Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348810 | GAU28233.1 | 96.059 | 406 | 16 | 0 | 1 | 406 | 88 | 493 | 0.0 | 809 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348810 | sp|Q0AW31|PUR9_SYNWW | 46.860 | 414 | 203 | 9 | 1 | 406 | 102 | 506 | 3.16e-115 | 348 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348810 | A0A2Z6ME11 | 96.059 | 406 | 16 | 0 | 1 | 406 | 88 | 493 | 0.0 | 809 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032430 | Msa0348810 | 0.806345 | 8.604482e-50 | -8.615850e-47 |
| Msa0040690 | Msa0348810 | 0.812049 | 5.155502e-51 | -8.615850e-47 |
| Msa0074320 | Msa0348810 | 0.819509 | 1.118766e-52 | -8.615850e-47 |
| Msa0094470 | Msa0348810 | 0.812002 | 5.277837e-51 | -8.615850e-47 |
| Msa0138920 | Msa0348810 | 0.850725 | 1.409872e-60 | -8.615850e-47 |
| Msa0172070 | Msa0348810 | 0.813410 | 2.595734e-51 | -8.615850e-47 |
| Msa0180020 | Msa0348810 | 0.801282 | 9.691710e-49 | -8.615850e-47 |
| Msa0187690 | Msa0348810 | 0.816972 | 4.197147e-52 | -8.615850e-47 |
| Msa0187930 | Msa0348810 | 0.821097 | 4.839380e-53 | -8.615850e-47 |
| Msa0194540 | Msa0348810 | 0.825125 | 5.560175e-54 | -8.615850e-47 |
| Msa0244780 | Msa0348810 | 0.822814 | 1.936250e-53 | -8.615850e-47 |
| Msa0268130 | Msa0348810 | 0.822760 | 1.994114e-53 | -8.615850e-47 |
| Msa0294160 | Msa0348810 | 0.803352 | 3.631276e-49 | -8.615850e-47 |
| Msa0298990 | Msa0348810 | 0.822665 | 2.098204e-53 | -8.615850e-47 |
| Msa0318700 | Msa0348810 | 0.802132 | 6.486592e-49 | -8.615850e-47 |
| Msa0348810 | Msa0391320 | 0.809641 | 1.711730e-50 | -8.615850e-47 |
| Msa0348810 | Msa0490800 | 0.886444 | 3.400868e-72 | -8.615850e-47 |
| Msa0348810 | Msa0526540 | 0.814326 | 1.631152e-51 | -8.615850e-47 |
| Msa0348810 | Msa0571920 | 0.832885 | 7.321547e-56 | -8.615850e-47 |
| Msa0348810 | Msa0576690 | 0.828328 | 9.554175e-55 | -8.615850e-47 |
| Msa0348810 | Msa0576940 | 0.828507 | 8.650286e-55 | -8.615850e-47 |
| Msa0348810 | Msa0620990 | 0.803995 | 2.671818e-49 | -8.615850e-47 |
| Msa0348810 | Msa0643570 | 0.810562 | 1.083958e-50 | -8.615850e-47 |
| Msa0348810 | Msa0677290 | 0.831034 | 2.098402e-55 | -8.615850e-47 |
| Msa0348810 | Msa0825530 | 0.814710 | 1.341240e-51 | -8.615850e-47 |
| Msa0348810 | Msa1019240 | 0.826534 | 2.573913e-54 | -8.615850e-47 |
| Msa0348810 | Msa1019260 | 0.827158 | 1.825358e-54 | -8.615850e-47 |
| Msa0348810 | Msa1043690 | 0.800391 | 1.473198e-48 | -8.615850e-47 |
| Msa0348810 | Msa1104140 | 0.827316 | 1.673559e-54 | -8.615850e-47 |
| Msa0348810 | Msa1104210 | 0.817836 | 2.682052e-52 | -8.615850e-47 |
| Msa0348810 | Msa1119200 | 0.818770 | 1.647692e-52 | -8.615850e-47 |
| Msa0348810 | Msa1126510 | 0.807901 | 4.029677e-50 | -8.615850e-47 |
| Msa0348810 | Msa1143650 | 0.808617 | 2.836633e-50 | -8.615850e-47 |
| Msa0348810 | Msa1166330 | 0.820240 | 7.613936e-53 | -8.615850e-47 |
| Msa0348810 | Msa1166340 | 0.824058 | 9.915948e-54 | -8.615850e-47 |
| Msa0348810 | Msa1166860 | 0.816709 | 4.809119e-52 | -8.615850e-47 |
| Msa0348810 | Msa1202460 | 0.802473 | 5.518760e-49 | -8.615850e-47 |
| Msa0348810 | Msa1218140 | 0.845563 | 3.756765e-59 | -8.615850e-47 |
| Msa0348810 | Msa1225700 | 0.807488 | 4.932097e-50 | -8.615850e-47 |
| Msa0348810 | Msa1252190 | 0.835764 | 1.387388e-56 | -8.615850e-47 |
| Msa0348810 | Msa1292830 | 0.808668 | 2.765417e-50 | -8.615850e-47 |
| Msa0348810 | Msa1363330 | 0.813448 | 2.546678e-51 | -8.615850e-47 |
| Msa0348810 | Msa1374120 | 0.806442 | 8.211390e-50 | -8.615850e-47 |
| Msa0348810 | Msa1379760 | 0.803707 | 3.065238e-49 | -8.615850e-47 |
| Msa0348810 | Msa1384650 | 0.814705 | 1.344690e-51 | -8.615850e-47 |
| Msa0348810 | Msa1386600 | 0.813076 | 3.072948e-51 | -8.615850e-47 |
| Msa0348810 | Msa1389950 | 0.800693 | 1.278347e-48 | -8.615850e-47 |
| Msa0348810 | Msa1394290 | 0.816479 | 5.413389e-52 | -8.615850e-47 |
| Msa0348810 | Msa1401390 | 0.801064 | 1.074057e-48 | -8.615850e-47 |
| Msa0348810 | Msa1406040 | 0.827287 | 1.700277e-54 | -8.615850e-47 |
| Msa0348810 | Msa1448690 | 0.822813 | 1.937558e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348810 | MtrunA17_Chr5g0446531 | 92.217 | 424 | 15 | 2 | 1 | 406 | 181 | 604 | 0.0 | 801 |
| Msa0348810 | MtrunA17_Chr3g0081851 | 92.891 | 422 | 14 | 1 | 1 | 406 | 173 | 594 | 0.0 | 788 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0348810 | AT2G35040.1 | 82.783 | 424 | 55 | 3 | 1 | 406 | 173 | 596 | 0.0 | 723 |
