Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810350 | XP_003615160.1 | 99.615 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 0.0 | 532 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810350 | sp|P42653|1433A_VICFA | 97.297 | 259 | 7 | 0 | 1 | 259 | 1 | 259 | 0.0 | 519 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810350 | B7FIY3 | 99.615 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 0.0 | 532 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094940 | Msa0810350 | 0.806448 | 8.186320e-50 | -8.615850e-47 |
| Msa0722930 | Msa0810350 | -0.804396 | 2.203868e-49 | -8.615850e-47 |
| Msa0723140 | Msa0810350 | -0.802246 | 6.143763e-49 | -8.615850e-47 |
| Msa0732080 | Msa0810350 | 0.875795 | 2.325535e-68 | -8.615850e-47 |
| Msa0773610 | Msa0810350 | -0.827390 | 1.606355e-54 | -8.615850e-47 |
| Msa0788360 | Msa0810350 | -0.800158 | 1.642961e-48 | -8.615850e-47 |
| Msa0810350 | Msa0843280 | -0.808506 | 2.995844e-50 | -8.615850e-47 |
| Msa0810350 | Msa0938420 | -0.802862 | 4.587409e-49 | -8.615850e-47 |
| Msa0810350 | Msa1085960 | 0.802614 | 5.160120e-49 | -8.615850e-47 |
| Msa0810350 | Msa1141250 | 0.820922 | 5.310614e-53 | -8.615850e-47 |
| Msa0810350 | Msa1203360 | -0.840104 | 1.062740e-57 | -8.615850e-47 |
| Msa0810350 | Msa1204980 | 0.839089 | 1.951512e-57 | -8.615850e-47 |
| Msa0810350 | Msa1205010 | 0.841996 | 3.385348e-58 | -8.615850e-47 |
| Msa0810350 | Msa1256540 | 0.849501 | 3.105051e-60 | -8.615850e-47 |
| Msa0810350 | Msa1257870 | 0.800501 | 1.399391e-48 | -8.615850e-47 |
| Msa0810350 | Msa1289830 | 0.807215 | 5.636026e-50 | -8.615850e-47 |
| Msa0810350 | Msa1296960 | 0.855411 | 6.425881e-62 | -8.615850e-47 |
| Msa0810350 | Msa1358960 | -0.801230 | 9.933081e-49 | -8.615850e-47 |
| Msa0810350 | Msa1463560 | 0.849868 | 2.453208e-60 | -8.615850e-47 |
| Msa0158020 | Msa0810350 | -0.801405 | 9.144986e-49 | -8.615850e-47 |
| Msa0175320 | Msa0810350 | 0.802497 | 5.455202e-49 | -8.615850e-47 |
| Msa0185640 | Msa0810350 | 0.857632 | 1.429793e-62 | -8.615850e-47 |
| Msa0198440 | Msa0810350 | -0.805790 | 1.125819e-49 | -8.615850e-47 |
| Msa0226620 | Msa0810350 | 0.818143 | 2.285713e-52 | -8.615850e-47 |
| Msa0379340 | Msa0810350 | 0.851734 | 7.316380e-61 | -8.615850e-47 |
| Msa0428850 | Msa0810350 | 0.855817 | 4.889294e-62 | -8.615850e-47 |
| Msa0455230 | Msa0810350 | -0.803529 | 3.337148e-49 | -8.615850e-47 |
| Msa0260270 | Msa0810350 | 0.829947 | 3.869964e-55 | -8.615850e-47 |
| Msa0265980 | Msa0810350 | 0.804753 | 1.857092e-49 | -8.615850e-47 |
| Msa0278670 | Msa0810350 | -0.805656 | 1.201624e-49 | -8.615850e-47 |
| Msa0342340 | Msa0810350 | 0.855759 | 5.083597e-62 | -8.615850e-47 |
| Msa0540070 | Msa0810350 | -0.820854 | 5.505441e-53 | -8.615850e-47 |
| Msa0576990 | Msa0810350 | 0.823037 | 1.717895e-53 | -8.615850e-47 |
| Msa0591780 | Msa0810350 | -0.803172 | 3.957258e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810350 | MtrunA17_Chr5g0426551 | 99.615 | 260 | 1 | 0 | 1 | 260 | 1 | 260 | 0.0 | 532 |
| Msa0810350 | MtrunA17_Chr3g0132301 | 90.385 | 260 | 25 | 0 | 1 | 260 | 1 | 260 | 9.36e-177 | 486 |
| Msa0810350 | MtrunA17_Chr3g0133161 | 75.949 | 237 | 56 | 1 | 8 | 243 | 11 | 247 | 1.98e-135 | 382 |
| Msa0810350 | MtrunA17_Chr2g0325591 | 72.016 | 243 | 66 | 1 | 8 | 250 | 7 | 247 | 7.25e-129 | 365 |
| Msa0810350 | MtrunA17_Chr2g0283791 | 69.020 | 255 | 72 | 3 | 6 | 256 | 3 | 254 | 4.36e-126 | 358 |
| Msa0810350 | MtrunA17_Chr8g0379011 | 71.967 | 239 | 65 | 1 | 8 | 246 | 7 | 243 | 1.50e-125 | 356 |
