617 1.78e-19 95.5
Msa0362440 MtrunA17_Chr3g0119381 28.125 256 161 4 422 655 1042 1296 7.04e-19 93.6
Msa0362440 MtrunA17_Chr1g0194031 23.077 533 364 12 785 1293 109 619 1.41e-35 147
Msa0362440 MtrunA17_Chr1g0194031 28.947 228 143 5 430 641 384 608 3.99e-20 97.1
Msa0362440 MtrunA17_Chr4g0069361 24.314 547 358 14 775 1293 95 613 7.68e-35 145
Msa0362440 MtrunA17_Chr4g0069361 23.194 526 351 14 805 1302 780 1280 5.60e-29 126
Msa0362440 MtrunA17_Chr4g0069361 31.034 261 157 5 422 660 1021 1280 1.95e-23 108
Msa0362440 MtrunA17_Chr4g0069361 28.862 246 147 5 409 640 370 601 9.34e-19 93.2
Msa0362440 MtrunA17_Chr4g0069351 24.214 541 366 15 775 1293 95 613 1.88e-34 144
Msa0362440 MtrunA17_Chr4g0069351 23.935 493 326 13 835 1302 812 1280 4.56e-30 129
Msa0362440 MtrunA17_Chr4g0069351 33.493 209 123 3 461 654 1067 1274 1.54e-21 102
Msa0362440 MtrunA17_Chr4g0069351 29.675 246 145 5 409 640 370 601 3.31e-20 97.8
Msa0362440 MtrunA17_Chr3g0123411 31.330 233 156 3 1058 1287 903 1134 5.51e-34 142
Msa0362440 MtrunA17_Chr3g0123411 28.526 312 188 11 355 641 828 1129 8.04e-22 102
Msa0362440 MtrunA17_Chr3g0123411 30.568 229 155 3 1058 1283 247 474 1.76e-21 101
Msa0362440 MtrunA17_Chr3g0123411 33.333 228 133 5 430 641 249 473 2.35e-18 91.7
Msa0362440 MtrunA17_Chr1g0193991 22.202 545 370 14 776 1293 107 624 5.20e-33 139
Msa0362440 MtrunA17_Chr1g0193991 27.869 244 171 3 1058 1297 1042 1284 1.77e-26 118
Msa0362440 MtrunA17_Chr1g0193991 29.386 228 142 5 430 641 389 613 4.49e-21 100
Msa0362440 MtrunA17_Chr1g0193991 28.761 226 144 4 448 657 1062 1286 1.42e-16 85.9
Msa0362440 MtrunA17_Chr3g0138211 28.740 254 175 4 1058 1306 394 646 7.44e-33 139
Msa0362440 MtrunA17_Chr3g0138211 28.137 263 169 6 1058 1303 1024 1283 1.89e-24 111
Msa0362440 MtrunA17_Chr3g0138211 33.846 195 110 5 462 640 428 619 1.45e-20 99.0
Msa0362440 MtrunA17_Chr3g0138211 31.100 209 128 3 461 654 1069 1276 2.80e-17 88.2
Msa0362440 MtrunA17_Chr4g0069401 23.801 563 371 14 769 1301 82 616 1.34e-31 134
Msa0362440 MtrunA17_Chr4g0069401 22.686 551 367 17 783 1302 756 1278 3.45e-27 120
Msa0362440 MtrunA17_Chr4g0069401 31.034 261 157 4 422 660 1019 1278 9.67e-23 105
Msa0362440 MtrunA17_Chr4g0069401 29.885 261 149 7 409 655 365 605 1.61e-19 95.5
Msa0362440 MtrunA17_Chr4g0069411 25.227 551 361 17 784 1305 117 645 2.01e-31 134
Msa0362440 MtrunA17_Chr4g0069411 28.112 249 173 4 1058 1302 1048 1294 2.70e-28 124
Msa0362440 MtrunA17_Chr4g0069411 31.878 229 138 4 448 660 1068 1294 2.49e-21 101
Msa0362440 MtrunA17_Chr4g0069411 25.753 299 183 6 360 640 342 619 3.30e-20 97.8
Msa0362440 MtrunA17_Chr1g0178481 30.909 220 149 1 1058 1274 378 597 3.39e-31 131
Msa0362440 MtrunA17_Chr1g0178481 24.625 333 217 9 338 644 291 615 6.40e-18 89.4
Msa0362440 MtrunA17_Chr4g0039821 24.125 543 364 17 775 1293 93 611 2.21e-30 130
Msa0362440 MtrunA17_Chr4g0039821 24.494 494 322 14 835 1302 810 1278 9.48e-29 125
Msa0362440 MtrunA17_Chr4g0039821 31.579 228 140 3 448 660 1052 1278 7.92e-22 103
Msa0362440 MtrunA17_Chr4g0039821 23.875 511 341 16 154 635 103 594 6.94e-19 93.6
Msa0362440 MtrunA17_Chr1g0156821 29.583 240 165 3 1058 1294 992 1230 3.08e-30 130
Msa0362440 MtrunA17_Chr1g0156821 31.304 230 142 5 437 651 1001 1229 2.60e-21 101
Msa0362440 MtrunA17_Chr1g0156821 27.273 209 151 1 1075 1282 388 596 1.89e-19 95.1
Msa0362440 MtrunA17_Chr1g0156821 32.278 158 97 4 498 650 453 605 4.60e-15 80.9
Msa0362440 MtrunA17_Chr6g0452111 24.359 546 366 17 781 1302 91 613 5.25e-30 129
Msa0362440 MtrunA17_Chr6g0452111 24.289 457 280 13 877 1298 836 1261 7.45e-29 125
Msa0362440 MtrunA17_Chr6g0452111 28.455 246 152 5 412 641 355 592 1.11e-20 99.4
Msa0362440 MtrunA17_Chr6g0452111 26.562 256 162 5 430 669 1018 1263 7.45e-20 96.7
Msa0362440 MtrunA17_Chr6g0452041 24.037 545 362 16 775 1293 78 596 5.82e-30 129
Msa0362440 MtrunA17_Chr6g0452041 25.056 443 295 12 877 1299 837 1262 5.01e-28 123
Msa0362440 MtrunA17_Chr6g0452041 21.559 603 393 19 112 667 693 1262 4.10e-21 100
Msa0362440 MtrunA17_Chr6g0452041 27.935 247 154 5 411 641 347 585 4.01e-20 97.4
Msa0362440 MtrunA17_Chr3g0128381 24.506 506 339 13 805 1283 134 623 6.06e-30 127
Msa0362440 MtrunA17_Chr3g0128381 29.020 255 146 7 411 641 379 622 2.24e-19 94.4
Msa0362440 MtrunA17_Chr6g0451881 29.880 251 171 4 1057 1303 358 607 1.05e-29 128
Msa0362440 MtrunA17_Chr6g0451881 26.599 297 199 6 1012 1299 964 1250 2.18e-28 124
Msa0362440 MtrunA17_Chr5g0410921 28.033 239 168 3 1058 1293 987 1224 2.95e-29 127
Msa0362440 MtrunA17_Chr5g0410921 23.652 575 394 17 738 1293 43 591 3.84e-29 126
Msa0362440 MtrunA17_Chr5g0410921 27.628 333 193 9 342 641 896 1213 1.89e-25 114
Msa0362440 MtrunA17_Chr5g0410921 26.611 357 231 8 427 762 353 699 7.58e-22 103
Msa0362440 MtrunA17_Chr6g0451911 22.920 589 405 19 729 1293 33 596 3.35e-29 127
Msa0362440 MtrunA17_Chr6g0451911 25.000 440 299 12 877 1299 832 1257 2.81e-28 124
Msa0362440 MtrunA17_Chr6g0451911 23.077 442 289 12 256 667 837 1257 5.02e-21 100
Msa0362440 MtrunA17_Chr6g0451911 26.692 266 171 5 392 641 328 585 1.75e-20 98.6
Msa0362440 MtrunA17_Chr6g0452071 25.282 443 293 13 877 1299 32 456 3.53e-29 122
Msa0362440 MtrunA17_Chr6g0452071 27.200 250 160 5 411 644 199 442 1.89e-20 96.3
Msa0362440 MtrunA17_Chr6g0452171 30.400 250 169 4 1057 1302 358 606 7.27e-29 125
Msa0362440 MtrunA17_Chr6g0452171 24.099 444 304 12 877 1302 838 1266 1.17e-28 125
Msa0362440 MtrunA17_Chr6g0452171 27.273 275 169 6 411 669 1006 1265 2.64e-21 101
Msa0362440 MtrunA17_Chr6g0452171 27.068 266 170 5 392 641 328 585 8.88e-21 99.8
Msa0362440 MtrunA17_Chr5g0433051 30.932 236 160 3 1058 1292 464 697 7.67e-29 124
Msa0362440 MtrunA17_Chr5g0433051 26.621 293 186 7 380 652 416 699 1.22e-17 89.0
Msa0362440 MtrunA17_Chr6g0452141 23.909 573 384 19 749 1293 49 597 7.71e-29 125
Msa0362440 MtrunA17_Chr6g0452141 24.490 441 300 12 877 1299 835 1260 1.22e-28 125
Msa0362440 MtrunA17_Chr6g0452141 30.455 220 134 4 437 640 369 585 5.51e-21 100
Msa0362440 MtrunA17_Chr6g0452141 26.562 256 162 6 430 669 1017 1262 4.65e-19 94.0
Msa0362440 MtrunA17_Chr6g0452061 25.587 426 280 13 877 1282 347 755 2.44e-28 123
Msa0362440 MtrunA17_Chr6g0452061 27.706 231 150 6 430 644 529 758 6.72e-20 96.3
Msa0362440 MtrunA17_Chr6g0452061 35.088 114 73 1 1190 1302 14 127 1.86e-13 75.5
Msa0362440 MtrunA17_Chr1g0180601 28.261 230 161 3 1058 1284 1053 1281 3.30e-28 124
Msa0362440 MtrunA17_Chr1g0180601 28.571 245 159 3 1051 1293 405 635 2.83e-26 117
Msa0362440 MtrunA17_Chr1g0180601 27.778 306 193 7 392 674 358 658 1.15e-22 105
Msa0362440 MtrunA17_Chr1g0180601 29.762 252 154 5 411 646 1040 1284 3.99e-22 103
Msa0362440 MtrunA17_Chr4g0041871 22.898 559 380 13 752 1283 34 568 3.60e-28 123
Msa0362440 MtrunA17_Chr4g0041871 29.386 228 157 3 1058 1282 1004 1230 1.24e-27 122
Msa0362440 MtrunA17_Chr4g0041871 25.532 329 210 10 343 646 917 1235 2.35e-20 98.2
Msa0362440 MtrunA17_Chr4g0041871 30.702 228 139 5 430 641 343 567 1.28e-19 95.9
Msa0362440 MtrunA17_Chr6g0474071 30.472 233 156 3 1058 1285 211 442 2.97e-27 117
Msa0362440 MtrunA17_Chr6g0474071 29.796 245 153 4 425 653 210 451 7.78e-21 97.4
Msa0362440 MtrunA17_Chr1g0194001 29.130 230 156 4 1058 1282 145 372 1.17e-26 113
Msa0362440 MtrunA17_Chr1g0194001 29.187 209 132 3 448 641 165 372 6.90e-18 87.4
Msa0362440 MtrunA17_Chr6g0452081 30.918 207 139 3 1057 1262 24 227 1.32e-26 109
Msa0362440 MtrunA17_Chr6g0452081 32.768 177 100 4 461 621 54 227 9.00e-18 84.0
Msa0362440 MtrunA17_Chr6g0486841 25.664 226 166 2 1058 1281 1000 1225 1.19e-24 112
Msa0362440 MtrunA17_Chr6g0486841 22.898 559 378 18 769 1300 69 601 1.83e-23 108
Msa0362440 MtrunA17_Chr6g0486841 28.571 308 181 7 348 640 942 1225 4.79e-21 100
Msa0362440 MtrunA17_Chr6g0486841 28.302 318 185 10 355 643 282 585 1.69e-19 95.5
Msa0362440 MtrunA17_Chr5g0433071 30.085 236 162 3 1058 1292 466 699 1.98e-24 110
Msa0362440 MtrunA17_Chr5g0433071 26.316 228 153 3 448 661 484 710 6.00e-16 83.2
Msa0362440 MtrunA17_Chr5g0412741 24.188 554 350 19 779 1301 183 697 3.16e-24 109
Msa0362440 MtrunA17_Chr5g0412741 25.879 313 210 5 348 641 374 683 3.58e-19 93.6
Msa0362440 MtrunA17_Chr7g0227391 23.859 482 343 12 814 1282 181 651 8.37e-24 108
Msa0362440 MtrunA17_Chr7g0227391 29.707 239 147 5 430 650 425 660 1.36e-22 104
Msa0362440 MtrunA17_Chr7g0222781 29.565 230 157 4 1057 1282 1152 1380 2.72e-21 101
Msa0362440 MtrunA17_Chr7g0222781 26.754 228 161 2 1071 1298 419 640 1.79e-19 95.5
Msa0362440 MtrunA17_Chr7g0222781 28.216 241 157 5 429 654 1154 1393 1.23e-16 86.3
Msa0362440 MtrunA17_Chr7g0222781 27.039 233 152 4 461 676 437 668 1.34e-14 79.3
Msa0362440 MtrunA17_Chr8g0366481 25.000 240 176 3 1058 1294 384 622 3.04e-21 100
Msa0362440 MtrunA17_Chr8g0366481 34.194 155 94 4 498 647 467 618 1.61e-16 85.1
Msa0362440 MtrunA17_Chr8g0393151 31.776 214 129 5 1076 1281 35 239 3.88e-21 94.7
Msa0362440 MtrunA17_Chr8g0393151 29.952 207 114 9 448 633 36 232 5.13e-12 67.8
Msa0362440 MtrunA17_Chr1g0212701 27.715 267 181 6 1013 1274 1105 1364 1.02e-20 99.4
Msa0362440 MtrunA17_Chr1g0212701 24.342 304 200 6 1004 1298 352 634 6.08e-20 97.1
Msa0362440 MtrunA17_Chr1g0212701 26.667 300 200 7 370 654 1091 1385 2.52e-17 88.2
Msa0362440 MtrunA17_Chr1g0212701 29.187 209 134 3 461 656 431 638 1.65e-14 79.3
Msa0362440 MtrunA17_Chr8g0366471 33.019 106 70 1 538 643 9 113 1.13e-15 75.5
Msa0362440 MtrunA17_Chr8g0366471 29.808 104 73 0 1190 1293 19 122 1.37e-11 63.9
Msa0362440 MtrunA17_Chr2g0333921 24.719 267 186 4 2 267 207 459 2.60e-14 77.0
Msa0362440 MtrunA17_Chr3g0128391 38.298 94 57 1 548 641 447 539 3.92e-14 77.0
Msa0362440 MtrunA17_Chr3g0128391 34.021 97 64 0 1186 1282 443 539 1.01e-11 69.3
Msa0362440 MtrunA17_Chr8g0391641 31.618 136 89 1 35 170 100 231 6.34e-14 73.2
Msa0362440 MtrunA17_Chr8g0353561 32.895 152 93 3 35 181 25 172 1.79e-13 70.9
Msa0362440 MtrunA17_Chr4g0014991 37.864 103 63 1 293 394 17 119 7.45e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0362440 AT3G13080.1 65.796 1301 441 4 7 1304 214 1513 0.0 1782
Msa0362440 AT3G13080.5 65.696 1271 432 4 7 1274 214 1483 0.0 1734
Msa0362440 AT3G13080.2 63.874 1301 441 5 7 1304 214 1488 0.0 1714
Msa0362440 AT3G13100.1 62.122 1291 475 2 14 1304 209 1485 0.0 1648
Msa0362440 AT3G13100.2 62.839 1254 452 2 51 1304 1 1240 0.0 1624
