AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1368610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1368610 MtrunA17_Chr3g0136711 99.666 299 1 0 1 299 1 299 0.0 613
Msa1368610 MtrunA17_Chr1g0150451 92.150 293 22 1 1 292 44 336 0.0 556
Msa1368610 MtrunA17_Chr1g0212961 65.918 267 82 3 19 280 75 337 6.59e-128 368
Msa1368610 MtrunA17_Chr3g0126511 61.686 261 100 0 20 280 80 340 7.28e-115 335
Msa1368610 MtrunA17_Chr4g0050381 47.170 265 127 6 23 280 18 276 8.95e-69 215
Msa1368610 MtrunA17_Chr2g0279151 45.660 265 131 6 23 280 22 280 2.36e-68 214
Msa1368610 MtrunA17_Chr3g0115851 42.958 284 155 5 1 280 1 281 3.52e-67 211
Msa1368610 MtrunA17_Chr5g0426141 41.901 284 158 5 1 280 1 281 7.12e-67 210
Msa1368610 MtrunA17_Chr8g0360351 45.283 265 137 6 21 280 20 281 6.14e-65 205
Msa1368610 MtrunA17_Chr2g0317021 43.396 265 142 6 21 280 71 332 9.42e-63 201
Msa1368610 MtrunA17_Chr3g0105371 42.339 248 130 4 42 280 95 338 3.10e-60 195
Msa1368610 MtrunA17_Chr4g0051661 42.857 252 136 5 33 280 150 397 3.08e-59 194
Msa1368610 MtrunA17_Chr3g0105351 41.129 248 133 4 42 280 71 314 3.29e-58 189
Msa1368610 MtrunA17_Chr5g0430481 39.216 255 142 4 35 280 124 374 7.12e-54 179
Msa1368610 MtrunA17_Chr1g0171571 40.075 267 146 7 33 287 386 650 8.50e-48 169
Msa1368610 MtrunA17_Chr1g0150781 36.424 302 134 7 35 278 240 541 1.56e-46 164
Msa1368610 MtrunA17_Chr3g0112291 33.333 312 171 3 19 293 77 388 5.12e-46 159
Msa1368610 MtrunA17_Chr5g0407161 37.500 264 141 7 36 280 87 345 1.61e-45 158
Msa1368610 MtrunA17_Chr2g0299981 32.102 352 148 8 15 278 185 533 1.28e-44 159
Msa1368610 MtrunA17_Chr4g0070871 39.130 253 111 6 65 278 253 501 3.38e-44 157
Msa1368610 MtrunA17_Chr5g0435721 40.351 228 122 3 35 248 193 420 1.83e-43 154
Msa1368610 MtrunA17_Chr3g0135961 34.528 307 138 7 35 278 231 537 7.26e-42 151
Msa1368610 MtrunA17_Chr1g0194191 31.464 321 182 10 7 294 49 364 8.77e-42 148
Msa1368610 MtrunA17_Chr4g0065141 35.983 239 136 4 56 280 115 350 1.52e-40 145
Msa1368610 MtrunA17_Chr8g0389921 34.694 294 144 10 29 278 143 432 5.28e-40 145
Msa1368610 MtrunA17_Chr5g0396731 35.563 284 149 8 34 284 72 354 5.88e-40 142
Msa1368610 MtrunA17_Chr1g0158781 38.148 270 140 6 33 278 111 377 9.28e-40 143
Msa1368610 MtrunA17_Chr3g0138281 36.296 270 147 8 32 280 80 345 2.45e-39 141
Msa1368610 MtrunA17_Chr2g0293811 30.945 307 162 9 9 278 36 329 7.35e-38 137
Msa1368610 MtrunA17_Chr6g0483411 34.420 276 149 8 38 283 48 321 9.20e-38 136
Msa1368610 MtrunA17_Chr3g0144111 37.885 227 106 6 64 280 26 227 1.77e-36 131
Msa1368610 MtrunA17_Chr1g0150071 31.045 335 155 13 30 294 19 347 1.24e-34 129
Msa1368610 MtrunA17_Chr4g0001761 28.329 353 171 10 8 294 5 341 3.56e-34 127
Msa1368610 MtrunA17_Chr3g0136811 29.882 338 161 12 29 296 18 349 6.17e-33 124
Msa1368610 MtrunA17_Chr3g0127091 27.362 307 167 8 19 277 48 346 1.48e-28 113
Msa1368610 MtrunA17_Chr4g0066371 29.712 313 167 12 28 293 44 350 1.28e-27 110
Msa1368610 MtrunA17_Chr1g0192421 33.750 240 114 11 67 264 91 327 9.22e-27 107
Msa1368610 MtrunA17_Chr1g0187481 29.333 225 142 4 56 280 70 277 9.35e-27 105
Msa1368610 MtrunA17_Chr7g0243571 29.720 286 143 7 65 293 92 376 1.90e-26 107
Msa1368610 MtrunA17_Chr1g0209451 31.373 255 146 10 48 278 46 295 6.15e-26 106
Msa1368610 MtrunA17_Chr7g0272061 30.142 282 137 10 67 291 93 371 6.93e-26 105
Msa1368610 MtrunA17_Chr2g0286951 29.206 315 169 12 28 295 45 352 1.02e-25 105
Msa1368610 MtrunA17_Chr7g0271971 32.114 246 139 8 54 278 57 295 1.78e-25 105
Msa1368610 MtrunA17_Chr7g0256751 31.474 251 131 7 65 275 69 318 5.39e-25 103
Msa1368610 MtrunA17_Chr1g0153671 31.381 239 140 8 65 284 65 298 2.93e-24 101
Msa1368610 MtrunA17_Chr1g0151781 37.634 186 93 6 82 251 114 292 3.92e-24 100
Msa1368610 MtrunA17_Chr7g0225501 34.008 247 137 13 54 278 75 317 4.92e-24 101
Msa1368610 MtrunA17_Chr4g0004971 32.117 274 135 11 60 283 72 344 6.80e-24 99.8
Msa1368610 MtrunA17_Chr7g0263281 30.522 249 124 8 45 247 47 292 1.60e-23 99.0
Msa1368610 MtrunA17_Chr4g0067711 37.107 159 82 5 125 266 174 331 1.67e-23 98.6
Msa1368610 MtrunA17_Chr2g0295401 30.712 267 137 10 61 280 88 353 1.72e-23 98.6
Msa1368610 MtrunA17_Chr1g0192471 29.719 249 147 8 54 281 57 298 3.24e-23 98.6
Msa1368610 MtrunA17_Chr1g0213351 30.662 287 133 11 55 278 69 352 4.06e-23 97.8
Msa1368610 MtrunA17_Chr3g0133801 30.126 239 143 8 65 284 66 299 5.38e-23 98.2
Msa1368610 MtrunA17_Chr5g0394181 31.142 289 151 13 29 280 320 597 1.03e-22 98.2
Msa1368610 MtrunA17_Chr7g0256771 30.502 259 131 9 31 248 42 292 2.12e-22 94.7
Msa1368610 MtrunA17_Chr3g0089711 29.348 276 143 11 31 264 40 305 2.35e-22 95.5
Msa1368610 MtrunA17_Chr6g0486661 29.044 272 148 10 65 292 124 394 2.66e-22 97.1
Msa1368610 MtrunA17_Chr1g0166481 28.505 214 132 3 67 280 81 273 3.00e-22 93.6
Msa1368610 MtrunA17_Chr1g0181901 28.897 263 135 8 31 247 41 297 3.69e-22 95.5
Msa1368610 MtrunA17_Chr3g0089721 29.389 262 136 10 45 264 51 305 3.83e-22 95.1
Msa1368610 MtrunA17_Chr8g0371321 29.197 274 129 9 67 278 81 351 8.84e-21 91.3
Msa1368610 MtrunA17_Chr1g0207571 29.932 294 138 11 67 296 63 352 3.71e-20 89.7