| Msa0348810 | AT2G35040.2 | 82.783 | 424 | 55 | 3 | 1 | 406 | 122 | 545 | 0.0 | 722 |
Find 102 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGGTGGCATTGAATTTA+AGG | 0.096007 | 3_1:+11638869 | Msa0348810:CDS |
| GCCCTTCTAGAATTTCTTAA+AGG | 0.163288 | 3_1:+11639212 | Msa0348810:CDS |
| TTGTCTGAGTGAAAGCTTTC+CGG | 0.208778 | 3_1:-11641541 | None:intergenic |
| AAAGCTGGAGCTGCTGTTAA+AGG | 0.282644 | 3_1:+11641894 | Msa0348810:CDS |
| TGTCTGAGTGAAAGCTTTCC+GGG | 0.284025 | 3_1:-11641540 | None:intergenic |
| TTGCAGGACAATTGTATGTT+AGG | 0.284103 | 3_1:+11641819 | Msa0348810:intron |
| TTCCTTTAAGAAATTCTAGA+AGG | 0.331486 | 3_1:-11639214 | None:intergenic |
| TTACCAATGTGAGGCACTTC+AGG | 0.340128 | 3_1:+11642673 | Msa0348810:CDS |
| GCAGAATCACAAGGATGTTT+TGG | 0.343642 | 3_1:+11639163 | Msa0348810:intron |
| GCACCGAGCTATACAGAAAA+AGG | 0.345990 | 3_1:+11641456 | Msa0348810:CDS |
| CTCAAAAGTATTCTCCGTTA+TGG | 0.346364 | 3_1:+11640631 | Msa0348810:CDS |
| AGTGATGCTTTCTTCCCCTT+TGG | 0.367102 | 3_1:+11641930 | Msa0348810:CDS |
| TCCGCTACACATCAATGATA+TGG | 0.383847 | 3_1:-11642932 | None:intergenic |
| CTTAAACTCTCGACACGGTT+TGG | 0.394511 | 3_1:-11641858 | None:intergenic |
| TATGATAAAGTTACTTCAGC+TGG | 0.406432 | 3_1:+11638852 | Msa0348810:CDS |
| AACTCTCGACACGGTTTGGT+TGG | 0.421175 | 3_1:-11641854 | None:intergenic |
| TTGACATCAAGTAGGTCATA+AGG | 0.423102 | 3_1:+11642766 | Msa0348810:three_prime_UTR |
| TGGTGGAGGGTGGTTAGCTC+AGG | 0.428803 | 3_1:+11641566 | Msa0348810:CDS |
| GGACAATTGTATGTTAGGTA+TGG | 0.442803 | 3_1:+11641824 | Msa0348810:intron |
| ATCCTTGTCTCGCCATCGGT+CGG | 0.446798 | 3_1:-11641414 | None:intergenic |
| TTAAGAAATTCTAGAAGGGC+AGG | 0.450249 | 3_1:-11639209 | None:intergenic |
| TGCTGTTAAAGGAGCAGCCT+TGG | 0.451097 | 3_1:+11641905 | Msa0348810:CDS |
| ATAGACTGTTGTAATAAGTA+TGG | 0.457258 | 3_1:+11642636 | Msa0348810:CDS |
| TCCTTGTCTCGCCATCGGTC+GGG | 0.459470 | 3_1:-11641413 | None:intergenic |
| GAAACCAAGACGAACAGTTC+AGG | 0.470254 | 3_1:+11639234 | Msa0348810:CDS |
| AGAATAGCAATGAGGAAAGC+TGG | 0.471856 | 3_1:+11641879 | Msa0348810:CDS |
| CTGCAGTAGCTGAGTGGCTA+TGG | 0.471931 | 3_1:+11639303 | Msa0348810:CDS |
| TTGTTAAATAGCGGCTATAG+TGG | 0.476040 | 3_1:+11642815 | Msa0348810:three_prime_UTR |
| ACTTGGATGCCGATGCTGCT+TGG | 0.477739 | 3_1:+11640938 | Msa0348810:CDS |
| TTTAGCTTAAAATAGTCAAA+TGG | 0.481877 | 3_1:+11642895 | Msa0348810:three_prime_UTR |
| CACCTTCCCATGGTGTTGGA+TGG | 0.481984 | 3_1:-11640731 | None:intergenic |
| TTAGCCTGAACTGTTCGTCT+TGG | 0.483032 | 3_1:-11639238 | None:intergenic |
| CTTTGCAGCAGCTCGAATCA+TGG | 0.485084 | 3_1:-11638925 | None:intergenic |
| AGGTGGTAGTATAAGAGATC+AGG | 0.489865 | 3_1:+11642608 | Msa0348810:CDS |
| AGTGGCTATGGAAGGAAAGT+GGG | 0.490884 | 3_1:+11639315 | Msa0348810:CDS |
| CTCGCACCTTCCCATGGTGT+TGG | 0.495154 | 3_1:-11640735 | None:intergenic |
| AAGGATGTTCTATGAAATAG+TGG | 0.499945 | 3_1:+11641431 | Msa0348810:CDS |
| GCAGCAGCTCGAATCATGGC+TGG | 0.506238 | 3_1:-11638921 | None:intergenic |
| GAGTGGCTATGGAAGGAAAG+TGG | 0.510058 | 3_1:+11639314 | Msa0348810:CDS |
| GAAAGAGGCACTGTCAAACT+AGG | 0.510671 | 3_1:-11640607 | None:intergenic |
| TTCGCGATGCGGAGTTTGCA+TGG | 0.518983 | 3_1:+11641661 | Msa0348810:CDS |
| GACAATTGTATGTTAGGTAT+GGG | 0.523870 | 3_1:+11641825 | Msa0348810:CDS |
| CATGATTCGAGCTGCTGCAA+AGG | 0.529173 | 3_1:+11638926 | Msa0348810:CDS |
| GAATTTAGAAGCCCGACCGA+TGG | 0.536620 | 3_1:+11641402 | Msa0348810:CDS |
| TCACGTGAAGCTACGCCGCA+AGG | 0.540843 | 3_1:-11641015 | None:intergenic |
| GAACATCCTTGTCTCGCCAT+CGG | 0.541848 | 3_1:-11641418 | None:intergenic |
| TCACTCAGACAAGTTGGTGG+AGG | 0.545545 | 3_1:+11641552 | Msa0348810:CDS |
| CACTCAGACAAGTTGGTGGA+GGG | 0.548888 | 3_1:+11641553 | Msa0348810:CDS |
| AGTTCAGGCTAAAGCTTGCA+TGG | 0.549319 | 3_1:+11639249 | Msa0348810:CDS |
| GAAGCATGTGAAAGTGGGAT+TGG | 0.553568 | 3_1:+11642570 | Msa0348810:CDS |
| ATCGAAAACATTGACATTGG+TGG | 0.554035 | 3_1:+11638897 | Msa0348810:CDS |
| AGCCGACTCGCACCTTCCCA+TGG | 0.554823 | 3_1:-11640741 | None:intergenic |
| AAGCTTTCACTCAGACAAGT+TGG | 0.555957 | 3_1:+11641546 | Msa0348810:CDS |
| AAAGGACTCGAGATTCTTCG+TGG | 0.558624 | 3_1:+11641474 | Msa0348810:CDS |
| CACTACTCTTTACCAATGTG+AGG | 0.558936 | 3_1:+11642664 | Msa0348810:CDS |
| CTTTCACTCAGACAAGTTGG+TGG | 0.567270 | 3_1:+11641549 | Msa0348810:CDS |
| GCCCGACCGATGGCGAGACA+AGG | 0.568567 | 3_1:+11641412 | Msa0348810:CDS |