| Msa0810350 | MtrunA17_Chr5g0418971 | 70.325 | 246 | 71 | 1 | 3 | 248 | 2 | 245 | 1.71e-124 | 354 |
| Msa0810350 | MtrunA17_Chr2g0316011 | 66.154 | 260 | 85 | 2 | 1 | 259 | 1 | 258 | 8.43e-124 | 353 |
| Msa0810350 | MtrunA17_Chr4g0043141 | 64.017 | 239 | 65 | 2 | 27 | 246 | 1 | 237 | 1.15e-105 | 306 |
| Msa0810350 | MtrunA17_Chr1g0164601 | 58.723 | 235 | 91 | 4 | 8 | 240 | 11 | 241 | 7.81e-91 | 269 |
| Msa0810350 | MtrunA17_Chr3g0082111 | 58.298 | 235 | 92 | 4 | 8 | 240 | 41 | 271 | 5.11e-90 | 268 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810350 | AT1G78300.1 | 90.157 | 254 | 24 | 1 | 8 | 260 | 5 | 258 | 1.78e-169 | 468 |
| Msa0810350 | AT1G35160.1 | 85.985 | 264 | 33 | 2 | 1 | 260 | 1 | 264 | 1.87e-167 | 464 |
| Msa0810350 | AT4G09000.1 | 88.933 | 253 | 26 | 1 | 1 | 251 | 1 | 253 | 2.54e-166 | 461 |
| Msa0810350 | AT1G35160.2 | 77.740 | 292 | 33 | 3 | 1 | 260 | 1 | 292 | 3.52e-161 | 449 |
| Msa0810350 | AT4G09000.2 | 89.344 | 244 | 24 | 1 | 1 | 242 | 1 | 244 | 2.71e-160 | 447 |
| Msa0810350 | AT5G38480.1 | 81.496 | 254 | 46 | 1 | 6 | 258 | 2 | 255 | 3.30e-154 | 429 |
| Msa0810350 | AT3G02520.1 | 80.784 | 255 | 48 | 1 | 6 | 259 | 3 | 257 | 1.34e-152 | 426 |
| Msa0810350 | AT3G02520.2 | 80.784 | 255 | 48 | 1 | 6 | 259 | 3 | 257 | 1.34e-152 | 426 |
| Msa0810350 | AT5G38480.3 | 81.496 | 254 | 45 | 2 | 6 | 258 | 2 | 254 | 1.02e-151 | 423 |
| Msa0810350 | AT5G38480.2 | 81.496 | 254 | 45 | 2 | 6 | 258 | 2 | 254 | 1.02e-151 | 423 |
| Msa0810350 | AT5G10450.2 | 79.508 | 244 | 49 | 1 | 4 | 246 | 3 | 246 | 3.72e-145 | 406 |
| Msa0810350 | AT5G10450.1 | 79.668 | 241 | 48 | 1 | 4 | 243 | 3 | 243 | 8.60e-145 | 405 |
| Msa0810350 | AT5G10450.4 | 77.510 | 249 | 55 | 1 | 4 | 251 | 3 | 251 | 8.93e-145 | 406 |
| Msa0810350 | AT5G10450.3 | 80.000 | 240 | 47 | 1 | 4 | 242 | 3 | 242 | 5.64e-144 | 404 |
| Msa0810350 | AT5G16050.1 | 79.310 | 261 | 50 | 2 | 3 | 260 | 2 | 261 | 3.35e-143 | 402 |
| Msa0810350 | AT5G16050.2 | 79.310 | 261 | 50 | 2 | 3 | 260 | 2 | 261 | 3.35e-143 | 402 |
| Msa0810350 | AT5G65430.2 | 78.138 | 247 | 52 | 2 | 1 | 246 | 1 | 246 | 2.19e-142 | 399 |
| Msa0810350 | AT5G65430.1 | 78.279 | 244 | 51 | 2 | 1 | 243 | 1 | 243 | 6.17e-142 | 398 |
| Msa0810350 | AT5G65430.3 | 78.601 | 243 | 50 | 2 | 1 | 242 | 1 | 242 | 2.83e-141 | 397 |
| Msa0810350 | AT1G26480.1 | 74.180 | 244 | 60 | 3 | 8 | 250 | 10 | 251 | 7.56e-129 | 366 |
| Msa0810350 | AT2G42590.3 | 70.539 | 241 | 69 | 1 | 8 | 248 | 7 | 245 | 3.36e-122 | 349 |
| Msa0810350 | AT2G42590.1 | 70.539 | 241 | 69 | 1 | 8 | 248 | 7 | 245 | 3.39e-122 | 349 |
| Msa0810350 | AT2G42590.2 | 70.833 | 240 | 68 | 1 | 8 | 247 | 7 | 244 | 9.15e-122 | 348 |
| Msa0810350 | AT1G34760.2 | 71.008 | 238 | 67 | 1 | 8 | 245 | 5 | 240 | 3.80e-121 | 346 |
| Msa0810350 | AT1G34760.1 | 71.008 | 238 | 67 | 1 | 8 | 245 | 5 | 240 | 4.76e-121 | 346 |
| Msa0810350 | AT1G22300.2 | 68.254 | 252 | 73 | 2 | 8 | 259 | 5 | 249 | 6.77e-117 | 335 |
| Msa0810350 | AT1G22300.1 | 68.254 | 252 | 73 | 2 | 8 | 259 | 5 | 249 | 6.77e-117 | 335 |
| Msa0810350 | AT1G22300.3 | 69.874 | 239 | 70 | 1 | 8 | 246 | 5 | 241 | 1.40e-115 | 332 |
| Msa0810350 | AT1G78220.1 | 48.927 | 233 | 116 | 2 | 8 | 239 | 5 | 235 | 1.31e-73 | 225 |
| Msa0810350 | AT1G22290.2 | 45.933 | 209 | 91 | 6 | 12 | 217 | 9 | 198 | 4.64e-48 | 159 |
| Msa0810350 | AT1G22290.1 | 45.631 | 206 | 90 | 6 | 12 | 214 | 9 | 195 | 6.36e-48 | 157 |
| Msa0810350 | AT2G10450.1 | 71.429 | 49 | 14 | 0 | 207 | 255 | 16 | 64 | 7.81e-18 | 76.3 |