Msa1368610 MtrunA17_Chr1g0185141 28.270 237 112 7 100 278 200 436 5.63e-20 90.5
Msa1368610 MtrunA17_Chr4g0022171 29.577 284 137 9 67 290 98 378 2.27e-19 87.8
Msa1368610 MtrunA17_Chr2g0294291 29.600 250 135 7 60 269 70 318 4.10e-19 86.7
Msa1368610 MtrunA17_Chr2g0324061 31.944 216 120 7 100 291 160 372 8.40e-19 86.3
Msa1368610 MtrunA17_Chr1g0211251 28.125 224 116 7 67 248 83 303 2.03e-18 84.7
Msa1368610 MtrunA17_Chr7g0249421 28.821 229 135 7 93 294 174 401 2.75e-18 84.7
Msa1368610 MtrunA17_Chr4g0063111 27.863 262 150 9 47 274 60 316 3.80e-18 84.3
Msa1368610 MtrunA17_Chr7g0238501 29.646 226 115 5 67 248 265 490 7.42e-18 83.6
Msa1368610 MtrunA17_Chr1g0175381 28.151 238 132 6 65 264 79 315 1.12e-17 82.4
Msa1368610 MtrunA17_Chr7g0250061 26.316 247 136 7 65 269 76 318 1.92e-17 81.6
Msa1368610 MtrunA17_Chr7g0221691 28.205 273 156 10 19 264 125 384 2.10e-16 79.0
Msa1368610 MtrunA17_Chr4g0068971 34.109 129 72 3 160 278 104 229 1.30e-15 75.1
Msa1368610 MtrunA17_Chr8g0342431 35.065 154 81 6 130 266 201 352 5.14e-15 74.7
Msa1368610 MtrunA17_Chr4g0039061 27.490 251 130 9 67 269 204 450 1.74e-14 73.6
Msa1368610 MtrunA17_Chr2g0295991 26.190 336 151 13 52 290 151 486 3.28e-14 72.8
Msa1368610 MtrunA17_Chr4g0067301 29.018 224 99 7 126 291 277 498 1.23e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1368610 AT4G31750.2 88.814 295 32 1 1 295 1 294 0.0 531
Msa1368610 AT4G31750.1 88.814 295 32 1 1 295 1 294 0.0 531
Msa1368610 AT4G31750.3 88.814 295 32 1 1 295 1 294 0.0 531
Msa1368610 AT5G24940.1 82.918 281 47 1 1 281 1 280 1.73e-175 493
Msa1368610 AT5G10740.1 81.495 281 51 1 1 281 1 280 6.99e-172 480
Msa1368610 AT5G10740.2 81.495 281 51 1 1 281 1 280 6.99e-172 480
Msa1368610 AT1G43900.1 63.878 263 89 2 23 280 107 368 6.44e-125 362
Msa1368610 AT5G53140.1 55.872 281 123 1 17 296 83 363 1.86e-115 339
Msa1368610 AT5G53140.2 55.872 281 123 1 17 296 83 363 1.86e-115 339
Msa1368610 AT1G78200.1 45.420 262 139 3 23 280 21 282 6.39e-71 221
Msa1368610 AT1G78200.3 45.420 262 139 3 23 280 21 282 6.39e-71 221
Msa1368610 AT1G78200.2 45.420 262 139 3 23 280 21 282 6.39e-71 221
Msa1368610 AT1G78200.5 46.414 237 124 2 47 280 1 237 1.35e-67 211
Msa1368610 AT1G78200.4 46.414 237 124 2 47 280 1 237 1.35e-67 211
Msa1368610 AT1G34750.2 44.275 262 139 5 23 280 23 281 3.29e-67 211
Msa1368610 AT1G34750.1 44.275 262 139 5 23 280 23 281 3.29e-67 211
Msa1368610 AT1G34750.3 44.275 262 139 5 23 280 23 281 3.29e-67 211
Msa1368610 AT2G20630.1 45.525 257 129 5 27 280 30 278 2.65e-66 209
Msa1368610 AT2G20630.2 44.318 264 136 5 27 287 30 285 7.05e-65 206
Msa1368610 AT4G28400.3 44.444 252 133 5 33 280 12 260 3.19e-64 203
Msa1368610 AT4G28400.1 44.151 265 140 6 21 280 21 282 4.19e-64 203
Msa1368610 AT1G22280.1 44.094 254 135 5 31 280 30 280 5.45e-63 201
Msa1368610 AT3G15260.2 45.627 263 135 6 23 280 29 288 6.73e-62 198
Msa1368610 AT3G15260.1 45.627 263 135 6 23 280 29 288 6.73e-62 198
Msa1368610 AT1G22280.3 43.462 260 134 6 31 280 30 286 3.77e-61 196
Msa1368610 AT2G34740.1 43.922 255 134 6 32 281 85 335 8.25e-59 191
Msa1368610 AT2G40180.1 40.613 261 136 7 35 280 129 385 1.81e-55 184
Msa1368610 AT1G07160.1 40.698 258 137 6 35 280 123 376 8.24e-55 182
Msa1368610 AT2G30020.1 41.569 255 134 5 35 278 140 390 1.94e-54 182
Msa1368610 AT1G34750.4 44.292 219 115 5 23 237 23 238 1.16e-51 170
Msa1368610 AT1G67820.2 42.918 233 119 5 16 244 72 294 1.16e-50 172
Msa1368610 AT1G67820.1 42.918 233 119 5 16 244 108 330 2.73e-50 172
Msa1368610 AT2G40860.4 38.889 270 144 7 33 287 293 556 2.02e-48 169
Msa1368610 AT2G40860.1 38.889 270 144 7 33 287 391 654 2.81e-48 171
Msa1368610 AT3G51470.2 39.847 261 140 7 33 280 27 283 3.40e-48 163
Msa1368610 AT3G51470.1 39.847 261 140 7 33 280 71 327 6.03e-48 164
Msa1368610 AT4G28400.2 42.342 222 120 6 21 237 21 239 4.82e-46 156
Msa1368610 AT5G57050.2 37.793 299 129 11 35 278 73 369 1.88e-45 158
Msa1368610 AT5G57050.1 37.793 299 129 11 35 278 113 409 2.73e-45 159
Msa1368610 AT3G62260.2 33.548 310 172 8 6 285 50 355 4.66e-45 157
Msa1368610 AT3G62260.1 35.766 274 142 8 42 285 85 354 1.52e-44 155
Msa1368610 AT4G26080.1 37.500 296 129 10 35 278 129 420 1.84e-44 157
Msa1368610 AT3G62260.3 36.059 269 138 8 47 285 1 265 3.91e-44 152
Msa1368610 AT2G33700.1 39.207 227 124 5 64 280 122 344 8.02e-44 154
Msa1368610 AT2G34740.3 41.395 215 117 6 32 241 81 291 3.03e-43 150
Msa1368610 AT2G34740.2 41.395 215 117 6 32 241 99 309 3.08e-43 150
Msa1368610 AT2G40860.2 37.600 250 136 6 33 267 391 635 1.22e-42 155
Msa1368610 AT5G59220.1 39.224 232 123 3 35 248 112 343 1.78e-42 151
Msa1368610 AT1G07430.1 39.662 237 118 6 35 248 121 355 1.80e-42 151
Msa1368610 AT2G25620.1 37.262 263 134 6 42 278 97 354 9.30e-42 149
Msa1368610 AT2G25620.2 37.262 263 134 6 42 278 97 354 9.30e-42 149
Msa1368610 AT2G29380.1 35.915 284 139 8 35 278 78 358 1.73e-40 144
Msa1368610 AT3G11410.1 37.815 238 123 4 36 248 106 343 8.32e-40 144
Msa1368610 AT5G51760.2 32.036 334 166 6 2 278 50 379 2.61e-39 142
Msa1368610 AT3G17250.1 35.537 242 128 6 63 280 156 393 2.66e-39 142
Msa1368610 AT1G17550.1 33.654 312 138 8 35 278 189 499 2.92e-39 144
