AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1015020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1015020 MtrunA17_Chr7g0228161 94.040 302 14 2 1 299 42 342 0.0 584
Msa1015020 MtrunA17_Chr6g0470371 85.965 114 12 2 1 111 1 113 9.76e-65 199
Msa1015020 MtrunA17_Chr6g0470341 93.103 87 6 0 213 299 12 98 7.79e-55 173
Msa1015020 MtrunA17_Chr6g0470361 98.000 50 1 0 167 216 1 50 1.26e-28 104
Msa1015020 MtrunA17_Chr4g0029211 30.357 224 128 9 68 285 22 223 8.04e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1015020 AT3G01920.1 64.875 279 92 2 10 288 25 297 7.91e-134 382
Msa1015020 AT3G01920.2 59.150 306 92 3 10 288 25 324 2.15e-127 366

Find 98 sgRNAs with CRISPR-Local

Find 435 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATACCTTGTACATATTAA+TGG 0.203028 7_1:+26071728 None:intergenic
ATAATGTCATTAACTGGTTT+TGG 0.218311 7_1:+26069198 None:intergenic
CGAAAAGCCATGGAGGTTTA+TGG 0.252156 7_1:+26074993 None:intergenic
AATACCATCCAGTCTGAAAT+TGG 0.281224 7_1:+26069310 None:intergenic
ACAGTACACGTTCATCTTAA+TGG 0.283468 7_1:-26071882 Msa1015020:intron
TGGTTCTGACTCATGGAAAT+TGG 0.296845 7_1:-26074739 Msa1015020:CDS
AAACCAGTTAATGACATTAT+AGG 0.325988 7_1:-26069195 Msa1015020:three_prime_UTR
CCAAACCTTATGCACTGTTT+TGG 0.334771 7_1:+26071845 None:intergenic
CTTTCCTTCCCGTAGGACTC+TGG 0.335338 7_1:+26070191 None:intergenic
TATGTATCAGCTATCATAAC+TGG 0.344189 7_1:+26070705 None:intergenic
TATACTTCATAAGGGCTATC+TGG 0.344279 7_1:-26069079 Msa1015020:three_prime_UTR
CTGTGTATTTGAGACGCTTT+GGG 0.344518 7_1:+26074897 None:intergenic
CCAAAACAGTGCATAAGGTT+TGG 0.352337 7_1:-26071845 Msa1015020:CDS
GAAGAGAATTTAGTGGTAAA+GGG 0.352768 7_1:+26075117 None:intergenic
TCATCCATTCGTCTTCGTTC+AGG 0.356427 7_1:+26070733 None:intergenic
CAATGGCTGAGTTGTTTGTT+AGG 0.362631 7_1:+26073487 None:intergenic
TCTGTGTATTTGAGACGCTT+TGG 0.364526 7_1:+26074896 None:intergenic
TAGGACTCTGGGAGGCAATT+TGG 0.383853 7_1:+26070203 None:intergenic
CCATTATCATCGTTTAGAAA+TGG 0.383923 7_1:-26075038 Msa1015020:intron
AGAAGAGAATTTAGTGGTAA+AGG 0.385401 7_1:+26075116 None:intergenic
GACATAGATAAGTACACATC+TGG 0.385667 7_1:-26073089 Msa1015020:CDS
TGTCCTATAATGTCATTAAC+TGG 0.393907 7_1:+26069192 None:intergenic
ATGCTGAATCTTCATTCAAA+AGG 0.394945 7_1:+26069221 None:intergenic
AGATAGCCCTTATGAAGTAT+AGG 0.395073 7_1:+26069081 None:intergenic
CAAAACAGTGCATAAGGTTT+GGG 0.400628 7_1:-26071844 Msa1015020:CDS
TATATTACAGGATGGTGGTT+TGG 0.403125 7_1:-26074784 Msa1015020:intron
AATTTCAGACTGGATGGTAT+TGG 0.403596 7_1:-26069308 Msa1015020:CDS
AAATTCTCTTCTGCATTGTT+CGG 0.413196 7_1:-26075105 Msa1015020:five_prime_UTR
GATAGCCCTTATGAAGTATA+GGG 0.415593 7_1:+26069082 None:intergenic
CTACTACTCCTCGGGATTTG+TGG 0.416279 7_1:+26074942 None:intergenic
CTTTAGTATTGCTTGACAAA+TGG 0.419936 7_1:+26071763 None:intergenic
AGATCTTGTAGAACAACTTA+AGG 0.424285 7_1:+26068977 None:intergenic
CATTACCAAAACAGTGCATA+AGG 0.430230 7_1:-26071850 Msa1015020:CDS
CAGATGCCCTATACTTCATA+AGG 0.431173 7_1:-26069088 Msa1015020:three_prime_UTR
GCTGTTAAGCATTGCTTACC+TGG 0.431238 7_1:-26073023 Msa1015020:CDS
CCTCGGGATTTGTGGCTTCG+TGG 0.442811 7_1:+26074950 None:intergenic
TACATTGAAGCTGACCCATC+TGG 0.446109 7_1:-26074759 Msa1015020:CDS
ACCCATCTGGTTCTGACTCA+TGG 0.449809 7_1:-26074746 Msa1015020:CDS
CTTATGAAGTATAGGGCATC+TGG 0.452688 7_1:+26069089 None:intergenic
TCATCGTTTAGAAATGGAAA+TGG 0.462571 7_1:-26075032 Msa1015020:exon
GTTATGATAGCTGATACATA+TGG 0.475070 7_1:-26070702 Msa1015020:CDS
CTGCATTGTTCGGTGCTACA+AGG 0.483295 7_1:-26075095 Msa1015020:five_prime_UTR
AAGGGTGATTAACATTCAAA+TGG 0.488049 7_1:+26069240 None:intergenic
TTTCCTTCCCGTAGGACTCT+GGG 0.494877 7_1:+26070192 None:intergenic
CATTGATACTACTACTCCTC+GGG 0.495623 7_1:+26074934 None:intergenic
GCTTGACAAATGGCATCGTC+AGG 0.502742 7_1:+26071773 None:intergenic
ATTAACATTCAAATGGCAGC+AGG 0.507067 7_1:+26069247 None:intergenic
ATACCTACGTAGCCGTTCAA+TGG 0.519401 7_1:+26073470 None:intergenic
GAAATGGCAGCTTGTATTTG+TGG 0.522512 7_1:-26075016 Msa1015020:CDS
CAGCTTTGAATAAATTTGCA+TGG 0.524320 7_1:+26073042 None:intergenic
TGCTGAATCTTCATTCAAAA+GGG 0.528272 7_1:+26069222 None:intergenic
CCGAGGAGTAGTAGTATCAA+TGG 0.529514 7_1:-26074933 Msa1015020:CDS
TCTGGGTTTCCGTGTGGTGA+TGG 0.529851 7_1:-26073071 Msa1015020:CDS
TTCAGGGTCCAATTTCAGAC+TGG 0.535241 7_1:-26069318 Msa1015020:intron
ATTGCCTCCCAGAGTCCTAC+GGG 0.536870 7_1:-26070199 Msa1015020:CDS
AGATGCCCTATACTTCATAA+GGG 0.544843 7_1:-26069087 Msa1015020:three_prime_UTR
AATTGCCTCCCAGAGTCCTA+CGG 0.550070 7_1:-26070200 Msa1015020:CDS
CAAGAATATAGACGGTTCAA+AGG 0.550560 7_1:-26073356 Msa1015020:intron
GAAGATAATCAGCAAACTGA+TGG 0.553611 7_1:-26069286 Msa1015020:CDS
CAATGCAGAAGAGAATTTAG+TGG 0.554490 7_1:+26075110 None:intergenic
CCATTGATACTACTACTCCT+CGG 0.566069 7_1:+26074933 None:intergenic
AAATGGCATCGTCAGGCATA+CGG 0.567821 7_1:+26071780 None:intergenic
GGGTCCAATTTCAGACTGGA+TGG 0.571381 7_1:-26069314 Msa1015020:CDS
CAGAGTCCTACGGGAAGGAA+AGG 0.573248 7_1:-26070190 Msa1015020:intron
GCACTGACAGTGTATCAGTA+GGG 0.584797 7_1:+26074673 None:intergenic
TTCCATGAGTCAGAACCAGA+TGG 0.586697 7_1:+26074744 None:intergenic
TCAGCAAACTGATGGTGAAG+AGG 0.588222 7_1:-26069278 Msa1015020:CDS
AATATTATATTACAGGATGG+TGG 0.590435 7_1:-26074789 Msa1015020:intron
CAAACAACTCAGCCATTGAA+CGG 0.593103 7_1:-26073482 Msa1015020:CDS
GAGAGAATACTTACAGGACC+AGG 0.598595 7_1:+26073005 None:intergenic
TTTCCGTGTGGTGATGGTCA+AGG 0.602525 7_1:-26073065 Msa1015020:CDS
AGTTCCTGAACGAAGACGAA+TGG 0.605092 7_1:-26070737 Msa1015020:CDS
CATTTGTCAAGCAATACTAA+AGG 0.605552 7_1:-26071762 Msa1015020:CDS