Find 76 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAACTGTAAAATATGAATT+TGG | 0.146371 | 5_3:+38693523 | Msa0810350:five_prime_UTR |
| ATGGCAAATCCGTACAAATT+AGG | 0.190159 | 5_3:+38693610 | Msa0810350:five_prime_UTR |
| TTCAAATTCAAATGTATAAA+TGG | 0.227294 | 5_3:+38693591 | Msa0810350:five_prime_UTR |
| TGCTGCTTCTGGTGATTCTA+AGG | 0.228252 | 5_3:+38694162 | Msa0810350:CDS |
| AAGAATACCGTTACAGATAT+TGG | 0.234430 | 5_3:-38694110 | None:intergenic |
| TACTGCTCATCGGCGCCTTT+TGG | 0.244944 | 5_3:-38695856 | None:intergenic |
| TGGCAAATCCGTACAAATTA+GGG | 0.253615 | 5_3:+38693611 | Msa0810350:five_prime_UTR |
| TTGATTCCTTCTGCTGCTTC+TGG | 0.276388 | 5_3:+38694151 | Msa0810350:CDS |
| CGATGAGGCTATTGCTGAAT+TGG | 0.295305 | 5_3:+38695615 | Msa0810350:CDS |
| AATGGAAGAACAAACTAAAA+TGG | 0.303214 | 5_3:-38696022 | None:intergenic |
| CGAAGAGATGGTCGATTTCA+TGG | 0.314624 | 5_3:+38693883 | Msa0810350:CDS |
| AAATTTCTATCATATGAAAT+TGG | 0.325146 | 5_3:+38696087 | Msa0810350:three_prime_UTR |
| TGCTTGTGGCCTTGCAAAAC+AGG | 0.353700 | 5_3:+38695149 | Msa0810350:CDS |
| GATAATCACCTTTCATCTTA+AGG | 0.367061 | 5_3:-38694192 | None:intergenic |
| AAACTGTAAAATATGAATTT+GGG | 0.396124 | 5_3:+38693524 | Msa0810350:five_prime_UTR |
| TTGTTTGGGTTTCAGGATGA+TGG | 0.406709 | 5_3:+38695808 | Msa0810350:intron |
| TTCGTAACGTTCGGCTTGTT+CGG | 0.410967 | 5_3:-38693864 | None:intergenic |
| TTTATGATATATGGATGCAC+TGG | 0.414849 | 5_3:+38695998 | Msa0810350:three_prime_UTR |
| AGAGCAAGACCAAGCCTGAT+TGG | 0.420669 | 5_3:-38695081 | None:intergenic |
| TCCGTGATAACCTCACCCTT+TGG | 0.424479 | 5_3:+38695689 | Msa0810350:CDS |
| GACCATCTCTTCGTAACGTT+CGG | 0.437327 | 5_3:-38693873 | None:intergenic |
| AGATGAAAGGTGATTATCAT+AGG | 0.447012 | 5_3:+38694197 | Msa0810350:CDS |
| TACCACCAACTCACCCAATC+AGG | 0.450085 | 5_3:+38695067 | Msa0810350:CDS |
| TTCAGAAACACGTACACAAA+TGG | 0.452182 | 5_3:-38696040 | None:intergenic |
| GCAAGGCCACAAGCACGATC+AGG | 0.466255 | 5_3:-38695141 | None:intergenic |
| ATTGCTGAATTGGATACATT+GGG | 0.469687 | 5_3:+38695625 | Msa0810350:CDS |
| GCTTTCTTCCTTCTGTTCGA+TGG | 0.473046 | 5_3:-38694023 | None:intergenic |
| TACTGCTTATAAAGCTGCTC+AGG | 0.475422 | 5_3:+38694276 | Msa0810350:CDS |
| ATCAAAGAAGCCGCACCAAA+AGG | 0.476807 | 5_3:+38695841 | Msa0810350:CDS |
| GAGCAAGACCAAGCCTGATT+GGG | 0.484933 | 5_3:-38695080 | None:intergenic |
| AAACTCTTCACTCTTCAGAC+AGG | 0.486125 | 5_3:+38696224 | Msa0810350:three_prime_UTR |
| TTGTGAGAAATGTTTGTAAA+GGG | 0.487958 | 5_3:-38693725 | None:intergenic |
| TATTGCTGAATTGGATACAT+TGG | 0.488219 | 5_3:+38695624 | Msa0810350:CDS |
| ACGTGAAGAGTTCGTCTACA+TGG | 0.496790 | 5_3:+38693832 | Msa0810350:CDS |
| TTGCCATGGATCGATGAATC+TGG | 0.497923 | 5_3:-38693796 | None:intergenic |
| TGGTGTTGGTGCGGTTGCCA+TGG | 0.499485 | 5_3:-38693810 | None:intergenic |
| GGTGAGTTCTTCGCTTTCGA+CGG | 0.507397 | 5_3:-38693921 | None:intergenic |
| TCGGAGCAAGACGTGCTTCG+TGG | 0.514368 | 5_3:+38693987 | Msa0810350:CDS |
| TTTGTGAGAAATGTTTGTAA+AGG | 0.520519 | 5_3:-38693726 | None:intergenic |
| AACTCTCCTGATCGTGCTTG+TGG | 0.523777 | 5_3:+38695135 | Msa0810350:CDS |
| GGATCGATGAATCTGGTTGA+AGG | 0.526176 | 5_3:-38693789 | None:intergenic |
| CCTTTGGACCTCTGACATGC+AGG | 0.533382 | 5_3:+38695705 | Msa0810350:CDS |
| TGAGAAATGTTTGTAAAGGG+TGG | 0.536454 | 5_3:-38693722 | None:intergenic |
| TTCTTCGCTTTCGACGGCGG+CGG | 0.538091 | 5_3:-38693915 | None:intergenic |
| CCAACTCACCCAATCAGGCT+TGG | 0.548958 | 5_3:+38695072 | Msa0810350:CDS |
| CATCTCTTCCATCGAACAGA+AGG | 0.549390 | 5_3:+38694015 | Msa0810350:CDS |