Msa1368610 AT1G17550.2 33.654 312 138 8 35 278 189 499 2.92e-39 144
Msa1368610 AT5G51760.1 32.036 334 166 6 2 278 80 409 3.95e-39 142
Msa1368610 AT1G48040.1 37.398 246 114 6 64 280 115 349 2.92e-38 139
Msa1368610 AT1G72770.4 33.866 313 135 8 35 278 190 499 7.51e-38 140
Msa1368610 AT1G72770.1 33.866 313 135 8 35 278 190 499 7.51e-38 140
Msa1368610 AT1G72770.3 33.866 313 135 8 35 278 190 499 7.51e-38 140
Msa1368610 AT1G18030.1 33.333 273 150 10 38 280 78 348 6.72e-34 127
Msa1368610 AT2G25070.1 28.947 342 165 10 4 280 1 329 2.23e-32 123
Msa1368610 AT2G25070.2 28.947 342 165 10 4 280 1 329 2.23e-32 123
Msa1368610 AT4G31860.1 30.380 316 150 10 30 280 19 329 1.93e-31 120
Msa1368610 AT3G16800.2 34.599 237 122 6 61 264 89 325 3.79e-30 117
Msa1368610 AT3G16800.1 34.599 237 122 6 61 264 89 325 3.79e-30 117
Msa1368610 AT3G16800.3 34.599 237 122 6 61 264 89 325 3.79e-30 117
Msa1368610 AT2G40860.3 36.190 210 115 5 33 228 391 595 4.55e-30 119
Msa1368610 AT3G16800.4 34.783 230 117 6 68 264 1 230 1.16e-29 113
Msa1368610 AT3G16800.6 34.783 230 117 6 68 264 1 230 1.16e-29 113
Msa1368610 AT4G08260.1 33.937 221 108 5 64 278 18 206 1.38e-29 112
Msa1368610 AT4G31860.3 31.752 274 126 9 30 247 19 287 3.38e-29 113
Msa1368610 AT4G27800.1 28.990 307 162 9 19 277 47 345 1.44e-28 113
Msa1368610 AT1G18030.2 34.222 225 121 7 38 237 78 300 3.08e-28 110
Msa1368610 AT1G22280.2 40.909 154 86 4 31 182 30 180 4.11e-28 107
Msa1368610 AT1G68410.4 33.047 233 132 8 65 278 73 300 1.65e-27 111
Msa1368610 AT1G68410.3 33.047 233 132 8 65 278 73 300 1.65e-27 111
Msa1368610 AT1G68410.1 33.047 233 132 8 65 278 73 300 1.65e-27 111
Msa1368610 AT1G68410.2 33.047 233 132 8 65 278 73 300 1.65e-27 111
Msa1368610 AT4G32950.1 37.963 216 108 9 64 256 71 283 4.32e-27 108
Msa1368610 AT5G57050.3 38.191 199 92 9 35 204 113 309 5.68e-27 107
Msa1368610 AT5G27930.1 32.645 242 115 9 67 264 94 331 1.05e-26 108
Msa1368610 AT5G27930.2 32.645 242 115 9 67 264 94 331 1.05e-26 108
Msa1368610 AT3G05640.2 33.725 255 128 11 67 280 95 349 1.63e-26 107
Msa1368610 AT3G05640.1 33.725 255 128 11 67 280 95 349 1.63e-26 107
Msa1368610 AT3G05640.3 33.725 255 128 11 67 280 95 349 1.63e-26 107
Msa1368610 AT4G31860.2 32.061 262 117 9 30 235 19 275 2.02e-26 105
Msa1368610 AT4G27800.2 29.197 274 142 8 19 248 47 312 6.07e-26 105
Msa1368610 AT4G27800.3 29.197 274 142 8 19 248 47 312 7.85e-26 104
Msa1368610 AT5G59220.2 36.216 185 100 3 35 201 112 296 1.12e-25 103
Msa1368610 AT1G09160.2 30.894 246 142 9 54 278 57 295 1.29e-25 105
Msa1368610 AT1G09160.1 30.894 246 142 9 54 278 57 295 1.29e-25 105
Msa1368610 AT5G02760.1 30.451 266 135 9 26 247 32 291 2.23e-25 104
Msa1368610 AT1G47380.1 30.932 236 139 8 65 281 64 294 1.16e-24 103
Msa1368610 AT3G63320.1 27.273 319 134 8 62 283 66 383 3.54e-24 101
Msa1368610 AT5G19280.1 31.206 282 153 11 33 280 303 577 8.65e-24 101
Msa1368610 AT5G26010.1 35.681 213 105 8 65 247 73 283 1.69e-23 98.6
Msa1368610 AT2G20050.2 31.373 255 132 10 65 278 143 395 2.07e-23 100
Msa1368610 AT2G20050.1 31.373 255 132 10 65 278 143 395 2.41e-23 100
Msa1368610 AT3G06270.1 27.817 284 162 10 37 280 62 342 5.50e-23 97.4
Msa1368610 AT3G27140.1 31.513 238 105 4 47 278 1 186 9.77e-23 94.7
Msa1368610 AT3G23360.1 29.596 223 117 5 63 280 72 259 2.38e-22 94.0
Msa1368610 AT3G63340.12 30.081 246 112 8 100 286 207 451 4.09e-22 96.7
Msa1368610 AT3G63340.8 30.081 246 112 8 100 286 207 451 7.32e-22 96.3
Msa1368610 AT3G63340.11 30.081 246 112 8 100 286 207 451 7.79e-22 96.3
Msa1368610 AT3G63340.5 30.081 246 112 8 100 286 207 451 8.65e-22 95.9
Msa1368610 AT3G63340.1 30.081 246 112 8 100 286 207 451 8.65e-22 95.9
Msa1368610 AT3G63340.7 30.081 246 112 8 100 286 207 451 8.73e-22 95.9
Msa1368610 AT3G63340.6 30.081 246 112 8 100 286 207 451 9.32e-22 95.9
Msa1368610 AT3G63340.3 30.081 246 112 8 100 286 207 451 9.32e-22 95.9
Msa1368610 AT3G63340.10 30.081 246 112 8 100 286 207 451 9.32e-22 95.9
Msa1368610 AT3G63340.4 30.081 246 112 8 100 286 207 451 9.32e-22 95.9
Msa1368610 AT5G01700.1 32.707 266 125 11 67 284 31 290 1.02e-21 93.6
Msa1368610 AT3G17090.1 31.818 242 125 7 67 269 86 326 1.11e-21 94.4
Msa1368610 AT3G63320.2 29.630 243 111 7 100 283 59 300 1.91e-21 93.6
Msa1368610 AT5G01700.2 32.463 268 127 11 65 284 78 339 1.98e-21 93.6
Msa1368610 AT3G17090.2 32.273 220 110 6 67 247 86 305 3.61e-21 92.0
Msa1368610 AT3G51370.1 27.018 285 143 8 65 287 79 360 4.85e-21 92.4
Msa1368610 AT3G51370.3 27.018 285 143 8 65 287 79 360 4.85e-21 92.4
Msa1368610 AT4G32950.2 37.306 193 97 8 65 234 72 263 6.42e-21 90.5
Msa1368610 AT3G12620.2 28.912 294 143 10 60 291 78 367 1.11e-20 91.7
Msa1368610 AT3G12620.1 28.912 294 143 10 60 291 78 367 1.11e-20 91.7
Msa1368610 AT3G55050.1 29.710 276 129 10 65 278 84 356 2.33e-20 90.5
Msa1368610 AT3G55050.2 29.710 276 129 10 65 278 84 356 2.33e-20 90.5
Msa1368610 AT4G33920.1 29.758 289 135 12 67 290 63 348 2.77e-20 90.5
Msa1368610 AT1G79630.2 31.556 225 128 6 93 293 119 341 3.04e-20 90.5
Msa1368610 AT1G79630.7 31.556 225 128 6 93 293 119 341 3.04e-20 90.5
Msa1368610 AT1G79630.1 31.556 225 128 6 93 293 189 411 3.72e-20 90.9
