AlfalfaGEDB | Msa0825530

M. sativa cultivar zhongmu-4 / Msa0825530

KEGG: K01689
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF03952.19

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0825530	XP_003617922.1	96.907	485	3	1	1	485	1	473	0.0	959

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0825530	sp\|Q9ZW34\|ENO3_ARATH	80.165	484	84	1	1	484	1	472	0.0	809

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0825530	G7K4W1	96.907	485	3	1	1	485	1	473	0.0	959

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0047070	Msa0825530	0.822350	2.482476e-53	-8.615850e-47
Msa0094130	Msa0825530	0.806308	8.761102e-50	-8.615850e-47
Msa0146260	Msa0825530	0.801395	9.188548e-49	-8.615850e-47
Msa0146280	Msa0825530	0.800122	1.671119e-48	-8.615850e-47
Msa0225460	Msa0825530	0.824337	8.524203e-54	-8.615850e-47
Msa0225680	Msa0825530	0.838551	2.688193e-57	-8.615850e-47
Msa0225750	Msa0825530	0.809991	1.439221e-50	-8.615850e-47
Msa0255090	Msa0825530	0.837542	4.889727e-57	-8.615850e-47
Msa0259380	Msa0825530	0.842307	2.801430e-58	-8.615850e-47
Msa0267110	Msa0825530	0.804666	1.936314e-49	-8.615850e-47

Showing 1 to 10 of 54 entries

Previous1 2 3 4 5 6Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0825530	MtrunA17_Chr5g0447301	98.905	274	3	0	1	274	1	274	0.0	557
Msa0825530	MtrunA17_Chr7g0265741	57.778	450	167	8	45	484	2	438	2.16e-177	505
Msa0825530	MtrunA17_Chr6g0476311	58.129	449	164	8	47	484	5	440	8.76e-177	503
Msa0825530	MtrunA17_Chr2g0307671	57.014	442	175	4	44	484	62	489	4.36e-174	498
Msa0825530	MtrunA17_Chr5g0447311	95.495	222	10	0	264	485	8	229	1.44e-154	438

Showing 1 to 5 of 5 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0825530	AT2G29560.1	80.165	484	84	1	1	484	1	472	0.0	809
Msa0825530	AT2G36530.1	57.428	451	169	8	45	485	2	439	5.98e-176	501
Msa0825530	AT1G74030.1	56.954	453	173	6	40	484	37	475	3.20e-174	498
Msa0825530	AT2G36530.2	56.512	430	164	8	66	485	12	428	7.88e-164	470

Showing 1 to 4 of 4 entries

Previous1Next

Find 125 sgRNAs with CRISPR-Local

Find 562 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATGCTGGAAATAATC+TGG	0.443130	5_3:-65407159	Msa0825530:CDS
AAAATATCTGAGGCGCTGAT+TGG	0.482231	5_3:-65408391	Msa0825530:CDS
AAAATCTAATGGCGCAATTG+AGG	0.496254	5_3:+65400733	None:intergenic
AAACAGTTGCTAAAATCTAA+TGG	0.466487	5_3:+65400722	None:intergenic
AAAGCAGGAACAGGAAGCAC+TGG	0.490991	5_3:+65407200	None:intergenic
AAAGCAGGCGCTCCTTGCAG+AGG	0.636542	5_3:-65401658	Msa0825530:CDS
AAAGCTTGCCTGGAGACATT+AGG	0.436617	5_3:+65405651	None:intergenic
AAAGGTGTATATCTAGGAAA+CGG	0.559992	5_3:-65408445	Msa0825530:CDS
AAATTCTGTCCCGACGTTTG+AGG	0.413766	5_3:+65403224	None:intergenic
AACAGGCAAAGGAAGCGCAT+TGG	0.543307	5_3:-65401765	Msa0825530:CDS

Showing 1 to 10 of 125 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGATATTACGATGAAGAGAA+CGG	+	chr5_3:65400926-65400945	None:intergenic	30.0%
CAGTCGAATCATATGAAAAA+AGG	-	chr5_3:65401020-65401039	Msa0825530:intron	30.0%
TACAAATCAACTTCAACAGT+TGG	+	chr5_3:65401104-65401123	None:intergenic	30.0%
GAAGTGATTTATGTTTGGAT+AGG	-	chr5_3:65401376-65401395	Msa0825530:intron	30.0%
TTAAACCATAATAACTAGCG+GGG	-	chr5_3:65401545-65401564	Msa0825530:intron	30.0%
TCGATGAATGTGTATAAGTT+TGG	-	chr5_3:65401614-65401633	Msa0825530:intron	30.0%
AACTTGAAGCTAGAATTTGT+AGG	+	chr5_3:65401789-65401808	None:intergenic	30.0%
AACATTGAAAACACATCCAT+AGG	-	chr5_3:65401899-65401918	Msa0825530:intron	30.0%
ATTACTAATAAAAGAGGGAC+TGG	-	chr5_3:65402018-65402037	Msa0825530:intron	30.0%
TTACTAATAAAAGAGGGACT+GGG	-	chr5_3:65402019-65402038	Msa0825530:intron	30.0%