TTTGTGGCCATAAACCTCCA+TGG 0.611979 7_1:-26075000 Msa1015020:CDS
TGTTGATGGTGGTGTAAGAG+TGG 0.616961 7_1:-26070253 Msa1015020:CDS
GAGAAAGCGTCGAAAAGCCA+TGG 0.618735 7_1:+26074983 None:intergenic
TACAGAATCAAGAATATAGA+CGG 0.622409 7_1:-26073364 Msa1015020:intron
TCCATGAGTCAGAACCAGAT+GGG 0.626499 7_1:+26074745 None:intergenic
TAACTACCTTTCCTTCCCGT+AGG 0.630895 7_1:+26070184 None:intergenic
AGCACTGACAGTGTATCAGT+AGG 0.631912 7_1:+26074672 None:intergenic
TATCTATGTCGCTAAATGAG+TGG 0.640128 7_1:+26073102 None:intergenic
AGCTGATACATATGGACCAG+AGG 0.644000 7_1:-26070694 Msa1015020:intron
CTGCTGCCAAATATGCATCA+CGG 0.644154 7_1:-26071817 Msa1015020:CDS
CAGCCATTGAACGGCTACGT+AGG 0.644701 7_1:-26073473 Msa1015020:intron
ACATAGATAAGTACACATCT+GGG 0.647148 7_1:-26073088 Msa1015020:CDS
TGGCCTTGACCATCACCACA+CGG 0.655857 7_1:+26073062 None:intergenic
GTACACCATTAATATGTACA+AGG 0.663930 7_1:-26071733 Msa1015020:intron
AGATAATAATCGCTTCAACA+AGG 0.670237 7_1:-26074876 Msa1015020:intron
TACACATCTGGGTTTCCGTG+TGG 0.674433 7_1:-26073077 Msa1015020:CDS
GACATTATAGGACACACAGG+TGG 0.682362 7_1:-26069183 Msa1015020:three_prime_UTR
TTAACATTCAAATGGCAGCA+GGG 0.683879 7_1:+26069248 None:intergenic
CCACGAAGCCACAAATCCCG+AGG 0.692006 7_1:-26074950 Msa1015020:CDS
AATGACATTATAGGACACAC+AGG 0.692829 7_1:-26069186 Msa1015020:three_prime_UTR
AAAGCGTCGAAAAGCCATGG+AGG 0.697341 7_1:+26074986 None:intergenic
TTTGGTCATGTCAACCACAG+TGG 0.703360 7_1:+26070221 None:intergenic
GAGTGGCATATGATGCTAAG+CGG 0.715867 7_1:+26073119 None:intergenic
CCTTCCCGTAGGACTCTGGG+AGG 0.724104 7_1:+26070195 None:intergenic
AGTGGCTCAGTCGTCCACTG+TGG 0.724666 7_1:-26070235 Msa1015020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTCAAAAATACTAT+GGG - chr7_1:26071413-26071432 Msa1015020:intron 10.0%
!!! TATTTTATAATTATTTACAC+TGG + chr7_1:26073435-26073454 None:intergenic 10.0%
!! CAACTTGTATTTAAATATTA+CGG + chr7_1:26069992-26070011 None:intergenic 15.0%
!! TCATAAATAAATGGATAATA+TGG + chr7_1:26070469-26070488 None:intergenic 15.0%
!! TAAATAAAACGTAAAGTAAT+TGG + chr7_1:26070827-26070846 None:intergenic 15.0%
!!! GTATTTTTGAATTTTTTCTT+TGG + chr7_1:26071410-26071429 None:intergenic 15.0%
!! GAAAAAATTCAAAAATACTA+TGG - chr7_1:26071412-26071431 Msa1015020:intron 15.0%
!!! TTTTTATATGTGTTAGAAAT+AGG - chr7_1:26073510-26073529 Msa1015020:intron 15.0%
!!! AATAAATTAGCAAACTTTTT+TGG + chr7_1:26073719-26073738 None:intergenic 15.0%
!!! TTTTTTTTTATCAGAGGTAT+GGG - chr7_1:26069698-26069717 Msa1015020:intron 20.0%
!!! TCATTTTCTCAACTTATTAT+CGG + chr7_1:26069730-26069749 None:intergenic 20.0%
!! ATCATTCACTGATAATAAAA+AGG - chr7_1:26070028-26070047 Msa1015020:intron 20.0%
!!! AGAAATTATGTTAGTTTTCA+GGG + chr7_1:26071366-26071385 None:intergenic 20.0%
!!! TAGAAATTATGTTAGTTTTC+AGG + chr7_1:26071367-26071386 None:intergenic 20.0%
!! CTAACAACATAGTAATTATT+CGG + chr7_1:26071554-26071573 None:intergenic 20.0%
!! TGAAAAATTAAAGAAAACAG+AGG + chr7_1:26071828-26071847 None:intergenic 20.0%
!!! GATTTAGAATTTATGTTTAG+TGG - chr7_1:26071864-26071883 Msa1015020:CDS 20.0%
!! TATGTTATTAATCTCGAAAA+GGG + chr7_1:26071975-26071994 None:intergenic 20.0%
!! ATATGTTATTAATCTCGAAA+AGG + chr7_1:26071976-26071995 None:intergenic 20.0%
!!! TAAATTGGTAACAAAACAAT+AGG + chr7_1:26072108-26072127 None:intergenic 20.0%
!! GCAGATATTTAAAAATGAAA+TGG - chr7_1:26072521-26072540 Msa1015020:intron 20.0%
!! AGCTTAACTTAATATTATCT+TGG + chr7_1:26072573-26072592 None:intergenic 20.0%
!! ACAACATAAAAATGATACAA+GGG + chr7_1:26072762-26072781 None:intergenic 20.0%
!! AACAACATAAAAATGATACA+AGG + chr7_1:26072763-26072782 None:intergenic 20.0%
!! ATCAAATATATATCGACATA+CGG - chr7_1:26072802-26072821 Msa1015020:intron 20.0%
!!! ATAGACAATTCTTACAATTT+TGG + chr7_1:26073162-26073181 None:intergenic 20.0%
!! TATAACCTTTAATGTCATTA+GGG - chr7_1:26073207-26073226 Msa1015020:intron 20.0%
!! TGAACAATTATGGAAAATAA+GGG + chr7_1:26073240-26073259 None:intergenic 20.0%
!! CTGTAAAAAAAACAAGAAAT+AGG - chr7_1:26073533-26073552 Msa1015020:intron 20.0%
!!! TCTCTACTAATAAGTTTTAT+AGG - chr7_1:26073743-26073762 Msa1015020:intron 20.0%
!! AGATATTAAAACCATTACTT+TGG - chr7_1:26073775-26073794 Msa1015020:intron 20.0%
!! AGAACTTGAAATTTATGAAT+GGG + chr7_1:26074039-26074058 None:intergenic 20.0%
!! AAGAACTTGAAATTTATGAA+TGG + chr7_1:26074040-26074059 None:intergenic 20.0%
!!! TCATCAAAATGAAATTGTTT+TGG - chr7_1:26074070-26074089 Msa1015020:intron 20.0%
!!! CATCAAAATGAAATTGTTTT+GGG - chr7_1:26074071-26074090 Msa1015020:intron 20.0%
!! CATTGAATAATTAATATAGC+TGG - chr7_1:26074149-26074168 Msa1015020:intron 20.0%
!! CATGAATTATATTTGAACAT+AGG + chr7_1:26074692-26074711 None:intergenic 20.0%
!!! AATTGAGTTGAAAGTGTAAA+GGG + chr7_1:26069254-26069273 None:intergenic 25.0%
! CTGAACCAATATTATATTAC+AGG - chr7_1:26069277-26069296 Msa1015020:CDS 25.0%
! ACCAATATTATATTACAGGA+TGG - chr7_1:26069281-26069300 Msa1015020:CDS 25.0%
! ACCATCCTGTAATATAATAT+TGG + chr7_1:26069285-26069304 None:intergenic 25.0%
! AATATTATATTACAGGATGG+TGG - chr7_1:26069284-26069303 Msa1015020:CDS 25.0%
!! GTTGTTAATCTTTTCAAACA+AGG - chr7_1:26069362-26069381 Msa1015020:intron 25.0%
! AAATTTCAAGCAAGAAAAGA+AGG + chr7_1:26069452-26069471 None:intergenic 25.0%
!!! GTTTTTTTTTATCAGAGGTA+TGG - chr7_1:26069697-26069716 Msa1015020:intron 25.0%
!! GAATGTTTGTTAATGAAGTT+CGG + chr7_1:26070095-26070114 None:intergenic 25.0%
! ATTAACAAACATTCTGTGTT+GGG - chr7_1:26070101-26070120 Msa1015020:intron 25.0%
!! GTTTCTTTAATCTTTTCTAC+CGG - chr7_1:26070228-26070247 Msa1015020:CDS 25.0%
!! TTTCTTTAATCTTTTCTACC+GGG - chr7_1:26070229-26070248 Msa1015020:CDS 25.0%