| GTGGAAGAAGCATGTGAAAG+TGG | 0.578386 | 3_1:+11642564 | Msa0348810:CDS |
| TAATGCTATTGTGATAGCTA+AGG | 0.581739 | 3_1:+11641707 | Msa0348810:CDS |
| CTTGCAGAGGTCAACGCTGG+TGG | 0.584220 | 3_1:+11640697 | Msa0348810:CDS |
| ACATTGAACTTGATGTCGGA+TGG | 0.586856 | 3_1:-11641606 | None:intergenic |
| CACACAGTTCCAAGCAGCAT+CGG | 0.588007 | 3_1:-11640947 | None:intergenic |
| TCAGAGAAGACTCCTCAAGA+TGG | 0.589058 | 3_1:+11641633 | Msa0348810:CDS |
| GGTGGCATTGAATTTAAGGA+TGG | 0.590078 | 3_1:+11638873 | Msa0348810:CDS |
| ATGCTTCACAACTACACATG+TGG | 0.592534 | 3_1:-11640986 | None:intergenic |
| TTATCAGCGTTGTTAAATAG+CGG | 0.592949 | 3_1:+11642806 | Msa0348810:three_prime_UTR |
| TAAGAAATTCTAGAAGGGCA+GGG | 0.593000 | 3_1:-11639208 | None:intergenic |
| GAAGAAAGCATCACTAGCCA+AGG | 0.594165 | 3_1:-11641922 | None:intergenic |
| CTATTCTTAAACTCTCGACA+CGG | 0.595661 | 3_1:-11641863 | None:intergenic |
| GATAAAGTTACTTCAGCTGG+TGG | 0.597380 | 3_1:+11638855 | Msa0348810:CDS |
| TCCTTTAAGAAATTCTAGAA+GGG | 0.598309 | 3_1:-11639213 | None:intergenic |
| TGCTTCACAACTACACATGT+GGG | 0.603326 | 3_1:-11640985 | None:intergenic |
| GGAATCGAAAACATTGACAT+TGG | 0.608276 | 3_1:+11638894 | Msa0348810:CDS |
| AGTAGCTGAGTGGCTATGGA+AGG | 0.610722 | 3_1:+11639307 | Msa0348810:CDS |
| AGCTTTAACAGCTAGTCTGT+AGG | 0.618534 | 3_1:-11641052 | None:intergenic |
| GTGGCTATGGAAGGAAAGTG+GGG | 0.618871 | 3_1:+11639316 | Msa0348810:CDS |
| TCGCGAAGCTCACCATCTTG+AGG | 0.621210 | 3_1:-11641645 | None:intergenic |
| GCCATTAACACTTACCAAAG+GGG | 0.623388 | 3_1:-11641944 | None:intergenic |
| GATGTCATATAATAACAACT+TGG | 0.623494 | 3_1:+11640921 | Msa0348810:CDS |
| ATGCCTGAAGTGCCTCACAT+TGG | 0.628238 | 3_1:-11642676 | None:intergenic |
| GCTACAGCCATCCAACACCA+TGG | 0.629174 | 3_1:+11640724 | Msa0348810:CDS |
| AGATGGTGAGCTTCGCGATG+CGG | 0.629520 | 3_1:+11641650 | Msa0348810:CDS |
| TGATGACAAAAGACTTGCAG+AGG | 0.630566 | 3_1:+11640684 | Msa0348810:CDS |
| AACAGCTTGGAAAGATGCTG+TGG | 0.633339 | 3_1:+11642545 | Msa0348810:intron |
| ATTGGTGTTATTGCAGAACC+AGG | 0.634278 | 3_1:+11642588 | Msa0348810:CDS |
| GCCATATCATTGATGTGTAG+CGG | 0.634693 | 3_1:+11642931 | Msa0348810:three_prime_UTR |
| GACTACATTGAACTTGATGT+CGG | 0.635583 | 3_1:-11641610 | None:intergenic |
| TGTATGTTAGGTATGGGAAG+CGG | 0.635594 | 3_1:+11641831 | Msa0348810:CDS |
| CTACAGCCATCCAACACCAT+GGG | 0.644841 | 3_1:+11640725 | Msa0348810:CDS |
| TCAGACAAGTTGGTGGAGGG+TGG | 0.651755 | 3_1:+11641556 | Msa0348810:CDS |
| TGGAAGAAGCATGTGAAAGT+GGG | 0.652615 | 3_1:+11642565 | Msa0348810:CDS |
| AGCCATCCAACACCATGGGA+AGG | 0.659576 | 3_1:+11640729 | Msa0348810:CDS |
| AGAGGCACTGTCAAACTAGG+AGG | 0.665621 | 3_1:-11640604 | None:intergenic |
| AGACTTGCAGAGGTCAACGC+TGG | 0.667390 | 3_1:+11640694 | Msa0348810:CDS |
| GTGGAAAGTCAAAGACTCTG+AGG | 0.669931 | 3_1:+11641493 | Msa0348810:CDS |
| TGATCTCTTATACTACCACC+TGG | 0.676807 | 3_1:-11642606 | None:intergenic |
| TGGCTATGGAAGGAAAGTGG+GGG | 0.679783 | 3_1:+11639317 | Msa0348810:CDS |
| AGAGTTTAAGAATAGCAATG+AGG | 0.680556 | 3_1:+11641871 | Msa0348810:CDS |
| GTGAAGCATACTAATCCTTG+CGG | 0.681266 | 3_1:+11641000 | Msa0348810:CDS |
| ATGATTCTGCAGTAGCTGAG+TGG | 0.695894 | 3_1:+11639297 | Msa0348810:CDS |
| GGTGTTATTGCAGAACCAGG+TGG | 0.700300 | 3_1:+11642591 | Msa0348810:CDS |
| GCTATAGTGCTACAACGCAG+AGG | 0.711518 | 3_1:+11642839 | Msa0348810:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATAGAAAAATTTGTTTA+AGG | + | chr3_1:11639760-11639779 | Msa0348810:intron | 10.0% |
| !!! | TTATAGAAAAATTTGTTTAA+GGG | + | chr3_1:11639761-11639780 | Msa0348810:intron | 10.0% |
| !! | AGAAAAAAAAAATCATATTA+GGG | - | chr3_1:11642230-11642249 | None:intergenic | 10.0% |
| !! | AAGAAAAAAAAAATCATATT+AGG | - | chr3_1:11642231-11642250 | None:intergenic | 10.0% |
| !! | AAAAAGTTAAATATATTGTA+GGG | + | chr3_1:11642380-11642399 | Msa0348810:intron | 10.0% |
| !!! | ATCTAAAAATCTAAAATTAC+TGG | + | chr3_1:11640777-11640796 | Msa0348810:intron | 15.0% |
| !! | ATAAATTGTTATATCAGAAA+AGG | + | chr3_1:11642130-11642149 | Msa0348810:intron | 15.0% |
| !! | AAAAACCATAAGTATATTAT+AGG | + | chr3_1:11642348-11642367 | Msa0348810:intron | 15.0% |
| !! | GAAAAAGTTAAATATATTGT+AGG | + | chr3_1:11642379-11642398 | Msa0348810:intron | 15.0% |
| !! | GAAGTAACTTTATCATAAAA+TGG | - | chr3_1:11638849-11638868 | None:intergenic | 20.0% |
| !! | AAAAATAAAAATTCAGCTGA+AGG | - | chr3_1:11639097-11639116 | None:intergenic | 20.0% |