Msa0362440 AT3G13090.1 61.034 1296 482 4 7 1302 189 1461 0.0 1622
Msa0362440 AT1G04120.1 52.599 1289 582 7 35 1301 228 1509 0.0 1363
Msa0362440 AT1G04120.2 52.289 1289 581 8 35 1301 228 1504 0.0 1350
Msa0362440 AT1G04120.3 51.513 1289 561 9 35 1301 228 1474 0.0 1315
Msa0362440 AT3G60160.1 50.423 1301 628 8 9 1306 215 1501 0.0 1314
Msa0362440 AT3G60160.3 50.423 1301 628 8 9 1306 179 1465 0.0 1313
Msa0362440 AT3G60970.1 51.787 1091 482 4 217 1306 1 1048 0.0 1159
Msa0362440 AT3G60160.2 48.843 1167 580 8 9 1172 215 1367 0.0 1134
Msa0362440 AT3G13080.3 61.702 893 338 4 7 896 214 1105 0.0 1131
Msa0362440 AT3G13080.4 61.702 893 338 4 7 896 214 1105 0.0 1131
Msa0362440 AT3G59140.1 42.857 1295 704 9 8 1296 179 1443 0.0 1048
Msa0362440 AT3G62700.1 41.501 1306 719 11 30 1301 243 1537 0.0 1026
Msa0362440 AT2G47800.1 40.846 1300 749 11 11 1301 226 1514 0.0 1002
Msa0362440 AT3G21250.2 43.570 1283 685 14 27 1296 194 1450 0.0 1001
Msa0362440 AT3G21250.2 24.405 336 211 8 353 657 1130 1453 3.18e-14 78.6
Msa0362440 AT3G21250.4 43.570 1283 685 14 27 1296 200 1456 0.0 1000
Msa0362440 AT3G21250.4 24.405 336 211 8 353 657 1136 1459 2.85e-14 79.0
Msa0362440 AT3G21250.1 43.024 1283 681 15 27 1296 194 1439 0.0 979
Msa0362440 AT3G21250.1 24.551 334 213 8 353 657 1119 1442 3.23e-14 78.6
Msa0362440 AT3G21250.5 43.024 1283 681 15 27 1296 200 1445 0.0 978
Msa0362440 AT3G21250.5 24.405 336 211 8 353 657 1125 1448 3.49e-14 78.6
Msa0362440 AT3G21250.6 46.010 1015 525 8 287 1296 38 1034 0.0 875
Msa0362440 AT3G21250.6 24.551 334 213 8 353 657 714 1037 3.85e-14 78.2
Msa0362440 AT3G21250.3 46.010 1015 525 8 287 1296 38 1034 0.0 875
Msa0362440 AT3G21250.3 24.551 334 213 8 353 657 714 1037 3.85e-14 78.2
Msa0362440 AT2G34660.1 34.748 1272 804 9 39 1298 230 1487 0.0 759
Msa0362440 AT2G34660.2 34.748 1272 804 9 39 1298 230 1487 0.0 759
Msa0362440 AT1G30400.2 34.612 1277 794 10 39 1298 230 1482 0.0 737
Msa0362440 AT1G30400.1 34.612 1277 794 10 39 1298 230 1482 0.0 737
Msa0362440 AT2G34660.3 35.137 1201 757 8 110 1298 10 1200 0.0 734
Msa0362440 AT1G30420.1 33.571 1263 804 13 40 1293 232 1468 0.0 708
Msa0362440 AT1G30410.5 33.465 1267 802 14 39 1293 116 1353 0.0 702
Msa0362440 AT1G30410.2 33.465 1267 802 14 39 1293 231 1468 0.0 702
Msa0362440 AT1G30410.6 33.465 1267 802 14 39 1293 231 1468 0.0 702
Msa0362440 AT1G30410.4 33.465 1267 802 14 39 1293 231 1468 0.0 702
Msa0362440 AT1G30410.1 33.386 1270 802 15 39 1293 231 1471 0.0 697
Msa0362440 AT2G07680.6 32.067 1316 805 22 3 1293 72 1323 0.0 664
Msa0362440 AT2G07680.3 32.143 1316 804 22 3 1293 171 1422 0.0 663
Msa0362440 AT2G07680.5 31.839 1316 789 22 3 1293 174 1406 0.0 649
Msa0362440 AT2G07680.4 31.763 1316 784 22 3 1293 171 1397 0.0 647
Msa0362440 AT2G07680.1 31.763 1316 784 22 3 1293 174 1400 0.0 647
Msa0362440 AT1G30410.3 31.615 1164 755 14 39 1190 231 1365 0.0 599
Msa0362440 AT1G30410.3 23.280 189 132 2 1087 1274 643 819 3.93e-12 71.6
Msa0362440 AT2G07680.2 29.440 1053 663 19 3 1033 171 1165 2.83e-135 445
Msa0362440 AT2G07680.2 24.312 218 150 2 1075 1290 599 803 6.20e-13 74.3
Msa0362440 AT1G30420.2 30.864 891 586 13 11 896 206 1071 7.15e-125 414
Msa0362440 AT1G30420.2 24.286 210 144 3 1087 1295 643 838 5.68e-14 77.8
Msa0362440 AT1G71330.1 60.383 313 119 2 519 829 1 310 3.78e-124 387
Msa0362440 AT5G46540.1 24.658 949 599 32 412 1294 344 1242 1.82e-53 206
Msa0362440 AT5G46540.1 29.644 253 159 6 421 657 998 1247 4.41e-19 94.4
Msa0362440 AT3G28380.1 24.339 945 585 27 409 1283 338 1222 1.98e-53 206
Msa0362440 AT3G28380.1 28.188 298 203 6 1001 1294 305 595 7.43e-28 123
Msa0362440 AT3G28380.1 22.689 595 383 18 112 655 669 1237 5.79e-22 103
Msa0362440 AT1G02520.1 22.854 967 597 30 412 1293 368 1270 9.86e-53 203
Msa0362440 AT1G02520.1 29.268 246 155 5 430 657 1032 1276 1.22e-19 96.3
Msa0362440 AT1G02520.2 22.854 967 597 30 412 1293 368 1270 9.86e-53 203
Msa0362440 AT1G02520.2 29.268 246 155 5 430 657 1032 1276 1.22e-19 96.3
Msa0362440 AT1G02520.3 22.854 967 597 30 412 1293 368 1270 9.86e-53 203
Msa0362440 AT1G02520.3 29.268 246 155 5 430 657 1032 1276 1.22e-19 96.3
Msa0362440 AT2G47000.6 23.077 936 607 27 430 1293 384 1278 1.10e-52 203
Msa0362440 AT2G47000.6 30.962 239 161 3 1058 1293 382 619 1.73e-34 144
Msa0362440 AT2G47000.5 23.077 936 607 27 430 1293 384 1278 1.10e-52 203
Msa0362440 AT2G47000.5 30.962 239 161 3 1058 1293 382 619 1.73e-34 144
Msa0362440 AT2G47000.1 23.077 936 607 27 430 1293 384 1278 1.10e-52 203
Msa0362440 AT2G47000.1 30.962 239 161 3 1058 1293 382 619 1.73e-34 144
Msa0362440 AT3G28390.1 23.402 923 607 22 411 1282 333 1206 1.01e-51 200
Msa0362440 AT3G28390.1 29.707 239 164 3 1058 1293 345 582 1.88e-27 121
Msa0362440 AT3G28390.1 28.761 226 142 6 448 655 998 1222 3.79e-19 94.7
Msa0362440 AT1G10680.1 23.789 950 593 31 413 1299 342 1223 3.16e-51 198
Msa0362440 AT1G10680.1 21.329 572 407 15 738 1293 52 596 3.03e-26 117
Msa0362440 AT1G10680.1 29.020 255 156 6 404 638 954 1203 6.43e-22 103
Msa0362440 AT3G28415.1 23.966 943 569 32 422 1282 326 1202 3.27e-49 192
Msa0362440 AT3G28415.1 27.000 300 206 7 999 1293 282 573 1.39e-27 122
Msa0362440 AT3G28415.1 22.867 586 369 20 112 644 650 1205 2.10e-21 102
Msa0362440 AT3G28415.2 23.966 943 569 32 422 1282 334 1210 3.49e-49 192
Msa0362440 AT3G28415.2 27.000 300 206 7 999 1293 290 581 1.34e-27 122
Msa0362440 AT3G28415.2 22.867 586 369 20 112 644 658 1213 2.20e-21 102
Msa0362440 AT3G28360.1 23.924 953 612 29 401 1294 322 1220 7.11e-48 187
Msa0362440 AT1G10680.2 23.536 888 548 31 413 1237 342 1161 2.35e-41 166
Msa0362440 AT1G10680.2 21.329 572 407 15 738 1293 52 596 1.84e-26 118
Msa0362440 AT1G10680.2 30.583 206 119 5 404 589 954 1155 9.58e-15 80.5
Msa0362440 AT2G47000.2 22.613 796 505 26 430 1155 384 1138 2.26e-35 147
Msa0362440 AT2G47000.2 30.962 239 161 3 1058 1293 382 619 1.23e-34 145
Msa0362440 AT2G47000.4 30.962 239 161 3 1058 1293 382 619 8.39e-35 145
Msa0362440 AT2G47000.4 22.832 565 365 18 430 945 384 926 1.54e-24 112
Msa0362440 AT2G47000.3 30.962 239 161 3 1058 1293 382 619 8.73e-35 145
Msa0362440 AT2G47000.3 22.832 565 365 18 430 945 384 926 1.73e-24 112
Msa0362440 AT2G47000.7 30.962 239 161 3 1058 1293 382 619 8.73e-35 145
Msa0362440 AT2G47000.7 22.832 565 365 18 430 945 384 926 1.73e-24 112
Msa0362440 AT4G18050.2 31.799 239 159 3 1058 1293 363 600 1.76e-34 144
Msa0362440 AT4G18050.2 30.417 240 162 3 1058 1293 1001 1239 1.72e-29 128
Msa0362440 AT4G18050.2 29.918 244 151 6 412 641 352 589 1.26e-21 102
Msa0362440 AT4G18050.2 28.916 249 158 5 425 657 1000 1245 2.82e-18 92.0
Msa0362440 AT4G18050.1 31.513 238 161 2 1058 1293 353 590 1.87e-34 144
Msa0362440 AT4G18050.1 30.417 240 162 3 1058 1293 991 1229 1.74e-29 128
Msa0362440 AT4G18050.1 29.918 244 151 6 412 641 342 579 1.20e-21 102
Msa0362440 AT4G18050.1 28.916 249 158 5 425 657 990 1235 2.91e-18 91.7
Msa0362440 AT5G39040.1 24.606 508 351 13 791 1282 130 621 1.35e-33 139
Msa0362440 AT5G39040.1 28.736 261 170 3 419 664 385 644 6.11e-27 118
Msa0362440 AT3G62150.3 24.088 548 370 15 769 1293 114 638 4.67e-33 140
Msa0362440 AT3G62150.3 28.333 240 167 3 1058 1293 1050 1288 1.49e-27 122
Msa0362440 AT3G62150.2 24.088 548 370 15 769 1293 114 638 4.67e-33 140
Msa0362440 AT3G62150.2 28.333 240 167 3 1058 1293 1050 1288 1.49e-27 122
Msa0362440 AT3G62150.1 24.088 548 370 15 769 1293 114 638 4.67e-33 140
Msa0362440 AT3G62150.1 28.333 240 167 3 1058 1293 1050 1288 1.49e-27 122
Msa0362440 AT1G02530.2 23.729 531 379 11 776 1293 86 603 3.64e-32 136
Msa0362440 AT1G02530.2 30.531 226 142 4 430 641 368 592 7.77e-19 93.6
Msa0362440 AT1G02530.1 23.729 531 379 11 776 1293 86 603 8.24e-32 135
Msa0362440 AT1G02530.1 29.339 242 164 3 1058 1293 1025 1265 7.82e-30 129
Msa0362440 AT1G02530.1 29.268 246 155 5 430 657 1027 1271 5.58e-20 97.4
Msa0362440 AT1G02530.1 30.531 226 142 4 430 641 368 592 7.04e-19 94.0
Msa0362440 AT5G58270.1 27.688 372 248 7 930 1292 351 710 1.03e-31 134
Msa0362440 AT5G58270.1 28.780 205 129 4 461 650 508 710 1.50e-18 92.0
Msa0362440 AT4G01820.2 23.596 534 376 11 776 1293 66 583 1.73e-30 131
Msa0362440 AT4G01820.2 31.148 244 148 6 412 641 335 572 1.27e-21 102
Msa0362440 AT4G25960.1 22.530 577 398 16 738 1293 88 636 1.84e-30 131
Msa0362440 AT4G25960.1 27.500 240 170 3 1058 1294 1028 1266 2.21e-27 121
Msa0362440 AT4G25960.1 22.873 529 335 15 156 643 131 627 2.63e-23 108
Msa0362440 AT4G25960.1 27.897 233 149 4 425 641 1025 1254 1.54e-18 92.8
Msa0362440 AT4G01820.1 23.562 539 370 12 776 1293 66 583 2.53e-30 131
Msa0362440 AT4G01820.1 27.586 232 159 2 1076 1301 1001 1229 1.50e-23 108
Msa0362440 AT4G01820.1 31.148 244 148 6 412 641 335 572 1.84e-21 102
Msa0362440 AT4G01820.1 28.745 247 158 4 430 659 984 1229 4.92e-17 87.8
Msa0362440 AT4G01830.2 28.870 239 166 3 1058 1293 117 354 7.68e-30 129
Msa0362440 AT4G01830.2 29.864 221 152 1 1076 1293 768 988 2.47e-28 124
Msa0362440 AT4G01830.2 30.328 244 150 6 412 641 106 343 7.95e-22 103
Msa0362440 AT4G01830.2 28.512 242 155 4 430 654 751 991 6.60e-20 97.1
Msa0362440 AT4G01830.1 28.870 239 166 3 1058 1293 351 588 7.99e-30 129
Msa0362440 AT4G01830.1 29.864 221 152 1 1076 1293 1002 1222 2.62e-28 124
Msa0362440 AT4G01830.1 30.328 244 150 6 412 641 340 577 8.30e-22 103
Msa0362440 AT4G01830.1 28.512 242 155 4 430 654 985 1225 8.11e-20 97.1
Msa0362440 AT4G25450.3 25.875 514 318 11 829 1287 27 532 1.14e-29 126
Msa0362440 AT4G25450.3 28.216 241 156 3 434 658 305 544 1.94e-18 91.3
Msa0362440 AT1G27940.2 30.088 226 157 1 1058 1282 156 381 1.40e-29 128
Msa0362440 AT1G27940.2 27.843 255 178 4 1045 1294 773 1026 2.54e-27 121
Msa0362440 AT1G27940.2 31.624 234 141 4 430 647 790 1020 7.62e-24 109
Msa0362440 AT1G27940.2 28.214 280 179 8 390 651 116 391 1.59e-23 108
Msa0362440 AT4G28620.1 30.830 253 168 4 1045 1292 420 670 1.76e-29 127
Msa0362440 AT4G28620.1 28.425 292 181 8 380 650 386 670 7.28e-19 93.2
Msa0362440 AT1G27940.1 30.088 226 157 1 1058 1282 370 595 1.77e-29 128
Msa0362440 AT1G27940.1 27.843 255 178 4 1045 1294 987 1240 3.22e-27 120
Msa0362440 AT1G27940.1 31.356 236 143 4 430 649 1004 1236 1.42e-23 109
Msa0362440 AT1G27940.1 28.214 280 179 8 390 651 330 605 2.80e-23 108
Msa0362440 AT3G28345.1 28.731 268 185 4 1029 1293 330 594 4.49e-29 127