! AATGGATAATATGGAGTTAA+CGG + chr7_1:26070460-26070479 None:intergenic 25.0%
! TACAGAATCAAGAATATAGA+CGG - chr7_1:26070709-26070728 Msa1015020:CDS 25.0%
!! GTGAGCATATTAATGATTTT+TGG - chr7_1:26071111-26071130 Msa1015020:intron 25.0%
!!! AGCATATTAATGATTTTTGG+TGG - chr7_1:26071114-26071133 Msa1015020:intron 25.0%
!!! ATATTAATGATTTTTGGTGG+AGG - chr7_1:26071117-26071136 Msa1015020:intron 25.0%
!!! TATTAATGATTTTTGGTGGA+GGG - chr7_1:26071118-26071137 Msa1015020:intron 25.0%
!! CATTAGTACTTAGCAATTTT+TGG + chr7_1:26071316-26071335 None:intergenic 25.0%
! ATGTTATTAATCTCGAAAAG+GGG + chr7_1:26071974-26071993 None:intergenic 25.0%
! AGTCATTCTTATTCATCAAT+TGG - chr7_1:26072010-26072029 Msa1015020:intron 25.0%
! ATATTGCAAATTGCAGTAAA+TGG + chr7_1:26072064-26072083 None:intergenic 25.0%
! ACATACCTTGTACATATTAA+TGG + chr7_1:26072348-26072367 None:intergenic 25.0%
!!! ACAAGGTATGTTTAATTTGT+TGG - chr7_1:26072357-26072376 Msa1015020:intron 25.0%
!! AAAAACACATCACTTTGAAA+TGG - chr7_1:26072462-26072481 Msa1015020:intron 25.0%
! CAACATAAAAATGATACAAG+GGG + chr7_1:26072761-26072780 None:intergenic 25.0%
!!! ACAATTCTTACAATTTTGGT+TGG + chr7_1:26073158-26073177 None:intergenic 25.0%
! CTAATGACATTAAAGGTTAT+AGG + chr7_1:26073208-26073227 None:intergenic 25.0%
! CTATAACCTTTAATGTCATT+AGG - chr7_1:26073206-26073225 Msa1015020:intron 25.0%
! GTGAACAATTATGGAAAATA+AGG + chr7_1:26073241-26073260 None:intergenic 25.0%
! AAAATTCCAAGGTAAGATTT+AGG + chr7_1:26073296-26073315 None:intergenic 25.0%
! CATAAAGAAGAAAAATTCCA+AGG + chr7_1:26073307-26073326 None:intergenic 25.0%
! AAATAACCATGCAATAGAAA+CGG + chr7_1:26073410-26073429 None:intergenic 25.0%
!!! ACATATTTTCCCTTTTGTTT+GGG + chr7_1:26073476-26073495 None:intergenic 25.0%
! TGTAACTGGAAAATTCTTAT+CGG + chr7_1:26073607-26073626 None:intergenic 25.0%
! CTATTTATCACAAATCTACT+TGG - chr7_1:26073674-26073693 Msa1015020:intron 25.0%
!!! ATTAGCAAACTTTTTTGGTT+CGG + chr7_1:26073714-26073733 None:intergenic 25.0%
! TGTTCAATGAATCTAAAAAG+TGG - chr7_1:26074206-26074225 Msa1015020:intron 25.0%
!!! AATAAAGTATTGATCACATC+TGG + chr7_1:26074246-26074265 None:intergenic 25.0%
! ACTTATACAACGAGATATTT+GGG - chr7_1:26074392-26074411 Msa1015020:intron 25.0%
! ACATTATGGAAATCAATTGT+GGG + chr7_1:26074553-26074572 None:intergenic 25.0%
! AACATTATGGAAATCAATTG+TGG + chr7_1:26074554-26074573 None:intergenic 25.0%
! TACAAAACATTGCAACATTA+TGG + chr7_1:26074567-26074586 None:intergenic 25.0%
!!! ATAATGTCATTAACTGGTTT+TGG + chr7_1:26074878-26074897 None:intergenic 25.0%
! AAACCAGTTAATGACATTAT+AGG - chr7_1:26074878-26074897 Msa1015020:CDS 25.0%
GAAGAGAATTTAGTGGTAAA+GGG + chr7_1:26068959-26068978 None:intergenic 30.0%
AGAAGAGAATTTAGTGGTAA+AGG + chr7_1:26068960-26068979 None:intergenic 30.0%
AAATTCTCTTCTGCATTGTT+CGG - chr7_1:26068968-26068987 Msa1015020:three_prime_UTR 30.0%
CCATTTCTAAACGATGATAA+TGG + chr7_1:26069038-26069057 None:intergenic 30.0%
CCATTATCATCGTTTAGAAA+TGG - chr7_1:26069035-26069054 Msa1015020:three_prime_UTR 30.0%
TCATCGTTTAGAAATGGAAA+TGG - chr7_1:26069041-26069060 Msa1015020:three_prime_UTR 30.0%
AGATAATAATCGCTTCAACA+AGG - chr7_1:26069197-26069216 Msa1015020:three_prime_UTR 30.0%
!! GAATTGAGTTGAAAGTGTAA+AGG + chr7_1:26069255-26069274 None:intergenic 30.0%
GACTAAAATGACAGTTTACT+TGG + chr7_1:26069546-26069565 None:intergenic 30.0%
TTCAACGTAATCACATTTGT+CGG - chr7_1:26069651-26069670 Msa1015020:intron 30.0%
!!! GACTCGTTTTTTTTTATCAG+AGG - chr7_1:26069692-26069711 Msa1015020:intron 30.0%
TAAATAAAATGTGTCAGTGC+TGG - chr7_1:26069765-26069784 Msa1015020:intron 30.0%
TAATGCATCTTTGTTGAGTA+TGG - chr7_1:26069898-26069917 Msa1015020:intron 30.0%
CATTAACAAACATTCTGTGT+TGG - chr7_1:26070100-26070119 Msa1015020:intron 30.0%
CCTACTTGCTCATAAATAAA+TGG + chr7_1:26070478-26070497 None:intergenic 30.0%
CCATTTATTTATGAGCAAGT+AGG - chr7_1:26070475-26070494 Msa1015020:intron 30.0%
! GTTGAAGTCATTGATGATTA+TGG - chr7_1:26070913-26070932 Msa1015020:intron 30.0%
ACATAGATAAGTACACATCT+GGG - chr7_1:26070985-26071004 Msa1015020:intron 30.0%
!! CAGCTTTGAATAAATTTGCA+TGG + chr7_1:26071034-26071053 None:intergenic 30.0%
!! ACTTTTGAGAGAATACTTAC+AGG + chr7_1:26071077-26071096 None:intergenic 30.0%
ATCTAACAACTTCGATGTAA+AGG + chr7_1:26071466-26071485 None:intergenic 30.0%
!! TTTTGTGCTAACTGATTTAG+TGG - chr7_1:26071632-26071651 Msa1015020:intron 30.0%
TGCAATATCATGTCTTTATG+TGG - chr7_1:26072076-26072095 Msa1015020:intron 30.0%
GCAATATCATGTCTTTATGT+GGG - chr7_1:26072077-26072096 Msa1015020:intron 30.0%
ATACAGCATGAACACTAAAT+TGG + chr7_1:26072123-26072142 None:intergenic 30.0%
! ATTTTTCCGTGATGCATATT+TGG + chr7_1:26072265-26072284 None:intergenic 30.0%
CTTTAGTATTGCTTGACAAA+TGG + chr7_1:26072313-26072332 None:intergenic 30.0%
CATTTGTCAAGCAATACTAA+AGG - chr7_1:26072311-26072330 Msa1015020:intron 30.0%
GTACACCATTAATATGTACA+AGG - chr7_1:26072340-26072359 Msa1015020:intron 30.0%
!!! TGTTGGATCATTTTTTGTCT+TGG - chr7_1:26072374-26072393 Msa1015020:intron 30.0%
ATTCAGTAACCTTGTACATT+AGG - chr7_1:26072411-26072430 Msa1015020:intron 30.0%
! TCAAAGTGATGTGTTTTTCA+GGG + chr7_1:26072460-26072479 None:intergenic 30.0%
! TTCAAAGTGATGTGTTTTTC+AGG + chr7_1:26072461-26072480 None:intergenic 30.0%
! TTTGAAATGGCAAGATAAGA+TGG - chr7_1:26072475-26072494 Msa1015020:intron 30.0%
AAATATCTGCATCACTTCAT+TGG + chr7_1:26072511-26072530 None:intergenic 30.0%
CTAAATGAGGGTAAATAAGT+TGG - chr7_1:26072912-26072931 Msa1015020:intron 30.0%
CAGGTATACTGAAAAGAAAT+TGG + chr7_1:26073185-26073204 None:intergenic 30.0%
CATACTCTTGTGAACAATTA+TGG + chr7_1:26073250-26073269 None:intergenic 30.0%