| !! | TTACAAATATAATCCTAGAA+TGG | + | chr3_1:11639425-11639444 | Msa0348810:intron | 20.0% |
| !!! | AATTTGTTTAAGGGTATAAT+TGG | + | chr3_1:11639770-11639789 | Msa0348810:intron | 20.0% |
| !!! | ATTTGTTTAAGGGTATAATT+GGG | + | chr3_1:11639771-11639790 | Msa0348810:intron | 20.0% |
| !!! | GTTACACTTTTTAAATGATA+CGG | + | chr3_1:11639832-11639851 | Msa0348810:intron | 20.0% |
| !!! | TTACACTTTTTAAATGATAC+GGG | + | chr3_1:11639833-11639852 | Msa0348810:intron | 20.0% |
| !!! | TTATTCTTATTTGTTACATG+TGG | + | chr3_1:11639928-11639947 | Msa0348810:intron | 20.0% |
| !!! | TTGAAAATTGAGGTTATTTT+TGG | + | chr3_1:11639959-11639978 | Msa0348810:intron | 20.0% |
| !!! | TGAAAATTGAGGTTATTTTT+GGG | + | chr3_1:11639960-11639979 | Msa0348810:intron | 20.0% |
| !! | TATTATATTGAGATCCATAT+TGG | + | chr3_1:11640181-11640200 | Msa0348810:intron | 20.0% |
| !!! | ACTTTAATCTAAAACTATTG+GGG | - | chr3_1:11640336-11640355 | None:intergenic | 20.0% |
| !!! | GACTTTAATCTAAAACTATT+GGG | - | chr3_1:11640337-11640356 | None:intergenic | 20.0% |
| !!! | TGACTTTAATCTAAAACTAT+TGG | - | chr3_1:11640338-11640357 | None:intergenic | 20.0% |
| !! | ATATCACATGACTAAAAAAA+TGG | + | chr3_1:11640362-11640381 | Msa0348810:intron | 20.0% |
| !! | ATTAATAGTTCTTGAAATCA+TGG | - | chr3_1:11640528-11640547 | None:intergenic | 20.0% |
| !!! | ATTCTATATAAACTCTTTTC+AGG | - | chr3_1:11641188-11641207 | None:intergenic | 20.0% |
| !!! | ATGCTGTTTTTATATGTTTT+AGG | + | chr3_1:11641359-11641378 | Msa0348810:intron | 20.0% |
| !! | CATAATGTATTATGTATACA+AGG | - | chr3_1:11641738-11641757 | None:intergenic | 20.0% |
| !!! | AATATACTTATGGTTTTTTC+AGG | - | chr3_1:11642346-11642365 | None:intergenic | 20.0% |
| !! | TTAGTCCTATAATATACTTA+TGG | - | chr3_1:11642356-11642375 | None:intergenic | 20.0% |
| !!! | ATTTTAAGCTAAATAGCATA+TGG | - | chr3_1:11642888-11642907 | None:intergenic | 20.0% |
| !!! | TTTAGCTTAAAATAGTCAAA+TGG | + | chr3_1:11642895-11642914 | Msa0348810:three_prime_UTR | 20.0% |
| ! | GTTGTTTATTAGACTGAAAA+CGG | + | chr3_1:11638948-11638967 | Msa0348810:intron | 25.0% |
| !! | TGATTCAGAAAACATTTTGT+TGG | + | chr3_1:11639012-11639031 | Msa0348810:intron | 25.0% |
| !! | TCCTTTAAGAAATTCTAGAA+GGG | - | chr3_1:11639216-11639235 | None:intergenic | 25.0% |
| !! | TTCCTTTAAGAAATTCTAGA+AGG | - | chr3_1:11639217-11639236 | None:intergenic | 25.0% |
| ! | TCTATAATAAAGATCGTTGT+TGG | - | chr3_1:11639748-11639767 | None:intergenic | 25.0% |
| ! | GGTATTTGTATTGAAAATTG+AGG | + | chr3_1:11639949-11639968 | Msa0348810:intron | 25.0% |
| !! | ATACAATATACAGACACTTT+TGG | - | chr3_1:11640102-11640121 | None:intergenic | 25.0% |
| !! | TGATTGAAATATTTGAAGCA+TGG | + | chr3_1:11640157-11640176 | Msa0348810:intron | 25.0% |
| ! | GAAAAATAGTTCTTCCAATA+TGG | - | chr3_1:11640198-11640217 | None:intergenic | 25.0% |
| ! | TTAAGTAAAAACAAGTGACA+TGG | + | chr3_1:11640279-11640298 | Msa0348810:intron | 25.0% |
| ! | TAAGCAATATTGACAAAAAG+AGG | + | chr3_1:11640390-11640409 | Msa0348810:intron | 25.0% |
| ! | CATGTAATAAATACACACTA+GGG | + | chr3_1:11640429-11640448 | Msa0348810:intron | 25.0% |
| ! | GATGTCATATAATAACAACT+TGG | + | chr3_1:11640921-11640940 | Msa0348810:CDS | 25.0% |
| ! | AAAACCTAAGAAAGATTACA+GGG | + | chr3_1:11641255-11641274 | Msa0348810:intron | 25.0% |
| !! | GGAAATTTAAAATGTAACCT+AGG | - | chr3_1:11641304-11641323 | None:intergenic | 25.0% |
| !! | GAAACTTGTTTATGATTCAA+TGG | + | chr3_1:11641757-11641776 | Msa0348810:intron | 25.0% |
| !! | TTCCTTTGTTAAATTTTTGC+AGG | + | chr3_1:11641803-11641822 | Msa0348810:intron | 25.0% |
| !! | GTTACTCAATTTTATCTTCT+CGG | - | chr3_1:11642038-11642057 | None:intergenic | 25.0% |
| ! | AAAATTGAGTAACAGCAAAT+TGG | + | chr3_1:11642045-11642064 | Msa0348810:intron | 25.0% |
| !!! | GATGGATTAATGATTCTTTT+TGG | + | chr3_1:11642073-11642092 | Msa0348810:intron | 25.0% |
| !!! | ATTCTTTTTGGTGCATATAT+TGG | + | chr3_1:11642085-11642104 | Msa0348810:intron | 25.0% |
| !!! | TTCTTTTTGGTGCATATATT+GGG | + | chr3_1:11642086-11642105 | Msa0348810:intron | 25.0% |
| !! | AGAAAAGGTTTGCATATTTT+TGG | + | chr3_1:11642145-11642164 | Msa0348810:intron | 25.0% |
| !! | TGGAAAAAGAGTATATTACA+AGG | - | chr3_1:11642172-11642191 | None:intergenic | 25.0% |
| !!! | GTTTTAGTCACTGTAATATT+TGG | - | chr3_1:11642324-11642343 | None:intergenic | 25.0% |
| !! | ATTCACTATCATTTTCTGAT+AGG | - | chr3_1:11642421-11642440 | None:intergenic | 25.0% |