| CCTGCATGTCAGAGGTCCAA+AGG | 0.556945 | 5_3:-38695705 | None:intergenic |
| GGCAAATCCGTACAAATTAG+GGG | 0.558508 | 5_3:+38693612 | Msa0810350:five_prime_UTR |
| CTGCATGTCAGAGGTCCAAA+GGG | 0.558806 | 5_3:-38695704 | None:intergenic |
| AGCCTGATTGGGTGAGTTGG+TGG | 0.564969 | 5_3:-38695069 | None:intergenic |
| TGAATTGGATACATTGGGAG+AGG | 0.566946 | 5_3:+38695630 | Msa0810350:CDS |
| CTCTTCACGTGGTGTTGGTG+CGG | 0.568646 | 5_3:-38693819 | None:intergenic |
| AACTCTTCACTCTTCAGACA+GGG | 0.571026 | 5_3:+38696225 | Msa0810350:three_prime_UTR |
| TCCAAAGGGTGAGGTTATCA+CGG | 0.578031 | 5_3:-38695690 | None:intergenic |
| ACGAACTCTTCACGTGGTGT+TGG | 0.578137 | 5_3:-38693824 | None:intergenic |
| CCAAGCCTGATTGGGTGAGT+TGG | 0.579199 | 5_3:-38695072 | None:intergenic |
| CAACCAGATTCATCGATCCA+TGG | 0.582939 | 5_3:+38693793 | Msa0810350:exon |
| GAGTTCTTCGCTTTCGACGG+CGG | 0.587801 | 5_3:-38693918 | None:intergenic |
| GAACTTTCCAATATCTGTAA+CGG | 0.597556 | 5_3:+38694103 | Msa0810350:CDS |
| TGTCAGAGGTCCAAAGGGTG+AGG | 0.606809 | 5_3:-38695699 | None:intergenic |
| TTATGATATATGGATGCACT+GGG | 0.612064 | 5_3:+38695999 | Msa0810350:three_prime_UTR |
| AGATCTGTAATCACGAATCA+CGG | 0.615306 | 5_3:-38694068 | None:intergenic |
| GAATCACCAGAAGCAGCAGA+AGG | 0.617542 | 5_3:-38694157 | None:intergenic |
| TATCTTGCTGAGTTTAAGAG+TGG | 0.621733 | 5_3:+38694220 | Msa0810350:CDS |
| AGCCGAACGTTACGAAGAGA+TGG | 0.627906 | 5_3:+38693871 | Msa0810350:CDS |
| ACGATATGATTACTGCTCAT+CGG | 0.628913 | 5_3:-38695866 | None:intergenic |
| ATATCATACCTGCATGTCAG+AGG | 0.643750 | 5_3:-38695713 | None:intergenic |
| ATTGGGAGAGGAATCATACA+AGG | 0.653137 | 5_3:+38695642 | Msa0810350:CDS |
| GCAAATCCGTACAAATTAGG+GGG | 0.655231 | 5_3:+38693613 | Msa0810350:five_prime_UTR |
| GAGGAGGTTACGTTCTTCGA+CGG | 0.656962 | 5_3:-38693942 | None:intergenic |
| AAAGGGTGGATGTGAATGAG+AGG | 0.658640 | 5_3:-38693708 | None:intergenic |
| TAACATGTTCATCGTTACCA+CGG | 0.672519 | 5_3:-38694045 | None:intergenic |
| CCTTTCAAAACATGATACAG+AGG | 0.674464 | 5_3:-38695916 | None:intergenic |
| GAACAGAAGGAAGAAAGCCG+TGG | 0.676297 | 5_3:+38694028 | Msa0810350:CDS |
| TATTCATTAGGCTTTCGATG+AGG | 0.689894 | 5_3:+38695600 | Msa0810350:intron |
| ATGTAGACGAACTCTTCACG+TGG | 0.738511 | 5_3:-38693830 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTCAATTGTTTTTTTT+GGG | + | chr5_3:38693556-38693575 | Msa0810350:intron | 10.0% |
| !! | AAAACTGTAAAATATGAATT+TGG | + | chr5_3:38693523-38693542 | Msa0810350:five_prime_UTR | 15.0% |
| !! | AAACTGTAAAATATGAATTT+GGG | + | chr5_3:38693524-38693543 | Msa0810350:five_prime_UTR | 15.0% |
| !!! | CTTATTTCAATTGTTTTTTT+TGG | + | chr5_3:38693555-38693574 | Msa0810350:intron | 15.0% |
| !! | TTCAAATTCAAATGTATAAA+TGG | + | chr5_3:38693591-38693610 | Msa0810350:five_prime_UTR | 15.0% |
| !!! | TAATATGATTTGTGTTAATT+AGG | + | chr5_3:38694550-38694569 | Msa0810350:intron | 15.0% |
| !! | TCTTAATTAGGTTAAAATAA+TGG | + | chr5_3:38694661-38694680 | Msa0810350:intron | 15.0% |
| !!! | TGTTTATTTTTGGTTTAAAA+TGG | + | chr5_3:38694732-38694751 | Msa0810350:intron | 15.0% |
| !!! | ATTTTGGTTTATATTTTGTT+TGG | + | chr5_3:38695793-38695812 | Msa0810350:intron | 15.0% |
| !!! | TTTTGGTTTATATTTTGTTT+GGG | + | chr5_3:38695794-38695813 | Msa0810350:intron | 15.0% |
| !! | AAATTTCTATCATATGAAAT+TGG | + | chr5_3:38696087-38696106 | Msa0810350:three_prime_UTR | 15.0% |
| !!! | CATATTTTACAGTTTTCTTA+TGG | - | chr5_3:38693519-38693538 | None:intergenic | 20.0% |
| !! | GCAATATTTCAAACAAATAA+TGG | - | chr5_3:38694460-38694479 | None:intergenic | 20.0% |