CATAATTGTTCACAAGAGTA+TGG - chr7_1:26073248-26073267 Msa1015020:intron 30.0%
TATGTATCAGCTATCATAAC+TGG + chr7_1:26073371-26073390 None:intergenic 30.0%
GTTATGATAGCTGATACATA+TGG - chr7_1:26073371-26073390 Msa1015020:intron 30.0%
! CACATATTTTCCCTTTTGTT+TGG + chr7_1:26073477-26073496 None:intergenic 30.0%
AATAGGAAATTTCATGTTCG+CGG - chr7_1:26073550-26073569 Msa1015020:intron 30.0%
CTTCATGTGTAAAATGTAAC+TGG + chr7_1:26073621-26073640 None:intergenic 30.0%
!!! AACCATTACTTTGGTTTTTC+AGG - chr7_1:26073784-26073803 Msa1015020:intron 30.0%
!!! ACCATTACTTTGGTTTTTCA+GGG - chr7_1:26073785-26073804 Msa1015020:intron 30.0%
AAGTTTACAAATTCTTGCGT+TGG - chr7_1:26073924-26073943 Msa1015020:intron 30.0%
TATAAGCAAAGGAACACTTT+AGG - chr7_1:26074124-26074143 Msa1015020:intron 30.0%
AATTGCACACAATAAGTAAG+TGG + chr7_1:26074292-26074311 None:intergenic 30.0%
CACTTATACAACGAGATATT+TGG - chr7_1:26074391-26074410 Msa1015020:intron 30.0%
!! ATTTTGTTATAACCCATGTG+AGG - chr7_1:26074444-26074463 Msa1015020:intron 30.0%
CAAATTGCAAACTTTCCTTA+TGG - chr7_1:26074640-26074659 Msa1015020:intron 30.0%
AAGGGTGATTAACATTCAAA+TGG + chr7_1:26074836-26074855 None:intergenic 30.0%
TGCTGAATCTTCATTCAAAA+GGG + chr7_1:26074854-26074873 None:intergenic 30.0%
ATGCTGAATCTTCATTCAAA+AGG + chr7_1:26074855-26074874 None:intergenic 30.0%
TGTCCTATAATGTCATTAAC+TGG + chr7_1:26074884-26074903 None:intergenic 30.0%
AGATCTTGTAGAACAACTTA+AGG + chr7_1:26075099-26075118 None:intergenic 30.0%
CAATGCAGAAGAGAATTTAG+TGG + chr7_1:26068966-26068985 None:intergenic 35.0%
! GATGATGATGATGATGATGA+TGG + chr7_1:26069016-26069035 None:intergenic 35.0%
! TATATTACAGGATGGTGGTT+TGG - chr7_1:26069289-26069308 Msa1015020:CDS 35.0%
AGCAAGAAAAGAAGGAAGTA+AGG + chr7_1:26069444-26069463 None:intergenic 35.0%
GTAATCACATTTGTCGGTAT+CGG - chr7_1:26069657-26069676 Msa1015020:intron 35.0%
AGATTGTAACATAACCCCAA+TGG + chr7_1:26069966-26069985 None:intergenic 35.0%
ATTGGGGTTATGTTACAATC+TGG - chr7_1:26069965-26069984 Msa1015020:intron 35.0%
!! GGTTTTGCTCTTGTTTCAAT+TGG - chr7_1:26070137-26070156 Msa1015020:intron 35.0%
AGTTACATTGGTCCTTGAAT+GGG + chr7_1:26070314-26070333 None:intergenic 35.0%
TAGTTACATTGGTCCTTGAA+TGG + chr7_1:26070315-26070334 None:intergenic 35.0%
ATGTCTTTCGCTAGTTACAT+TGG + chr7_1:26070326-26070345 None:intergenic 35.0%
TTTGTAACTTCGACTAATGC+AGG - chr7_1:26070392-26070411 Msa1015020:intron 35.0%
TTGTAACTTCGACTAATGCA+GGG - chr7_1:26070393-26070412 Msa1015020:intron 35.0%
! GTGTAGAGTGTTATCACTAT+AGG + chr7_1:26070419-26070438 None:intergenic 35.0%
TATTTATGAGCAAGTAGGAG+AGG - chr7_1:26070480-26070499 Msa1015020:intron 35.0%
TGGTTAATGCAGTGATTTAG+GGG + chr7_1:26070669-26070688 None:intergenic 35.0%
CTGGTTAATGCAGTGATTTA+GGG + chr7_1:26070670-26070689 None:intergenic 35.0%
ACACAACACAAATATACTCC+TGG + chr7_1:26070689-26070708 None:intergenic 35.0%
CAAGAATATAGACGGTTCAA+AGG - chr7_1:26070717-26070736 Msa1015020:CDS 35.0%
CCACTACATAGAAATCCAAT+TGG + chr7_1:26070788-26070807 None:intergenic 35.0%
CCAATTGGATTTCTATGTAG+TGG - chr7_1:26070785-26070804 Msa1015020:intron 35.0%
TATCTATGTCGCTAAATGAG+TGG + chr7_1:26070974-26070993 None:intergenic 35.0%
GACATAGATAAGTACACATC+TGG - chr7_1:26070984-26071003 Msa1015020:intron 35.0%
! TCAAGCTACTTGATAGTTCA+TGG + chr7_1:26071186-26071205 None:intergenic 35.0%
GTAGCTTGACATCTATTTCA+TGG - chr7_1:26071197-26071216 Msa1015020:intron 35.0%
!!! CTTAGCAATTTTTGGCAAAC+AGG + chr7_1:26071308-26071327 None:intergenic 35.0%
CATGCGAAATATCAAGACAT+AGG - chr7_1:26071439-26071458 Msa1015020:intron 35.0%
CATCGAAGTTGTTAGATGAA+TGG - chr7_1:26071469-26071488 Msa1015020:intron 35.0%
! TTATTCGGACGTAGTCTTAA+TGG + chr7_1:26071539-26071558 None:intergenic 35.0%
TCTCTGTCTTTGTAAATAGC+CGG + chr7_1:26071701-26071720 None:intergenic 35.0%
! TTCTGATCACCTCTATTTTC+TGG - chr7_1:26071770-26071789 Msa1015020:CDS 35.0%
! TTCTCTAGTCTTCACAATAG+TGG - chr7_1:26071894-26071913 Msa1015020:intron 35.0%
AAAGCGGAATAGCAGTTAAT+GGG + chr7_1:26071924-26071943 None:intergenic 35.0%
TAAAGCGGAATAGCAGTTAA+TGG + chr7_1:26071925-26071944 None:intergenic 35.0%
ACAGTACACGTTCATCTTAA+TGG - chr7_1:26072191-26072210 Msa1015020:intron 35.0%
CATTACCAAAACAGTGCATA+AGG - chr7_1:26072223-26072242 Msa1015020:intron 35.0%
CAAAACAGTGCATAAGGTTT+GGG - chr7_1:26072229-26072248 Msa1015020:intron 35.0%
ATATGCATCACGGAAAAATG+TGG - chr7_1:26072266-26072285 Msa1015020:intron 35.0%
TATGCATCACGGAAAAATGT+GGG - chr7_1:26072267-26072286 Msa1015020:intron 35.0%
! TACTTTTGGCCTAATGTACA+AGG + chr7_1:26072423-26072442 None:intergenic 35.0%
TTGTACATTAGGCCAAAAGT+AGG - chr7_1:26072422-26072441 Msa1015020:intron 35.0%
TCGCAAACAAAACCTTAAAG+GGG + chr7_1:26072610-26072629 None:intergenic 35.0%
CTCGCAAACAAAACCTTAAA+GGG + chr7_1:26072611-26072630 None:intergenic 35.0%
ACTCGCAAACAAAACCTTAA+AGG + chr7_1:26072612-26072631 None:intergenic 35.0%
!!! TAAGGTTTTGTTTGCGAGTT+AGG - chr7_1:26072613-26072632 Msa1015020:intron 35.0%
!!! AGTTGGGTTTTAGAGCATTT+TGG + chr7_1:26072838-26072857 None:intergenic 35.0%
!! TCAGAGCAAAGTTCTAAATG+AGG - chr7_1:26072899-26072918 Msa1015020:intron 35.0%
!! CAGAGCAAAGTTCTAAATGA+GGG - chr7_1:26072900-26072919 Msa1015020:intron 35.0%
! AATGAGGGTAAATAAGTTGG+CGG - chr7_1:26072915-26072934 Msa1015020:intron 35.0%
GAGATAGGCTGATGTAAAAA+TGG + chr7_1:26072995-26073014 None:intergenic 35.0%
! TTTTTACATCAGCCTATCTC+AGG - chr7_1:26072995-26073014 Msa1015020:intron 35.0%
ATGTTGAGAACCATGTCTTT+AGG + chr7_1:26073105-26073124 None:intergenic 35.0%
TGACATTAAAGGTTATAGGC+AGG + chr7_1:26073204-26073223 None:intergenic 35.0%
CAATGCCCTAATGACATTAA+AGG + chr7_1:26073215-26073234 None:intergenic 35.0%