Showing 1 to 10 of 562 entries

Previous1 2 3 4 5…57Next

Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	65400637	65410672	65400637	ID=Msa0825530;Name=Msa0825530
chr5_3	mRNA	65400637	65410672	65400637	ID=Msa0825530-mRNA-1;Parent=Msa0825530;Name=Msa0825530-mRNA-1;_AED=0.10;_eAED=0.10;_QI=195\|0.91\|0.92\|1\|1\|1\|13\|286\|485
chr5_3	exon	65400637	65400988	65400637	ID=Msa0825530-mRNA-1:exon:20539;Parent=Msa0825530-mRNA-1
chr5_3	exon	65401633	65401830	65401633	ID=Msa0825530-mRNA-1:exon:20538;Parent=Msa0825530-mRNA-1
chr5_3	exon	65402301	65402387	65402301	ID=Msa0825530-mRNA-1:exon:20537;Parent=Msa0825530-mRNA-1
chr5_3	exon	65402992	65403077	65402992	ID=Msa0825530-mRNA-1:exon:20536;Parent=Msa0825530-mRNA-1
chr5_3	exon	65403177	65403275	65403177	ID=Msa0825530-mRNA-1:exon:20535;Parent=Msa0825530-mRNA-1
chr5_3	exon	65404555	65404658	65404555	ID=Msa0825530-mRNA-1:exon:20534;Parent=Msa0825530-mRNA-1
chr5_3	exon	65405624	65405736	65405624	ID=Msa0825530-mRNA-1:exon:20533;Parent=Msa0825530-mRNA-1
chr5_3	exon	65405958	65406038	65405958	ID=Msa0825530-mRNA-1:exon:20532;Parent=Msa0825530-mRNA-1
chr5_3	exon	65407151	65407267	65407151	ID=Msa0825530-mRNA-1:exon:20531;Parent=Msa0825530-mRNA-1
chr5_3	exon	65407374	65407445	65407374	ID=Msa0825530-mRNA-1:exon:20530;Parent=Msa0825530-mRNA-1
chr5_3	exon	65408324	65408498	65408324	ID=Msa0825530-mRNA-1:exon:20529;Parent=Msa0825530-mRNA-1
chr5_3	exon	65410132	65410286	65410132	ID=Msa0825530-mRNA-1:exon:20528;Parent=Msa0825530-mRNA-1
chr5_3	exon	65410373	65410672	65410373	ID=Msa0825530-mRNA-1:exon:20527;Parent=Msa0825530-mRNA-1
chr5_3	five_prime_UTR	65410478	65410672	65410478	ID=Msa0825530-mRNA-1:five_prime_utr;Parent=Msa0825530-mRNA-1
chr5_3	CDS	65410373	65410477	65410373	ID=Msa0825530-mRNA-1:cds;Parent=Msa0825530-mRNA-1
chr5_3	CDS	65410132	65410286	65410132	ID=Msa0825530-mRNA-1:cds;Parent=Msa0825530-mRNA-1
chr5_3	CDS	65408324	65408498	65408324	ID=Msa0825530-mRNA-1:cds;Parent=Msa0825530-mRNA-1
chr5_3	CDS	65407374	65407445	65407374	ID=Msa0825530-mRNA-1:cds;Parent=Msa0825530-mRNA-1
chr5_3	CDS	65407151	65407267	65407151	ID=Msa0825530-mRNA-1:cds;Parent=Msa0825530-mRNA-1
chr5_3	CDS	65405958	65406038	65405958	ID=Msa0825530-mRNA-1:cds;Parent=Msa0825530-mRNA-1
chr5_3	CDS	65405624	65405736	65405624	ID=Msa0825530-mRNA-1:cds;Parent=Msa0825530-mRNA-1
chr5_3	CDS	65404555	65404658	65404555	ID=Msa0825530-mRNA-1:cds;Parent=Msa0825530-mRNA-1
chr5_3	CDS	65403177	65403275	65403177	ID=Msa0825530-mRNA-1:cds;Parent=Msa0825530-mRNA-1
chr5_3	CDS	65402992	65403077	65402992	ID=Msa0825530-mRNA-1:cds;Parent=Msa0825530-mRNA-1
chr5_3	CDS	65402301	65402387	65402301	ID=Msa0825530-mRNA-1:cds;Parent=Msa0825530-mRNA-1
chr5_3	CDS	65401633	65401830	65401633	ID=Msa0825530-mRNA-1:cds;Parent=Msa0825530-mRNA-1
chr5_3	CDS	65400923	65400988	65400923	ID=Msa0825530-mRNA-1:cds;Parent=Msa0825530-mRNA-1
chr5_3	three_prime_UTR	65400637	65400922	65400637	ID=Msa0825530-mRNA-1:three_prime_utr;Parent=Msa0825530-mRNA-1