| ! | ATAGACTGTTGTAATAAGTA+TGG | + | chr3_1:11642636-11642655 | Msa0348810:CDS | 25.0% |
| !!! | GCATTGATCATTTTTGTTAT+AGG | + | chr3_1:11642695-11642714 | Msa0348810:exon | 25.0% |
| !!! | ATATGTTTTTGACATCAAGT+AGG | + | chr3_1:11642758-11642777 | Msa0348810:three_prime_UTR | 25.0% |
| TATGATAAAGTTACTTCAGC+TGG | + | chr3_1:11638852-11638871 | Msa0348810:CDS | 30.0% | |
| GTTAATTCTCCAAAGTTCAA+TGG | - | chr3_1:11639045-11639064 | None:intergenic | 30.0% | |
| AGGACAGTATTAATGAACAA+GGG | - | chr3_1:11639077-11639096 | None:intergenic | 30.0% | |
| AAGGACAGTATTAATGAACA+AGG | - | chr3_1:11639078-11639097 | None:intergenic | 30.0% | |
| GATAAAGAAATGTCAATTGC+AGG | + | chr3_1:11639389-11639408 | Msa0348810:intron | 30.0% | |
| CATTAGCGTAATAAAAAGAG+CGG | - | chr3_1:11639551-11639570 | None:intergenic | 30.0% | |
| ! | AACTACCTTTCAACACTTTT+GGG | - | chr3_1:11640012-11640031 | None:intergenic | 30.0% |
| ! | AAACTACCTTTCAACACTTT+TGG | - | chr3_1:11640013-11640032 | None:intergenic | 30.0% |
| AGTGTCTGTATATTGTATGA+AGG | + | chr3_1:11640104-11640123 | Msa0348810:intron | 30.0% | |
| TTGCATGATGTAGAGAATAT+TGG | + | chr3_1:11640129-11640148 | Msa0348810:intron | 30.0% | |
| CCTAGTGTGTATTTATTACA+TGG | - | chr3_1:11640431-11640450 | None:intergenic | 30.0% | |
| CCATGTAATAAATACACACT+AGG | + | chr3_1:11640428-11640447 | Msa0348810:intron | 30.0% | |
| !! | AGAATACTTTTGAGTGAAAG+AGG | - | chr3_1:11640625-11640644 | None:intergenic | 30.0% |
| ! | GATGAAGATTTTCACCATAA+CGG | - | chr3_1:11640648-11640667 | None:intergenic | 30.0% |
| GCAGAAGAATGTTAATGTTA+TGG | - | chr3_1:11640897-11640916 | None:intergenic | 30.0% | |
| TAACATTAACATTCTTCTGC+AGG | + | chr3_1:11640897-11640916 | Msa0348810:intron | 30.0% | |
| !! | TTTCAATGTAGAAGTTGATG+AGG | + | chr3_1:11641107-11641126 | Msa0348810:intron | 30.0% |
| !!! | CGAGTTTTTTCAATTGCATT+GGG | - | chr3_1:11641140-11641159 | None:intergenic | 30.0% |
| CCAATGCAATTGAAAAAACT+CGG | + | chr3_1:11641138-11641157 | Msa0348810:intron | 30.0% | |
| CAATGCAATTGAAAAAACTC+GGG | + | chr3_1:11641139-11641158 | Msa0348810:intron | 30.0% | |
| ! | GTCTTATCTCTTTTCAATGT+AGG | - | chr3_1:11641166-11641185 | None:intergenic | 30.0% |
| GAAAACCTAAGAAAGATTAC+AGG | + | chr3_1:11641254-11641273 | Msa0348810:intron | 30.0% | |
| TTTAAATTTCCATCTTAGCG+AGG | + | chr3_1:11641313-11641332 | Msa0348810:intron | 30.0% | |
| !!! | TATGTTTTAGGTTCTTGCTA+AGG | + | chr3_1:11641371-11641390 | Msa0348810:intron | 30.0% |
| AAGGATGTTCTATGAAATAG+TGG | + | chr3_1:11641431-11641450 | Msa0348810:CDS | 30.0% | |
| TAATGCTATTGTGATAGCTA+AGG | + | chr3_1:11641707-11641726 | Msa0348810:CDS | 30.0% | |
| ACTTGTTTATGATTCAATGG+AGG | + | chr3_1:11641760-11641779 | Msa0348810:intron | 30.0% | |
| GTCCTGCAAAAATTTAACAA+AGG | - | chr3_1:11641808-11641827 | None:intergenic | 30.0% | |
| GACAATTGTATGTTAGGTAT+GGG | + | chr3_1:11641825-11641844 | Msa0348810:CDS | 30.0% | |
| AGAGTTTAAGAATAGCAATG+AGG | + | chr3_1:11641871-11641890 | Msa0348810:CDS | 30.0% | |
| ! | TTCCATTTTAGACCCTATTT+TGG | + | chr3_1:11642187-11642206 | Msa0348810:intron | 30.0% |
| TTTGAATGTTGTATCATGCA+GGG | + | chr3_1:11642282-11642301 | Msa0348810:intron | 30.0% | |
| AAGCTGTTCATAAATAGTCA+AGG | - | chr3_1:11642533-11642552 | None:intergenic | 30.0% | |
| TTGACTATTTATGAACAGCT+TGG | + | chr3_1:11642532-11642551 | Msa0348810:intron | 30.0% | |
| TTATCAGCGTTGTTAAATAG+CGG | + | chr3_1:11642806-11642825 | Msa0348810:three_prime_UTR | 30.0% | |
| GGAATCGAAAACATTGACAT+TGG | + | chr3_1:11638894-11638913 | Msa0348810:CDS | 35.0% | |
| ATCGAAAACATTGACATTGG+TGG | + | chr3_1:11638897-11638916 | Msa0348810:CDS | 35.0% | |
| CTCCAAAGTTCAATGGTATT+TGG | - | chr3_1:11639038-11639057 | None:intergenic | 35.0% | |
| !! | TGTTTTTGAGCAGAATCACA+AGG | + | chr3_1:11639154-11639173 | Msa0348810:intron | 35.0% |
| ! | TAAGAAATTCTAGAAGGGCA+GGG | - | chr3_1:11639211-11639230 | None:intergenic | 35.0% |
| ! | TTAAGAAATTCTAGAAGGGC+AGG | - | chr3_1:11639212-11639231 | None:intergenic | 35.0% |
| !! | GCCCTTCTAGAATTTCTTAA+AGG | + | chr3_1:11639212-11639231 | Msa0348810:CDS | 35.0% |
| TCCATACCTAGCAGATTAAA+TGG | + | chr3_1:11639458-11639477 | Msa0348810:intron | 35.0% | |
| ! | AGTTTGCCATTTAATCTGCT+AGG | - | chr3_1:11639467-11639486 | None:intergenic | 35.0% |
| !! | TCTAACCCAAAAGTGTTGAA+AGG | + | chr3_1:11640004-11640023 | Msa0348810:intron | 35.0% |
| !!! | GTTGCTTGCAAGTTAGTTTT+TGG | - | chr3_1:11640075-11640094 | None:intergenic | 35.0% |