Msa1368610 AT1G72770.2 33.023 215 93 6 35 201 190 401 3.72e-20 90.1
Msa1368610 AT1G72770.5 33.023 215 93 6 35 201 190 401 3.72e-20 90.1
Msa1368610 AT1G79630.8 31.556 225 128 6 93 293 185 407 4.40e-20 90.5
Msa1368610 AT1G79630.6 31.556 225 128 6 93 293 79 301 5.33e-20 89.7
Msa1368610 AT1G79630.3 31.556 225 128 6 93 293 79 301 5.33e-20 89.7
Msa1368610 AT1G79630.4 31.556 225 128 6 93 293 79 301 5.33e-20 89.7
Msa1368610 AT1G79630.5 31.556 225 128 6 93 293 79 301 5.33e-20 89.7
Msa1368610 AT5G66080.1 29.388 245 127 7 67 269 84 324 1.01e-19 88.6
Msa1368610 AT2G05050.1 28.151 238 114 5 47 278 1 187 1.74e-19 84.7
Msa1368610 AT5G06750.3 28.279 244 124 7 67 264 84 322 2.06e-19 87.8
Msa1368610 AT5G06750.1 28.279 244 124 7 67 264 84 322 2.06e-19 87.8
Msa1368610 AT1G03590.1 28.621 290 146 9 63 294 88 374 5.34e-19 87.0
Msa1368610 AT4G03415.1 31.535 241 110 9 61 247 93 332 2.41e-18 85.5
Msa1368610 AT4G03415.3 31.535 241 110 9 61 247 93 332 2.41e-18 85.5
Msa1368610 AT4G03415.2 31.535 241 110 9 61 247 93 332 2.41e-18 85.5
Msa1368610 AT4G38520.2 25.806 279 142 8 67 283 83 358 4.10e-18 84.3
Msa1368610 AT4G38520.1 25.806 279 142 8 67 283 83 358 4.10e-18 84.3
Msa1368610 AT5G36250.1 28.837 215 124 7 70 266 160 363 8.95e-18 83.6
Msa1368610 AT1G16220.1 29.717 212 126 5 93 282 166 376 1.23e-17 83.2
Msa1368610 AT3G02750.2 32.203 177 102 5 88 247 178 353 5.47e-17 81.3
Msa1368610 AT3G02750.1 32.203 177 102 5 88 247 178 353 5.47e-17 81.3
Msa1368610 AT3G63340.2 35.616 146 77 5 157 286 340 484 1.31e-15 77.8
Msa1368610 AT3G51370.2 27.907 215 103 5 125 287 61 275 3.43e-15 74.7
Msa1368610 AT3G16560.1 25.075 335 153 14 52 291 160 491 4.74e-13 69.7
Msa1368610 AT3G16560.4 25.075 335 153 14 52 291 160 491 4.74e-13 69.7
Msa1368610 AT3G16560.2 25.075 335 153 14 52 291 160 491 4.74e-13 69.7
Msa1368610 AT3G16560.3 26.280 293 139 13 52 270 160 449 5.54e-13 69.3
Msa1368610 AT5G36250.3 28.495 186 104 7 70 237 160 334 6.04e-12 65.9

Find 87 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTAGAGTTTCTTATTC+TGG 0.200352 tig0018650:-76081 Msa1368610:CDS
TAGACATATACCTGGATTTC+TGG 0.210715 tig0018650:+76486 None:intergenic
TTGTCGTCTTTGTTGTTCTT+AGG 0.213375 tig0018650:-75429 Msa1368610:three_prime_UTR
GAAATATTGCAGTTGTAATA+TGG 0.223036 tig0018650:-78667 Msa1368610:exon
TTCTGGCCAGTGACGGGCTT+TGG 0.240299 tig0018650:-76064 Msa1368610:CDS
CGCAATATACACATGAATTA+TGG 0.279299 tig0018650:-75387 Msa1368610:three_prime_UTR
TCTAACTGTGGCCGGCAAAT+TGG 0.294225 tig0018650:+75710 None:intergenic
GAACATACCTATTGCTGATT+TGG 0.300676 tig0018650:+77297 None:intergenic
TTGGTGTCAGAAATGAATTT+TGG 0.312849 tig0018650:+77316 None:intergenic
TCTGGCCAGTGACGGGCTTT+GGG 0.337499 tig0018650:-76063 Msa1368610:CDS
TCCTTTGCCTCTCATCAGTT+TGG 0.338012 tig0018650:+76698 None:intergenic
CGGTCAGCGGTGGCGGTCTC+AGG 0.349611 tig0018650:-78587 Msa1368610:intron
CTTGCTGTCTCTCGTGCATT+TGG 0.353349 tig0018650:-76543 Msa1368610:CDS
TGCCTCTCATCAGTTTGGTC+TGG 0.356443 tig0018650:+76703 None:intergenic
TGTCGTCTTTGTTGTTCTTA+GGG 0.371711 tig0018650:-75428 Msa1368610:three_prime_UTR
AATTTGCCGGCCACAGTTAG+AGG 0.373882 tig0018650:-75708 Msa1368610:exon
ATACAACAACTCTATTTAAC+AGG 0.378525 tig0018650:+75551 None:intergenic
GCCTCCTCTGCATCTTCAAT+CGG 0.383558 tig0018650:+75844 None:intergenic
ACCATCAACACCGTCAATTC+TGG 0.393237 tig0018650:+77872 None:intergenic
TCCATTGAAGATCTCTTGCC+AGG 0.411700 tig0018650:+77909 None:intergenic
CAAACGATCGCCAACTAGAA+TGG 0.427351 tig0018650:+77115 None:intergenic
TTCTTATTCTGGCCAGTGAC+GGG 0.427831 tig0018650:-76070 Msa1368610:CDS
TTGCAAATGTTGGAGACTCC+AGG 0.434546 tig0018650:-77088 Msa1368610:CDS
TTGATGTGTGTAAGGAGATT+AGG 0.441645 tig0018650:-75492 Msa1368610:three_prime_UTR
ATGCAGGAGGCTTTGTTATG+TGG 0.443560 tig0018650:-76669 Msa1368610:CDS
CACAATGGAAAGTTTAGCTA+TGG 0.445062 tig0018650:-77945 Msa1368610:CDS
AGTAGCTCCAACCAATTTGC+CGG 0.445567 tig0018650:-75721 Msa1368610:CDS
GATGGACCGGTCAGCGGTGG+CGG 0.451633 tig0018650:-78594 Msa1368610:CDS
CGTTTGCTTGTTGCAAATGT+TGG 0.452880 tig0018650:-77098 Msa1368610:CDS
TCTGACACCAAATCAGCAAT+AGG 0.457163 tig0018650:-77304 Msa1368610:intron
TATGGGTATGCTAGCTCGCC+TGG 0.469009 tig0018650:-77927 Msa1368610:CDS
AAATATTGCAGTTGTAATAT+GGG 0.474583 tig0018650:-78666 Msa1368610:exon
TGATTTCAGATATTCATTGT+CGG 0.476407 tig0018650:+77181 None:intergenic
TTTACAGGAACTTGGAGAGT+TGG 0.480844 tig0018650:-76573 Msa1368610:intron
CAGTTAGAGGGTTTGTGCAT+TGG 0.483398 tig0018650:-75695 Msa1368610:exon
GACATCCCAAAGCCCGTCAC+TGG 0.487456 tig0018650:+76058 None:intergenic
GGAGGCTTTGTTATGTGGGC+TGG 0.490873 tig0018650:-76664 Msa1368610:intron
GTTATATGCAGAGGCGGTAA+TGG 0.491548 tig0018650:-77062 Msa1368610:intron
TGCATCATACAAGAATATAC+AGG 0.503804 tig0018650:-75598 Msa1368610:three_prime_UTR
ACAGGAACTTGGAGAGTTGG+AGG 0.510331 tig0018650:-76570 Msa1368610:intron
ACCAGAATTGACGGTGTTGA+TGG 0.510608 tig0018650:-77873 Msa1368610:CDS
GCCTCTGCATATAACGGCCC+TGG 0.511126 tig0018650:+77070 None:intergenic
TTTCTTATTCTGGCCAGTGA+CGG 0.511376 tig0018650:-76071 Msa1368610:CDS
ATATCCAAACATTTCAAAAG+TGG 0.517630 tig0018650:-75661 Msa1368610:three_prime_UTR