CTTTAATGTCATTAGGGCAT+TGG - chr7_1:26073213-26073232 Msa1015020:intron 35.0%
CTTGTACCTAAATCTTACCT+TGG - chr7_1:26073287-26073306 Msa1015020:intron 35.0%
!! TTTTCCCTTTTGTTTGGGAA+GGG + chr7_1:26073471-26073490 None:intergenic 35.0%
!! ATTTTCCCTTTTGTTTGGGA+AGG + chr7_1:26073472-26073491 None:intergenic 35.0%
ACAAATCTACTTGGTATGCT+TGG - chr7_1:26073683-26073702 Msa1015020:intron 35.0%
ACCCTGAAAAACCAAAGTAA+TGG + chr7_1:26073789-26073808 None:intergenic 35.0%
!!! GGTCTTGATTTTGTTGTTGA+TGG - chr7_1:26073806-26073825 Msa1015020:intron 35.0%
!!! CTTGATTTTGTTGTTGATGG+TGG - chr7_1:26073809-26073828 Msa1015020:intron 35.0%
TGGCACAATGGGTAAAAAAT+GGG + chr7_1:26073965-26073984 None:intergenic 35.0%
ATGGCACAATGGGTAAAAAA+TGG + chr7_1:26073966-26073985 None:intergenic 35.0%
!!! TTTTTTACCCATTGTGCCAT+TGG - chr7_1:26073966-26073985 Msa1015020:intron 35.0%
AAGTGTACCATCCATATTAG+CGG + chr7_1:26073995-26074014 None:intergenic 35.0%
CCTTTGCTTATAATAGTGAC+CGG + chr7_1:26074116-26074135 None:intergenic 35.0%
GGTTGGATTGCAAAACATTT+AGG - chr7_1:26074367-26074386 Msa1015020:intron 35.0%
ACAAAATCATGTTAGCTCGT+GGG + chr7_1:26074431-26074450 None:intergenic 35.0%
AACAAAATCATGTTAGCTCG+TGG + chr7_1:26074432-26074451 None:intergenic 35.0%
GAAATCAATTGTGGGAAATG+TGG + chr7_1:26074545-26074564 None:intergenic 35.0%
ACTTAGAGTCATGTGATTTC+AGG - chr7_1:26074738-26074757 Msa1015020:CDS 35.0%
CTTAGAGTCATGTGATTTCA+GGG - chr7_1:26074739-26074758 Msa1015020:CDS 35.0%
! AATACCATCCAGTCTGAAAT+TGG + chr7_1:26074766-26074785 None:intergenic 35.0%
AATTTCAGACTGGATGGTAT+TGG - chr7_1:26074765-26074784 Msa1015020:CDS 35.0%
GAAGATAATCAGCAAACTGA+TGG - chr7_1:26074787-26074806 Msa1015020:intron 35.0%
TTAACATTCAAATGGCAGCA+GGG + chr7_1:26074828-26074847 None:intergenic 35.0%
ATTAACATTCAAATGGCAGC+AGG + chr7_1:26074829-26074848 None:intergenic 35.0%
AATGACATTATAGGACACAC+AGG - chr7_1:26074887-26074906 Msa1015020:CDS 35.0%
AGATGCCCTATACTTCATAA+GGG - chr7_1:26074986-26075005 Msa1015020:CDS 35.0%
GATAGCCCTTATGAAGTATA+GGG + chr7_1:26074994-26075013 None:intergenic 35.0%
AGATAGCCCTTATGAAGTAT+AGG + chr7_1:26074995-26075014 None:intergenic 35.0%
TATACTTCATAAGGGCTATC+TGG - chr7_1:26074994-26075013 Msa1015020:CDS 35.0%
GAAATGGCAGCTTGTATTTG+TGG - chr7_1:26069057-26069076 Msa1015020:three_prime_UTR 40.0%
CATTGATACTACTACTCCTC+GGG + chr7_1:26069142-26069161 None:intergenic 40.0%
CCATTGATACTACTACTCCT+CGG + chr7_1:26069143-26069162 None:intergenic 40.0%
! CTGTGTATTTGAGACGCTTT+GGG + chr7_1:26069179-26069198 None:intergenic 40.0%
! TCTGTGTATTTGAGACGCTT+TGG + chr7_1:26069180-26069199 None:intergenic 40.0%
! GAAAGTGTAAAGGGAAGAAG+AGG + chr7_1:26069245-26069264 None:intergenic 40.0%
!! TGGTTCTGACTCATGGAAAT+TGG - chr7_1:26069334-26069353 Msa1015020:intron 40.0%
!!! CTTTTCAAACAAGGTGCTGT+TGG - chr7_1:26069371-26069390 Msa1015020:intron 40.0%
CTTCTCATCGAATGCATGTT+TGG + chr7_1:26069794-26069813 None:intergenic 40.0%
CATGCATTCGATGAGAAGTT+TGG - chr7_1:26069796-26069815 Msa1015020:intron 40.0%
!! TTCGATGAGAAGTTTGGTGT+TGG - chr7_1:26069802-26069821 Msa1015020:intron 40.0%
CTTCTCATCGAATGCATGTT+TGG + chr7_1:26069794-26069813 None:intergenic 40.0%
CATGCATTCGATGAGAAGTT+TGG - chr7_1:26069796-26069815 Msa1015020:intron 40.0%
CTTTGTTGAGTATGGCTCAT+AGG - chr7_1:26069906-26069925 Msa1015020:intron 40.0%
GTTGAACAAACAGAGCCATT+GGG - chr7_1:26069948-26069967 Msa1015020:intron 40.0%
TTGAACAAACAGAGCCATTG+GGG - chr7_1:26069949-26069968 Msa1015020:intron 40.0%
AACAAGAGCAAAACCATGCA+TGG + chr7_1:26070132-26070151 None:intergenic 40.0%
CCAATGAGTGACTAATCTGA+GGG + chr7_1:26070164-26070183 None:intergenic 40.0%
! CCTCAGATTAGTCACTCATT+GGG - chr7_1:26070162-26070181 Msa1015020:intron 40.0%
! AGATTAGTCACTCATTGGGT+CGG - chr7_1:26070166-26070185 Msa1015020:intron 40.0%
AGATTGTTAGAATGACAGCC+CGG + chr7_1:26070250-26070269 None:intergenic 40.0%
GGTCTTGCATTAGTTCAGTT+TGG + chr7_1:26070293-26070312 None:intergenic 40.0%
ACTAATGCAAGACCCATTCA+AGG - chr7_1:26070299-26070318 Msa1015020:intron 40.0%
ACTAGCGAAAGACATATTCG+AGG - chr7_1:26070331-26070350 Msa1015020:intron 40.0%
CTAGCGAAAGACATATTCGA+GGG - chr7_1:26070332-26070351 Msa1015020:intron 40.0%
CAATGGCTGAGTTGTTTGTT+AGG + chr7_1:26070589-26070608 None:intergenic 40.0%
CAAACAACTCAGCCATTGAA+CGG - chr7_1:26070591-26070610 Msa1015020:intron 40.0%
TTAATGCAGTGATTTAGGGG+GGG + chr7_1:26070666-26070685 None:intergenic 40.0%
GTTAATGCAGTGATTTAGGG+GGG + chr7_1:26070667-26070686 None:intergenic 40.0%
GGTTAATGCAGTGATTTAGG+GGG + chr7_1:26070668-26070687 None:intergenic 40.0%
CCTGGTTAATGCAGTGATTT+AGG + chr7_1:26070671-26070690 None:intergenic 40.0%
CCTAAATCACTGCATTAACC+AGG - chr7_1:26070668-26070687 Msa1015020:intron 40.0%
ATATAGACGGTTCAAAGGTG+AGG - chr7_1:26070722-26070741 Msa1015020:CDS 40.0%
CTTAGCAGCGTTATTCAACT+TGG + chr7_1:26071232-26071251 None:intergenic 40.0%
GGATTGAACTCTGAACTTCA+TGG + chr7_1:26071345-26071364 None:intergenic 40.0%
CACTAAACCCAAGTTCTACT+CGG + chr7_1:26071587-26071606 None:intergenic 40.0%
TTTAGTGCAGAGCTAAACAC+AGG - chr7_1:26071600-26071619 Msa1015020:intron 40.0%
! CTCTATTCCACTGCTATTTG+CGG + chr7_1:26071658-26071677 None:intergenic 40.0%
!!! TCACCTCTATTTTCTGGCTA+TGG - chr7_1:26071776-26071795 Msa1015020:CDS 40.0%
AAGAAAACAGAGGCAAGAAG+CGG + chr7_1:26071818-26071837 None:intergenic 40.0%
CTATTCCGCTTTAGCAGTTT+CGG - chr7_1:26071932-26071951 Msa1015020:intron 40.0%
TATTCCGCTTTAGCAGTTTC+GGG - chr7_1:26071933-26071952 Msa1015020:intron 40.0%
! CCAAACCTTATGCACTGTTT+TGG + chr7_1:26072231-26072250 None:intergenic 40.0%