Msa0362440 AT3G28345.1 24.066 482 309 14 831 1282 767 1221 1.36e-24 112
Msa0362440 AT3G28345.1 27.941 272 169 6 411 668 345 603 1.48e-21 102
Msa0362440 AT3G28345.1 26.407 231 153 3 430 644 995 1224 3.47e-19 94.7
Msa0362440 AT4G25450.1 25.875 514 318 11 829 1287 196 701 6.50e-29 125
Msa0362440 AT4G25450.1 28.216 241 156 3 434 658 474 713 1.74e-18 92.0
Msa0362440 AT1G28010.1 30.088 226 157 1 1058 1282 371 596 9.53e-29 125
Msa0362440 AT1G28010.1 28.571 280 178 7 390 651 331 606 2.79e-24 111
Msa0362440 AT4G28630.1 30.894 246 164 4 1058 1302 435 675 1.29e-28 124
Msa0362440 AT4G28630.1 26.712 292 186 8 380 650 384 668 6.14e-17 87.0
Msa0362440 AT3G28860.1 23.704 540 369 15 775 1293 82 599 1.39e-28 125
Msa0362440 AT3G28860.1 25.714 245 178 3 1058 1299 1008 1251 8.88e-25 113
Msa0362440 AT3G28860.1 29.310 232 143 5 427 642 1009 1235 1.28e-20 99.4
Msa0362440 AT3G28860.1 30.041 243 149 5 430 652 365 606 6.90e-20 97.1
Msa0362440 AT5G03910.1 32.197 264 173 3 1027 1287 366 626 3.24e-28 122
Msa0362440 AT5G03910.1 24.672 458 299 16 207 633 171 613 2.15e-18 91.3
Msa0362440 AT2G36910.1 27.419 248 176 3 1058 1302 1022 1268 7.51e-27 119
Msa0362440 AT2G36910.1 28.163 245 160 3 1051 1293 374 604 1.05e-25 116
Msa0362440 AT2G36910.1 27.715 267 172 5 430 676 368 633 4.80e-23 107
Msa0362440 AT2G36910.1 29.365 252 155 5 411 646 1009 1253 9.87e-21 99.8
Msa0362440 AT1G70610.2 23.551 552 332 20 791 1301 13 515 4.43e-23 105
Msa0362440 AT1G70610.2 29.310 232 142 5 430 642 274 502 8.31e-18 89.0
Msa0362440 AT1G70610.1 23.211 573 350 20 770 1301 173 696 1.40e-22 105
Msa0362440 AT1G70610.1 29.310 232 142 5 430 642 455 683 1.02e-17 89.4
Msa0362440 AT1G67940.1 29.870 231 143 7 1059 1281 28 247 1.26e-20 93.6
Msa0362440 AT3G55320.1 20.762 525 373 12 779 1283 137 638 1.17e-19 96.7
Msa0362440 AT3G55320.1 25.839 298 201 7 1013 1305 1117 1399 1.93e-19 95.9
Msa0362440 AT3G55320.1 25.316 316 216 7 358 654 1083 1397 5.90e-17 87.8
Msa0362440 AT3G55320.1 27.273 209 138 3 461 656 445 652 1.59e-13 76.3
Msa0362440 AT2G39480.2 27.731 238 166 5 1042 1274 959 1195 1.96e-19 95.5
Msa0362440 AT2G39480.2 25.417 240 171 3 1058 1295 230 463 3.23e-19 95.1
Msa0362440 AT2G39480.2 26.198 313 211 7 361 654 905 1216 1.34e-16 86.3
Msa0362440 AT2G39480.2 28.230 209 136 3 461 656 263 470 1.38e-14 79.7
Msa0362440 AT2G39480.1 27.731 238 166 5 1042 1274 1139 1375 1.96e-19 95.9
Msa0362440 AT2G39480.1 25.417 240 171 3 1058 1295 410 643 2.92e-19 95.1
Msa0362440 AT2G39480.1 25.879 313 212 7 361 654 1085 1396 1.06e-16 86.7
Msa0362440 AT2G39480.1 28.230 209 136 3 461 656 443 650 1.46e-14 79.7
Msa0362440 AT5G39040.2 23.136 389 269 12 791 1163 130 504 1.06e-15 82.4
Msa0362440 AT4G25450.2 24.018 433 262 12 829 1204 196 618 1.20e-12 72.8
Msa0362440 AT4G39850.3 29.577 213 135 6 1060 1267 448 650 6.46e-12 71.2
Msa0362440 AT4G39850.1 29.577 213 135 6 1060 1267 448 650 7.95e-12 70.9
Msa0362440 AT4G39850.4 29.577 213 135 6 1060 1267 448 650 7.95e-12 70.9
Msa0362440 AT4G39850.2 29.577 213 135 6 1060 1267 448 650 8.23e-12 70.9

Find 280 sgRNAs with CRISPR-Local

Find 421 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTGTTCTGCAAGTTTCTT+TGG 0.175151 3_1:+53637857 Msa0362440:CDS
CACAGGATCCCATCTCTTTA+AGG 0.178315 3_1:+53638913 Msa0362440:CDS
TTTCGTGATCAGACCATTAT+TGG 0.190138 3_1:+53638773 Msa0362440:CDS
AGTTTAATTTCTTGTATAAT+TGG 0.228646 3_1:+53638566 Msa0362440:CDS
TACAGATTGCAAGCAATTAT+TGG 0.234708 3_1:+53640006 Msa0362440:CDS
ACACTAGCAGTGTATAATTT+AGG 0.239649 3_1:-53641262 None:intergenic
TATTGGAAGCCTTACTCTTA+TGG 0.240657 3_1:+53640070 Msa0362440:CDS
TATGGTTGTCTACCTTTCTT+TGG 0.241728 3_1:+53640088 Msa0362440:CDS
GAAGTTTCAAGGTAAGTTAA+TGG 0.244273 3_1:+53637983 Msa0362440:CDS
AGTTAGATTGTACAGCATTT+AGG 0.247391 3_1:-53641505 None:intergenic
AATTTCGTATCTTTGCAATT+TGG 0.254670 3_1:+53641529 Msa0362440:CDS
GTGTATAAATTTAAGAATAA+TGG 0.258263 3_1:+53643229 Msa0362440:three_prime_UTR
AAATCCAGCATTTGAATAAC+TGG 0.260782 3_1:-53637253 None:intergenic
AAATGTATTCCTTCTCTCTA+AGG 0.266887 3_1:-53639733 None:intergenic
GGTGAAATACCGAAGATATC+TGG 0.277003 3_1:+53638587 Msa0362440:CDS
TTCAGAAACTCTTCCCATAT+TGG 0.286585 3_1:-53643422 None:intergenic
TGGCAAAGAATTCTTATATC+TGG 0.287241 3_1:+53637483 Msa0362440:CDS
ATAGAGGATAATATACTATT+TGG 0.294600 3_1:+53638674 Msa0362440:CDS
CTGAGGGATTATGCTTAGTT+TGG 0.296025 3_1:-53642229 None:intergenic
TCTTGAACAAGTTGTCCTTT+TGG 0.301001 3_1:-53639867 None:intergenic
CATTCCTTTCCAGGTATTGC+AGG 0.313608 3_1:+53641458 Msa0362440:intron
GAGTTGAGTTTAAAGTGTTC+TGG 0.315175 3_1:+53639910 Msa0362440:CDS
TATCAAAGGTTATTCATCTT+AGG 0.315237 3_1:+53638093 Msa0362440:CDS
TACAGTATTGTTCAGCTCTT+AGG 0.318199 3_1:+53640691 Msa0362440:CDS
AGGAGGTCAAGCACTGGTTT+TGG 0.323359 3_1:+53643147 Msa0362440:CDS
GCAATCATTGAAATTGTATC+TGG 0.324832 3_1:-53638311 None:intergenic
ATTTGGCGAGGTTCGTATTC+AGG 0.328279 3_1:+53641655 Msa0362440:CDS
ACCACGACAATCGTGGATTA+TGG 0.328427 3_1:-53643387 None:intergenic
AGTACACAGATGACAAGATT+TGG 0.335509 3_1:+53642304 Msa0362440:CDS
ATTGAACAAGATTCTCTATA+AGG 0.336143 3_1:-53637551 None:intergenic
TCTTCGCTTAGATGATTTGC+AGG 0.341308 3_1:+53638370 Msa0362440:CDS
TTTGCTGCTGGAGCGAAAAC+TGG 0.351364 3_1:+53642075 Msa0362440:CDS
CGCTATCTTCACCATTCAAA+AGG 0.353103 3_1:-53637179 None:intergenic
AAACCAAGGTTTCTCTAGTT+AGG 0.356842 3_1:+53638336 Msa0362440:CDS
GTAAATCCCCATGCGACATT+TGG 0.359689 3_1:-53640667 None:intergenic
ATTAATATTTGTCCTGCAAC+AGG 0.360282 3_1:-53642162 None:intergenic
TTGTCCTTAAGCAACTTCTT+TGG 0.366799 3_1:-53643087 None:intergenic
AGACTTGTTGAACCTGTTGC+AGG 0.370243 3_1:+53642150 Msa0362440:CDS
ACAGCCAGCCAGATCATTCT+TGG 0.371200 3_1:+53641627 Msa0362440:CDS
TTTATTGCTGTGGTAACTTT+CGG 0.373493 3_1:+53638194 Msa0362440:CDS
GATTCCCTTCTCTCCAATAA+TGG 0.373727 3_1:-53638786 None:intergenic
GGTTCGTATTCAGGATTTAC+AGG 0.374322 3_1:+53641664 Msa0362440:CDS
TGTTTGCTGAATAATATTAT+CGG 0.376713 3_1:-53642870 None:intergenic
TACATTATTTGCCTTCTACT+TGG 0.376768 3_1:+53641324 Msa0362440:CDS
CTAAGCATCCCACTTGAATC+AGG 0.377531 3_1:+53638230 Msa0362440:CDS
AGTTCCATTGGCACTGTCAT+TGG 0.378909 3_1:-53637367 None:intergenic
ATTTGTGAAAGAAATATAAT+AGG 0.384486 3_1:-53639969 None:intergenic
TATTCATCTTAGGAAGTTAG+AGG 0.387604 3_1:+53638103 Msa0362440:CDS
TTACTGAGAATGGAGAAAAT+TGG 0.387665 3_1:+53642747 Msa0362440:CDS
GATTCCGCGGTTGCTGAAAC+AGG 0.393766 3_1:-53640044 None:intergenic
ATAGCAATTGAAATAGTAGA+TGG 0.394115 3_1:+53638431 Msa0362440:CDS
AGTTCCAACAGGTTGGTGTC+AGG 0.400254 3_1:+53637679 Msa0362440:CDS
ACTTAAGAAAAGCAAGATCT+TGG 0.401678 3_1:+53642811 Msa0362440:CDS
ACTGGCATTGTGGGAAGAAC+AGG 0.404713 3_1:+53642093 Msa0362440:CDS
GATCATTCTTGGCCATCATT+TGG 0.407554 3_1:+53641638 Msa0362440:CDS
GCAGTTCTTGTTGTAATAGC+TGG 0.410123 3_1:+53640143 Msa0362440:CDS
GAAAACATAAACGATCAAAA+AGG 0.412457 3_1:+53639822 Msa0362440:CDS
GGTCTCTTTCTTTGTTATGT+TGG 0.412967 3_1:+53637111 Msa0362440:intron
TGCTCTAGCAAAGGTGGTAC+AGG 0.413267 3_1:-53640123 None:intergenic
TGATTGCCTAAAGCTATTAG+TGG 0.413313 3_1:-53637306 None:intergenic
AACATCAACATCTCATTGAT+TGG 0.413473 3_1:+53642189 Msa0362440:CDS
CTGTTTCAGGAGTGTTTGCT+TGG 0.414203 3_1:+53639421 Msa0362440:intron
AAATACATCACAACAGGTTA+TGG 0.414336 3_1:+53639933 Msa0362440:CDS
GCAGGGTTGGCTGTGACATA+TGG 0.417621 3_1:+53641476 Msa0362440:CDS
AAGCAATTATTGGATGGCTT+TGG 0.418159 3_1:+53640016 Msa0362440:CDS
ATTATACTACTGCACTGTTC+TGG 0.421063 3_1:-53643338 None:intergenic
CTAGGATCAGCAATTGAACT+TGG 0.421154 3_1:-53641364 None:intergenic
ATGTGGCTAAAGAAATTTCT+TGG 0.422221 3_1:+53638128 Msa0362440:CDS
GCAACCGCGGAATCTGATAT+TGG 0.422309 3_1:+53640053 Msa0362440:CDS
TTCACCAAAGAAGTTGCTTA+AGG 0.423028 3_1:+53643083 Msa0362440:CDS
TTCATTTAGGTCATGAAAGA+AGG 0.424131 3_1:+53639609 Msa0362440:intron
TACCAAGAAAACCAAGTAGA+AGG 0.424506 3_1:-53641335 None:intergenic
CTTTCCAGGTATTGCAGGGT+TGG 0.424512 3_1:+53641463 Msa0362440:intron
AACAGAAATTGCCTGTCAAT+TGG 0.424595 3_1:+53643293 Msa0362440:three_prime_UTR
GAAGGAAGAATAACACAATC+AGG 0.426636 3_1:+53639627 Msa0362440:CDS
GTCTACCTTTCTTTGGCAGT+TGG 0.430617 3_1:+53640095 Msa0362440:CDS
TCTGGGAACTTGAAGGTTTG+TGG 0.432086 3_1:+53638605 Msa0362440:CDS
TCAAGATGAAGAACGAGAAA+AGG 0.434201 3_1:+53639884 Msa0362440:CDS
ATTCCACATGTGGTAGGAAA+TGG 0.439321 3_1:-53636733 None:intergenic
CTCTTTCGATTGACACGAAA+GGG 0.441416 3_1:-53637745 None:intergenic
CTGGATGTTTAAGTTCCAAC+AGG 0.443958 3_1:+53637668 Msa0362440:CDS
TCAACCAGTTATTCAAATGC+TGG 0.444489 3_1:+53637249 Msa0362440:CDS
TGTATGAGGGTTGCTGTTTG+TGG 0.445615 3_1:+53638521 Msa0362440:CDS
GCCTACAAGTTCCATAAAAT+CGG 0.448346 3_1:-53639679 None:intergenic
CTGTCATGGCAGCTGCCATA+TGG 0.451211 3_1:+53640767 Msa0362440:CDS
GTACACAGATGACAAGATTT+GGG 0.453370 3_1:+53642305 Msa0362440:CDS
GGAATGGCTTAGTTTCAGAT+TGG 0.453433 3_1:+53641288 Msa0362440:CDS
TGATTGGAATTCATGATTTG+CGG 0.455721 3_1:+53642205 Msa0362440:CDS
AGGTGCTTCACTTGGGATAG+AGG 0.459195 3_1:-53641591 None:intergenic
GAAGATATCTGGGAACTTGA+AGG 0.463096 3_1:+53638598 Msa0362440:CDS
TTTATTCTTCATAGAAGTGT+AGG 0.463920 3_1:+53637885 Msa0362440:CDS
AGTTGGAGTGTGGTAATGTT+AGG 0.464230 3_1:+53637415 Msa0362440:CDS
TTCTGGAAATACATCACAAC+AGG 0.465523 3_1:+53639927 Msa0362440:CDS
GTTTGTGGTACGGTTGGATC+AGG 0.467072 3_1:+53638536 Msa0362440:CDS
GTGAGCATCAACAGCACTAA+AGG 0.469275 3_1:-53638891 None:intergenic
GTTCTGGCAGTTACTGAGAA+TGG 0.469518 3_1:+53642737 Msa0362440:intron
CTTCTCTTGCAGTGATGCCA+TGG 0.469909 3_1:-53637964 None:intergenic
ATTACAAGAGGTGCTTCACT+TGG 0.479334 3_1:-53641599 None:intergenic
TCAGCATTCTTACATTCTCA+TGG 0.479724 3_1:+53637277 Msa0362440:CDS
CTATTAAGAATTCTTCCACT+TGG 0.482713 3_1:-53640245 None:intergenic
TACAATGACATTCTTACGTC+AGG 0.482839 3_1:+53639654 Msa0362440:CDS
TTCAAAAGGGATTCTTCAAG+AGG 0.483007 3_1:-53637165 None:intergenic
TACTCATATCTATTGCACTT+TGG 0.483865 3_1:-53640642 None:intergenic
AGTGCCTTTCGCAGAAGCAC+TGG 0.489999 3_1:+53637649 Msa0362440:CDS
AACTGGTGCTTGGCATATAC+CGG 0.490568 3_1:-53641131 None:intergenic
CAAAGACAGTTGGTCTGCCT+CGG 0.490697 3_1:+53642779 Msa0362440:CDS
ATAATGGTCTGATCACGAAA+TGG 0.491696 3_1:-53638770 None:intergenic
TTCAAGTTCCCAGATATCTT+CGG 0.492942 3_1:-53638596 None:intergenic
ATGACTCCACTAATAGCTTT+AGG 0.493811 3_1:+53637300 Msa0362440:CDS