GCCTGGCAAGAGATCTTCAA+TGG 0.518466 tig0018650:-77910 Msa1368610:CDS
CACATACCTAATTTGTAGCT+AGG 0.525653 tig0018650:-75522 Msa1368610:three_prime_UTR
TGTTGCTGATCCAGAAATCC+AGG 0.527506 tig0018650:-76496 Msa1368610:intron
AGGCAAAGGATTGAAGATGC+AGG 0.531055 tig0018650:-76685 Msa1368610:CDS
AACAACCATCACAAAGATGC+AGG 0.531101 tig0018650:-77155 Msa1368610:CDS
TGCAGGAGGCTTTGTTATGT+GGG 0.535770 tig0018650:-76668 Msa1368610:CDS
TACTATGAGAAGAAGTGCCT+TGG 0.536105 tig0018650:+75740 None:intergenic
TTGGGATGTCGTCTCAAATG+AGG 0.536571 tig0018650:-76045 Msa1368610:intron
CTGAGACCGCCACCGCTGAC+CGG 0.540884 tig0018650:+78588 None:intergenic
GGGTTTGTGCATTGGTGAAG+AGG 0.543482 tig0018650:-75687 Msa1368610:three_prime_UTR
GCATCTACCGCCATTCTAGT+TGG 0.543601 tig0018650:-77125 Msa1368610:CDS
TACCATCAAAGACTCCGAAA+AGG 0.557789 tig0018650:+77838 None:intergenic
CAGGTCCGTGCTATAGATGA+TGG 0.565112 tig0018650:-78612 Msa1368610:CDS
ACTGTGGCCGGCAAATTGGT+TGG 0.565632 tig0018650:+75714 None:intergenic
TAGATCCTGCATCTTTGTGA+TGG 0.566925 tig0018650:+77150 None:intergenic
CATCATCTATAGCACGGACC+TGG 0.569833 tig0018650:+78613 None:intergenic
ACCAAACTGATGAGAGGCAA+AGG 0.577056 tig0018650:-76699 Msa1368610:CDS
ATTACCGCCTCTGCATATAA+CGG 0.580883 tig0018650:+77064 None:intergenic
CCGTGCTATAGATGATGGAC+CGG 0.584948 tig0018650:-78607 Msa1368610:CDS
ACAAACCCTCTAACTGTGGC+CGG 0.590068 tig0018650:+75702 None:intergenic
ATTTGCCGGCCACAGTTAGA+GGG 0.591441 tig0018650:-75707 Msa1368610:exon
AGCACGGACCTGGCTTGTTG+AGG 0.592387 tig0018650:+78623 None:intergenic
ACAATGGAAAGTTTAGCTAT+GGG 0.597313 tig0018650:-77944 Msa1368610:CDS
TGCAAATGTTGGAGACTCCA+GGG 0.600937 tig0018650:-77087 Msa1368610:CDS
GTTCGTTTCTTGATGAACCA+AGG 0.602297 tig0018650:-75757 Msa1368610:CDS
TATGATGCACAACTACAAGA+TGG 0.608507 tig0018650:+75612 None:intergenic
TTTGTGCATTGGTGAAGAGG+TGG 0.609528 tig0018650:-75684 Msa1368610:three_prime_UTR
ACCGATTGAAGATGCAGAGG+AGG 0.613212 tig0018650:-75845 Msa1368610:CDS
TCCAGGGCCGTTATATGCAG+AGG 0.616040 tig0018650:-77071 Msa1368610:CDS
GATGATGGACCGGTCAGCGG+TGG 0.621402 tig0018650:-78597 Msa1368610:CDS
ATGCACAAACCCTCTAACTG+TGG 0.622547 tig0018650:+75698 None:intergenic
GGTGTTGATGGTGAAATCGT+TGG 0.626787 tig0018650:-77861 Msa1368610:CDS
ACTACTGCTGCATCTAAACA+TGG 0.630145 tig0018650:-75456 Msa1368610:three_prime_UTR
ATAGATGATGGACCGGTCAG+CGG 0.638923 tig0018650:-78600 Msa1368610:CDS
AGCCAGACCAAACTGATGAG+AGG 0.656558 tig0018650:-76705 Msa1368610:CDS
CCGGTCCATCATCTATAGCA+CGG 0.659296 tig0018650:+78607 None:intergenic
TAAACCGATTGAAGATGCAG+AGG 0.660296 tig0018650:-75848 Msa1368610:CDS
ATTTGTACATGTAGTCACAA+TGG 0.664058 tig0018650:-77960 Msa1368610:intron
TAAGAACAACAAAGACGACA+AGG 0.668701 tig0018650:+75431 None:intergenic
CAAAGGATTGAAGATGCAGG+AGG 0.695208 tig0018650:-76682 Msa1368610:CDS
AGGGCCGTTATATGCAGAGG+CGG 0.697345 tig0018650:-77068 Msa1368610:CDS
ACGATCGCCAACTAGAATGG+CGG 0.716614 tig0018650:+77118 None:intergenic
ATGCAAGAAGCATATCAGAG+AGG 0.726307 tig0018650:-75808 Msa1368610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATAAATATTATTTTTAC+AGG - tig0018650:77521-77540 Msa1368610:intron 10.0%
!!! TAAATTTTATACATAAGTTG+TGG - tig0018650:76018-76037 Msa1368610:intron 15.0%
!!! AAATTTTATACATAAGTTGT+GGG - tig0018650:76019-76038 Msa1368610:intron 15.0%
!! AATATGAAATAATTCTTACA+CGG + tig0018650:76669-76688 None:intergenic 15.0%
!! TTATAGACAAGTTTATATAT+AGG + tig0018650:76699-76718 None:intergenic 15.0%
!! AACTTAATTATTTCGAATTT+AGG + tig0018650:78131-78150 None:intergenic 15.0%
!! AAATATTGCAGTTGTAATAT+GGG - tig0018650:75443-75462 Msa1368610:three_prime_UTR 20.0%
!! ACTAAACAATTATTCCTATA+TGG + tig0018650:76615-76634 None:intergenic 20.0%
!! GTGTAAGAATTATTTCATAT+TGG - tig0018650:76668-76687 Msa1368610:CDS 20.0%
!!! ATATTATTTTTACAGGAACT+TGG - tig0018650:77528-77547 Msa1368610:intron 20.0%
!! ACAAGGTTAATTATAGAATA+AGG + tig0018650:77802-77821 None:intergenic 20.0%
!!! CTTCTAGTTAAAAACTAATT+TGG - tig0018650:77842-77861 Msa1368610:CDS 20.0%
!! TTAATTATTTCGAATTTAGG+TGG + tig0018650:78128-78147 None:intergenic 20.0%
!!! TAACATTTTAAGCATTTTTC+AGG - tig0018650:78222-78241 Msa1368610:intron 20.0%
! GAAATATTGCAGTTGTAATA+TGG - tig0018650:75442-75461 Msa1368610:three_prime_UTR 25.0%
!! ATATGCAAATCAACACATTT+TGG + tig0018650:75572-75591 None:intergenic 25.0%
! ATAATATCTTGAATGCATGT+TGG + tig0018650:75619-75638 None:intergenic 25.0%
!!! ATTCAAGAGAAAGTTGTTTT+GGG + tig0018650:75810-75829 None:intergenic 25.0%
!! TATTCAAGAGAAAGTTGTTT+TGG + tig0018650:75811-75830 None:intergenic 25.0%
!! CAATTTTCTCCTTAGATTAT+AGG - tig0018650:75864-75883 Msa1368610:CDS 25.0%
!! CGTTAACGTATTCAATTTTT+CGG + tig0018650:75896-75915 None:intergenic 25.0%
! CGAAAAATTGAATACGTTAA+CGG - tig0018650:75894-75913 Msa1368610:intron 25.0%
!! AAAAAACTAGTCTGTGTTAT+AGG - tig0018650:75951-75970 Msa1368610:intron 25.0%
!!! TTGGATTCATTCATTGATTT+GGG - tig0018650:76066-76085 Msa1368610:CDS 25.0%
!!! TTTCTCTAATTTTTTTCTCC+TGG - tig0018650:76306-76325 Msa1368610:intron 25.0%
!! TGTAAGCAATGGAAAATTTT+TGG + tig0018650:76423-76442 None:intergenic 25.0%