| !!! | TTTAGTTTAGGGAAATTTAA+CGG | + | chr5_3:38694494-38694513 | Msa0810350:intron | 20.0% |
| !!! | TTTTGAAATGAGTTGAAAAT+AGG | + | chr5_3:38694705-38694724 | Msa0810350:intron | 20.0% |
| !!! | TTTGAAATGAGTTGAAAATA+GGG | + | chr5_3:38694706-38694725 | Msa0810350:intron | 20.0% |
| !!! | AATAGGGTATTGTTTATTTT+TGG | + | chr5_3:38694722-38694741 | Msa0810350:intron | 20.0% |
| !! | ACTACAAACTTTAATTGAAA+AGG | - | chr5_3:38695243-38695262 | None:intergenic | 20.0% |
| !!! | TTTTCAATTAAAGTTTGTAG+TGG | + | chr5_3:38695242-38695261 | Msa0810350:intron | 20.0% |
| !! | ATTCACATCAACATTAAAAA+GGG | - | chr5_3:38695450-38695469 | None:intergenic | 20.0% |
| !! | AATTCACATCAACATTAAAA+AGG | - | chr5_3:38695451-38695470 | None:intergenic | 20.0% |
| !! | TAATGAATATAGAAAAGAAC+AGG | - | chr5_3:38695589-38695608 | None:intergenic | 20.0% |
| !!! | TGTTCTTTTCTATATTCATT+AGG | + | chr5_3:38695588-38695607 | Msa0810350:intron | 20.0% |
| !!! | CATATTCTGTTTATTGATTT+TGG | + | chr5_3:38695777-38695796 | Msa0810350:intron | 20.0% |
| !!! | ATGGTCTATTTTATGATATA+TGG | + | chr5_3:38695989-38696008 | Msa0810350:three_prime_UTR | 20.0% |
| !!! | GGGTTAACTATTTTTAATTC+AGG | - | chr5_3:38693653-38693672 | None:intergenic | 25.0% |
| !!! | ATAGCAGTTTTTTGTTTTAG+TGG | - | chr5_3:38693683-38693702 | None:intergenic | 25.0% |
| ! | TTGTGAGAAATGTTTGTAAA+GGG | - | chr5_3:38693728-38693747 | None:intergenic | 25.0% |
| ! | TTTGTGAGAAATGTTTGTAA+AGG | - | chr5_3:38693729-38693748 | None:intergenic | 25.0% |
| ! | GAGATCTAACGTTATATTTA+TGG | + | chr5_3:38694314-38694333 | Msa0810350:intron | 25.0% |
| !! | TCTATAACTGACTTTAGTTT+AGG | + | chr5_3:38694482-38694501 | Msa0810350:intron | 25.0% |
| !! | CTATAACTGACTTTAGTTTA+GGG | + | chr5_3:38694483-38694502 | Msa0810350:intron | 25.0% |
| ! | GATTTGACGATTTCTTAATT+AGG | + | chr5_3:38694649-38694668 | Msa0810350:intron | 25.0% |
| !! | AAAATGGAAGTCTTATATGA+TGG | + | chr5_3:38694748-38694767 | Msa0810350:intron | 25.0% |
| !!! | TTTAATTTGACTCTGTTTGT+AGG | + | chr5_3:38695026-38695045 | Msa0810350:intron | 25.0% |
| ! | TATTCTAGATACCGAATAAT+GGG | + | chr5_3:38695176-38695195 | Msa0810350:intron | 25.0% |
| ! | ACTACAGACTTTAATTGAAA+AGG | - | chr5_3:38695304-38695323 | None:intergenic | 25.0% |
| !! | TTTTCAATTAAAGTCTGTAG+TGG | + | chr5_3:38695303-38695322 | Msa0810350:intron | 25.0% |
| ! | TAATTTCATTAACGTGTTTG+TGG | + | chr5_3:38695403-38695422 | Msa0810350:intron | 25.0% |
| ! | AATTTCATTAACGTGTTTGT+GGG | + | chr5_3:38695404-38695423 | Msa0810350:intron | 25.0% |
| !! | AATGTTGATGTGAATTTGTT+AGG | + | chr5_3:38695455-38695474 | Msa0810350:intron | 25.0% |
| !! | TGATTCTGTTCTGTTATTTA+TGG | + | chr5_3:38695543-38695562 | Msa0810350:intron | 25.0% |
| !!! | TTATATTTTGTTTGGGTTTC+AGG | + | chr5_3:38695801-38695820 | Msa0810350:intron | 25.0% |
| ! | AATGGAAGAACAAACTAAAA+TGG | - | chr5_3:38696025-38696044 | None:intergenic | 25.0% |
| !!! | CAGTTTTTTGTTTTAGTGGA+CGG | - | chr5_3:38693679-38693698 | None:intergenic | 30.0% |
| GAACTTTCCAATATCTGTAA+CGG | + | chr5_3:38694103-38694122 | Msa0810350:CDS | 30.0% | |
| AAGAATACCGTTACAGATAT+TGG | - | chr5_3:38694113-38694132 | None:intergenic | 30.0% | |
| ! | GTTTTCTACCTTAAGATGAA+AGG | + | chr5_3:38694184-38694203 | Msa0810350:CDS | 30.0% |
| GATAATCACCTTTCATCTTA+AGG | - | chr5_3:38694195-38694214 | None:intergenic | 30.0% | |
| AGATGAAAGGTGATTATCAT+AGG | + | chr5_3:38694197-38694216 | Msa0810350:CDS | 30.0% | |
| TTAGATCTCAGAGAAAAAGA+TGG | - | chr5_3:38694303-38694322 | None:intergenic | 30.0% | |