GTGAAATACCGAAGATATCT+GGG 0.494648 3_1:+53638588 Msa0362440:CDS
GTTGCTGTTTGTGGTACGGT+TGG 0.496264 3_1:+53638530 Msa0362440:CDS
AAAACAATACCTTAAAGAGA+TGG 0.498569 3_1:-53638922 None:intergenic
CAGGGTTGGCTGTGACATAT+GGG 0.498701 3_1:+53641477 Msa0362440:CDS
GAAGGAAAGCTTGACTCGGC+GGG 0.499293 3_1:+53642456 Msa0362440:CDS
TGTACTCTTCGAGCGGGTCG+AGG 0.501383 3_1:-53642287 None:intergenic
GAAGATATATATCAGCATCT+TGG 0.502369 3_1:-53638859 None:intergenic
AAACTCTTCCCATATTGGAT+TGG 0.503104 3_1:-53643417 None:intergenic
CAGGATCCAACGATGTTTGA+AGG 0.503920 3_1:+53642249 Msa0362440:CDS
TTATTCTTCATAGAAGTGTA+GGG 0.504550 3_1:+53637886 Msa0362440:CDS
GGTAGACAACCATAAGAGTA+AGG 0.505389 3_1:-53640079 None:intergenic
CAGACCATTATTGGAGAGAA+GGG 0.507610 3_1:+53638782 Msa0362440:CDS
AACAGGTTATGGAGGAGCTC+TGG 0.507722 3_1:+53639944 Msa0362440:CDS
CAGTTAAGTCCTTAGAGAGA+AGG 0.507987 3_1:+53639724 Msa0362440:CDS
TATTTGGTAGAGAGATGGAT+AGG 0.508435 3_1:+53638690 Msa0362440:CDS
CGTGAGTTATCACGATTAAC+CGG 0.511281 3_1:+53641112 Msa0362440:CDS
CTTGAAGGTTTGTGGAACAA+AGG 0.513664 3_1:+53638613 Msa0362440:CDS
CATATGGCAGCTGCCATGAC+AGG 0.514060 3_1:-53640766 None:intergenic
CAAGATGAAGAACGAGAAAA+GGG 0.515342 3_1:+53639885 Msa0362440:CDS
GGAGTTGAAGTTCTTATCAA+AGG 0.516181 3_1:+53638079 Msa0362440:CDS
GCTATCTTCACCATTCAAAA+GGG 0.516490 3_1:-53637178 None:intergenic
GATACAGAGTGGCAAGATAG+AGG 0.520411 3_1:+53638658 Msa0362440:CDS
ATTCCTTTCCAGGTATTGCA+GGG 0.520569 3_1:+53641459 Msa0362440:intron
TGAGCATCAACAGCACTAAA+GGG 0.521639 3_1:-53638890 None:intergenic
AATGGAGAAAATTGGAGCAT+GGG 0.524373 3_1:+53642755 Msa0362440:CDS
GTTCCAACAGGTTGGTGTCA+GGG 0.525068 3_1:+53637680 Msa0362440:CDS
ATACGAACCTCGCCAAATGA+TGG 0.527189 3_1:-53641650 None:intergenic
GATTGCAAGCAATTATTGGA+TGG 0.527924 3_1:+53640010 Msa0362440:CDS
GATTCCTACAGGGCTTATTG+AGG 0.528681 3_1:+53643053 Msa0362440:intron
ACAAGTATCAGATCAGCATC+AGG 0.529284 3_1:-53639496 None:intergenic
GAGGGTTGCTGTTTGTGGTA+CGG 0.530060 3_1:+53638526 Msa0362440:CDS
GTGTCAATGATATATGCTAA+AGG 0.530224 3_1:+53637717 Msa0362440:CDS
CTTGCAGTGATGCCATGGGA+TGG 0.531029 3_1:-53637959 None:intergenic
GACGACACAGTTGAGCCAAA+AGG 0.531896 3_1:+53639852 Msa0362440:CDS
TGATAAAACTGTGTCTTCCC+CGG 0.532871 3_1:-53639772 None:intergenic
AAACAATACCTTAAAGAGAT+GGG 0.532980 3_1:-53638921 None:intergenic
GGAGCGAAAACTGGCATTGT+GGG 0.534122 3_1:+53642084 Msa0362440:CDS
GATGAAGTGAGGAAGAAAGA+AGG 0.534842 3_1:+53642438 Msa0362440:CDS
TGCTCCGACGTTTATTGCTG+TGG 0.535285 3_1:+53638184 Msa0362440:CDS
TCAGACCATTATTGGAGAGA+AGG 0.542038 3_1:+53638781 Msa0362440:CDS
TTCAATGATTGCACAAACCA+AGG 0.542119 3_1:+53638322 Msa0362440:CDS
ATTCAAAGATAAAAGAATGA+AGG 0.543072 3_1:+53638007 Msa0362440:CDS
ACAGTCCCTTCAAACATCGT+TGG 0.543559 3_1:-53642255 None:intergenic
GCTATAAGAGTCCAATTGAC+AGG 0.544580 3_1:-53643304 None:intergenic
TAGCAATTGAAATAGTAGAT+GGG 0.544882 3_1:+53638432 Msa0362440:CDS
TATACTATTTGGTAGAGAGA+TGG 0.545889 3_1:+53638685 Msa0362440:CDS
TGCACCTAGTGGTTGTGTCA+TGG 0.546174 3_1:+53636767 Msa0362440:five_prime_UTR
GAGTATTCCAAATGTCGCAT+GGG 0.546261 3_1:+53640660 Msa0362440:CDS
AAATTCCAACTGCCAAAGAA+AGG 0.546449 3_1:-53640100 None:intergenic
GGAGAGTACCTGGTACCATA+TGG 0.546838 3_1:-53640782 None:intergenic
AACAAGATTCTCTATAAGGT+AGG 0.548469 3_1:-53637547 None:intergenic
AATCCTAACTAGAGAAACCT+TGG 0.553229 3_1:-53638339 None:intergenic
ACATCCAGTGCTTCTGCGAA+AGG 0.553686 3_1:-53637653 None:intergenic
GATAGTATTGATTCCTGTCA+TGG 0.553751 3_1:+53640753 Msa0362440:CDS
AATGATGGCCAAGAATGATC+TGG 0.554020 3_1:-53641635 None:intergenic
TACACATGTGCTTCTTATGT+AGG 0.554741 3_1:+53637522 Msa0362440:CDS
GATTCTTAAACTTCAAGCAT+GGG 0.555073 3_1:+53638058 Msa0362440:CDS
TCAAACATCGTTGGATCCTG+AGG 0.555940 3_1:-53642246 None:intergenic
GGATTCTTAAACTTCAAGCA+TGG 0.556453 3_1:+53638057 Msa0362440:CDS
GCACCCTGACACCAACCTGT+TGG 0.560434 3_1:-53637683 None:intergenic
TAGTAGATGGGAATTTCACT+TGG 0.560529 3_1:+53638444 Msa0362440:CDS
CAAACTAAGCATAATCCCTC+AGG 0.564325 3_1:+53642230 Msa0362440:CDS
TGAGTATTCCAAATGTCGCA+TGG 0.565301 3_1:+53640659 Msa0362440:CDS
TCACTGCAAGAGAAGTTTCA+AGG 0.569005 3_1:+53637972 Msa0362440:CDS
TCTACCAATGACAGTGCCAA+TGG 0.570240 3_1:+53637363 Msa0362440:CDS
GAGCATGGGGCAAAGACAGT+TGG 0.571915 3_1:+53642769 Msa0362440:CDS
ATTTGGTAGAGAGATGGATA+GGG 0.572704 3_1:+53638691 Msa0362440:CDS
CAACATCACAACTACGGTAG+CGG 0.576130 3_1:-53637931 None:intergenic
GCGTAAAACAAGAGGCAAGT+GGG 0.578299 3_1:-53642037 None:intergenic
TAATGACTGTTGATGCTGAA+AGG 0.580911 3_1:+53637796 Msa0362440:CDS
GAATGGAGAAAATTGGAGCA+TGG 0.581056 3_1:+53642754 Msa0362440:CDS
GGCAGCTGCCATATGGTACC+AGG 0.582328 3_1:+53640774 Msa0362440:CDS
GACCTTGGCAAGGTTAATTG+TGG 0.582544 3_1:-53637445 None:intergenic
CCTTTCGTGTCAATCGAAAG+AGG 0.582672 3_1:+53637746 Msa0362440:CDS
TGATTTGCAGGCCAATGTAG+TGG 0.583504 3_1:+53638382 Msa0362440:CDS
ATTATACACTGCTAGTGTAG+TGG 0.584733 3_1:+53641267 Msa0362440:CDS
AAGATCTTTCCTGATTCAAG+TGG 0.585420 3_1:-53638239 None:intergenic
TTCTCTTGCAGTGATGCCAT+GGG 0.585769 3_1:-53637963 None:intergenic
AACTAGTTGCAGAGTACACA+AGG 0.587378 3_1:+53643127 Msa0362440:CDS
GGATAGGGATAAGTATGAGA+AGG 0.587845 3_1:+53638706 Msa0362440:CDS
ATCTTGCCACTCTGTATCCA+CGG 0.588392 3_1:-53638653 None:intergenic
ATGTTTAAGTTCCAACAGGT+TGG 0.590791 3_1:+53637672 Msa0362440:CDS
ATGGCCAAGAATGATCTGGC+TGG 0.590932 3_1:-53641631 None:intergenic
GTATCTGGAAGATTATAGAC+AGG 0.591641 3_1:-53638296 None:intergenic
ACAAGATTCTCTATAAGGTA+GGG 0.591790 3_1:-53637546 None:intergenic
TGGCAGCTTCTCCACTACAT+TGG 0.592912 3_1:-53638393 None:intergenic
ACAAAACCATGTCGCTGTCG+AGG 0.593094 3_1:-53642952 None:intergenic
GCTCTAGATATGTGTCAACT+TGG 0.594125 3_1:+53642414 Msa0362440:CDS
GTGAGTCTGCGTAAAACAAG+AGG 0.594182 3_1:-53642045 None:intergenic
AAGAATTCTTCCACTTGGCG+TGG 0.594235 3_1:-53640240 None:intergenic
TTACAAGAGGTGCTTCACTT+GGG 0.595489 3_1:-53641598 None:intergenic
TCAAAAGGGATTCTTCAAGA+GGG 0.596999 3_1:-53637164 None:intergenic
AAGTCTGAATGTTGCAAGAG+CGG 0.597443 3_1:-53638264 None:intergenic
AGGTCTTGTTCTTCTCGACA+TGG 0.597733 3_1:+53637463 Msa0362440:CDS
ACCATAATCCACGATTGTCG+TGG 0.598044 3_1:+53643386 Msa0362440:three_prime_UTR
AATGTTGTATAACTGGTGCT+TGG 0.598439 3_1:-53641141 None:intergenic
CTGTCATTGGTAGAAAGCAA+TGG 0.600257 3_1:-53637354 None:intergenic
TTAGGAAGTTAGAGGAGATG+TGG 0.601042 3_1:+53638111 Msa0362440:CDS
ACTTGCAGAACAGCCATCCA+TGG 0.601882 3_1:-53637849 None:intergenic
TTCAATCCTCGACAGCGACA+TGG 0.603725 3_1:+53642946 Msa0362440:CDS
AGGATCCAACGATGTTTGAA+GGG 0.603988 3_1:+53642250 Msa0362440:CDS
CAACCATTTCCTACCACATG+TGG 0.604650 3_1:+53636730 Msa0362440:five_prime_UTR
TATTCTTCATAGAAGTGTAG+GGG 0.604938 3_1:+53637887 Msa0362440:CDS
TAGGATCAGCAATTGAACTT+GGG 0.605590 3_1:-53641363 None:intergenic
TCATCTGTGTACTCTTCGAG+CGG 0.605721 3_1:-53642294 None:intergenic
GAAGATATTCCACATGTGGT+AGG 0.606378 3_1:-53636739 None:intergenic
TGTCAGGGTGCAATCAATGT+TGG 0.609756 3_1:+53637695 Msa0362440:CDS
CCTCTTTCGATTGACACGAA+AGG 0.609939 3_1:-53637746 None:intergenic
ATTGTGGGAAGAACAGGAAG+TGG 0.610242 3_1:+53642099 Msa0362440:CDS
AAGGGAATCAATTTGAGTGG+TGG 0.610532 3_1:+53638800 Msa0362440:CDS
AACAAGAACTGCTCTAGCAA+AGG 0.612269 3_1:-53640132 None:intergenic
CAAACATCGTTGGATCCTGA+GGG 0.613259 3_1:-53642245 None:intergenic
TTGATTGAAGAGCATTGTGG+AGG 0.613586 3_1:-53640174 None:intergenic
TTTGGCTATGATGTTTGTTG+CGG 0.614434 3_1:+53637614 Msa0362440:CDS
ACACAAAACCACGACAATCG+TGG 0.614698 3_1:-53643394 None:intergenic
TGAAGTGATTCTATGAGCAA+TGG 0.615540 3_1:-53642927 None:intergenic
ATCTTCTTCACTGCACCTAG+TGG 0.616019 3_1:+53636756 Msa0362440:five_prime_UTR
GTAGAAGGCAAATAATGTAG+AGG 0.616299 3_1:-53641320 None:intergenic
CATCTGTGTACTCTTCGAGC+GGG 0.617729 3_1:-53642293 None:intergenic
CAAAAGGGATTCTTCAAGAG+GGG 0.618273 3_1:-53637163 None:intergenic
TACATCACAACAGGTTATGG+AGG 0.620936 3_1:+53639936 Msa0362440:CDS
TTCTTGGCCATCATTTGGCG+AGG 0.621107 3_1:+53641643 Msa0362440:CDS
AACAAGCTTGAGTTGGAGTG+TGG 0.621339 3_1:+53637405 Msa0362440:CDS
CTGAGATTCTAATGAACATG+AGG 0.622456 3_1:+53638036 Msa0362440:CDS
TAAGAGCTGAACAATACTGT+AGG 0.623853 3_1:-53640689 None:intergenic
TGGAGCGAAAACTGGCATTG+TGG 0.624252 3_1:+53642083 Msa0362440:CDS
AGTGCTGTTGATGCTCACAC+AGG 0.626291 3_1:+53638896 Msa0362440:CDS
ATGGAGAAAATTGGAGCATG+GGG 0.627161 3_1:+53642756 Msa0362440:CDS
TGTCGAGAAGAACAAGACCT+TGG 0.627545 3_1:-53637460 None:intergenic
AAGAACTGCTCTAGCAAAGG+TGG 0.627744 3_1:-53640129 None:intergenic
GTTTAGCAACATCACAACTA+CGG 0.629178 3_1:-53637937 None:intergenic
AACTCCTGTTTCAGCAACCG+CGG 0.630635 3_1:+53640040 Msa0362440:CDS
ACACTGCTAGTGTAGTGGAA+TGG 0.630825 3_1:+53641272 Msa0362440:CDS
AGATCTTTCCTGATTCAAGT+GGG 0.631400 3_1:-53638238 None:intergenic
GCAACATTTCTCAGACTGCA+CGG 0.633325 3_1:+53642898 Msa0362440:CDS
TGCGTAAAACAAGAGGCAAG+TGG 0.633892 3_1:-53642038 None:intergenic
TACACAAGGAGGTCAAGCAC+TGG 0.635516 3_1:+53643141 Msa0362440:CDS
AGTAGATGGGAATTTCACTT+GGG 0.636536 3_1:+53638445 Msa0362440:CDS
CTTTCGTGTCAATCGAAAGA+GGG 0.637054 3_1:+53637747 Msa0362440:CDS
GAGAAGGGAATCAATTTGAG+TGG 0.638340 3_1:+53638797 Msa0362440:CDS
ATACCTCAATGATGAAAACA+AGG 0.639337 3_1:+53637572 Msa0362440:CDS
CGTAAAACAAGAGGCAAGTG+GGG 0.640483 3_1:-53642036 None:intergenic
CTGTGATGTCTCAAGTAGCA+TGG 0.640514 3_1:+53640722 Msa0362440:CDS
GCATATGCATGAACCATGGA+TGG 0.641092 3_1:+53637836 Msa0362440:CDS
ATAGCCATGACACAACCACT+AGG 0.644713 3_1:-53636771 None:intergenic
TGAAGAAGATATTCCACATG+TGG 0.646739 3_1:-53636743 None:intergenic
GCTTCCAATATCAGATTCCG+CGG 0.650024 3_1:-53640057 None:intergenic
AGAAGGAAAGCTTGACTCGG+CGG 0.650266 3_1:+53642455 Msa0362440:CDS
GACCACAATTAACCTTGCCA+AGG 0.652428 3_1:+53637443 Msa0362440:CDS
CATTTGATTGAAGAGCATTG+TGG 0.655973 3_1:-53640177 None:intergenic
GAAAGAAGGAAAGCTTGACT+CGG 0.657130 3_1:+53642452 Msa0362440:CDS
CATTGGTAGAAAGCAATGGA+AGG 0.660788 3_1:-53637350 None:intergenic
AACTAGTTGAGCAAGAGATG+AGG 0.660926 3_1:-53643112 None:intergenic
GTTGGCATATGCATGAACCA+TGG 0.663259 3_1:+53637832 Msa0362440:CDS
ACTGTTGATGCTGAAAGGAT+CGG 0.666789 3_1:+53637801 Msa0362440:CDS
AGTATTCCAAATGTCGCATG+GGG 0.670428 3_1:+53640661 Msa0362440:CDS
CTCATTGAAGAAAGACCTCG+AGG 0.677555 3_1:+53638742 Msa0362440:CDS
TCTTTCACAAATACTCACTG+TGG 0.684267 3_1:+53639980 Msa0362440:CDS