| ! | CAATATACAGACACTTTTGG+TGG | - | chr3_1:11640099-11640118 | None:intergenic | 35.0% |
| ATATAGTATAGCACGATGCA+TGG | - | chr3_1:11640502-11640521 | None:intergenic | 35.0% | |
| !! | CTCAAAAGTATTCTCCGTTA+TGG | + | chr3_1:11640631-11640650 | Msa0348810:CDS | 35.0% |
| !!! | CCGAGTTTTTTCAATTGCAT+TGG | - | chr3_1:11641141-11641160 | None:intergenic | 35.0% |
| ! | TCTTTCTTAGGTTTTCGACT+AGG | - | chr3_1:11641250-11641269 | None:intergenic | 35.0% |
| CAAACCCTGTAATCTTTCTT+AGG | - | chr3_1:11641262-11641281 | None:intergenic | 35.0% | |
| ! | AGTCCTTTTTCTGTATAGCT+CGG | - | chr3_1:11641462-11641481 | None:intergenic | 35.0% |
| GAAGCAAAAAAGAATGAACC+CGG | + | chr3_1:11641522-11641541 | Msa0348810:CDS | 35.0% | |
| GACTACATTGAACTTGATGT+CGG | - | chr3_1:11641613-11641632 | None:intergenic | 35.0% | |
| TGTTTATGATTCAATGGAGG+TGG | + | chr3_1:11641763-11641782 | Msa0348810:intron | 35.0% | |
| TTGCAGGACAATTGTATGTT+AGG | + | chr3_1:11641819-11641838 | Msa0348810:intron | 35.0% | |
| GGACAATTGTATGTTAGGTA+TGG | + | chr3_1:11641824-11641843 | Msa0348810:intron | 35.0% | |
| CTATTCTTAAACTCTCGACA+CGG | - | chr3_1:11641866-11641885 | None:intergenic | 35.0% | |
| TGCCATTAACACTTACCAAA+GGG | - | chr3_1:11641948-11641967 | None:intergenic | 35.0% | |
| TTGCCATTAACACTTACCAA+AGG | - | chr3_1:11641949-11641968 | None:intergenic | 35.0% | |
| GCTATGTTGTAAAGAAGACT+TGG | + | chr3_1:11641987-11642006 | Msa0348810:intron | 35.0% | |
| GACCAAAATAGGGTCTAAAA+TGG | - | chr3_1:11642192-11642211 | None:intergenic | 35.0% | |
| ACCAAACAAGGACCAAAATA+GGG | - | chr3_1:11642202-11642221 | None:intergenic | 35.0% | |
| AACCAAACAAGGACCAAAAT+AGG | - | chr3_1:11642203-11642222 | None:intergenic | 35.0% | |
| ATTAGGGACTAAACCAAACA+AGG | - | chr3_1:11642214-11642233 | None:intergenic | 35.0% | |
| GTTTGAATGTTGTATCATGC+AGG | + | chr3_1:11642281-11642300 | Msa0348810:intron | 35.0% | |
| TTGACATCAAGTAGGTCATA+AGG | + | chr3_1:11642766-11642785 | Msa0348810:three_prime_UTR | 35.0% | |
| TTGTTAAATAGCGGCTATAG+TGG | + | chr3_1:11642815-11642834 | Msa0348810:three_prime_UTR | 35.0% | |
| GATAAAGTTACTTCAGCTGG+TGG | + | chr3_1:11638855-11638874 | Msa0348810:CDS | 40.0% | |
| ! | AGCTGGTGGCATTGAATTTA+AGG | + | chr3_1:11638869-11638888 | Msa0348810:CDS | 40.0% |
| ! | GGTGGCATTGAATTTAAGGA+TGG | + | chr3_1:11638873-11638892 | Msa0348810:CDS | 40.0% |
| GGCCAAATACCATTGAACTT+TGG | + | chr3_1:11639033-11639052 | Msa0348810:intron | 40.0% | |
| ! | GCAGAATCACAAGGATGTTT+TGG | + | chr3_1:11639163-11639182 | Msa0348810:intron | 40.0% |
| !!! | TCACAAGGATGTTTTGGTAG+TGG | + | chr3_1:11639169-11639188 | Msa0348810:CDS | 40.0% |
| ! | GGAACAAGCTTTTCCATTCT+AGG | - | chr3_1:11639441-11639460 | None:intergenic | 40.0% |
| GCCATTTAATCTGCTAGGTA+TGG | - | chr3_1:11639462-11639481 | None:intergenic | 40.0% | |
| ACGGGAAAAAAACAGACATG+TGG | + | chr3_1:11639851-11639870 | Msa0348810:intron | 40.0% | |
| TGATGACAAAAGACTTGCAG+AGG | + | chr3_1:11640684-11640703 | Msa0348810:CDS | 40.0% | |
| TGCTTCACAACTACACATGT+GGG | - | chr3_1:11640988-11641007 | None:intergenic | 40.0% | |
| ATGCTTCACAACTACACATG+TGG | - | chr3_1:11640989-11641008 | None:intergenic | 40.0% | |
| GTGAAGCATACTAATCCTTG+CGG | + | chr3_1:11641000-11641019 | Msa0348810:CDS | 40.0% | |
| ! | AGCTTTAACAGCTAGTCTGT+AGG | - | chr3_1:11641055-11641074 | None:intergenic | 40.0% |
| TTGTCTGAGTGAAAGCTTTC+CGG | - | chr3_1:11641544-11641563 | None:intergenic | 40.0% | |
| AAGCTTTCACTCAGACAAGT+TGG | + | chr3_1:11641546-11641565 | Msa0348810:CDS | 40.0% | |
| ACATTGAACTTGATGTCGGA+TGG | - | chr3_1:11641609-11641628 | None:intergenic | 40.0% | |
| TGTATGTTAGGTATGGGAAG+CGG | + | chr3_1:11641831-11641850 | Msa0348810:CDS | 40.0% | |
| AGAATAGCAATGAGGAAAGC+TGG | + | chr3_1:11641879-11641898 | Msa0348810:CDS | 40.0% | |
| TCCCCTTTGGTAAGTGTTAA+TGG | + | chr3_1:11641943-11641962 | Msa0348810:intron | 40.0% | |
| GCCATTAACACTTACCAAAG+GGG | - | chr3_1:11641947-11641966 | None:intergenic | 40.0% | |
| GAGTAACAGCAAATTGGTTG+TGG | + | chr3_1:11642051-11642070 | Msa0348810:intron | 40.0% | |
| AACAGCAAATTGGTTGTGGA+TGG | + | chr3_1:11642055-11642074 | Msa0348810:intron | 40.0% | |
| !!! | ACCCTATTTTGGTCCTTGTT+TGG | + | chr3_1:11642198-11642217 | Msa0348810:intron | 40.0% |
| ! | TGGAAGAAGCATGTGAAAGT+GGG | + | chr3_1:11642565-11642584 | Msa0348810:CDS | 40.0% |