| ! | TTTAACGGAGTTTTTGTGTT+TGG | + | chr5_3:38694509-38694528 | Msa0810350:intron | 30.0% |
| TTGAACATAATCATGTACGT+CGG | - | chr5_3:38694923-38694942 | None:intergenic | 30.0% | |
| GTATTCTAGATACCGAATAA+TGG | + | chr5_3:38695175-38695194 | Msa0810350:intron | 30.0% | |
| TATTTGTTCCTCAACAAGTT+TGG | + | chr5_3:38695507-38695526 | Msa0810350:intron | 30.0% | |
| TATTGCTGAATTGGATACAT+TGG | + | chr5_3:38695624-38695643 | Msa0810350:CDS | 30.0% | |
| ATTGCTGAATTGGATACATT+GGG | + | chr5_3:38695625-38695644 | Msa0810350:CDS | 30.0% | |
| !!! | CTCTGTATCATGTTTTGAAA+GGG | + | chr5_3:38695917-38695936 | Msa0810350:three_prime_UTR | 30.0% |
| !!! | TCTGTATCATGTTTTGAAAG+GGG | + | chr5_3:38695918-38695937 | Msa0810350:three_prime_UTR | 30.0% |
| TTTATGATATATGGATGCAC+TGG | + | chr5_3:38695998-38696017 | Msa0810350:three_prime_UTR | 30.0% | |
| TTATGATATATGGATGCACT+GGG | + | chr5_3:38695999-38696018 | Msa0810350:three_prime_UTR | 30.0% | |
| !!! | TCAGCTGATTTTTTTCATTG+AGG | + | chr5_3:38696139-38696158 | Msa0810350:three_prime_UTR | 30.0% |
| ATGGCAAATCCGTACAAATT+AGG | + | chr5_3:38693610-38693629 | Msa0810350:five_prime_UTR | 35.0% | |
| TGGCAAATCCGTACAAATTA+GGG | + | chr5_3:38693611-38693630 | Msa0810350:five_prime_UTR | 35.0% | |
| ! | AATTTGCCCCCTAATTTGTA+CGG | - | chr5_3:38693622-38693641 | None:intergenic | 35.0% |
| TGAGAAATGTTTGTAAAGGG+TGG | - | chr5_3:38693725-38693744 | None:intergenic | 35.0% | |
| TAACATGTTCATCGTTACCA+CGG | - | chr5_3:38694048-38694067 | None:intergenic | 35.0% | |
| AGATCTGTAATCACGAATCA+CGG | - | chr5_3:38694071-38694090 | None:intergenic | 35.0% | |
| TATCTTGCTGAGTTTAAGAG+TGG | + | chr5_3:38694220-38694239 | Msa0810350:CDS | 35.0% | |
| ATATTGACACCTCTGATCAT+AGG | + | chr5_3:38694874-38694893 | Msa0810350:intron | 35.0% | |
| ! | GTGTTATTATTGTGTCCGTT+TGG | + | chr5_3:38694979-38694998 | Msa0810350:intron | 35.0% |
| CGCAAATCTTCAAATCCAAA+CGG | - | chr5_3:38694997-38695016 | None:intergenic | 35.0% | |
| ! | GAATACTAACCTGTTTTGCA+AGG | - | chr5_3:38695161-38695180 | None:intergenic | 35.0% |
| GAACATCATCTCCCATTATT+CGG | - | chr5_3:38695190-38695209 | None:intergenic | 35.0% | |
| AATGGGAGATGATGTTCATT+TGG | + | chr5_3:38695193-38695212 | Msa0810350:intron | 35.0% | |
| !! | GATGTGAATTTGTTAGGTTC+TGG | + | chr5_3:38695461-38695480 | Msa0810350:intron | 35.0% |
| TATTCATTAGGCTTTCGATG+AGG | + | chr5_3:38695600-38695619 | Msa0810350:intron | 35.0% | |
| ACGATATGATTACTGCTCAT+CGG | - | chr5_3:38695869-38695888 | None:intergenic | 35.0% | |
| CCTTTCAAAACATGATACAG+AGG | - | chr5_3:38695919-38695938 | None:intergenic | 35.0% | |
| !! | CCTCTGTATCATGTTTTGAA+AGG | + | chr5_3:38695916-38695935 | Msa0810350:three_prime_UTR | 35.0% |
| ! | GTTGATGCTACAGAGATTTT+AGG | + | chr5_3:38695961-38695980 | Msa0810350:three_prime_UTR | 35.0% |
| ! | ACAGAGATTTTAGGCATTCA+TGG | + | chr5_3:38695970-38695989 | Msa0810350:three_prime_UTR | 35.0% |
| TTCAGAAACACGTACACAAA+TGG | - | chr5_3:38696043-38696062 | None:intergenic | 35.0% | |
| GGCAAATCCGTACAAATTAG+GGG | + | chr5_3:38693612-38693631 | Msa0810350:five_prime_UTR | 40.0% | |
| GCAAATCCGTACAAATTAGG+GGG | + | chr5_3:38693613-38693632 | Msa0810350:five_prime_UTR | 40.0% | |
| !!! | TTTGTTTTAGTGGACGGTGA+GGG | - | chr5_3:38693673-38693692 | None:intergenic | 40.0% |
| !!! | TTTTGTTTTAGTGGACGGTG+AGG | - | chr5_3:38693674-38693693 | None:intergenic | 40.0% |
| TACTGCTTATAAAGCTGCTC+AGG | + | chr5_3:38694276-38694295 | Msa0810350:CDS | 40.0% | |
| !! | ATGCTACACCAAACTTGTTG+AGG | - | chr5_3:38695518-38695537 | None:intergenic | 40.0% |