CCAAAACAGTGCATAAGGTT+TGG - chr7_1:26072228-26072247 Msa1015020:intron 40.0%
ATTAGGCCAAAAGTAGGTTG+AGG - chr7_1:26072428-26072447 Msa1015020:intron 40.0%
!!! AAGTGATGTGTTTTTCAGGG+TGG + chr7_1:26072457-26072476 None:intergenic 40.0%
TGCACTGTTATACCCCTTTA+AGG - chr7_1:26072595-26072614 Msa1015020:intron 40.0%
TTTGCGAGTTAGGTTTCGAA+GGG - chr7_1:26072623-26072642 Msa1015020:intron 40.0%
!!! GGGTTTTAGAGCATTTTGGA+GGG + chr7_1:26072834-26072853 None:intergenic 40.0%
!!! TGGGTTTTAGAGCATTTTGG+AGG + chr7_1:26072835-26072854 None:intergenic 40.0%
!! TTGGGCTTTGTTTGTGAGTT+GGG + chr7_1:26072854-26072873 None:intergenic 40.0%
GCGAATGGGTATATACACTT+GGG + chr7_1:26072872-26072891 None:intergenic 40.0%
TGCGAATGGGTATATACACT+TGG + chr7_1:26072873-26072892 None:intergenic 40.0%
!! CCATTTGTGATGGATGTGAA+CGG - chr7_1:26073059-26073078 Msa1015020:CDS 40.0%
!! CATTTGTGATGGATGTGAAC+GGG - chr7_1:26073060-26073079 Msa1015020:CDS 40.0%
ACCATGTCTTTAGGCAATGT+GGG + chr7_1:26073096-26073115 None:intergenic 40.0%
AACCATGTCTTTAGGCAATG+TGG + chr7_1:26073097-26073116 None:intergenic 40.0%
ATGGTTCTCAACATACAAGC+CGG - chr7_1:26073111-26073130 Msa1015020:CDS 40.0%
CTAACTCAACCTTACGAAAC+CGG + chr7_1:26073133-26073152 None:intergenic 40.0%
AATAGAAACGGTGATACCTC+TGG + chr7_1:26073398-26073417 None:intergenic 40.0%
GTATCACCGTTTCTATTGCA+TGG - chr7_1:26073401-26073420 Msa1015020:intron 40.0%
!! TTTCCCTTTTGTTTGGGAAG+GGG + chr7_1:26073470-26073489 None:intergenic 40.0%
TCTATAAATCCTACTCCCTC+CGG - chr7_1:26074094-26074113 Msa1015020:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr7_1:26074112-26074131 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr7_1:26074113-26074132 None:intergenic 40.0%
CCGGTCACTATTATAAGCAA+AGG - chr7_1:26074113-26074132 Msa1015020:intron 40.0%
TTCAGTAAGAGCTGTCCAAA+TGG - chr7_1:26074310-26074329 Msa1015020:intron 40.0%
! CTAATGGGTCAAAAGCCATT+TGG + chr7_1:26074328-26074347 None:intergenic 40.0%
! TTTTGACCCATTAGCTAACC+CGG - chr7_1:26074334-26074353 Msa1015020:intron 40.0%
TTGAAATGCCCCATCTTACA+TGG - chr7_1:26074486-26074505 Msa1015020:intron 40.0%
! TTCCTTATGGTGCTAAGTAG+TGG - chr7_1:26074653-26074672 Msa1015020:intron 40.0%
TACCACTACTTAGCACCATA+AGG + chr7_1:26074658-26074677 None:intergenic 40.0%
! CTTATGAAGTATAGGGCATC+TGG + chr7_1:26074987-26075006 None:intergenic 40.0%
CAGATGCCCTATACTTCATA+AGG - chr7_1:26074985-26075004 Msa1015020:CDS 40.0%
TTTGTGGCCATAAACCTCCA+TGG - chr7_1:26069073-26069092 Msa1015020:three_prime_UTR 45.0%
CGAAAAGCCATGGAGGTTTA+TGG + chr7_1:26069083-26069102 None:intergenic 45.0%
CCGAGGAGTAGTAGTATCAA+TGG - chr7_1:26069140-26069159 Msa1015020:three_prime_UTR 45.0%
TACATTGAAGCTGACCCATC+TGG - chr7_1:26069314-26069333 Msa1015020:CDS 45.0%
TCCATGAGTCAGAACCAGAT+GGG + chr7_1:26069331-26069350 None:intergenic 45.0%
TTCCATGAGTCAGAACCAGA+TGG + chr7_1:26069332-26069351 None:intergenic 45.0%
! GCACTGACAGTGTATCAGTA+GGG + chr7_1:26069403-26069422 None:intergenic 45.0%
!! AGCACTGACAGTGTATCAGT+AGG + chr7_1:26069404-26069423 None:intergenic 45.0%
GCATTCGATGAGAAGTTTGG+TGG - chr7_1:26069799-26069818 Msa1015020:intron 45.0%
CTCATAGGTACCTGAGAAGT+GGG - chr7_1:26069921-26069940 Msa1015020:intron 45.0%
GGTTGAACAAACAGAGCCAT+TGG - chr7_1:26069947-26069966 Msa1015020:intron 45.0%
TGCTCTGCTGTTGGAGAATT+AGG - chr7_1:26070060-26070079 Msa1015020:intron 45.0%
! CCCTCAGATTAGTCACTCAT+TGG - chr7_1:26070161-26070180 Msa1015020:intron 45.0%
CCCAATGAGTGACTAATCTG+AGG + chr7_1:26070165-26070184 None:intergenic 45.0%
ATACCTACGTAGCCGTTCAA+TGG + chr7_1:26070606-26070625 None:intergenic 45.0%
TAAGCGGCTACAAGTAACAG+AGG + chr7_1:26070941-26070960 None:intergenic 45.0%
GAGTGGCATATGATGCTAAG+CGG + chr7_1:26070957-26070976 None:intergenic 45.0%
! GCTGTTAAGCATTGCTTACC+TGG - chr7_1:26071050-26071069 Msa1015020:intron 45.0%
GAGAGAATACTTACAGGACC+AGG + chr7_1:26071071-26071090 None:intergenic 45.0%
CGCAAATAGCAGTGGAATAG+AGG - chr7_1:26071656-26071675 Msa1015020:intron 45.0%
AGACAGAGACTGTGATGTTC+AGG - chr7_1:26071712-26071731 Msa1015020:intron 45.0%
CAGATGAGAATCCTCCTACA+GGG + chr7_1:26071750-26071769 None:intergenic 45.0%
ACAGATGAGAATCCTCCTAC+AGG + chr7_1:26071751-26071770 None:intergenic 45.0%
TCGCCATAGCCAGAAAATAG+AGG + chr7_1:26071782-26071801 None:intergenic 45.0%
AGAAAACAGAGGCAAGAAGC+GGG + chr7_1:26071817-26071836 None:intergenic 45.0%
CAAACCCGAAACTGCTAAAG+CGG + chr7_1:26071940-26071959 None:intergenic 45.0%
!! GCTTTAGCAGTTTCGGGTTT+GGG - chr7_1:26071939-26071958 Msa1015020:intron 45.0%
CTGCTGCCAAATATGCATCA+CGG - chr7_1:26072256-26072275 Msa1015020:intron 45.0%
AAATGGCATCGTCAGGCATA+CGG + chr7_1:26072296-26072315 None:intergenic 45.0%
! TGGTCTCCTCAACCTACTTT+TGG + chr7_1:26072437-26072456 None:intergenic 45.0%
GTTTGCGAGTTAGGTTTCGA+AGG - chr7_1:26072622-26072641 Msa1015020:intron 45.0%
TTGCGAGTTAGGTTTCGAAG+GGG - chr7_1:26072624-26072643 Msa1015020:intron 45.0%
!! CTTGGGCTTTGTTTGTGAGT+TGG + chr7_1:26072855-26072874 None:intergenic 45.0%
!! GCTCTGAAGCTAATGCGAAT+GGG + chr7_1:26072886-26072905 None:intergenic 45.0%
!! TGCTCTGAAGCTAATGCGAA+TGG + chr7_1:26072887-26072906 None:intergenic 45.0%
!! GCAAACACTTGGTCTTGATG+TGG - chr7_1:26072956-26072975 Msa1015020:intron 45.0%
AATGCCTCATTGCCTGAGAT+AGG + chr7_1:26073010-26073029 None:intergenic 45.0%
CCGTTCACATCCATCACAAA+TGG + chr7_1:26073062-26073081 None:intergenic 45.0%
TCCCACATTGCCTAAAGACA+TGG - chr7_1:26073092-26073111 Msa1015020:CDS 45.0%
! ACATACAAGCCGGTTTCGTA+AGG - chr7_1:26073121-26073140 Msa1015020:CDS 45.0%
AGTTCCTGAACGAAGACGAA+TGG - chr7_1:26073336-26073355 Msa1015020:intron 45.0%
TCATCCATTCGTCTTCGTTC+AGG + chr7_1:26073343-26073362 None:intergenic 45.0%