CACGAAATGGTAAAACCTCG+AGG 0.687751 3_1:-53638757 None:intergenic
AGAAGAACAAGACCTTGGCA+AGG 0.689996 3_1:-53637455 None:intergenic
TCGAAAGAGGGATACAGCAG+CGG 0.691325 3_1:+53637759 Msa0362440:CDS
GTTACCACAGCAATAAACGT+CGG 0.696626 3_1:-53638188 None:intergenic
CACAGATGACAAGATTTGGG+AGG 0.701218 3_1:+53642308 Msa0362440:CDS
GATGTTGCTAAACCATCCCA+TGG 0.704871 3_1:+53637947 Msa0362440:CDS
GTCAACTTGGTGATGAAGTG+AGG 0.705255 3_1:+53642427 Msa0362440:CDS
TCTTAAGTAGAACACGTCCG+AGG 0.708328 3_1:-53642796 None:intergenic
CAATCACCGTGGATACAGAG+TGG 0.715340 3_1:+53638647 Msa0362440:CDS
CTTACGTTGCTCAATCACCG+TGG 0.730158 3_1:+53638636 Msa0362440:CDS
GCTATATCAGAATTACCTCG+TGG 0.745143 3_1:-53638413 None:intergenic
GTAGTGGAGAAGCTGCCACG+AGG 0.772822 3_1:+53638398 Msa0362440:CDS
TAGTTGCAGAGTACACAAGG+AGG 0.800166 3_1:+53643130 Msa0362440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTTTATGGAATATTAT+AGG + chr3_1:53642392-53642411 Msa0362440:intron 10.0%
!!! AAATTATTTTTATTATCCAT+TGG - chr3_1:53642561-53642580 None:intergenic 10.0%
!!! ATTTATTTTATCCTTGTTAT+AGG + chr3_1:53636863-53636882 Msa0362440:intron 15.0%
!!! AGTTTAATTTCTTGTATAAT+TGG + chr3_1:53638566-53638585 Msa0362440:CDS 15.0%
!!! TTTTTCATGATAAAATAAGT+TGG + chr3_1:53638980-53638999 Msa0362440:intron 15.0%
!! AATAAAGAATATAGTGAATT+TGG - chr3_1:53639175-53639194 None:intergenic 15.0%
!! AATTCACTATATTCTTTATT+AGG + chr3_1:53639175-53639194 Msa0362440:intron 15.0%
!! ATTTGTGAAAGAAATATAAT+AGG - chr3_1:53639972-53639991 None:intergenic 15.0%
!! AAAAAAACATTTCATATATG+AGG - chr3_1:53641715-53641734 None:intergenic 15.0%
!! TAAACAATGTTTCATAATTT+GGG + chr3_1:53641928-53641947 Msa0362440:intron 15.0%
!! ACATTTATCAGTAAAAAAAT+TGG - chr3_1:53643027-53643046 None:intergenic 15.0%
!! GTGTATAAATTTAAGAATAA+TGG + chr3_1:53643229-53643248 Msa0362440:three_prime_UTR 15.0%
!! TTTACATCGTATGTATTTAT+CGG + chr3_1:53636895-53636914 Msa0362440:intron 20.0%
!!! AAAAATTTAGTTCCTGATAA+AGG + chr3_1:53637074-53637093 Msa0362440:intron 20.0%
!!! TAAAAATGAAGGCTATATTT+TGG + chr3_1:53637596-53637615 Msa0362440:CDS 20.0%
!! ATTCAAAGATAAAAGAATGA+AGG + chr3_1:53638007-53638026 Msa0362440:CDS 20.0%
!!! TATGTTTTTCAATGTTGTAT+TGG - chr3_1:53638483-53638502 None:intergenic 20.0%
!! ATAGAGGATAATATACTATT+TGG + chr3_1:53638674-53638693 Msa0362440:CDS 20.0%
!!! AAGAAGGTTTTATCAATAAT+GGG - chr3_1:53639014-53639033 None:intergenic 20.0%
!!! AAAGAAGGTTTTATCAATAA+TGG - chr3_1:53639015-53639034 None:intergenic 20.0%
!! TTTCAAAAATCAAGTATTAC+CGG + chr3_1:53639753-53639772 Msa0362440:CDS 20.0%
!!! GAGATTGTTTAAAATTGATT+TGG + chr3_1:53640405-53640424 Msa0362440:intron 20.0%
!! TGCATTTAAATATTTGATCA+AGG - chr3_1:53640969-53640988 None:intergenic 20.0%
!! GTAAACAATGTTTCATAATT+TGG + chr3_1:53641927-53641946 Msa0362440:intron 20.0%
!! ATTGTATCTATCCTTAAATA+AGG + chr3_1:53641986-53642005 Msa0362440:intron 20.0%
!!! TTTGTATAACTTGCAAAAAT+AGG - chr3_1:53642368-53642387 None:intergenic 20.0%
!!! TGTTTGCTGAATAATATTAT+CGG - chr3_1:53642873-53642892 None:intergenic 20.0%
! TACATACGATGTAAATACTT+CGG - chr3_1:53636890-53636909 None:intergenic 25.0%
! TTGGAAAATGAAGCTAATTA+GGG - chr3_1:53637048-53637067 None:intergenic 25.0%
! ATTGGAAAATGAAGCTAATT+AGG - chr3_1:53637049-53637068 None:intergenic 25.0%
!!! GAACTAAATTTTTTGTGGAT+TGG - chr3_1:53637067-53637086 None:intergenic 25.0%
!!! ATCAGGAACTAAATTTTTTG+TGG - chr3_1:53637072-53637091 None:intergenic 25.0%
!! TTCATTTCTTAGTGTCTTTT+TGG - chr3_1:53637226-53637245 None:intergenic 25.0%
! AAAAGTTGAAAAAGTTCCAT+TGG - chr3_1:53637382-53637401 None:intergenic 25.0%
! ATTGAACAAGATTCTCTATA+AGG - chr3_1:53637554-53637573 None:intergenic 25.0%
!! TTTATTCTTCATAGAAGTGT+AGG + chr3_1:53637885-53637904 Msa0362440:CDS 25.0%
!! TTATTCTTCATAGAAGTGTA+GGG + chr3_1:53637886-53637905 Msa0362440:CDS 25.0%
! TATCAAAGGTTATTCATCTT+AGG + chr3_1:53638093-53638112 Msa0362440:CDS 25.0%
! ATAGCAATTGAAATAGTAGA+TGG + chr3_1:53638431-53638450 Msa0362440:CDS 25.0%
! TAGCAATTGAAATAGTAGAT+GGG + chr3_1:53638432-53638451 Msa0362440:CDS 25.0%
!! TTAGAGTTTTTCATTGTATG+AGG + chr3_1:53638507-53638526 Msa0362440:CDS 25.0%
!! TAGAGTTTTTCATTGTATGA+GGG + chr3_1:53638508-53638527 Msa0362440:CDS 25.0%
! AAACAATACCTTAAAGAGAT+GGG - chr3_1:53638924-53638943 None:intergenic 25.0%
! AAAACAATACCTTAAAGAGA+TGG - chr3_1:53638925-53638944 None:intergenic 25.0%
!!! AGAAGGTTTTATCAATAATG+GGG - chr3_1:53639013-53639032 None:intergenic 25.0%
! GATTTAGATTGTTCTTATTC+CGG + chr3_1:53639301-53639320 Msa0362440:intron 25.0%
!!! TCACTGTTTTTGTTTTCAAA+AGG - chr3_1:53639447-53639466 None:intergenic 25.0%
! CTCTTTCTTACAATTCATTT+AGG + chr3_1:53639596-53639615 Msa0362440:intron 25.0%
! TTCAAAAATCAAGTATTACC+GGG + chr3_1:53639754-53639773 Msa0362440:CDS 25.0%
! GAAAACATAAACGATCAAAA+AGG + chr3_1:53639822-53639841 Msa0362440:CDS 25.0%
!!! AACCATTGATTTAAATCACA+CGG - chr3_1:53640385-53640404 None:intergenic 25.0%
! TTTCATGCCATAGTAAAAAT+CGG - chr3_1:53640470-53640489 None:intergenic 25.0%
! TTCTATTCAATATGCTAAGT+TGG - chr3_1:53640567-53640586 None:intergenic 25.0%
! TCAGAAAAATGTTGTATAAC+TGG - chr3_1:53641151-53641170 None:intergenic 25.0%
!!! CATTTTTCTGAAACAATTTC+TGG + chr3_1:53641160-53641179 Msa0362440:CDS 25.0%
! ATTGAAATGAAATACTCACT+AGG - chr3_1:53641385-53641404 None:intergenic 25.0%
! AATTTCGTATCTTTGCAATT+TGG + chr3_1:53641529-53641548 Msa0362440:CDS 25.0%
!! TGAGGTAAATTGTTATTGAA+CGG - chr3_1:53641697-53641716 None:intergenic 25.0%
! ACATGAAAATGAGAATCATT+AGG + chr3_1:53641803-53641822 Msa0362440:intron 25.0%
! AACAAGTAGTTATTATGCAA+TGG + chr3_1:53641879-53641898 Msa0362440:intron 25.0%
! TATATTTACTTACAAGTCTC+AGG + chr3_1:53641954-53641973 Msa0362440:intron 25.0%
! ATATTTACTTACAAGTCTCA+GGG + chr3_1:53641955-53641974 Msa0362440:intron 25.0%
!! ATAACTTGCAAAAATAGGAT+CGG - chr3_1:53642363-53642382 None:intergenic 25.0%
! AACAATGGTTAATATTCCAA+TGG + chr3_1:53642542-53642561 Msa0362440:intron 25.0%
! CAAATGGAAAAAGAAAAAAC+TGG - chr3_1:53642997-53643016 None:intergenic 25.0%
! AAAAATTGGCGAAAAACAAA+TGG - chr3_1:53643013-53643032 None:intergenic 25.0%
GTACAAGAAAGTAGAAACAA+GGG - chr3_1:53636822-53636841 None:intergenic 30.0%
AGTACAAGAAAGTAGAAACA+AGG - chr3_1:53636823-53636842 None:intergenic 30.0%
!! AACTTTTGACCACTTGTTAA+AGG + chr3_1:53636987-53637006 Msa0362440:intron 30.0%
ACATGAATACCTTTAACAAG+TGG - chr3_1:53636999-53637018 None:intergenic 30.0%
TGGAAAATGAAGCTAATTAG+GGG - chr3_1:53637047-53637066 None:intergenic 30.0%
TAATAGAGGAAACCTTTATC+AGG - chr3_1:53637089-53637108 None:intergenic 30.0%
GATAAAGGTTTCCTCTATTA+CGG + chr3_1:53637089-53637108 Msa0362440:intron 30.0%
ATAAAGGTTTCCTCTATTAC+GGG + chr3_1:53637090-53637109 Msa0362440:intron 30.0%
AAATCCAGCATTTGAATAAC+TGG - chr3_1:53637256-53637275 None:intergenic 30.0%
!! TTTTAGAAACAAGCTTGAGT+TGG + chr3_1:53637398-53637417 Msa0362440:CDS 30.0%
TGGCAAAGAATTCTTATATC+TGG + chr3_1:53637483-53637502 Msa0362440:CDS 30.0%
ACAAGATTCTCTATAAGGTA+GGG - chr3_1:53637549-53637568 None:intergenic 30.0%
AACAAGATTCTCTATAAGGT+AGG - chr3_1:53637550-53637569 None:intergenic 30.0%
ATACCTCAATGATGAAAACA+AGG + chr3_1:53637572-53637591 Msa0362440:CDS 30.0%
GAAAACAAGGCTAAAAATGA+AGG + chr3_1:53637585-53637604 Msa0362440:CDS 30.0%
GTGTCAATGATATATGCTAA+AGG + chr3_1:53637717-53637736 Msa0362440:CDS 30.0%
! TATTCTTCATAGAAGTGTAG+GGG + chr3_1:53637887-53637906 Msa0362440:CDS 30.0%
GAAGTTTCAAGGTAAGTTAA+TGG + chr3_1:53637983-53638002 Msa0362440:CDS 30.0%
GATTCTTAAACTTCAAGCAT+GGG + chr3_1:53638058-53638077 Msa0362440:CDS 30.0%
TATTCATCTTAGGAAGTTAG+AGG + chr3_1:53638103-53638122 Msa0362440:CDS 30.0%
ATGTGGCTAAAGAAATTTCT+TGG + chr3_1:53638128-53638147 Msa0362440:CDS 30.0%
TTTATTGCTGTGGTAACTTT+CGG + chr3_1:53638194-53638213 Msa0362440:CDS 30.0%
GCAATCATTGAAATTGTATC+TGG - chr3_1:53638314-53638333 None:intergenic 30.0%
TATACTATTTGGTAGAGAGA+TGG + chr3_1:53638685-53638704 Msa0362440:CDS 30.0%
GAAGATATATATCAGCATCT+TGG - chr3_1:53638862-53638881 None:intergenic 30.0%
!! AAGGTTTTATCAATAATGGG+GGG - chr3_1:53639011-53639030 None:intergenic 30.0%
!! GAAGGTTTTATCAATAATGG+GGG - chr3_1:53639012-53639031 None:intergenic 30.0%
TAAAACCTTCTTTGTTCCTA+AGG + chr3_1:53639022-53639041 Msa0362440:intron 30.0%
! GAGAATTTGAGTTTGAATTC+TGG + chr3_1:53639058-53639077 Msa0362440:intron 30.0%
! ATTTGAGTTTGAATTCTGGT+TGG + chr3_1:53639062-53639081 Msa0362440:intron 30.0%
TTATTAGGTATTTCTCCAAG+TGG + chr3_1:53639190-53639209 Msa0362440:intron 30.0%
TGAAGCATATCATATATCAC+CGG - chr3_1:53639323-53639342 None:intergenic 30.0%
!!! TAGTTTTGTTGTGCATTAGA+TGG + chr3_1:53639363-53639382 Msa0362440:intron 30.0%
ATTAACTTCTGTACTGTTTC+AGG + chr3_1:53639408-53639427 Msa0362440:intron 30.0%
TTCATTTAGGTCATGAAAGA+AGG + chr3_1:53639609-53639628 Msa0362440:intron 30.0%
AAATGTATTCCTTCTCTCTA+AGG - chr3_1:53639736-53639755 None:intergenic 30.0%
TCAAAAATCAAGTATTACCG+GGG + chr3_1:53639755-53639774 Msa0362440:CDS 30.0%
AAATACATCACAACAGGTTA+TGG + chr3_1:53639933-53639952 Msa0362440:CDS 30.0%
TACAGATTGCAAGCAATTAT+TGG + chr3_1:53640006-53640025 Msa0362440:CDS 30.0%
CTATTAAGAATTCTTCCACT+TGG - chr3_1:53640248-53640267 None:intergenic 30.0%
AACCGTGTGATTTAAATCAA+TGG + chr3_1:53640380-53640399 Msa0362440:intron 30.0%
!! CAAATGACCGATTTTTACTA+TGG + chr3_1:53640460-53640479 Msa0362440:intron 30.0%
TACTCATATCTATTGCACTT+TGG - chr3_1:53640645-53640664 None:intergenic 30.0%
TAAACAACGCTATAATAGTG+AGG + chr3_1:53640916-53640935 Msa0362440:intron 30.0%
ACACTAGCAGTGTATAATTT+AGG - chr3_1:53641265-53641284 None:intergenic 30.0%
TACATTATTTGCCTTCTACT+TGG + chr3_1:53641324-53641343 Msa0362440:CDS 30.0%
AGTTAGATTGTACAGCATTT+AGG - chr3_1:53641508-53641527 None:intergenic 30.0%
! TAAATTGTTATTGAACGGTG+TGG - chr3_1:53641692-53641711 None:intergenic 30.0%
AGTAGTTATTATGCAATGGT+TGG + chr3_1:53641883-53641902 Msa0362440:intron 30.0%
!! TTCACACAATGCCTTATTTA+AGG - chr3_1:53642000-53642019 None:intergenic 30.0%
ATTAATATTTGTCCTGCAAC+AGG - chr3_1:53642165-53642184 None:intergenic 30.0%
AACATCAACATCTCATTGAT+TGG + chr3_1:53642189-53642208 Msa0362440:CDS 30.0%
TGATTGGAATTCATGATTTG+CGG + chr3_1:53642205-53642224 Msa0362440:CDS 30.0%
TCACTGTACATTTACAACAA+TGG + chr3_1:53642527-53642546 Msa0362440:intron 30.0%
CTTAATCGTCACTTAATACT+GGG + chr3_1:53642644-53642663 Msa0362440:intron 30.0%