! TTTCCATTGCTTACAATATT+CGG - tig0018650:76428-76447 Msa1368610:intron 25.0%
! GTTCAAAAATAACAACAAAG+AGG + tig0018650:76581-76600 None:intergenic 25.0%
! TTATTCCTATATGGAATAAC+TGG + tig0018650:76606-76625 None:intergenic 25.0%
!! AACTTGTCTATAACTCTTTT+AGG - tig0018650:76706-76725 Msa1368610:CDS 25.0%
! GAAAAGCAAGAGTTATTATA+TGG + tig0018650:76885-76904 None:intergenic 25.0%
! TGATTTCAGATATTCATTGT+CGG + tig0018650:76931-76950 None:intergenic 25.0%
! AAGTTATCTTCGTAGATTTA+TGG - tig0018650:77733-77752 Msa1368610:intron 25.0%
! ATTTATGGAATATGTGGATA+AGG - tig0018650:77748-77767 Msa1368610:intron 25.0%
! TAAGGATAAATGACAAACAT+TGG + tig0018650:77784-77803 None:intergenic 25.0%
! TTACAATTGTTACTAGTTCA+TGG + tig0018650:77882-77901 None:intergenic 25.0%
! TCATGTATGATCTTTATTCT+GGG - tig0018650:77917-77936 Msa1368610:CDS 25.0%
! GCTTAAAATGTTAAACAAGT+TGG + tig0018650:78215-78234 None:intergenic 25.0%
! ATATCCAAACATTTCAAAAG+TGG - tig0018650:78448-78467 Msa1368610:intron 25.0%
!!! TTTTCCACTTTTGAAATGTT+TGG + tig0018650:78455-78474 None:intergenic 25.0%
! ATACAACAACTCTATTTAAC+AGG + tig0018650:78561-78580 None:intergenic 25.0%
!! ATTTTTCCTAGCTACAAATT+AGG + tig0018650:78596-78615 None:intergenic 25.0%
! GAAAAATATTGATGTGTGTA+AGG - tig0018650:78609-78628 Msa1368610:CDS 25.0%
! GTGCTTTTCTTTCATCATTT+TGG - tig0018650:75408-75427 Msa1368610:three_prime_UTR 30.0%
AAGTAGTTGTACACAAAAGA+TGG - tig0018650:75735-75754 Msa1368610:CDS 30.0%
! TACTTTTAGACATCATTGCT+TGG - tig0018650:76047-76066 Msa1368610:CDS 30.0%
! CTTGGATTCATTCATTGATT+TGG - tig0018650:76065-76084 Msa1368610:CDS 30.0%
!! TGGATTCATTCATTGATTTG+GGG - tig0018650:76067-76086 Msa1368610:CDS 30.0%
ATTTGTACATGTAGTCACAA+TGG - tig0018650:76149-76168 Msa1368610:intron 30.0%
ACAATGGAAAGTTTAGCTAT+GGG - tig0018650:76165-76184 Msa1368610:intron 30.0%
! TTTTATGAGACCAGAATTGA+CGG - tig0018650:76227-76246 Msa1368610:intron 30.0%
! ATTCCCTTGTGAAAGATTTT+CGG + tig0018650:76355-76374 None:intergenic 30.0%
TTTCCGAATATTGTAAGCAA+TGG + tig0018650:76434-76453 None:intergenic 30.0%
CCTTCAAAAAAATTCTTTCG+CGG + tig0018650:76503-76522 None:intergenic 30.0%
CCAACAAAAGGTTTGTAAAT+TGG + tig0018650:76530-76549 None:intergenic 30.0%
! CCAATTTACAAACCTTTTGT+TGG - tig0018650:76527-76546 Msa1368610:CDS 30.0%
CAAAAATAACAACAAAGAGG+AGG + tig0018650:76578-76597 None:intergenic 30.0%
!! TCTATAACTCTTTTAGGTCA+TGG - tig0018650:76712-76731 Msa1368610:CDS 30.0%
!! TGGTGTCAGAAATGAATTTT+GGG + tig0018650:76795-76814 None:intergenic 30.0%
!!! TTGGTGTCAGAAATGAATTT+TGG + tig0018650:76796-76815 None:intergenic 30.0%
CATTCTACTTCTACATAAGA+AGG + tig0018650:77321-77340 None:intergenic 30.0%
TCGTAGATTTATGGAATATG+TGG - tig0018650:77742-77761 Msa1368610:intron 30.0%
CTCAAAAATGCTATTGTACA+AGG + tig0018650:77819-77838 None:intergenic 30.0%
GTCATGTATGATCTTTATTC+TGG - tig0018650:77916-77935 Msa1368610:CDS 30.0%
!! TTCTCTAGAGTTTCTTATTC+TGG - tig0018650:78028-78047 Msa1368610:intron 30.0%
TATTTCGAATTTAGGTGGTT+AGG + tig0018650:78123-78142 None:intergenic 30.0%
TGCATCATACAAGAATATAC+AGG - tig0018650:78511-78530 Msa1368610:intron 30.0%
ATGCATGTTGGCAAATGATA+CGG + tig0018650:75607-75626 None:intergenic 35.0%
!! GGATTCATTCATTGATTTGG+GGG - tig0018650:76068-76087 Msa1368610:CDS 35.0%
CACAATGGAAAGTTTAGCTA+TGG - tig0018650:76164-76183 Msa1368610:intron 35.0%
TTTCCAATCAAAATTCGACC+AGG + tig0018650:76327-76346 None:intergenic 35.0%
TATGCCGAAAATCTTTCACA+AGG - tig0018650:76348-76367 Msa1368610:intron 35.0%
ATGCCGAAAATCTTTCACAA+GGG - tig0018650:76349-76368 Msa1368610:intron 35.0%
TCAAAAAAATTCTTTCGCGG+TGG + tig0018650:76500-76519 None:intergenic 35.0%
!!! CCGCGAAAGAATTTTTTTGA+AGG - tig0018650:76500-76519 Msa1368610:CDS 35.0%
TCTTGTCTTTAGCCAACAAA+AGG + tig0018650:76542-76561 None:intergenic 35.0%
AACCTCCAGTTATTCCATAT+AGG - tig0018650:76598-76617 Msa1368610:intron 35.0%
TTCCTATATGGAATAACTGG+AGG + tig0018650:76603-76622 None:intergenic 35.0%
! TCTTACACGGTTTATTTCTC+AGG + tig0018650:76656-76675 None:intergenic 35.0%
!! ATAACTCTTTTAGGTCATGG+CGG - tig0018650:76715-76734 Msa1368610:CDS 35.0%
! GAACATACCTATTGCTGATT+TGG + tig0018650:76815-76834 None:intergenic 35.0%
ATGATTATATGCATCAGCTG+TGG + tig0018650:76907-76926 None:intergenic 35.0%
TGTTAGTGCACGAGTAAAAA+TGG - tig0018650:77223-77242 Msa1368610:intron 35.0%
TAGACATATACCTGGATTTC+TGG + tig0018650:77626-77645 None:intergenic 35.0%
ATCCAGGTATATGTCTACTA+TGG - tig0018650:77629-77648 Msa1368610:intron 35.0%
AACCATAGTAGACATATACC+TGG + tig0018650:77634-77653 None:intergenic 35.0%
CCACATGAAATAGTCAAGAA+TGG + tig0018650:77665-77684 None:intergenic 35.0%
CCATTCTTGACTATTTCATG+TGG - tig0018650:77662-77681 Msa1368610:intron 35.0%
ACAAACAGACTCATGTACAA+AGG + tig0018650:77710-77729 None:intergenic 35.0%
GTTACTAGTTCATGGCAAAT+TGG + tig0018650:77874-77893 None:intergenic 35.0%
! TTGCATGATTGTGATTTTGC+AGG - tig0018650:77989-78008 Msa1368610:intron 35.0%
TTAAGTTCCTCTAGTAGAGT+TGG - tig0018650:78144-78163 Msa1368610:intron 35.0%
TATGATGCACAACTACAAGA+TGG + tig0018650:78500-78519 None:intergenic 35.0%
! CACATACCTAATTTGTAGCT+AGG - tig0018650:78587-78606 Msa1368610:intron 35.0%