| !! | ATTGGTGTTATTGCAGAACC+AGG | + | chr3_1:11642588-11642607 | Msa0348810:CDS | 40.0% |
| TGATCTCTTATACTACCACC+TGG | - | chr3_1:11642609-11642628 | None:intergenic | 40.0% | |
| AGGTGGTAGTATAAGAGATC+AGG | + | chr3_1:11642608-11642627 | Msa0348810:CDS | 40.0% | |
| CACTACTCTTTACCAATGTG+AGG | + | chr3_1:11642664-11642683 | Msa0348810:CDS | 40.0% | |
| GCCATATCATTGATGTGTAG+CGG | + | chr3_1:11642931-11642950 | Msa0348810:three_prime_UTR | 40.0% | |
| TCCGCTACACATCAATGATA+TGG | - | chr3_1:11642935-11642954 | None:intergenic | 40.0% | |
| GAAACCAAGACGAACAGTTC+AGG | + | chr3_1:11639234-11639253 | Msa0348810:CDS | 45.0% | |
| TTAGCCTGAACTGTTCGTCT+TGG | - | chr3_1:11639241-11639260 | None:intergenic | 45.0% | |
| AGTTCAGGCTAAAGCTTGCA+TGG | + | chr3_1:11639249-11639268 | Msa0348810:CDS | 45.0% | |
| ATGATTCTGCAGTAGCTGAG+TGG | + | chr3_1:11639297-11639316 | Msa0348810:CDS | 45.0% | |
| AGTGGCTATGGAAGGAAAGT+GGG | + | chr3_1:11639315-11639334 | Msa0348810:CDS | 45.0% | |
| !! | GAAAGAGGCACTGTCAAACT+AGG | - | chr3_1:11640610-11640629 | None:intergenic | 45.0% |
| !! | CTCATTCTCACTGGCTTGTA+AGG | - | chr3_1:11641222-11641241 | None:intergenic | 45.0% |
| CAAGCCAGTGAGAATGAGTT+AGG | + | chr3_1:11641224-11641243 | Msa0348810:intron | 45.0% | |
| TAGGCCTAACTCATTCTCAC+TGG | - | chr3_1:11641231-11641250 | None:intergenic | 45.0% | |
| TACAGGGTTTGTGAAGACAG+AGG | + | chr3_1:11641271-11641290 | Msa0348810:intron | 45.0% | |
| ! | AAGACAGAGGCTCTTTTCCT+AGG | + | chr3_1:11641284-11641303 | Msa0348810:intron | 45.0% |
| TTTGCTCATCCTCGCTAAGA+TGG | - | chr3_1:11641325-11641344 | None:intergenic | 45.0% | |
| GCACCGAGCTATACAGAAAA+AGG | + | chr3_1:11641456-11641475 | Msa0348810:CDS | 45.0% | |
| AAAGGACTCGAGATTCTTCG+TGG | + | chr3_1:11641474-11641493 | Msa0348810:CDS | 45.0% | |
| GTGGAAAGTCAAAGACTCTG+AGG | + | chr3_1:11641493-11641512 | Msa0348810:CDS | 45.0% | |
| TGTCTGAGTGAAAGCTTTCC+GGG | - | chr3_1:11641543-11641562 | None:intergenic | 45.0% | |
| ! | CTTTCACTCAGACAAGTTGG+TGG | + | chr3_1:11641549-11641568 | Msa0348810:CDS | 45.0% |
| TCAGAGAAGACTCCTCAAGA+TGG | + | chr3_1:11641633-11641652 | Msa0348810:CDS | 45.0% | |
| CTTAAACTCTCGACACGGTT+TGG | - | chr3_1:11641861-11641880 | None:intergenic | 45.0% | |
| AAAGCTGGAGCTGCTGTTAA+AGG | + | chr3_1:11641894-11641913 | Msa0348810:CDS | 45.0% | |
| !! | GAAGAAAGCATCACTAGCCA+AGG | - | chr3_1:11641925-11641944 | None:intergenic | 45.0% |
| AGTGATGCTTTCTTCCCCTT+TGG | + | chr3_1:11641930-11641949 | Msa0348810:CDS | 45.0% | |
| AACAGCTTGGAAAGATGCTG+TGG | + | chr3_1:11642545-11642564 | Msa0348810:intron | 45.0% | |
| ! | GTGGAAGAAGCATGTGAAAG+TGG | + | chr3_1:11642564-11642583 | Msa0348810:CDS | 45.0% |
| GAAGCATGTGAAAGTGGGAT+TGG | + | chr3_1:11642570-11642589 | Msa0348810:CDS | 45.0% | |
| ! | TTACCAATGTGAGGCACTTC+AGG | + | chr3_1:11642673-11642692 | Msa0348810:CDS | 45.0% |
| CTTTGCAGCAGCTCGAATCA+TGG | - | chr3_1:11638928-11638947 | None:intergenic | 50.0% | |
| CATGATTCGAGCTGCTGCAA+AGG | + | chr3_1:11638926-11638945 | Msa0348810:CDS | 50.0% | |
| AGTAGCTGAGTGGCTATGGA+AGG | + | chr3_1:11639307-11639326 | Msa0348810:CDS | 50.0% | |
| GAGTGGCTATGGAAGGAAAG+TGG | + | chr3_1:11639314-11639333 | Msa0348810:CDS | 50.0% | |
| GTGGCTATGGAAGGAAAGTG+GGG | + | chr3_1:11639316-11639335 | Msa0348810:CDS | 50.0% | |
| TGGCTATGGAAGGAAAGTGG+GGG | + | chr3_1:11639317-11639336 | Msa0348810:CDS | 50.0% | |
| !! | AGAGGCACTGTCAAACTAGG+AGG | - | chr3_1:11640607-11640626 | None:intergenic | 50.0% |
| CTACAGCCATCCAACACCAT+GGG | + | chr3_1:11640725-11640744 | Msa0348810:CDS | 50.0% | |
| CACACAGTTCCAAGCAGCAT+CGG | - | chr3_1:11640950-11640969 | None:intergenic | 50.0% | |
| GCTGATCCTGTCAGTGCATT+TGG | + | chr3_1:11641072-11641091 | Msa0348810:intron | 50.0% | |
| GATCCTGTCAGTGCATTTGG+CGG | + | chr3_1:11641075-11641094 | Msa0348810:intron | 50.0% | |
| ! | ATTCCGCCAAATGCACTGAC+AGG | - | chr3_1:11641081-11641100 | None:intergenic | 50.0% |
| !! | TCACTGGCTTGTAAGGTGAG+GGG | - | chr3_1:11641215-11641234 | None:intergenic | 50.0% |
| !! | CTCACTGGCTTGTAAGGTGA+GGG | - | chr3_1:11641216-11641235 | None:intergenic | 50.0% |
| !! | TCTCACTGGCTTGTAAGGTG+AGG | - | chr3_1:11641217-11641236 | None:intergenic | 50.0% |
| GAATTTAGAAGCCCGACCGA+TGG | + | chr3_1:11641402-11641421 | Msa0348810:CDS | 50.0% | |
| GAACATCCTTGTCTCGCCAT+CGG | - | chr3_1:11641421-11641440 | None:intergenic | 50.0% | |
| !! | TCACTCAGACAAGTTGGTGG+AGG | + | chr3_1:11641552-11641571 | Msa0348810:CDS | 50.0% |