| TGAATTGGATACATTGGGAG+AGG | + | chr5_3:38695630-38695649 | Msa0810350:CDS | 40.0% | |
| ATTGGGAGAGGAATCATACA+AGG | + | chr5_3:38695642-38695661 | Msa0810350:CDS | 40.0% | |
| ATATCATACCTGCATGTCAG+AGG | - | chr5_3:38695716-38695735 | None:intergenic | 40.0% | |
| ! | TTGTTTGGGTTTCAGGATGA+TGG | + | chr5_3:38695808-38695827 | Msa0810350:intron | 40.0% |
| !!! | TCATGTTTTGAAAGGGGAGA+AGG | + | chr5_3:38695924-38695943 | Msa0810350:three_prime_UTR | 40.0% |
| AAACTCTTCACTCTTCAGAC+AGG | + | chr5_3:38696224-38696243 | Msa0810350:three_prime_UTR | 40.0% | |
| AACTCTTCACTCTTCAGACA+GGG | + | chr5_3:38696225-38696244 | Msa0810350:three_prime_UTR | 40.0% | |
| AAAGGGTGGATGTGAATGAG+AGG | - | chr5_3:38693711-38693730 | None:intergenic | 45.0% | |
| GGATCGATGAATCTGGTTGA+AGG | - | chr5_3:38693792-38693811 | None:intergenic | 45.0% | |
| CAACCAGATTCATCGATCCA+TGG | + | chr5_3:38693793-38693812 | Msa0810350:exon | 45.0% | |
| TTGCCATGGATCGATGAATC+TGG | - | chr5_3:38693799-38693818 | None:intergenic | 45.0% | |
| ATGTAGACGAACTCTTCACG+TGG | - | chr5_3:38693833-38693852 | None:intergenic | 45.0% | |
| ACGTGAAGAGTTCGTCTACA+TGG | + | chr5_3:38693832-38693851 | Msa0810350:CDS | 45.0% | |
| ! | TTCGTAACGTTCGGCTTGTT+CGG | - | chr5_3:38693867-38693886 | None:intergenic | 45.0% |
| GACCATCTCTTCGTAACGTT+CGG | - | chr5_3:38693876-38693895 | None:intergenic | 45.0% | |
| ! | CGAAGAGATGGTCGATTTCA+TGG | + | chr5_3:38693883-38693902 | Msa0810350:CDS | 45.0% |
| ! | GATGACGTTTTTGTAGGCGA+CGG | - | chr5_3:38693969-38693988 | None:intergenic | 45.0% |
| GTCGCCTACAAAAACGTCAT+CGG | + | chr5_3:38693968-38693987 | Msa0810350:CDS | 45.0% | |
| ! | TGCTCCGATGACGTTTTTGT+AGG | - | chr5_3:38693975-38693994 | None:intergenic | 45.0% |
| CATCTCTTCCATCGAACAGA+AGG | + | chr5_3:38694015-38694034 | Msa0810350:CDS | 45.0% | |
| GCTTTCTTCCTTCTGTTCGA+TGG | - | chr5_3:38694026-38694045 | None:intergenic | 45.0% | |
| ! | TTGATTCCTTCTGCTGCTTC+TGG | + | chr5_3:38694151-38694170 | Msa0810350:CDS | 45.0% |
| ! | TGCTGCTTCTGGTGATTCTA+AGG | + | chr5_3:38694162-38694181 | Msa0810350:CDS | 45.0% |
| CGATGAGGCTATTGCTGAAT+TGG | + | chr5_3:38695615-38695634 | Msa0810350:CDS | 45.0% | |
| TCCAAAGGGTGAGGTTATCA+CGG | - | chr5_3:38695693-38695712 | None:intergenic | 45.0% | |
| ATCAAAGAAGCCGCACCAAA+AGG | + | chr5_3:38695841-38695860 | Msa0810350:CDS | 45.0% | |
| ACGAACTCTTCACGTGGTGT+TGG | - | chr5_3:38693827-38693846 | None:intergenic | 50.0% | |
| AGCCGAACGTTACGAAGAGA+TGG | + | chr5_3:38693871-38693890 | Msa0810350:CDS | 50.0% | |
| GGTGAGTTCTTCGCTTTCGA+CGG | - | chr5_3:38693924-38693943 | None:intergenic | 50.0% | |
| GAGGAGGTTACGTTCTTCGA+CGG | - | chr5_3:38693945-38693964 | None:intergenic | 50.0% | |
| GAACAGAAGGAAGAAAGCCG+TGG | + | chr5_3:38694028-38694047 | Msa0810350:CDS | 50.0% | |
| GAATCACCAGAAGCAGCAGA+AGG | - | chr5_3:38694160-38694179 | None:intergenic | 50.0% | |
| TACCACCAACTCACCCAATC+AGG | + | chr5_3:38695067-38695086 | Msa0810350:CDS | 50.0% | |
| GAGCAAGACCAAGCCTGATT+GGG | - | chr5_3:38695083-38695102 | None:intergenic | 50.0% | |
| AGAGCAAGACCAAGCCTGAT+TGG | - | chr5_3:38695084-38695103 | None:intergenic | 50.0% | |
| AACTCTCCTGATCGTGCTTG+TGG | + | chr5_3:38695135-38695154 | Msa0810350:CDS | 50.0% | |
| ! | TGCTTGTGGCCTTGCAAAAC+AGG | + | chr5_3:38695149-38695168 | Msa0810350:CDS | 50.0% |
| ! | TTGTGGGAGCTTTAGTGCAG+TGG | + | chr5_3:38695420-38695439 | Msa0810350:intron | 50.0% |
| ! | TGTGGGAGCTTTAGTGCAGT+GGG | + | chr5_3:38695421-38695440 | Msa0810350:intron | 50.0% |