TTGATGTGTGTAAGGAGATT+AGG - tig0018650:78617-78636 Msa1368610:CDS 35.0%
TAAGAACAACAAAGACGACA+AGG + tig0018650:78681-78700 None:intergenic 35.0%
!! TTGTCGTCTTTGTTGTTCTT+AGG - tig0018650:78680-78699 Msa1368610:five_prime_UTR 35.0%
!! TGTCGTCTTTGTTGTTCTTA+GGG - tig0018650:78681-78700 Msa1368610:five_prime_UTR 35.0%
CGGACACAACCTATAATCTA+AGG + tig0018650:75876-75895 None:intergenic 40.0%
CTAGTCTGTGTTATAGGTTG+AGG - tig0018650:75957-75976 Msa1368610:intron 40.0%
!! TCATTGATTTGGGGGAAAAG+AGG - tig0018650:76076-76095 Msa1368610:CDS 40.0%
!! CATTGATTTGGGGGAAAAGA+GGG - tig0018650:76077-76096 Msa1368610:CDS 40.0%
TACCATCAAAGACTCCGAAA+AGG + tig0018650:76274-76293 None:intergenic 40.0%
!! TCTCCTGGTCGAATTTTGAT+TGG - tig0018650:76321-76340 Msa1368610:intron 40.0%
TTCACAAGGGAATCATGTCA+TGG - tig0018650:76362-76381 Msa1368610:intron 40.0%
TCTGACACCAAATCAGCAAT+AGG - tig0018650:76805-76824 Msa1368610:intron 40.0%
AACAACCATCACAAAGATGC+AGG - tig0018650:76954-76973 Msa1368610:intron 40.0%
TAGATCCTGCATCTTTGTGA+TGG + tig0018650:76962-76981 None:intergenic 40.0%
! CGTTTGCTTGTTGCAAATGT+TGG - tig0018650:77011-77030 Msa1368610:intron 40.0%
ATTACCGCCTCTGCATATAA+CGG + tig0018650:77048-77067 None:intergenic 40.0%
! TACAAGAAAGCACGATTGGA+AGG + tig0018650:77359-77378 None:intergenic 40.0%
! TTGCTACAAGAAAGCACGAT+TGG + tig0018650:77363-77382 None:intergenic 40.0%
TTTACAGGAACTTGGAGAGT+TGG - tig0018650:77536-77555 Msa1368610:intron 40.0%
TTTCTTATTCTGGCCAGTGA+CGG - tig0018650:78038-78057 Msa1368610:intron 40.0%
TTAGGTGGTTAGGATGTGAA+AGG + tig0018650:78113-78132 None:intergenic 40.0%
AGACTATCCAACTCTACTAG+AGG + tig0018650:78154-78173 None:intergenic 40.0%
!!! AGCATTTTTCAGGAAGCTGT+TGG - tig0018650:78232-78251 Msa1368610:intron 40.0%
TAAACCGATTGAAGATGCAG+AGG - tig0018650:78261-78280 Msa1368610:intron 40.0%
! ATGCAAGAAGCATATCAGAG+AGG - tig0018650:78301-78320 Msa1368610:intron 40.0%
GTTCGTTTCTTGATGAACCA+AGG - tig0018650:78352-78371 Msa1368610:intron 40.0%
!! TACTATGAGAAGAAGTGCCT+TGG + tig0018650:78372-78391 None:intergenic 40.0%
ACTACTGCTGCATCTAAACA+TGG - tig0018650:78653-78672 Msa1368610:exon 40.0%
!! AGTTTTGTCCTCAACAAGCC+AGG - tig0018650:75478-75497 Msa1368610:three_prime_UTR 45.0%
TCCATTGAAGATCTCTTGCC+AGG + tig0018650:76203-76222 None:intergenic 45.0%
! ACCAGAATTGACGGTGTTGA+TGG - tig0018650:76236-76255 Msa1368610:intron 45.0%
ACCATCAACACCGTCAATTC+TGG + tig0018650:76240-76259 None:intergenic 45.0%
!! GGTGTTGATGGTGAAATCGT+TGG - tig0018650:76248-76267 Msa1368610:intron 45.0%
!!! GGTGAAATCGTTGGCCTTTT+CGG - tig0018650:76257-76276 Msa1368610:intron 45.0%
CAAACGATCGCCAACTAGAA+TGG + tig0018650:76997-77016 None:intergenic 45.0%
TTGCAAATGTTGGAGACTCC+AGG - tig0018650:77021-77040 Msa1368610:intron 45.0%
TGCAAATGTTGGAGACTCCA+GGG - tig0018650:77022-77041 Msa1368610:intron 45.0%
GTTATATGCAGAGGCGGTAA+TGG - tig0018650:77047-77066 Msa1368610:intron 45.0%
AGTGCACGAGTAAAAATGGC+AGG - tig0018650:77227-77246 Msa1368610:intron 45.0%
GTGCACGAGTAAAAATGGCA+GGG - tig0018650:77228-77247 Msa1368610:intron 45.0%
ACCAAACTGATGAGAGGCAA+AGG - tig0018650:77410-77429 Msa1368610:intron 45.0%
TCCTTTGCCTCTCATCAGTT+TGG + tig0018650:77414-77433 None:intergenic 45.0%
AGGCAAAGGATTGAAGATGC+AGG - tig0018650:77424-77443 Msa1368610:intron 45.0%
CAAAGGATTGAAGATGCAGG+AGG - tig0018650:77427-77446 Msa1368610:intron 45.0%
!! ATGCAGGAGGCTTTGTTATG+TGG - tig0018650:77440-77459 Msa1368610:intron 45.0%
!! TGCAGGAGGCTTTGTTATGT+GGG - tig0018650:77441-77460 Msa1368610:intron 45.0%
!! CTTTGTTATGTGGGCTGGTA+AGG - tig0018650:77450-77469 Msa1368610:intron 45.0%
TGTTGCTGATCCAGAAATCC+AGG - tig0018650:77613-77632 Msa1368610:intron 45.0%
CAGACTCATGTACAAAGGAC+AGG + tig0018650:77705-77724 None:intergenic 45.0%
TTCTTATTCTGGCCAGTGAC+GGG - tig0018650:78039-78058 Msa1368610:intron 45.0%
TTGGGATGTCGTCTCAAATG+AGG - tig0018650:78064-78083 Msa1368610:intron 45.0%
AGTAGCTCCAACCAATTTGC+CGG - tig0018650:78388-78407 Msa1368610:intron 45.0%
ATGCACAAACCCTCTAACTG+TGG + tig0018650:78414-78433 None:intergenic 45.0%
CAGTTAGAGGGTTTGTGCAT+TGG - tig0018650:78414-78433 Msa1368610:intron 45.0%
! TTTGTGCATTGGTGAAGAGG+TGG - tig0018650:78425-78444 Msa1368610:intron 45.0%
CATCATCTATAGCACGGACC+TGG + tig0018650:75499-75518 None:intergenic 50.0%
CAGGTCCGTGCTATAGATGA+TGG - tig0018650:75497-75516 Msa1368610:three_prime_UTR 50.0%
CCGGTCCATCATCTATAGCA+CGG + tig0018650:75505-75524 None:intergenic 50.0%
!! CCGTGCTATAGATGATGGAC+CGG - tig0018650:75502-75521 Msa1368610:three_prime_UTR 50.0%
!! ATAGATGATGGACCGGTCAG+CGG - tig0018650:75509-75528 Msa1368610:three_prime_UTR 50.0%
GCCTGGCAAGAGATCTTCAA+TGG - tig0018650:76199-76218 Msa1368610:intron 50.0%
! GGCCTTTTCGGAGTCTTTGA+TGG - tig0018650:76269-76288 Msa1368610:intron 50.0%
CATAAAGACCATGCAGCGAC+AGG + tig0018650:76844-76863 None:intergenic 50.0%
GCATCTACCGCCATTCTAGT+TGG - tig0018650:76984-77003 Msa1368610:intron 50.0%
ACGATCGCCAACTAGAATGG+CGG + tig0018650:76994-77013 None:intergenic 50.0%
AGCCAGACCAAACTGATGAG+AGG - tig0018650:77404-77423 Msa1368610:intron 50.0%
TGCCTCTCATCAGTTTGGTC+TGG + tig0018650:77409-77428 None:intergenic 50.0%