TTACTGAGAATGGAGAAAAT+TGG + chr3_1:53642747-53642766 Msa0362440:CDS 30.0%
ACTTAAGAAAAGCAAGATCT+TGG + chr3_1:53642811-53642830 Msa0362440:CDS 30.0%
TGAAGAAGATATTCCACATG+TGG - chr3_1:53636746-53636765 None:intergenic 35.0%
GAAAGTAGAAACAAGGGTTA+TGG - chr3_1:53636816-53636835 None:intergenic 35.0%
AATACTTCGGACCTATAACA+AGG - chr3_1:53636877-53636896 None:intergenic 35.0%
TAGATTCTTCTGTCTCAGTA+TGG + chr3_1:53636935-53636954 Msa0362440:intron 35.0%
! GGTCTCTTTCTTTGTTATGT+TGG + chr3_1:53637111-53637130 Msa0362440:intron 35.0%
TCAAAAGGGATTCTTCAAGA+GGG - chr3_1:53637167-53637186 None:intergenic 35.0%
TTCAAAAGGGATTCTTCAAG+AGG - chr3_1:53637168-53637187 None:intergenic 35.0%
! CTTGAAGAATCCCTTTTGAA+TGG + chr3_1:53637168-53637187 Msa0362440:CDS 35.0%
GCTATCTTCACCATTCAAAA+GGG - chr3_1:53637181-53637200 None:intergenic 35.0%
TCAACCAGTTATTCAAATGC+TGG + chr3_1:53637249-53637268 Msa0362440:CDS 35.0%
TCAGCATTCTTACATTCTCA+TGG + chr3_1:53637277-53637296 Msa0362440:CDS 35.0%
ATGACTCCACTAATAGCTTT+AGG + chr3_1:53637300-53637319 Msa0362440:CDS 35.0%
TGATTGCCTAAAGCTATTAG+TGG - chr3_1:53637309-53637328 None:intergenic 35.0%
TACACATGTGCTTCTTATGT+AGG + chr3_1:53637522-53637541 Msa0362440:CDS 35.0%
!!! TAGCCTTGTTTTCATCATTG+AGG - chr3_1:53637578-53637597 None:intergenic 35.0%
! TTTGGCTATGATGTTTGTTG+CGG + chr3_1:53637614-53637633 Msa0362440:CDS 35.0%
! ATGTTTAAGTTCCAACAGGT+TGG + chr3_1:53637672-53637691 Msa0362440:CDS 35.0%
TAATGACTGTTGATGCTGAA+AGG + chr3_1:53637796-53637815 Msa0362440:CDS 35.0%
! AAAGGATCGGTGAATTTTGT+TGG + chr3_1:53637814-53637833 Msa0362440:CDS 35.0%
GTTTAGCAACATCACAACTA+CGG - chr3_1:53637940-53637959 None:intergenic 35.0%
CTGAGATTCTAATGAACATG+AGG + chr3_1:53638036-53638055 Msa0362440:CDS 35.0%
GGATTCTTAAACTTCAAGCA+TGG + chr3_1:53638057-53638076 Msa0362440:CDS 35.0%
GGAGTTGAAGTTCTTATCAA+AGG + chr3_1:53638079-53638098 Msa0362440:CDS 35.0%
AGATCTTTCCTGATTCAAGT+GGG - chr3_1:53638241-53638260 None:intergenic 35.0%
AAGATCTTTCCTGATTCAAG+TGG - chr3_1:53638242-53638261 None:intergenic 35.0%
GTATCTGGAAGATTATAGAC+AGG - chr3_1:53638299-53638318 None:intergenic 35.0%
TTCAATGATTGCACAAACCA+AGG + chr3_1:53638322-53638341 Msa0362440:CDS 35.0%
AAACCAAGGTTTCTCTAGTT+AGG + chr3_1:53638336-53638355 Msa0362440:CDS 35.0%
AATCCTAACTAGAGAAACCT+TGG - chr3_1:53638342-53638361 None:intergenic 35.0%
TAGTAGATGGGAATTTCACT+TGG + chr3_1:53638444-53638463 Msa0362440:CDS 35.0%
AGTAGATGGGAATTTCACTT+GGG + chr3_1:53638445-53638464 Msa0362440:CDS 35.0%
GTGAAATACCGAAGATATCT+GGG + chr3_1:53638588-53638607 Msa0362440:CDS 35.0%
! TTCAAGTTCCCAGATATCTT+CGG - chr3_1:53638599-53638618 None:intergenic 35.0%
TATTTGGTAGAGAGATGGAT+AGG + chr3_1:53638690-53638709 Msa0362440:CDS 35.0%
ATTTGGTAGAGAGATGGATA+GGG + chr3_1:53638691-53638710 Msa0362440:CDS 35.0%
ATAATGGTCTGATCACGAAA+TGG - chr3_1:53638773-53638792 None:intergenic 35.0%
TTTCGTGATCAGACCATTAT+TGG + chr3_1:53638773-53638792 Msa0362440:CDS 35.0%
! ATTCTGGTTGGAACATTTCT+TGG + chr3_1:53639074-53639093 Msa0362440:intron 35.0%
! CAAGTGGAGACATCAATTTT+GGG + chr3_1:53639206-53639225 Msa0362440:intron 35.0%
!!! TTTTGGGATGAGAACTTTCA+TGG + chr3_1:53639222-53639241 Msa0362440:intron 35.0%
GAAGGAAGAATAACACAATC+AGG + chr3_1:53639627-53639646 Msa0362440:CDS 35.0%
TACAATGACATTCTTACGTC+AGG + chr3_1:53639654-53639673 Msa0362440:CDS 35.0%
!! ACCGATTTTATGGAACTTGT+AGG + chr3_1:53639678-53639697 Msa0362440:CDS 35.0%
GCCTACAAGTTCCATAAAAT+CGG - chr3_1:53639682-53639701 None:intergenic 35.0%
! TCTTGAACAAGTTGTCCTTT+TGG - chr3_1:53639870-53639889 None:intergenic 35.0%
TCAAGATGAAGAACGAGAAA+AGG + chr3_1:53639884-53639903 Msa0362440:CDS 35.0%
CAAGATGAAGAACGAGAAAA+GGG + chr3_1:53639885-53639904 Msa0362440:CDS 35.0%
! GAGTTGAGTTTAAAGTGTTC+TGG + chr3_1:53639910-53639929 Msa0362440:CDS 35.0%
! TTCTGGAAATACATCACAAC+AGG + chr3_1:53639927-53639946 Msa0362440:CDS 35.0%
TCTTTCACAAATACTCACTG+TGG + chr3_1:53639980-53639999 Msa0362440:CDS 35.0%
GATTGCAAGCAATTATTGGA+TGG + chr3_1:53640010-53640029 Msa0362440:CDS 35.0%
AAGCAATTATTGGATGGCTT+TGG + chr3_1:53640016-53640035 Msa0362440:CDS 35.0%
TATTGGAAGCCTTACTCTTA+TGG + chr3_1:53640070-53640089 Msa0362440:CDS 35.0%
TATGGTTGTCTACCTTTCTT+TGG + chr3_1:53640088-53640107 Msa0362440:CDS 35.0%
AAATTCCAACTGCCAAAGAA+AGG - chr3_1:53640103-53640122 None:intergenic 35.0%
!! CATTTGATTGAAGAGCATTG+TGG - chr3_1:53640180-53640199 None:intergenic 35.0%
AATTGTTTACCTCATCACAG+CGG + chr3_1:53640313-53640332 Msa0362440:intron 35.0%
!!! CAATTTCGCTTTTTTACTGC+AGG + chr3_1:53640609-53640628 Msa0362440:intron 35.0%
!! GATAGTATTGATTCCTGTCA+TGG + chr3_1:53640753-53640772 Msa0362440:CDS 35.0%
AAACGACACCTAATATGACA+CGG - chr3_1:53640808-53640827 None:intergenic 35.0%
!! GTCATATTAGGTGTCGTTTA+AGG + chr3_1:53640809-53640828 Msa0362440:intron 35.0%
! TGTTGAGCGACTAATTTTCA+TGG + chr3_1:53640855-53640874 Msa0362440:intron 35.0%
AATGTTGTATAACTGGTGCT+TGG - chr3_1:53641144-53641163 None:intergenic 35.0%
ATTATACACTGCTAGTGTAG+TGG + chr3_1:53641267-53641286 Msa0362440:CDS 35.0%
GTAGAAGGCAAATAATGTAG+AGG - chr3_1:53641323-53641342 None:intergenic 35.0%
TACCAAGAAAACCAAGTAGA+AGG - chr3_1:53641338-53641357 None:intergenic 35.0%
TAGGATCAGCAATTGAACTT+GGG - chr3_1:53641366-53641385 None:intergenic 35.0%
! TGGCTGTCTTTTATTACAAG+AGG - chr3_1:53641614-53641633 None:intergenic 35.0%
!! AATAAGGCATTGTGTGAAAC+AGG + chr3_1:53642002-53642021 Msa0362440:intron 35.0%
AGTACACAGATGACAAGATT+TGG + chr3_1:53642304-53642323 Msa0362440:CDS 35.0%
GTACACAGATGACAAGATTT+GGG + chr3_1:53642305-53642324 Msa0362440:CDS 35.0%
GCTTAATCGTCACTTAATAC+TGG + chr3_1:53642643-53642662 Msa0362440:intron 35.0%
AATGGAGAAAATTGGAGCAT+GGG + chr3_1:53642755-53642774 Msa0362440:CDS 35.0%
TGAAGTGATTCTATGAGCAA+TGG - chr3_1:53642930-53642949 None:intergenic 35.0%
!!! ATGGTTTTGTTTCTCAGTGA+AGG + chr3_1:53642965-53642984 Msa0362440:CDS 35.0%
AATGTGAACATGATTCCTAC+AGG + chr3_1:53643042-53643061 Msa0362440:intron 35.0%
ATGTGAACATGATTCCTACA+GGG + chr3_1:53643043-53643062 Msa0362440:intron 35.0%
TTCACCAAAGAAGTTGCTTA+AGG + chr3_1:53643083-53643102 Msa0362440:CDS 35.0%
TTGTCCTTAAGCAACTTCTT+TGG - chr3_1:53643090-53643109 None:intergenic 35.0%
AACAGAAATTGCCTGTCAAT+TGG + chr3_1:53643293-53643312 Msa0362440:three_prime_UTR 35.0%
ATTATACTACTGCACTGTTC+TGG - chr3_1:53643341-53643360 None:intergenic 35.0%
! GTTTTGTGTCCAATCCAATA+TGG + chr3_1:53643408-53643427 Msa0362440:three_prime_UTR 35.0%
ATTCCACATGTGGTAGGAAA+TGG - chr3_1:53636736-53636755 None:intergenic 40.0%
GAAGATATTCCACATGTGGT+AGG - chr3_1:53636742-53636761 None:intergenic 40.0%
CGTATGTATTTATCGGCGTT+TGG + chr3_1:53636902-53636921 Msa0362440:intron 40.0%
AGCTAATTAGGGGAATGCAT+CGG - chr3_1:53637037-53637056 None:intergenic 40.0%
AAGAAAGAGACCCGTAATAG+AGG - chr3_1:53637103-53637122 None:intergenic 40.0%
CAAAAGGGATTCTTCAAGAG+GGG - chr3_1:53637166-53637185 None:intergenic 40.0%
CGCTATCTTCACCATTCAAA+AGG - chr3_1:53637182-53637201 None:intergenic 40.0%
CATTGGTAGAAAGCAATGGA+AGG - chr3_1:53637353-53637372 None:intergenic 40.0%
CTGTCATTGGTAGAAAGCAA+TGG - chr3_1:53637357-53637376 None:intergenic 40.0%
! AGTTGGAGTGTGGTAATGTT+AGG + chr3_1:53637415-53637434 Msa0362440:CDS 40.0%
! CTGGATGTTTAAGTTCCAAC+AGG + chr3_1:53637668-53637687 Msa0362440:CDS 40.0%
CTCTTTCGATTGACACGAAA+GGG - chr3_1:53637748-53637767 None:intergenic 40.0%
CTTTCGTGTCAATCGAAAGA+GGG + chr3_1:53637747-53637766 Msa0362440:CDS 40.0%
ACTGTTGATGCTGAAAGGAT+CGG + chr3_1:53637801-53637820 Msa0362440:CDS 40.0%
TCACTGCAAGAGAAGTTTCA+AGG + chr3_1:53637972-53637991 Msa0362440:CDS 40.0%
TTAGGAAGTTAGAGGAGATG+TGG + chr3_1:53638111-53638130 Msa0362440:CDS 40.0%
GTTACCACAGCAATAAACGT+CGG - chr3_1:53638191-53638210 None:intergenic 40.0%
AAGTCTGAATGTTGCAAGAG+CGG - chr3_1:53638267-53638286 None:intergenic 40.0%
! TCTTCGCTTAGATGATTTGC+AGG + chr3_1:53638370-53638389 Msa0362440:CDS 40.0%
GCTATATCAGAATTACCTCG+TGG - chr3_1:53638416-53638435 None:intergenic 40.0%
GGTGAAATACCGAAGATATC+TGG + chr3_1:53638587-53638606 Msa0362440:CDS 40.0%
GAAGATATCTGGGAACTTGA+AGG + chr3_1:53638598-53638617 Msa0362440:CDS 40.0%
CTTGAAGGTTTGTGGAACAA+AGG + chr3_1:53638613-53638632 Msa0362440:CDS 40.0%
GGATAGGGATAAGTATGAGA+AGG + chr3_1:53638706-53638725 Msa0362440:CDS 40.0%
TCAGACCATTATTGGAGAGA+AGG + chr3_1:53638781-53638800 Msa0362440:CDS 40.0%
CAGACCATTATTGGAGAGAA+GGG + chr3_1:53638782-53638801 Msa0362440:CDS 40.0%
GATTCCCTTCTCTCCAATAA+TGG - chr3_1:53638789-53638808 None:intergenic 40.0%
GAGAAGGGAATCAATTTGAG+TGG + chr3_1:53638797-53638816 Msa0362440:CDS 40.0%
AAGGGAATCAATTTGAGTGG+TGG + chr3_1:53638800-53638819 Msa0362440:CDS 40.0%
TGAGCATCAACAGCACTAAA+GGG - chr3_1:53638893-53638912 None:intergenic 40.0%
TCAAATTCTCCCGAACGATT+CGG - chr3_1:53639048-53639067 None:intergenic 40.0%
CCAAAATTGATGTCTCCACT+TGG - chr3_1:53639208-53639227 None:intergenic 40.0%
! CCAAGTGGAGACATCAATTT+TGG + chr3_1:53639205-53639224 Msa0362440:intron 40.0%
TTGTTGTGCATTAGATGGCA+AGG + chr3_1:53639368-53639387 Msa0362440:intron 40.0%
ACAAGTATCAGATCAGCATC+AGG - chr3_1:53639499-53639518 None:intergenic 40.0%
!! TACGTCAGGAACCGATTTTA+TGG + chr3_1:53639668-53639687 Msa0362440:CDS 40.0%
CAGTTAAGTCCTTAGAGAGA+AGG + chr3_1:53639724-53639743 Msa0362440:CDS 40.0%
TGATAAAACTGTGTCTTCCC+CGG - chr3_1:53639775-53639794 None:intergenic 40.0%
TACATCACAACAGGTTATGG+AGG + chr3_1:53639936-53639955 Msa0362440:CDS 40.0%
GGTAGACAACCATAAGAGTA+AGG - chr3_1:53640082-53640101 None:intergenic 40.0%
AACAAGAACTGCTCTAGCAA+AGG - chr3_1:53640135-53640154 None:intergenic 40.0%
! GCAGTTCTTGTTGTAATAGC+TGG + chr3_1:53640143-53640162 Msa0362440:CDS 40.0%
!! TTGATTGAAGAGCATTGTGG+AGG - chr3_1:53640177-53640196 None:intergenic 40.0%
GTCACGACATAACTCTTTAC+TGG + chr3_1:53640273-53640292 Msa0362440:intron 40.0%
AATATGTTTCCGCTGTGATG+AGG - chr3_1:53640325-53640344 None:intergenic 40.0%
TACTATGGCATGAAACTGCT+TGG + chr3_1:53640475-53640494 Msa0362440:intron 40.0%
TGAGTATTCCAAATGTCGCA+TGG + chr3_1:53640659-53640678 Msa0362440:CDS 40.0%
GAGTATTCCAAATGTCGCAT+GGG + chr3_1:53640660-53640679 Msa0362440:CDS 40.0%
AGTATTCCAAATGTCGCATG+GGG + chr3_1:53640661-53640680 Msa0362440:CDS 40.0%
AACGACACCTAATATGACAC+GGG - chr3_1:53640807-53640826 None:intergenic 40.0%
CACTTGGTTACTTAGCAAGT+TGG - chr3_1:53641056-53641075 None:intergenic 40.0%