| TCCGTGATAACCTCACCCTT+TGG | + | chr5_3:38695689-38695708 | Msa0810350:CDS | 50.0% | |
| CTGCATGTCAGAGGTCCAAA+GGG | - | chr5_3:38695707-38695726 | None:intergenic | 50.0% | |
| !! | CTCTTCACGTGGTGTTGGTG+CGG | - | chr5_3:38693822-38693841 | None:intergenic | 55.0% |
| GAGTTCTTCGCTTTCGACGG+CGG | - | chr5_3:38693921-38693940 | None:intergenic | 55.0% | |
| ! | TTTTGTAGGCGACGGAGAGG+AGG | - | chr5_3:38693961-38693980 | None:intergenic | 55.0% |
| ! | CGTTTTTGTAGGCGACGGAG+AGG | - | chr5_3:38693964-38693983 | None:intergenic | 55.0% |
| CCAGACACGCCTATGATCAG+AGG | - | chr5_3:38694886-38694905 | None:intergenic | 55.0% | |
| CCTCTGATCATAGGCGTGTC+TGG | + | chr5_3:38694883-38694902 | Msa0810350:intron | 55.0% | |
| ! | AGGCGTGTCTGGTTTCTGAC+AGG | + | chr5_3:38694894-38694913 | Msa0810350:intron | 55.0% |
| ! | AGCCTGATTGGGTGAGTTGG+TGG | - | chr5_3:38695072-38695091 | None:intergenic | 55.0% |
| CCAAGCCTGATTGGGTGAGT+TGG | - | chr5_3:38695075-38695094 | None:intergenic | 55.0% | |
| CCAACTCACCCAATCAGGCT+TGG | + | chr5_3:38695072-38695091 | Msa0810350:CDS | 55.0% | |
| TGTCAGAGGTCCAAAGGGTG+AGG | - | chr5_3:38695702-38695721 | None:intergenic | 55.0% | |
| CCTGCATGTCAGAGGTCCAA+AGG | - | chr5_3:38695708-38695727 | None:intergenic | 55.0% | |
| CCTTTGGACCTCTGACATGC+AGG | + | chr5_3:38695705-38695724 | Msa0810350:CDS | 55.0% | |
| ! | TACTGCTCATCGGCGCCTTT+TGG | - | chr5_3:38695859-38695878 | None:intergenic | 55.0% |
| !! | TGGTGTTGGTGCGGTTGCCA+TGG | - | chr5_3:38693813-38693832 | None:intergenic | 60.0% |
| TTCTTCGCTTTCGACGGCGG+CGG | - | chr5_3:38693918-38693937 | None:intergenic | 60.0% | |
| TCGGAGCAAGACGTGCTTCG+TGG | + | chr5_3:38693987-38694006 | Msa0810350:CDS | 60.0% | |
| GCAAGGCCACAAGCACGATC+AGG | - | chr5_3:38695144-38695163 | None:intergenic | 60.0% | |
| ! | CTCATCGGCGCCTTTTGGTG+CGG | - | chr5_3:38695854-38695873 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 38693509 | 38696337 | 38693509 | ID=Msa0810350;Name=Msa0810350 |
| chr5_3 | mRNA | 38693509 | 38696337 | 38693509 | ID=Msa0810350-mRNA-1;Parent=Msa0810350;Name=Msa0810350-mRNA-1;_AED=0.05;_eAED=0.05;_QI=282|1|1|1|0.75|0.6|5|458|260 |
| chr5_3 | exon | 38693509 | 38693555 | 38693509 | ID=Msa0810350-mRNA-1:exon:11767;Parent=Msa0810350-mRNA-1 |
| chr5_3 | exon | 38693577 | 38694297 | 38693577 | ID=Msa0810350-mRNA-1:exon:11768;Parent=Msa0810350-mRNA-1 |
| chr5_3 | exon | 38695048 | 38695170 | 38695048 | ID=Msa0810350-mRNA-1:exon:11769;Parent=Msa0810350-mRNA-1 |
| chr5_3 | exon | 38695610 | 38695726 | 38695610 | ID=Msa0810350-mRNA-1:exon:11770;Parent=Msa0810350-mRNA-1 |
| chr5_3 | exon | 38695823 | 38696337 | 38695823 | ID=Msa0810350-mRNA-1:exon:11771;Parent=Msa0810350-mRNA-1 |
| chr5_3 | five_prime_UTR | 38693509 | 38693555 | 38693509 | ID=Msa0810350-mRNA-1:five_prime_utr;Parent=Msa0810350-mRNA-1 |
| chr5_3 | five_prime_UTR | 38693577 | 38693811 | 38693577 | ID=Msa0810350-mRNA-1:five_prime_utr;Parent=Msa0810350-mRNA-1 |
| chr5_3 | CDS | 38693812 | 38694297 | 38693812 | ID=Msa0810350-mRNA-1:cds;Parent=Msa0810350-mRNA-1 |
| chr5_3 | CDS | 38695048 | 38695170 | 38695048 | ID=Msa0810350-mRNA-1:cds;Parent=Msa0810350-mRNA-1 |
| chr5_3 | CDS | 38695610 | 38695726 | 38695610 | ID=Msa0810350-mRNA-1:cds;Parent=Msa0810350-mRNA-1 |
| chr5_3 | CDS | 38695823 | 38695879 | 38695823 | ID=Msa0810350-mRNA-1:cds;Parent=Msa0810350-mRNA-1 |
| chr5_3 | three_prime_UTR | 38695880 | 38696337 | 38695880 | ID=Msa0810350-mRNA-1:three_prime_utr;Parent=Msa0810350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