Gene Sequence

>Msa0825530

ATGTCCGTTCAAGAATATCTTGATAAATACATGCTTTCCCGTAAACTCGAAGACGCCGTCAATGCCGCCGTCAGAGCCAAAACCTCCGACCCCGTTCTCTTCATCTCGAATCATATGAAAAAAGGAGTACAATCGGTGATTACGAAAGTAAAAGCGAGGCAAATTCTTGATAGTAGAGGAATTCCAACTGTTGAAGTTGATTTGTATACTAACAAAGCTATGTTTCGTGCTTCTGTTCCATCTGGAAACTCCACTGGCATGTATGAGGCTGTTGAGTTACGGGATGGGGACAAAGGTGTATATCTAGGAAACGGTGTTGCTAAAGCTGTTAAAAATATAAATGAGAAAATATCTGAGGCGCTGATTGGTATGGATCCAACACTGCAGTCCCAGATTGATCATGCTATGATAGACCTTGACAAAACAGAGAAAAAGGGGGAACTTGGGGCAAATGCTATATTAGCTGTGTCCATTGCTGCATGTAAAGCTGGGGCTGCTGAAAAGGAAGTTCCACTCTACAAGCACATCGCTGACCTGTCTGGAAAAACTAACCCAGTGCTTCCTGTTCCTGCTTTTACTGTTATAAGCGGTGGAAAACATGCTGGAAATAATCTGGCAATTGAGGAAATCATGATTCTTCCAATTGGAGCAAGCAGATTTGATGAAGCACTGCGAATGGGCTCTGAGACCTATCATCATTTAAAGGCTGTTATTACAGAAAAATGTGGGCCACATAACTGTAATGTCGGTGAAGATGGTGGCTTTGCTCCTAATGTCTCCAGGCAAGCTTTTTATCTTAAACTCTTTGGATTTGTACACTTTAGAGAAGCCCTGGATCTTGTAAAGGAGGCCATTAGTAGAACCGGTTATGATGAGAAAATAAAGATCGCTCTTGACGTCGCTGGTACAAATTTTTGTATTGGTAAAAGATATGATCTGGACTTTAAATCTCCTCAAACGTCGGGACAGAATTTTAAGTCAGCAGAGGATATGATAGAATTGTACAAGGAACTATGTACCGAATACCCAATTGTATCAATAGAAGATCCATTTGACAAGGAAGATTGGGAACATATCAAGTATATCTCAAGCCTTGGAATTTGCCAGGTAGTAGGGGATGATCTCTTGATGTCTAATGCAAAGCGCATTGAGAGAGCAGTGACTGAGTCTGCTTGTAATGCTCTTCTTCTTAAGGTCAACCAAGTTGGAACTGTGACCGAGGTCATTGAAGTGGTCAAACAGGCAAAGGAAGCGCATTGGGGGGTGGTGACATCTCACAGAAGTGGAGAAACTGTAGACTCTTTCATAGCTGATTTATCCGTTGGCCTTGCTGTTGGTCAGATTAAAGCAGGCGCTCCTTGCAGAGGAGAGCGATTAGAAAAATACAACCAGTTACTTCGGATTGAGGAAGAGCTTGGAGATCAAGCAGTTTATGCTGGTGAAGATTGGAGGCAGTAA

Protein sequence

>Msa0825530

MSVQEYLDKYMLSRKLEDAVNAAVRAKTSDPVLFISNHMKKGVQSVITKVKARQILDSRGIPTVEVDLYTNKAMFRASVPSGNSTGMYEAVELRDGDKGVYLGNGVAKAVKNINEKISEALIGMDPTLQSQIDHAMIDLDKTEKKGELGANAILAVSIAACKAGAAEKEVPLYKHIADLSGKTNPVLPVPAFTVISGGKHAGNNLAIEEIMILPIGASRFDEALRMGSETYHHLKAVITEKCGPHNCNVGEDGGFAPNVSRQAFYLKLFGFVHFREALDLVKEAISRTGYDEKIKIALDVAGTNFCIGKRYDLDFKSPQTSGQNFKSAEDMIELYKELCTEYPIVSIEDPFDKEDWEHIKYISSLGICQVVGDDLLMSNAKRIERAVTESACNALLLKVNQVGTVTEVIEVVKQAKEAHWGVVTSHRSGETVDSFIADLSVGLAVGQIKAGAPCRGERLEKYNQLLRIEEELGDQAVYAGEDWRQ*