ACAGGAACTTGGAGAGTTGG+AGG - tig0018650:77539-77558 Msa1368610:intron 50.0%
! CTTGCTGTCTCTCGTGCATT+TGG - tig0018650:77566-77585 Msa1368610:intron 50.0%
ACCGATTGAAGATGCAGAGG+AGG - tig0018650:78264-78283 Msa1368610:intron 50.0%
GCCTCCTCTGCATCTTCAAT+CGG + tig0018650:78268-78287 None:intergenic 50.0%
TCTAACTGTGGCCGGCAAAT+TGG + tig0018650:78402-78421 None:intergenic 50.0%
AATTTGCCGGCCACAGTTAG+AGG - tig0018650:78401-78420 Msa1368610:intron 50.0%
ATTTGCCGGCCACAGTTAGA+GGG - tig0018650:78402-78421 Msa1368610:intron 50.0%
ACAAACCCTCTAACTGTGGC+CGG + tig0018650:78410-78429 None:intergenic 50.0%
! GGGTTTGTGCATTGGTGAAG+AGG - tig0018650:78422-78441 Msa1368610:intron 50.0%
TATGGGTATGCTAGCTCGCC+TGG - tig0018650:76182-76201 Msa1368610:intron 55.0%
AAAGACCATGCAGCGACAGG+TGG + tig0018650:76841-76860 None:intergenic 55.0%
TCCAGGGCCGTTATATGCAG+AGG - tig0018650:77038-77057 Msa1368610:intron 55.0%
AGGGCCGTTATATGCAGAGG+CGG - tig0018650:77041-77060 Msa1368610:intron 55.0%
!! GGAGGCTTTGTTATGTGGGC+TGG - tig0018650:77445-77464 Msa1368610:intron 55.0%
ACTGTGGCCGGCAAATTGGT+TGG + tig0018650:78398-78417 None:intergenic 55.0%
!! AGCACGGACCTGGCTTGTTG+AGG + tig0018650:75489-75508 None:intergenic 60.0%
TTTCGCGGTGGCAGAGAACG+AGG + tig0018650:76488-76507 None:intergenic 60.0%
TCTCTCCACCTGTCGCTGCA+TGG - tig0018650:76833-76852 Msa1368610:intron 60.0%
GCCTCTGCATATAACGGCCC+TGG + tig0018650:77042-77061 None:intergenic 60.0%
!! TTCTGGCCAGTGACGGGCTT+TGG - tig0018650:78045-78064 Msa1368610:intron 60.0%
!! TCTGGCCAGTGACGGGCTTT+GGG - tig0018650:78046-78065 Msa1368610:intron 60.0%
GACATCCCAAAGCCCGTCAC+TGG + tig0018650:78054-78073 None:intergenic 60.0%
!! GATGATGGACCGGTCAGCGG+TGG - tig0018650:75512-75531 Msa1368610:three_prime_UTR 65.0%
GATGGACCGGTCAGCGGTGG+CGG - tig0018650:75515-75534 Msa1368610:three_prime_UTR 70.0%
CTGAGACCGCCACCGCTGAC+CGG + tig0018650:75524-75543 None:intergenic 70.0%
! CGGTCAGCGGTGGCGGTCTC+AGG - tig0018650:75522-75541 Msa1368610:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
tig0018650 gene 75387 78744 75387 ID=Msa1368610;Name=Msa1368610
tig0018650 mRNA 75387 78744 75387 ID=Msa1368610-mRNA-1;Parent=Msa1368610;Name=Msa1368610-mRNA-1;_AED=0.06;_eAED=0.06;_QI=74|1|1|1|1|1|8|324|299
tig0018650 exon 75387 75887 75387 ID=Msa1368610-mRNA-1:exon:530;Parent=Msa1368610-mRNA-1
tig0018650 exon 76046 76120 76046 ID=Msa1368610-mRNA-1:exon:529;Parent=Msa1368610-mRNA-1
tig0018650 exon 76497 76588 76497 ID=Msa1368610-mRNA-1:exon:528;Parent=Msa1368610-mRNA-1
tig0018650 exon 76665 76751 76665 ID=Msa1368610-mRNA-1:exon:527;Parent=Msa1368610-mRNA-1
tig0018650 exon 77063 77221 77063 ID=Msa1368610-mRNA-1:exon:526;Parent=Msa1368610-mRNA-1
tig0018650 exon 77305 77403 77305 ID=Msa1368610-mRNA-1:exon:525;Parent=Msa1368610-mRNA-1
tig0018650 exon 77841 77968 77841 ID=Msa1368610-mRNA-1:exon:524;Parent=Msa1368610-mRNA-1
tig0018650 exon 78588 78744 78588 ID=Msa1368610-mRNA-1:exon:523;Parent=Msa1368610-mRNA-1
tig0018650 five_prime_UTR 78671 78744 78671 ID=Msa1368610-mRNA-1:five_prime_utr;Parent=Msa1368610-mRNA-1
tig0018650 CDS 78588 78670 78588 ID=Msa1368610-mRNA-1:cds;Parent=Msa1368610-mRNA-1
tig0018650 CDS 77841 77968 77841 ID=Msa1368610-mRNA-1:cds;Parent=Msa1368610-mRNA-1
tig0018650 CDS 77305 77403 77305 ID=Msa1368610-mRNA-1:cds;Parent=Msa1368610-mRNA-1
tig0018650 CDS 77063 77221 77063 ID=Msa1368610-mRNA-1:cds;Parent=Msa1368610-mRNA-1
tig0018650 CDS 76665 76751 76665 ID=Msa1368610-mRNA-1:cds;Parent=Msa1368610-mRNA-1
tig0018650 CDS 76497 76588 76497 ID=Msa1368610-mRNA-1:cds;Parent=Msa1368610-mRNA-1
tig0018650 CDS 76046 76120 76046 ID=Msa1368610-mRNA-1:cds;Parent=Msa1368610-mRNA-1
tig0018650 CDS 75711 75887 75711 ID=Msa1368610-mRNA-1:cds;Parent=Msa1368610-mRNA-1
tig0018650 three_prime_UTR 75387 75710 75387 ID=Msa1368610-mRNA-1:three_prime_utr;Parent=Msa1368610-mRNA-1
Gene Sequence

>Msa1368610

ATGGGATATCTCAATTCAGTTTTGTCCTCAACAAGCCAGGTCCGTGCTATAGATGATGGACCGGTCAGCGGTGGCGGTCTCAGTCACAATGGAAAGTTTAGCTATGGGTATGCTAGCTCGCCTGGCAAGAGATCTTCAATGGAAGATTTTTATGAGACCAGAATTGACGGTGTTGATGGTGAAATCGTTGGCCTTTTCGGAGTCTTTGATGGTCATGGCGGTGTTCGTGCAGCTGAGTATGTTAAGCAAAACTTGTTTAGCAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAGCTGATGCATATAATCATACCGACAATGAATATCTGAAATCAGAAAACAACCATCACAAAGATGCAGGATCTACTGCATCTACCGCCATTCTAGTTGGCGATCGTTTGCTTGTTGCAAATGTTGGAGACTCCAGGGCCGTTATATGCAGAGGCGGTAATGCAATTGCTGTTTCTCGAGATCATAAGCCAGACCAAACTGATGAGAGGCAAAGGATTGAAGATGCAGGAGGCTTTGTTATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTCTCTCGTGCATTTGGTGATAGACTCTTGAAGCAGTATGTTGTTGCTGATCCAGAAATCCAGGAAGAAAAAGTTGATAGTTCTCTAGAGTTTCTTATTCTGGCCAGTGACGGGCTTTGGGATGTCGTCTCAAATGAGGAAGCTGTTGGTATGATTAAACCGATTGAAGATGCAGAGGAGGCAGCAAAGAGACTGATGCAAGAAGCATATCAGAGAGGTAGTGCTGACAATATCACTTGTGTCGTTGTTCGTTTCTTGATGAACCAAGGCACTTCTTCTCATAGTAGCTCCAACCAATTTGCCGGCCACAGTTAG
Protein sequence

>Msa1368610

MGYLNSVLSSTSQVRAIDDGPVSGGGLSHNGKFSYGYASSPGKRSSMEDFYETRIDGVDGEIVGLFGVFDGHGGVRAAEYVKQNLFSNLISHPKFISDTKSAIADAYNHTDNEYLKSENNHHKDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDSSLEFLILASDGLWDVVSNEEAVGMIKPIEDAEEAAKRLMQEAYQRGSADNITCVVVRFLMNQGTSSHSSSNQFAGHS*