!! GCTGCATATATAGAAGCACT+TGG - chr3_1:53641072-53641091 None:intergenic 40.0%
CGTGAGTTATCACGATTAAC+CGG + chr3_1:53641112-53641131 Msa0362440:CDS 40.0%
GGAATGGCTTAGTTTCAGAT+TGG + chr3_1:53641288-53641307 Msa0362440:CDS 40.0%
!! TGCCTTCTACTTGGTTTTCT+TGG + chr3_1:53641333-53641352 Msa0362440:CDS 40.0%
CTAGGATCAGCAATTGAACT+TGG - chr3_1:53641367-53641386 None:intergenic 40.0%
ATGCAACTTCATTCCTTTCC+AGG + chr3_1:53641449-53641468 Msa0362440:intron 40.0%
! ATTCCTTTCCAGGTATTGCA+GGG + chr3_1:53641459-53641478 Msa0362440:intron 40.0%
!! TTACAAGAGGTGCTTCACTT+GGG - chr3_1:53641601-53641620 None:intergenic 40.0%
!! ATTACAAGAGGTGCTTCACT+TGG - chr3_1:53641602-53641621 None:intergenic 40.0%
AATGATGGCCAAGAATGATC+TGG - chr3_1:53641638-53641657 None:intergenic 40.0%
GATCATTCTTGGCCATCATT+TGG + chr3_1:53641638-53641657 Msa0362440:CDS 40.0%
GGTTCGTATTCAGGATTTAC+AGG + chr3_1:53641664-53641683 Msa0362440:CDS 40.0%
CTGAGGGATTATGCTTAGTT+TGG - chr3_1:53642232-53642251 None:intergenic 40.0%
CAAACTAAGCATAATCCCTC+AGG + chr3_1:53642230-53642249 Msa0362440:CDS 40.0%
AGGATCCAACGATGTTTGAA+GGG + chr3_1:53642250-53642269 Msa0362440:CDS 40.0%
! GCTCTAGATATGTGTCAACT+TGG + chr3_1:53642414-53642433 Msa0362440:CDS 40.0%
GATGAAGTGAGGAAGAAAGA+AGG + chr3_1:53642438-53642457 Msa0362440:CDS 40.0%
GAAAGAAGGAAAGCTTGACT+CGG + chr3_1:53642452-53642471 Msa0362440:CDS 40.0%
TAATCACGCATCTTGAGTTC+TGG + chr3_1:53642721-53642740 Msa0362440:intron 40.0%
GAATGGAGAAAATTGGAGCA+TGG + chr3_1:53642754-53642773 Msa0362440:CDS 40.0%
ATGGAGAAAATTGGAGCATG+GGG + chr3_1:53642756-53642775 Msa0362440:CDS 40.0%
TATTCCTCAATAAGCCCTGT+AGG - chr3_1:53643060-53643079 None:intergenic 40.0%
AACTAGTTGAGCAAGAGATG+AGG - chr3_1:53643115-53643134 None:intergenic 40.0%
AACTAGTTGCAGAGTACACA+AGG + chr3_1:53643127-53643146 Msa0362440:CDS 40.0%
GCTATAAGAGTCCAATTGAC+AGG - chr3_1:53643307-53643326 None:intergenic 40.0%
CAACCATTTCCTACCACATG+TGG + chr3_1:53636730-53636749 Msa0362440:five_prime_UTR 45.0%
ATCTTCTTCACTGCACCTAG+TGG + chr3_1:53636756-53636775 Msa0362440:five_prime_UTR 45.0%
ATAGCCATGACACAACCACT+AGG - chr3_1:53636774-53636793 None:intergenic 45.0%
TCTACCAATGACAGTGCCAA+TGG + chr3_1:53637363-53637382 Msa0362440:CDS 45.0%
AGTTCCATTGGCACTGTCAT+TGG - chr3_1:53637370-53637389 None:intergenic 45.0%
!! AACAAGCTTGAGTTGGAGTG+TGG + chr3_1:53637405-53637424 Msa0362440:CDS 45.0%
GACCACAATTAACCTTGCCA+AGG + chr3_1:53637443-53637462 Msa0362440:CDS 45.0%
GACCTTGGCAAGGTTAATTG+TGG - chr3_1:53637448-53637467 None:intergenic 45.0%
AGAAGAACAAGACCTTGGCA+AGG - chr3_1:53637458-53637477 None:intergenic 45.0%
TGTCGAGAAGAACAAGACCT+TGG - chr3_1:53637463-53637482 None:intergenic 45.0%
!! AGGTCTTGTTCTTCTCGACA+TGG + chr3_1:53637463-53637482 Msa0362440:CDS 45.0%
TGTCAGGGTGCAATCAATGT+TGG + chr3_1:53637695-53637714 Msa0362440:CDS 45.0%
CCTCTTTCGATTGACACGAA+AGG - chr3_1:53637749-53637768 None:intergenic 45.0%
CCTTTCGTGTCAATCGAAAG+AGG + chr3_1:53637746-53637765 Msa0362440:CDS 45.0%
GTTGGCATATGCATGAACCA+TGG + chr3_1:53637832-53637851 Msa0362440:CDS 45.0%
GCATATGCATGAACCATGGA+TGG + chr3_1:53637836-53637855 Msa0362440:CDS 45.0%
GGCTGTTCTGCAAGTTTCTT+TGG + chr3_1:53637857-53637876 Msa0362440:CDS 45.0%
CAACATCACAACTACGGTAG+CGG - chr3_1:53637934-53637953 None:intergenic 45.0%
GATGTTGCTAAACCATCCCA+TGG + chr3_1:53637947-53637966 Msa0362440:CDS 45.0%
TTCTCTTGCAGTGATGCCAT+GGG - chr3_1:53637966-53637985 None:intergenic 45.0%
CTAAGCATCCCACTTGAATC+AGG + chr3_1:53638230-53638249 Msa0362440:CDS 45.0%
! TGATTTGCAGGCCAATGTAG+TGG + chr3_1:53638382-53638401 Msa0362440:CDS 45.0%
!! TGTATGAGGGTTGCTGTTTG+TGG + chr3_1:53638521-53638540 Msa0362440:CDS 45.0%
TCTGGGAACTTGAAGGTTTG+TGG + chr3_1:53638605-53638624 Msa0362440:CDS 45.0%
ATCTTGCCACTCTGTATCCA+CGG - chr3_1:53638656-53638675 None:intergenic 45.0%
GATACAGAGTGGCAAGATAG+AGG + chr3_1:53638658-53638677 Msa0362440:CDS 45.0%
CTCATTGAAGAAAGACCTCG+AGG + chr3_1:53638742-53638761 Msa0362440:CDS 45.0%
CACGAAATGGTAAAACCTCG+AGG - chr3_1:53638760-53638779 None:intergenic 45.0%
GTGAGCATCAACAGCACTAA+AGG - chr3_1:53638894-53638913 None:intergenic 45.0%
CACAGGATCCCATCTCTTTA+AGG + chr3_1:53638913-53638932 Msa0362440:CDS 45.0%
TTCGGCCTTAGGAACAAAGA+AGG - chr3_1:53639030-53639049 None:intergenic 45.0%
!! CTGTTTCAGGAGTGTTTGCT+TGG + chr3_1:53639421-53639440 Msa0362440:intron 45.0%
GCTTCCAATATCAGATTCCG+CGG - chr3_1:53640060-53640079 None:intergenic 45.0%
GTCTACCTTTCTTTGGCAGT+TGG + chr3_1:53640095-53640114 Msa0362440:CDS 45.0%
AAGAACTGCTCTAGCAAAGG+TGG - chr3_1:53640132-53640151 None:intergenic 45.0%
GTGGCATCAAAAAACGGCAT+TGG - chr3_1:53640224-53640243 None:intergenic 45.0%
CTTGGCGTGGCATCAAAAAA+CGG - chr3_1:53640230-53640249 None:intergenic 45.0%
!!! TTTTTTGATGCCACGCCAAG+TGG + chr3_1:53640230-53640249 Msa0362440:CDS 45.0%
AAGAATTCTTCCACTTGGCG+TGG - chr3_1:53640243-53640262 None:intergenic 45.0%
GTAAATCCCCATGCGACATT+TGG - chr3_1:53640670-53640689 None:intergenic 45.0%
CTGTGATGTCTCAAGTAGCA+TGG + chr3_1:53640722-53640741 Msa0362440:CDS 45.0%
TACTCTCCCCGTGTCATATT+AGG + chr3_1:53640797-53640816 Msa0362440:intron 45.0%
ACGACACCTAATATGACACG+GGG - chr3_1:53640806-53640825 None:intergenic 45.0%
AACTGGTGCTTGGCATATAC+CGG - chr3_1:53641134-53641153 None:intergenic 45.0%
! ACACTGCTAGTGTAGTGGAA+TGG + chr3_1:53641272-53641291 Msa0362440:CDS 45.0%
! CATTCCTTTCCAGGTATTGC+AGG + chr3_1:53641458-53641477 Msa0362440:intron 45.0%
ATACGAACCTCGCCAAATGA+TGG - chr3_1:53641653-53641672 None:intergenic 45.0%
ATTTGGCGAGGTTCGTATTC+AGG + chr3_1:53641655-53641674 Msa0362440:CDS 45.0%
CGTAAAACAAGAGGCAAGTG+GGG - chr3_1:53642039-53642058 None:intergenic 45.0%
GCGTAAAACAAGAGGCAAGT+GGG - chr3_1:53642040-53642059 None:intergenic 45.0%
TGCGTAAAACAAGAGGCAAG+TGG - chr3_1:53642041-53642060 None:intergenic 45.0%
GTGAGTCTGCGTAAAACAAG+AGG - chr3_1:53642048-53642067 None:intergenic 45.0%
ATTGTGGGAAGAACAGGAAG+TGG + chr3_1:53642099-53642118 Msa0362440:CDS 45.0%
!! AGACTTGTTGAACCTGTTGC+AGG + chr3_1:53642150-53642169 Msa0362440:CDS 45.0%
CAAACATCGTTGGATCCTGA+GGG - chr3_1:53642248-53642267 None:intergenic 45.0%
TCAAACATCGTTGGATCCTG+AGG - chr3_1:53642249-53642268 None:intergenic 45.0%
CAGGATCCAACGATGTTTGA+AGG + chr3_1:53642249-53642268 Msa0362440:CDS 45.0%
ACAGTCCCTTCAAACATCGT+TGG - chr3_1:53642258-53642277 None:intergenic 45.0%
TCATCTGTGTACTCTTCGAG+CGG - chr3_1:53642297-53642316 None:intergenic 45.0%
CACAGATGACAAGATTTGGG+AGG + chr3_1:53642308-53642327 Msa0362440:CDS 45.0%
!! GTCAACTTGGTGATGAAGTG+AGG + chr3_1:53642427-53642446 Msa0362440:CDS 45.0%
GTTCTGGCAGTTACTGAGAA+TGG + chr3_1:53642737-53642756 Msa0362440:intron 45.0%
TCTTAAGTAGAACACGTCCG+AGG - chr3_1:53642799-53642818 None:intergenic 45.0%
GCAACATTTCTCAGACTGCA+CGG + chr3_1:53642898-53642917 Msa0362440:CDS 45.0%
GATTCCTACAGGGCTTATTG+AGG + chr3_1:53643053-53643072 Msa0362440:intron 45.0%
TAGTTGCAGAGTACACAAGG+AGG + chr3_1:53643130-53643149 Msa0362440:CDS 45.0%
ACCATAATCCACGATTGTCG+TGG + chr3_1:53643386-53643405 Msa0362440:three_prime_UTR 45.0%
! ACCACGACAATCGTGGATTA+TGG - chr3_1:53643390-53643409 None:intergenic 45.0%
ACACAAAACCACGACAATCG+TGG - chr3_1:53643397-53643416 None:intergenic 45.0%
!!! ATACAAATTAATATATTTTA+TGG + chr3_1:53642381-53642400 Msa0362440:intron 5.0%
TGCACCTAGTGGTTGTGTCA+TGG + chr3_1:53636767-53636786 Msa0362440:five_prime_UTR 50.0%
!! ATTAGGGGAATGCATCGGCT+CGG - chr3_1:53637032-53637051 None:intergenic 50.0%
ACATCCAGTGCTTCTGCGAA+AGG - chr3_1:53637656-53637675 None:intergenic 50.0%
!! AGTTCCAACAGGTTGGTGTC+AGG + chr3_1:53637679-53637698 Msa0362440:CDS 50.0%
!! GTTCCAACAGGTTGGTGTCA+GGG + chr3_1:53637680-53637699 Msa0362440:CDS 50.0%
TCGAAAGAGGGATACAGCAG+CGG + chr3_1:53637759-53637778 Msa0362440:CDS 50.0%
ACTTGCAGAACAGCCATCCA+TGG - chr3_1:53637852-53637871 None:intergenic 50.0%
CTTCTCTTGCAGTGATGCCA+TGG - chr3_1:53637967-53637986 None:intergenic 50.0%
TGCTCCGACGTTTATTGCTG+TGG + chr3_1:53638184-53638203 Msa0362440:CDS 50.0%
TGGCAGCTTCTCCACTACAT+TGG - chr3_1:53638396-53638415 None:intergenic 50.0%
!! GAGGGTTGCTGTTTGTGGTA+CGG + chr3_1:53638526-53638545 Msa0362440:CDS 50.0%
!! GTTGCTGTTTGTGGTACGGT+TGG + chr3_1:53638530-53638549 Msa0362440:CDS 50.0%
GTTTGTGGTACGGTTGGATC+AGG + chr3_1:53638536-53638555 Msa0362440:CDS 50.0%
CTTACGTTGCTCAATCACCG+TGG + chr3_1:53638636-53638655 Msa0362440:CDS 50.0%
CAATCACCGTGGATACAGAG+TGG + chr3_1:53638647-53638666 Msa0362440:CDS 50.0%
! AGTGCTGTTGATGCTCACAC+AGG + chr3_1:53638896-53638915 Msa0362440:CDS 50.0%
GTTCCTAAGGCCGAATCGTT+CGG + chr3_1:53639035-53639054 Msa0362440:intron 50.0%
TTCCTAAGGCCGAATCGTTC+GGG + chr3_1:53639036-53639055 Msa0362440:intron 50.0%
CTTTACCCTCCAGTTCCCAA+GGG - chr3_1:53639129-53639148 None:intergenic 50.0%
ACTTTACCCTCCAGTTCCCA+AGG - chr3_1:53639130-53639149 None:intergenic 50.0%
GACGACACAGTTGAGCCAAA+AGG + chr3_1:53639852-53639871 Msa0362440:CDS 50.0%
AACAGGTTATGGAGGAGCTC+TGG + chr3_1:53639944-53639963 Msa0362440:CDS 50.0%
AACTCCTGTTTCAGCAACCG+CGG + chr3_1:53640040-53640059 Msa0362440:CDS 50.0%
GCAACCGCGGAATCTGATAT+TGG + chr3_1:53640053-53640072 Msa0362440:CDS 50.0%
TGCTCTAGCAAAGGTGGTAC+AGG - chr3_1:53640126-53640145 None:intergenic 50.0%
!! GGAGAGTACCTGGTACCATA+TGG - chr3_1:53640785-53640804 None:intergenic 50.0%
GATGAGCGCGTATGACTAGT+TGG - chr3_1:53641417-53641436 None:intergenic 50.0%
CAACCCTGCAATACCTGGAA+AGG - chr3_1:53641465-53641484 None:intergenic 50.0%
! CTTTCCAGGTATTGCAGGGT+TGG + chr3_1:53641463-53641482 Msa0362440:intron 50.0%
!! CAGGGTTGGCTGTGACATAT+GGG + chr3_1:53641477-53641496 Msa0362440:CDS 50.0%
AGGTGCTTCACTTGGGATAG+AGG - chr3_1:53641594-53641613 None:intergenic 50.0%
ACAGCCAGCCAGATCATTCT+TGG + chr3_1:53641627-53641646 Msa0362440:CDS 50.0%
ATGGCCAAGAATGATCTGGC+TGG - chr3_1:53641634-53641653 None:intergenic 50.0%
TTCTTGGCCATCATTTGGCG+AGG + chr3_1:53641643-53641662 Msa0362440:CDS 50.0%
! CTCACTTGCACTTTTGCTGC+TGG + chr3_1:53642063-53642082 Msa0362440:CDS 50.0%
TTTGCTGCTGGAGCGAAAAC+TGG + chr3_1:53642075-53642094 Msa0362440:CDS 50.0%
TGGAGCGAAAACTGGCATTG+TGG + chr3_1:53642083-53642102 Msa0362440:CDS 50.0%
GGAGCGAAAACTGGCATTGT+GGG + chr3_1:53642084-53642103 Msa0362440:CDS 50.0%
ACTGGCATTGTGGGAAGAAC+AGG + chr3_1:53642093-53642112 Msa0362440:CDS 50.0%
CATCTGTGTACTCTTCGAGC+GGG - chr3_1:53642296-53642315 None:intergenic 50.0%