| !! | CACTCAGACAAGTTGGTGGA+GGG | + | chr3_1:11641553-11641572 | Msa0348810:CDS | 50.0% |
| !! | AACTCTCGACACGGTTTGGT+TGG | - | chr3_1:11641857-11641876 | None:intergenic | 50.0% |
| TGCTGTTAAAGGAGCAGCCT+TGG | + | chr3_1:11641905-11641924 | Msa0348810:CDS | 50.0% | |
| !! | GGTGTTATTGCAGAACCAGG+TGG | + | chr3_1:11642591-11642610 | Msa0348810:CDS | 50.0% |
| ! | ATGCCTGAAGTGCCTCACAT+TGG | - | chr3_1:11642679-11642698 | None:intergenic | 50.0% |
| GCTATAGTGCTACAACGCAG+AGG | + | chr3_1:11642839-11642858 | Msa0348810:three_prime_UTR | 50.0% | |
| CTGCAGTAGCTGAGTGGCTA+TGG | + | chr3_1:11639303-11639322 | Msa0348810:CDS | 55.0% | |
| CTATGGAAGGAAAGTGGGGG+AGG | + | chr3_1:11639320-11639339 | Msa0348810:CDS | 55.0% | |
| AGACTTGCAGAGGTCAACGC+TGG | + | chr3_1:11640694-11640713 | Msa0348810:CDS | 55.0% | |
| GCTACAGCCATCCAACACCA+TGG | + | chr3_1:11640724-11640743 | Msa0348810:CDS | 55.0% | |
| AGCCATCCAACACCATGGGA+AGG | + | chr3_1:11640729-11640748 | Msa0348810:CDS | 55.0% | |
| ! | CACCTTCCCATGGTGTTGGA+TGG | - | chr3_1:11640734-11640753 | None:intergenic | 55.0% |
| ACTTGGATGCCGATGCTGCT+TGG | + | chr3_1:11640938-11640957 | Msa0348810:CDS | 55.0% | |
| ATCCTTGTCTCGCCATCGGT+CGG | - | chr3_1:11641417-11641436 | None:intergenic | 55.0% | |
| !! | TCAGACAAGTTGGTGGAGGG+TGG | + | chr3_1:11641556-11641575 | Msa0348810:CDS | 55.0% |
| TCGCGAAGCTCACCATCTTG+AGG | - | chr3_1:11641648-11641667 | None:intergenic | 55.0% | |
| AGATGGTGAGCTTCGCGATG+CGG | + | chr3_1:11641650-11641669 | Msa0348810:CDS | 55.0% | |
| TTCGCGATGCGGAGTTTGCA+TGG | + | chr3_1:11641661-11641680 | Msa0348810:CDS | 55.0% | |
| GCAGCAGCTCGAATCATGGC+TGG | - | chr3_1:11638924-11638943 | None:intergenic | 60.0% | |
| CTTGCAGAGGTCAACGCTGG+TGG | + | chr3_1:11640697-11640716 | Msa0348810:CDS | 60.0% | |
| CTCGCACCTTCCCATGGTGT+TGG | - | chr3_1:11640738-11640757 | None:intergenic | 60.0% | |
| ! | CACCATGGGAAGGTGCGAGT+CGG | + | chr3_1:11640739-11640758 | Msa0348810:intron | 60.0% |
| TCACGTGAAGCTACGCCGCA+AGG | - | chr3_1:11641018-11641037 | None:intergenic | 60.0% | |
| TCCTTGTCTCGCCATCGGTC+GGG | - | chr3_1:11641416-11641435 | None:intergenic | 60.0% | |
| ! | TGGTGGAGGGTGGTTAGCTC+AGG | + | chr3_1:11641566-11641585 | Msa0348810:CDS | 60.0% |
| !! | AGCCGACTCGCACCTTCCCA+TGG | - | chr3_1:11640744-11640763 | None:intergenic | 65.0% |
| GCCCGACCGATGGCGAGACA+AGG | + | chr3_1:11641412-11641431 | Msa0348810:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 11638846 | 11643050 | 11638846 | ID=Msa0348810;Name=Msa0348810 |
| chr3_1 | mRNA | 11638846 | 11643050 | 11638846 | ID=Msa0348810-mRNA-1;Parent=Msa0348810;Name=Msa0348810-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.83|0.71|1|1|1|7|349|406 |
| chr3_1 | exon | 11638846 | 11638947 | 11638846 | ID=Msa0348810-mRNA-1:exon:3068;Parent=Msa0348810-mRNA-1 |
| chr3_1 | exon | 11639167 | 11639341 | 11639167 | ID=Msa0348810-mRNA-1:exon:3069;Parent=Msa0348810-mRNA-1 |
| chr3_1 | exon | 11640596 | 11640750 | 11640596 | ID=Msa0348810-mRNA-1:exon:3070;Parent=Msa0348810-mRNA-1 |
| chr3_1 | exon | 11640919 | 11641080 | 11640919 | ID=Msa0348810-mRNA-1:exon:3071;Parent=Msa0348810-mRNA-1 |
| chr3_1 | exon | 11641381 | 11641728 | 11641381 | ID=Msa0348810-mRNA-1:exon:3072;Parent=Msa0348810-mRNA-1 |
| chr3_1 | exon | 11641825 | 11641951 | 11641825 | ID=Msa0348810-mRNA-1:exon:3073;Parent=Msa0348810-mRNA-1 |
| chr3_1 | exon | 11642550 | 11643050 | 11642550 | ID=Msa0348810-mRNA-1:exon:3074;Parent=Msa0348810-mRNA-1 |
| chr3_1 | CDS | 11638846 | 11638947 | 11638846 | ID=Msa0348810-mRNA-1:cds;Parent=Msa0348810-mRNA-1 |
| chr3_1 | CDS | 11639167 | 11639341 | 11639167 | ID=Msa0348810-mRNA-1:cds;Parent=Msa0348810-mRNA-1 |
| chr3_1 | CDS | 11640596 | 11640750 | 11640596 | ID=Msa0348810-mRNA-1:cds;Parent=Msa0348810-mRNA-1 |
| chr3_1 | CDS | 11640919 | 11641080 | 11640919 | ID=Msa0348810-mRNA-1:cds;Parent=Msa0348810-mRNA-1 |
| chr3_1 | CDS | 11641381 | 11641728 | 11641381 | ID=Msa0348810-mRNA-1:cds;Parent=Msa0348810-mRNA-1 |
| chr3_1 | CDS | 11641825 | 11641951 | 11641825 | ID=Msa0348810-mRNA-1:cds;Parent=Msa0348810-mRNA-1 |
| chr3_1 | CDS | 11642550 | 11642701 | 11642550 | ID=Msa0348810-mRNA-1:cds;Parent=Msa0348810-mRNA-1 |
| chr3_1 | three_prime_UTR | 11642702 | 11643050 | 11642702 | ID=Msa0348810-mRNA-1:three_prime_utr;Parent=Msa0348810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