AGCTGATACATATGGACCAG+AGG - chr7_1:26073379-26073398 Msa1015020:intron 45.0%
TTAGCCCCTTCCCAAACAAA+AGG - chr7_1:26073463-26073482 Msa1015020:intron 45.0%
TAGCCCCTTCCCAAACAAAA+GGG - chr7_1:26073464-26073483 Msa1015020:intron 45.0%
!! TGTTGATGGTGGTGTAAGAG+TGG - chr7_1:26073820-26073839 Msa1015020:intron 45.0%
TTTGGTCATGTCAACCACAG+TGG + chr7_1:26073855-26073874 None:intergenic 45.0%
TAACTACCTTTCCTTCCCGT+AGG + chr7_1:26073892-26073911 None:intergenic 45.0%
TCCATATTAGCGGTCTCCAA+TGG + chr7_1:26073985-26074004 None:intergenic 45.0%
TTGGAGACCGCTAATATGGA+TGG - chr7_1:26073985-26074004 Msa1015020:intron 45.0%
GTGTGAACTTGACCTCACAT+GGG + chr7_1:26074459-26074478 None:intergenic 45.0%
! GATGGGGCATTTCAAAGAAG+CGG + chr7_1:26074481-26074500 None:intergenic 45.0%
TTCAGGGTCCAATTTCAGAC+TGG - chr7_1:26074755-26074774 Msa1015020:CDS 45.0%
! TCAGCAAACTGATGGTGAAG+AGG - chr7_1:26074795-26074814 Msa1015020:intron 45.0%
GACATTATAGGACACACAGG+TGG - chr7_1:26074890-26074909 Msa1015020:CDS 45.0%
!! TTGTAAAAATAAAAATAAAA+AGG - chr7_1:26069509-26069528 Msa1015020:intron 5.0%
!!! TTTTTTATATTTTTAAAACT+TGG + chr7_1:26070195-26070214 None:intergenic 5.0%
!! CTGCATTGTTCGGTGCTACA+AGG - chr7_1:26068978-26068997 Msa1015020:three_prime_UTR 50.0%
!! AAAGCGTCGAAAAGCCATGG+AGG + chr7_1:26069090-26069109 None:intergenic 50.0%
!! GAGAAAGCGTCGAAAAGCCA+TGG + chr7_1:26069093-26069112 None:intergenic 50.0%
CTACTACTCCTCGGGATTTG+TGG + chr7_1:26069134-26069153 None:intergenic 50.0%
!! ACCCATCTGGTTCTGACTCA+TGG - chr7_1:26069327-26069346 Msa1015020:intron 50.0%
! CGATGAGAAGTTTGGTGGTC+AGG - chr7_1:26069841-26069860 Msa1015020:intron 50.0%
GCTCATAGGTACCTGAGAAG+TGG - chr7_1:26069920-26069939 Msa1015020:intron 50.0%
TAGGTACCTGAGAAGTGGGT+AGG - chr7_1:26069925-26069944 Msa1015020:intron 50.0%
AGGTACCTGAGAAGTGGGTA+GGG - chr7_1:26069926-26069945 Msa1015020:intron 50.0%
TTCAACCCTACCCACTTCTC+AGG + chr7_1:26069934-26069953 None:intergenic 50.0%
AACTGCAACTGCTCTGCTGT+TGG - chr7_1:26070051-26070070 Msa1015020:intron 50.0%
GAGCAAAACCATGCATGGAC+TGG + chr7_1:26070127-26070146 None:intergenic 50.0%
GATTTAGGGGGGGTAAAACG+TGG + chr7_1:26070656-26070675 None:intergenic 50.0%
GCTGTTCTTGCGCTTCCAAT+TGG - chr7_1:26070770-26070789 Msa1015020:intron 50.0%
TACACATCTGGGTTTCCGTG+TGG - chr7_1:26070996-26071015 Msa1015020:intron 50.0%
!! TTTCCGTGTGGTGATGGTCA+AGG - chr7_1:26071008-26071027 Msa1015020:intron 50.0%
TGCGATAGCCGAGTAGAACT+TGG - chr7_1:26071576-26071595 Msa1015020:intron 50.0%
GCGATAGCCGAGTAGAACTT+GGG - chr7_1:26071577-26071596 Msa1015020:intron 50.0%
TTAGTGGCCGCAAATAGCAG+TGG - chr7_1:26071648-26071667 Msa1015020:intron 50.0%
GCAGTGGAATAGAGGCTGAA+TGG - chr7_1:26071664-26071683 Msa1015020:intron 50.0%
GTAAATAGCCGGCTGCTACA+GGG + chr7_1:26071690-26071709 None:intergenic 50.0%
TGTAAATAGCCGGCTGCTAC+AGG + chr7_1:26071691-26071710 None:intergenic 50.0%
GGTTCTCTGAATAGCCCTGT+AGG - chr7_1:26071733-26071752 Msa1015020:intron 50.0%
TCTCTGAATAGCCCTGTAGG+AGG - chr7_1:26071736-26071755 Msa1015020:CDS 50.0%
!! CGCTTTAGCAGTTTCGGGTT+TGG - chr7_1:26071938-26071957 Msa1015020:intron 50.0%
GCTTGACAAATGGCATCGTC+AGG + chr7_1:26072303-26072322 None:intergenic 50.0%
GAGTTAGGTTTCGAAGGGGA+GGG - chr7_1:26072628-26072647 Msa1015020:intron 50.0%
AGTTAGGTTTCGAAGGGGAG+GGG - chr7_1:26072629-26072648 Msa1015020:intron 50.0%
TCAGCCTATCTCAGGCAATG+AGG - chr7_1:26073003-26073022 Msa1015020:intron 50.0%
TCCATCACAAATGGTTGCCG+AGG + chr7_1:26073053-26073072 None:intergenic 50.0%
!! TTGTGATGGATGTGAACGGG+TGG - chr7_1:26073063-26073082 Msa1015020:CDS 50.0%
! TAGGACTCTGGGAGGCAATT+TGG + chr7_1:26073873-26073892 None:intergenic 50.0%
AATTGCCTCCCAGAGTCCTA+CGG - chr7_1:26073873-26073892 Msa1015020:intron 50.0%
TTTCCTTCCCGTAGGACTCT+GGG + chr7_1:26073884-26073903 None:intergenic 50.0%
GCCATTGGAGACCGCTAATA+TGG - chr7_1:26073981-26074000 Msa1015020:intron 50.0%
TAATAGTGACCGGAGGGAGT+AGG + chr7_1:26074106-26074125 None:intergenic 50.0%
!! TGTGAGCCGGGTTAGCTAAT+GGG + chr7_1:26074343-26074362 None:intergenic 50.0%
! AGCTCGTGGGTTGAGTAGTA+TGG + chr7_1:26074418-26074437 None:intergenic 50.0%
GGTGTGAACTTGACCTCACA+TGG + chr7_1:26074460-26074479 None:intergenic 50.0%
GCGAGACACCATGTAAGATG+GGG + chr7_1:26074497-26074516 None:intergenic 50.0%
GGCGAGACACCATGTAAGAT+GGG + chr7_1:26074498-26074517 None:intergenic 50.0%
TGGCGAGACACCATGTAAGA+TGG + chr7_1:26074499-26074518 None:intergenic 50.0%
GGGTCCAATTTCAGACTGGA+TGG - chr7_1:26074759-26074778 Msa1015020:CDS 50.0%
! GCGCACTGACACGTCAAAAC+TGG - chr7_1:26069604-26069623 Msa1015020:intron 55.0%
CAGCCATTGAACGGCTACGT+AGG - chr7_1:26070600-26070619 Msa1015020:intron 55.0%
TCTGGGTTTCCGTGTGGTGA+TGG - chr7_1:26071002-26071021 Msa1015020:intron 55.0%
! TGGCCTTGACCATCACCACA+CGG + chr7_1:26071014-26071033 None:intergenic 55.0%
CGAGTTAGGTTTCGAAGGGG+AGG - chr7_1:26072627-26072646 Msa1015020:intron 55.0%
!! AAATGGTTGCCGAGGCACTG+AGG + chr7_1:26073045-26073064 None:intergenic 55.0%
GCCTCGGCAACCATTTGTGA+TGG - chr7_1:26073049-26073068 Msa1015020:CDS 55.0%
ATTGCCTCCCAGAGTCCTAC+GGG - chr7_1:26073874-26073893 Msa1015020:intron 55.0%
CTTTCCTTCCCGTAGGACTC+TGG + chr7_1:26073885-26073904 None:intergenic 55.0%
CAGAGTCCTACGGGAAGGAA+AGG - chr7_1:26073883-26073902 Msa1015020:intron 55.0%
GCGGTCTCCAATGGCACAAT+GGG + chr7_1:26073976-26073995 None:intergenic 55.0%
AGCGGTCTCCAATGGCACAA+TGG + chr7_1:26073977-26073996 None:intergenic 55.0%
!! CTGTGAGCCGGGTTAGCTAA+TGG + chr7_1:26074344-26074363 None:intergenic 55.0%
CATTAGCTAACCCGGCTCAC+AGG - chr7_1:26074342-26074361 Msa1015020:intron 55.0%