!! AGAAGGAAAGCTTGACTCGG+CGG + chr3_1:53642455-53642474 Msa0362440:CDS 50.0%
! CAAAGACAGTTGGTCTGCCT+CGG + chr3_1:53642779-53642798 Msa0362440:CDS 50.0%
TTCAATCCTCGACAGCGACA+TGG + chr3_1:53642946-53642965 Msa0362440:CDS 50.0%
ACAAAACCATGTCGCTGTCG+AGG - chr3_1:53642955-53642974 None:intergenic 50.0%
TACACAAGGAGGTCAAGCAC+TGG + chr3_1:53643141-53643160 Msa0362440:CDS 50.0%
!!! AGGAGGTCAAGCACTGGTTT+TGG + chr3_1:53643147-53643166 Msa0362440:CDS 50.0%
!! TTAGGGGAATGCATCGGCTC+GGG - chr3_1:53637031-53637050 None:intergenic 55.0%
! AGTGCCTTTCGCAGAAGCAC+TGG + chr3_1:53637649-53637668 Msa0362440:CDS 55.0%
CTTGCAGTGATGCCATGGGA+TGG - chr3_1:53637962-53637981 None:intergenic 55.0%
GATTCCGCGGTTGCTGAAAC+AGG - chr3_1:53640047-53640066 None:intergenic 55.0%
CATATGGCAGCTGCCATGAC+AGG - chr3_1:53640769-53640788 None:intergenic 55.0%
CTGTCATGGCAGCTGCCATA+TGG + chr3_1:53640767-53640786 Msa0362440:CDS 55.0%
!! TATGACACGGGGAGAGTACC+TGG - chr3_1:53640795-53640814 None:intergenic 55.0%
ACAGCCAACCCTGCAATACC+TGG - chr3_1:53641470-53641489 None:intergenic 55.0%
!! GCAGGGTTGGCTGTGACATA+TGG + chr3_1:53641476-53641495 Msa0362440:CDS 55.0%
!! GAAGGAAAGCTTGACTCGGC+GGG + chr3_1:53642456-53642475 Msa0362440:CDS 55.0%
GAGCATGGGGCAAAGACAGT+TGG + chr3_1:53642769-53642788 Msa0362440:CDS 55.0%
GCACCCTGACACCAACCTGT+TGG - chr3_1:53637686-53637705 None:intergenic 60.0%
! GTAGTGGAGAAGCTGCCACG+AGG + chr3_1:53638398-53638417 Msa0362440:CDS 60.0%
! CTCCCGAACGATTCGGCCTT+AGG - chr3_1:53639041-53639060 None:intergenic 60.0%
ACGAGAGAGCTCCCTTCCCT+TGG + chr3_1:53639110-53639129 Msa0362440:intron 60.0%
CGAGAGAGCTCCCTTCCCTT+GGG + chr3_1:53639111-53639130 Msa0362440:intron 60.0%
AGCTCCCTTCCCTTGGGAAC+TGG + chr3_1:53639117-53639136 Msa0362440:intron 60.0%
TCCCTTCCCTTGGGAACTGG+AGG + chr3_1:53639120-53639139 Msa0362440:intron 60.0%
CCCTCCAGTTCCCAAGGGAA+GGG - chr3_1:53639124-53639143 None:intergenic 60.0%
CCCTTCCCTTGGGAACTGGA+GGG + chr3_1:53639121-53639140 Msa0362440:intron 60.0%
ACCCTCCAGTTCCCAAGGGA+AGG - chr3_1:53639125-53639144 None:intergenic 60.0%
GGCAGCTGCCATATGGTACC+AGG + chr3_1:53640774-53640793 Msa0362440:CDS 60.0%
TGTACTCTTCGAGCGGGTCG+AGG - chr3_1:53642290-53642309 None:intergenic 60.0%
!! GGGGAATGCATCGGCTCGGG+TGG - chr3_1:53637028-53637047 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 53636711 53643431 53636711 ID=Msa0362440;Name=Msa0362440
chr3_1 mRNA 53636711 53643431 53636711 ID=Msa0362440-mRNA-1;Parent=Msa0362440;Name=Msa0362440-mRNA-1;_AED=0.08;_eAED=0.08;_QI=125|1|1|1|0.9|0.81|11|255|1306
chr3_1 exon 53636711 53636797 53636711 ID=Msa0362440-mRNA-1:exon:9712;Parent=Msa0362440-mRNA-1
chr3_1 exon 53637112 53638934 53637112 ID=Msa0362440-mRNA-1:exon:9713;Parent=Msa0362440-mRNA-1
chr3_1 exon 53639430 53639516 53639430 ID=Msa0362440-mRNA-1:exon:9714;Parent=Msa0362440-mRNA-1
chr3_1 exon 53639618 53640268 53639618 ID=Msa0362440-mRNA-1:exon:9715;Parent=Msa0362440-mRNA-1
chr3_1 exon 53640631 53640795 53640631 ID=Msa0362440-mRNA-1:exon:9716;Parent=Msa0362440-mRNA-1
chr3_1 exon 53641091 53641385 53641091 ID=Msa0362440-mRNA-1:exon:9717;Parent=Msa0362440-mRNA-1
chr3_1 exon 53641471 53641685 53641471 ID=Msa0362440-mRNA-1:exon:9718;Parent=Msa0362440-mRNA-1
chr3_1 exon 53642024 53642329 53642024 ID=Msa0362440-mRNA-1:exon:9719;Parent=Msa0362440-mRNA-1
chr3_1 exon 53642414 53642477 53642414 ID=Msa0362440-mRNA-1:exon:9720;Parent=Msa0362440-mRNA-1
chr3_1 exon 53642747 53642986 53642747 ID=Msa0362440-mRNA-1:exon:9721;Parent=Msa0362440-mRNA-1
chr3_1 exon 53643064 53643431 53643064 ID=Msa0362440-mRNA-1:exon:9722;Parent=Msa0362440-mRNA-1
chr3_1 five_prime_UTR 53636711 53636797 53636711 ID=Msa0362440-mRNA-1:five_prime_utr;Parent=Msa0362440-mRNA-1
chr3_1 five_prime_UTR 53637112 53637149 53637112 ID=Msa0362440-mRNA-1:five_prime_utr;Parent=Msa0362440-mRNA-1
chr3_1 CDS 53637150 53638934 53637150 ID=Msa0362440-mRNA-1:cds;Parent=Msa0362440-mRNA-1
chr3_1 CDS 53639430 53639516 53639430 ID=Msa0362440-mRNA-1:cds;Parent=Msa0362440-mRNA-1
chr3_1 CDS 53639618 53640268 53639618 ID=Msa0362440-mRNA-1:cds;Parent=Msa0362440-mRNA-1
chr3_1 CDS 53640631 53640795 53640631 ID=Msa0362440-mRNA-1:cds;Parent=Msa0362440-mRNA-1
chr3_1 CDS 53641091 53641385 53641091 ID=Msa0362440-mRNA-1:cds;Parent=Msa0362440-mRNA-1
chr3_1 CDS 53641471 53641685 53641471 ID=Msa0362440-mRNA-1:cds;Parent=Msa0362440-mRNA-1
chr3_1 CDS 53642024 53642329 53642024 ID=Msa0362440-mRNA-1:cds;Parent=Msa0362440-mRNA-1
chr3_1 CDS 53642414 53642477 53642414 ID=Msa0362440-mRNA-1:cds;Parent=Msa0362440-mRNA-1
chr3_1 CDS 53642747 53642986 53642747 ID=Msa0362440-mRNA-1:cds;Parent=Msa0362440-mRNA-1
chr3_1 CDS 53643064 53643176 53643064 ID=Msa0362440-mRNA-1:cds;Parent=Msa0362440-mRNA-1
chr3_1 three_prime_UTR 53643177 53643431 53643177 ID=Msa0362440-mRNA-1:three_prime_utr;Parent=Msa0362440-mRNA-1
Gene Sequence

>Msa0362440

ATGACTAAACTTGCCCCTCTTGAAGAATCCCTTTTGAATGGTGAAGATAGCGTAAGCAACAACAATTCTGATTCCAAAAAGACACTAAGAAATGAAATTTCAACCAGTTATTCAAATGCTGGATTTTTCAGCATTCTTACATTCTCATGGATGACTCCACTAATAGCTTTAGGCAATCAAAAGACTTTAGATCATGAAGACCTTCCATTGCTTTCTACCAATGACAGTGCCAATGGAACTTTTTCAACTTTTAGAAACAAGCTTGAGTTGGAGTGTGGTAATGTTAGGAATGTGACCACAATTAACCTTGCCAAGGTCTTGTTCTTCTCGACATGGCAAAGAATTCTTATATCTGGCTTTTTTGCATTGCTGTACACATGTGCTTCTTATGTAGGACCCTACCTTATAGAGAATCTTGTTCAATACCTCAATGATGAAAACAAGGCTAAAAATGAAGGCTATATTTTGGCTATGATGTTTGTTGCGGCAAAGCATGTCGAGTGCCTTTCGCAGAAGCACTGGATGTTTAAGTTCCAACAGGTTGGTGTCAGGGTGCAATCAATGTTGGTGTCAATGATATATGCTAAAGGTTTGACCCTTTCGTGTCAATCGAAAGAGGGATACAGCAGCGGTGAAATCATCAACTTAATGACTGTTGATGCTGAAAGGATCGGTGAATTTTGTTGGCATATGCATGAACCATGGATGGCTGTTCTGCAAGTTTCTTTGGCTTTGTTTATTCTTCATAGAAGTGTAGGGGTTGCTTCAGTAGCTGCTTTAGCCGCTACCGTAGTTGTGATGTTGCTAAACCATCCCATGGCATCACTGCAAGAGAAGTTTCAAGGTAAGTTAATGGAATTCAAAGATAAAAGAATGAAGGCGACGTCTGAGATTCTAATGAACATGAGGATTCTTAAACTTCAAGCATGGGAGTTGAAGTTCTTATCAAAGGTTATTCATCTTAGGAAGTTAGAGGAGATGTGGCTAAAGAAATTTCTTGGCTGTACAGCAATTGTTAGATTTCTCTTCTTCAATGCTCCGACGTTTATTGCTGTGGTAACTTTCGGTTCATGTGTTCTTCTAAGCATCCCACTTGAATCAGGAAAGATCTTATCCGCTCTTGCAACATTCAGACTTCTTCAAATGCCTGTCTATAATCTTCCAGATACAATTTCAATGATTGCACAAACCAAGGTTTCTCTAGTTAGGATTGTCGCATTTCTTCGCTTAGATGATTTGCAGGCCAATGTAGTGGAGAAGCTGCCACGAGGTAATTCTGATATAGCAATTGAAATAGTAGATGGGAATTTCACTTGGGACTTATCTTCTGCCAATACAACATTGAAAAACATAAATCTTAGAGTTTTTCATTGTATGAGGGTTGCTGTTTGTGGTACGGTTGGATCAGGCAAGTCGAGTTTAATTTCTTGTATAATTGGTGAAATACCGAAGATATCTGGGAACTTGAAGGTTTGTGGAACAAAGGCTTACGTTGCTCAATCACCGTGGATACAGAGTGGCAAGATAGAGGATAATATACTATTTGGTAGAGAGATGGATAGGGATAAGTATGAGAAGGTTCTAGAAGCATGCTCATTGAAGAAAGACCTCGAGGTTTTACCATTTCGTGATCAGACCATTATTGGAGAGAAGGGAATCAATTTGAGTGGTGGACAGAAGCAAAGAGTACAAATCGCTCGTGCTCTTTACCAAGATGCTGATATATATCTTCTTGACGATCCCTTTAGTGCTGTTGATGCTCACACAGGATCCCATCTCTTTAAGGAGTGTTTGCTTGGCCTTTTGAAAACAAAAACAGTGATATATATAACACATCAAGTAGAGTTCTTACCTGATGCTGATCTGATACTTGTCATGAAAGAAGGAAGAATAACACAATCAGGAATATACAATGACATTCTTACGTCAGGAACCGATTTTATGGAACTTGTAGGCGCACATAGAGCAGCGTTGTCTTCAGTTAAGTCCTTAGAGAGAAGGAATACATTTCAAAAATCAAGTATTACCGGGGAAGACACAGTTTTATCAAGTGATTTTGAACTTGAGCAAGAAGTCGAAAACATAAACGATCAAAAAGGAAAGTTAGACGACACAGTTGAGCCAAAAGGACAACTTGTTCAAGATGAAGAACGAGAAAAGGGTAGAGTTGAGTTTAAAGTGTTCTGGAAATACATCACAACAGGTTATGGAGGAGCTCTGGTGCCTATTATATTTCTTTCACAAATACTCACTGTGGTTTTACAGATTGCAAGCAATTATTGGATGGCTTTGGCAACTCCTGTTTCAGCAACCGCGGAATCTGATATTGGAAGCCTTACTCTTATGGTTGTCTACCTTTCTTTGGCAGTTGGAATTTCCTGTACCACCTTTGCTAGAGCAGTTCTTGTTGTAATAGCTGGATACAAAGCCTCCACAATGCTCTTCAATCAAATGCATTTGAGCTTTATTCGAGCACCAATGCCGTTTTTTGATGCCACGCCAAGTGGAAGAATTCTTAATAGAGCTTCAACAGACCAAAGTGCAATAGATATGAGTATTCCAAATGTCGCATGGGGATTTACCTACAGTATTGTTCAGCTCTTAGGAACTGTTGCTGTGATGTCTCAAGTAGCATGGCAGCTGTTGATAGTATTGATTCCTGTCATGGCAGCTGCCATATGGTACCAGCGATACTACTCTTCATCAGCACGTGAGTTATCACGATTAACCGGTATATGCCAAGCACCAGTTATACAACATTTTTCTGAAACAATTTCTGGATCAACAACTATAAGAAGTTTTGAGCAAGAATCAAGATTTCATGAAATGAATATGCAATTGATAGACAAATATTCGCAACCTAAATTATACACTGCTAGTGTAGTGGAATGGCTTAGTTTCAGATTGGATCTTTTATCCTCTACATTATTTGCCTTCTACTTGGTTTTCTTGGTATCTTTCCCAAGTTCAATTGCTGATCCTAGTATTGCAGGGTTGGCTGTGACATATGGGATTAACCTAAATGCTGTACAATCTAACTTAATTTCGTATCTTTGCAATTTGGAGAACAAAATTATATCTGTAGAAAGAATACTTCAGTACACCTCTATCCCAAGTGAAGCACCTCTTGTAATAAAAGACAGCCAGCCAGATCATTCTTGGCCATCATTTGGCGAGGTTCGTATTCAGGATTTACAGGTTCGATATGCTCCCCACTTGCCTCTTGTTTTACGCAGACTCACTTGCACTTTTGCTGCTGGAGCGAAAACTGGCATTGTGGGAAGAACAGGAAGTGGAAAAACAACACTAGTGCAAGCACTTTTCAGACTTGTTGAACCTGTTGCAGGACAAATATTAATAGATAACATCAACATCTCATTGATTGGAATTCATGATTTGCGGTCCAAACTAAGCATAATCCCTCAGGATCCAACGATGTTTGAAGGGACTGTAAGAAGTAACCTCGACCCGCTCGAAGAGTACACAGATGACAAGATTTGGGAGGCTCTAGATATGTGTCAACTTGGTGATGAAGTGAGGAAGAAAGAAGGAAAGCTTGACTCGGCGGTTACTGAGAATGGAGAAAATTGGAGCATGGGGCAAAGACAGTTGGTCTGCCTCGGACGTGTTCTACTTAAGAAAAGCAAGATCTTGGTGCTCGATGAAGCAACTGCATCAGTTGATACAGCTACCGATAATATTATTCAGCAAACAGTTAAGCAACATTTCTCAGACTGCACGGTCATTACCATTGCTCATAGAATCACTTCAATCCTCGACAGCGACATGGTTTTGTTTCTCAGTGAAGGGCTTATTGAGGAATATGATTCACCAAAGAAGTTGCTTAAGGACAAATCCTCATCTCTTGCTCAACTAGTTGCAGAGTACACAAGGAGGTCAAGCACTGGTTTTGGAAGTTGA
Protein sequence

>Msa0362440

MTKLAPLEESLLNGEDSVSNNNSDSKKTLRNEISTSYSNAGFFSILTFSWMTPLIALGNQKTLDHEDLPLLSTNDSANGTFSTFRNKLELECGNVRNVTTINLAKVLFFSTWQRILISGFFALLYTCASYVGPYLIENLVQYLNDENKAKNEGYILAMMFVAAKHVECLSQKHWMFKFQQVGVRVQSMLVSMIYAKGLTLSCQSKEGYSSGEIINLMTVDAERIGEFCWHMHEPWMAVLQVSLALFILHRSVGVASVAALAATVVVMLLNHPMASLQEKFQGKLMEFKDKRMKATSEILMNMRILKLQAWELKFLSKVIHLRKLEEMWLKKFLGCTAIVRFLFFNAPTFIAVVTFGSCVLLSIPLESGKILSALATFRLLQMPVYNLPDTISMIAQTKVSLVRIVAFLRLDDLQANVVEKLPRGNSDIAIEIVDGNFTWDLSSANTTLKNINLRVFHCMRVAVCGTVGSGKSSLISCIIGEIPKISGNLKVCGTKAYVAQSPWIQSGKIEDNILFGREMDRDKYEKVLEACSLKKDLEVLPFRDQTIIGEKGINLSGGQKQRVQIARALYQDADIYLLDDPFSAVDAHTGSHLFKECLLGLLKTKTVIYITHQVEFLPDADLILVMKEGRITQSGIYNDILTSGTDFMELVGAHRAALSSVKSLERRNTFQKSSITGEDTVLSSDFELEQEVENINDQKGKLDDTVEPKGQLVQDEEREKGRVEFKVFWKYITTGYGGALVPIIFLSQILTVVLQIASNYWMALATPVSATAESDIGSLTLMVVYLSLAVGISCTTFARAVLVVIAGYKASTMLFNQMHLSFIRAPMPFFDATPSGRILNRASTDQSAIDMSIPNVAWGFTYSIVQLLGTVAVMSQVAWQLLIVLIPVMAAAIWYQRYYSSSARELSRLTGICQAPVIQHFSETISGSTTIRSFEQESRFHEMNMQLIDKYSQPKLYTASVVEWLSFRLDLLSSTLFAFYLVFLVSFPSSIADPSIAGLAVTYGINLNAVQSNLISYLCNLENKIISVERILQYTSIPSEAPLVIKDSQPDHSWPSFGEVRIQDLQVRYAPHLPLVLRRLTCTFAAGAKTGIVGRTGSGKTTLVQALFRLVEPVAGQILIDNINISLIGIHDLRSKLSIIPQDPTMFEGTVRSNLDPLEEYTDDKIWEALDMCQLGDEVRKKEGKLDSAVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKQHFSDCTVITIAHRITSILDSDMVLFLSEGLIEEYDSPKKLLKDKSSSLAQLVAEYTRRSSTGFGS*