AATCCAACCCACCTGTGAGC+CGG + chr7_1:26074356-26074375 None:intergenic 55.0%
CCTCGGGATTTGTGGCTTCG+TGG + chr7_1:26069126-26069145 None:intergenic 60.0%
CCACGAAGCCACAAATCCCG+AGG - chr7_1:26069123-26069142 Msa1015020:three_prime_UTR 60.0%
GTGTTGGGCCAGTCCATGCA+TGG - chr7_1:26070116-26070135 Msa1015020:intron 60.0%
CTGAATGGCCCTGTAGCAGC+CGG - chr7_1:26071679-26071698 Msa1015020:intron 60.0%
TAGGTTTCGAAGGGGAGGGG+AGG - chr7_1:26072632-26072651 Msa1015020:intron 60.0%
AGTGGCTCAGTCGTCCACTG+TGG - chr7_1:26073838-26073857 Msa1015020:intron 60.0%
TAGCTAACCCGGCTCACAGG+TGG - chr7_1:26074345-26074364 Msa1015020:intron 60.0%
AGCTAACCCGGCTCACAGGT+GGG - chr7_1:26074346-26074365 Msa1015020:intron 60.0%
ATCCAACCCACCTGTGAGCC+GGG + chr7_1:26074355-26074374 None:intergenic 60.0%
!! AATGTGGTGCCACCGCTCGA+TGG + chr7_1:26074529-26074548 None:intergenic 60.0%
TTCGAAGGGGAGGGGAGGAG+AGG - chr7_1:26072637-26072656 Msa1015020:intron 65.0%
!! TTGCCGAGGCACTGAGGTGG+GGG + chr7_1:26073039-26073058 None:intergenic 65.0%
!! GTTGCCGAGGCACTGAGGTG+GGG + chr7_1:26073040-26073059 None:intergenic 65.0%
!! GGTTGCCGAGGCACTGAGGT+GGG + chr7_1:26073041-26073060 None:intergenic 65.0%
!! TGGTTGCCGAGGCACTGAGG+TGG + chr7_1:26073042-26073061 None:intergenic 65.0%
CCTTCCCGTAGGACTCTGGG+AGG + chr7_1:26073881-26073900 None:intergenic 65.0%
CCTCCCAGAGTCCTACGGGA+AGG - chr7_1:26073878-26073897 Msa1015020:intron 65.0%
AACCCGGCTCACAGGTGGGT+TGG - chr7_1:26074350-26074369 Msa1015020:intron 65.0%
CCACCCCCACCTCAGTGCCT+CGG - chr7_1:26073033-26073052 Msa1015020:CDS 70.0%
CGCCACACTCCGCCATCGAG+CGG - chr7_1:26074514-26074533 Msa1015020:intron 70.0%
!! CACCGCTCGATGGCGGAGTG+TGG + chr7_1:26074519-26074538 None:intergenic 70.0%
CACACTCCGCCATCGAGCGG+TGG - chr7_1:26074517-26074536 Msa1015020:intron 70.0%
!! GTGGTGCCACCGCTCGATGG+CGG + chr7_1:26074526-26074545 None:intergenic 70.0%
!! CCGAGGCACTGAGGTGGGGG+TGG + chr7_1:26073036-26073055 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 26068955 26075140 26068955 ID=Msa1015020;Name=Msa1015020
chr7_1 mRNA 26068955 26075140 26068955 ID=Msa1015020-mRNA-1;Parent=Msa1015020;Name=Msa1015020-mRNA-1;_AED=0.05;_eAED=0.05;_QI=77|1|1|1|0.88|0.8|10|300|299
chr7_1 exon 26068955 26069335 26068955 ID=Msa1015020-mRNA-1:exon:5719;Parent=Msa1015020-mRNA-1
chr7_1 exon 26070191 26070289 26070191 ID=Msa1015020-mRNA-1:exon:5718;Parent=Msa1015020-mRNA-1
chr7_1 exon 26070695 26070764 26070695 ID=Msa1015020-mRNA-1:exon:5717;Parent=Msa1015020-mRNA-1
chr7_1 exon 26071734 26071900 26071734 ID=Msa1015020-mRNA-1:exon:5716;Parent=Msa1015020-mRNA-1
chr7_1 exon 26073019 26073141 26073019 ID=Msa1015020-mRNA-1:exon:5715;Parent=Msa1015020-mRNA-1
chr7_1 exon 26073357 26073381 26073357 ID=Msa1015020-mRNA-1:exon:5714;Parent=Msa1015020-mRNA-1
chr7_1 exon 26073474 26073527 26073474 ID=Msa1015020-mRNA-1:exon:5713;Parent=Msa1015020-mRNA-1
chr7_1 exon 26074681 26074796 26074681 ID=Msa1015020-mRNA-1:exon:5712;Parent=Msa1015020-mRNA-1
chr7_1 exon 26074877 26075053 26074877 ID=Msa1015020-mRNA-1:exon:5711;Parent=Msa1015020-mRNA-1
chr7_1 exon 26075076 26075140 26075076 ID=Msa1015020-mRNA-1:exon:5710;Parent=Msa1015020-mRNA-1
chr7_1 five_prime_UTR 26075076 26075140 26075076 ID=Msa1015020-mRNA-1:five_prime_utr;Parent=Msa1015020-mRNA-1
chr7_1 five_prime_UTR 26075042 26075053 26075042 ID=Msa1015020-mRNA-1:five_prime_utr;Parent=Msa1015020-mRNA-1
chr7_1 CDS 26074877 26075041 26074877 ID=Msa1015020-mRNA-1:cds;Parent=Msa1015020-mRNA-1
chr7_1 CDS 26074681 26074796 26074681 ID=Msa1015020-mRNA-1:cds;Parent=Msa1015020-mRNA-1
chr7_1 CDS 26073474 26073527 26073474 ID=Msa1015020-mRNA-1:cds;Parent=Msa1015020-mRNA-1
chr7_1 CDS 26073357 26073381 26073357 ID=Msa1015020-mRNA-1:cds;Parent=Msa1015020-mRNA-1
chr7_1 CDS 26073019 26073141 26073019 ID=Msa1015020-mRNA-1:cds;Parent=Msa1015020-mRNA-1
chr7_1 CDS 26071734 26071900 26071734 ID=Msa1015020-mRNA-1:cds;Parent=Msa1015020-mRNA-1
chr7_1 CDS 26070695 26070764 26070695 ID=Msa1015020-mRNA-1:cds;Parent=Msa1015020-mRNA-1
chr7_1 CDS 26070191 26070289 26070191 ID=Msa1015020-mRNA-1:cds;Parent=Msa1015020-mRNA-1
chr7_1 CDS 26069255 26069335 26069255 ID=Msa1015020-mRNA-1:cds;Parent=Msa1015020-mRNA-1
chr7_1 three_prime_UTR 26068955 26069254 26068955 ID=Msa1015020-mRNA-1:three_prime_utr;Parent=Msa1015020-mRNA-1
Gene Sequence

>Msa1015020

ATGGAAATGGCAGCTTGTATTTGTGGCCATAAACCTCCATGGCTTTTCGACGCTTTCTCTCATTCAAAACCACGAAGCCACAAATCCCGAGGAGTAGTAGTATCAATGGTTATTAAACGAAGCCCAAAGCGTCTCAAATACACAGATAATAATCGCTTCAACAAGGATGGTGGTTTGGTTTACATTGAAGCTGACCCATCTGGTTCTGACTCATGGAAATTGGAATCAGTTGTTAATCTTTTCAAACAAGGTGCTGTTGGAGTCATCCCTACTGATACACTATATGCGATAGCATGTGACCTAACAAACAACTCAGCCATTGAACGGCTACGTAGAATCAAGAATATAGACGGTTCAAAGCCGCTTAGCATCATATGCCACTCATTTAGCGACATAGATAAGTACACATCTGGGTTTCCGTGTGGTGATGGTCAAGGCCATGCAAATTTATTCAAAGCTGTTAAGCATTGCTTACCTGGTCCTTACACGTTCATCTTAATGGCTAGCAAAGCATTACCAAAACAGTGCATAAGGTTTGGGACTACTGCTGCCAAATATGCATCACGGAAAAATGTGGGTGTCCGTATGCCTGACGATGCCATTTGTCAAGCAATACTAAAGGAGATGAGTACACCATTAATATGTACAAGCATCAAGTTCCTGAACGAAGACGAATGGATGATTGATCCAGTTATGATAGCTGATACATATGGACCAGAGGGTCTTGATTTTGTTGTTGATGGTGGTGTAAGAGTGGCTCAGTCGTCCACTGTGGTTGACATGACCAAATTGCCTCCCAGAGTCCTACGGGAAGGAAAGGGTCCAATTTCAGACTGGATGGTATTGGAAGATAATCAGCAAACTGATGGTGAAGAGGATCTGATCCCTGCTGCCATTTGA

Protein sequence

>Msa1015020

MEMAACICGHKPPWLFDAFSHSKPRSHKSRGVVVSMVIKRSPKRLKYTDNNRFNKDGGLVYIEADPSGSDSWKLESVVNLFKQGAVGVIPTDTLYAIACDLTNNSAIERLRRIKNIDGSKPLSIICHSFSDIDKYTSGFPCGDGQGHANLFKAVKHCLPGPYTFILMASKALPKQCIRFGTTAAKYASRKNVGVRMPDDAICQAILKEMSTPLICTSIKFLNEDEWMIDPVMIADTYGPEGLDFVVDGGVRVAQSSTVVDMTKLPPRVLREGKGPISDWMVLEDNQQTDGEEDLIPAAI*