AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0431900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0431900 MtrunA17_Chr3g0136711 99.666 299 1 0 1 299 1 299 0.0 613
Msa0431900 MtrunA17_Chr1g0150451 92.150 293 22 1 1 292 44 336 0.0 556
Msa0431900 MtrunA17_Chr1g0212961 65.918 267 82 3 19 280 75 337 6.59e-128 368
Msa0431900 MtrunA17_Chr3g0126511 61.686 261 100 0 20 280 80 340 7.28e-115 335
Msa0431900 MtrunA17_Chr4g0050381 47.170 265 127 6 23 280 18 276 8.95e-69 215
Msa0431900 MtrunA17_Chr2g0279151 45.660 265 131 6 23 280 22 280 2.36e-68 214
Msa0431900 MtrunA17_Chr3g0115851 42.958 284 155 5 1 280 1 281 3.52e-67 211
Msa0431900 MtrunA17_Chr5g0426141 41.901 284 158 5 1 280 1 281 7.12e-67 210
Msa0431900 MtrunA17_Chr8g0360351 45.283 265 137 6 21 280 20 281 6.14e-65 205
Msa0431900 MtrunA17_Chr2g0317021 43.396 265 142 6 21 280 71 332 9.42e-63 201
Msa0431900 MtrunA17_Chr3g0105371 42.339 248 130 4 42 280 95 338 3.10e-60 195
Msa0431900 MtrunA17_Chr4g0051661 42.857 252 136 5 33 280 150 397 3.08e-59 194
Msa0431900 MtrunA17_Chr3g0105351 41.129 248 133 4 42 280 71 314 3.29e-58 189
Msa0431900 MtrunA17_Chr5g0430481 39.216 255 142 4 35 280 124 374 7.12e-54 179
Msa0431900 MtrunA17_Chr1g0171571 40.075 267 146 7 33 287 386 650 8.50e-48 169
Msa0431900 MtrunA17_Chr1g0150781 36.424 302 134 7 35 278 240 541 1.56e-46 164
Msa0431900 MtrunA17_Chr3g0112291 33.333 312 171 3 19 293 77 388 5.12e-46 159
Msa0431900 MtrunA17_Chr5g0407161 37.500 264 141 7 36 280 87 345 1.61e-45 158
Msa0431900 MtrunA17_Chr2g0299981 32.102 352 148 8 15 278 185 533 1.28e-44 159
Msa0431900 MtrunA17_Chr4g0070871 39.130 253 111 6 65 278 253 501 3.38e-44 157
Msa0431900 MtrunA17_Chr5g0435721 40.351 228 122 3 35 248 193 420 1.83e-43 154
Msa0431900 MtrunA17_Chr3g0135961 34.528 307 138 7 35 278 231 537 7.26e-42 151
Msa0431900 MtrunA17_Chr1g0194191 31.464 321 182 10 7 294 49 364 8.77e-42 148
Msa0431900 MtrunA17_Chr4g0065141 35.983 239 136 4 56 280 115 350 1.52e-40 145
Msa0431900 MtrunA17_Chr8g0389921 34.694 294 144 10 29 278 143 432 5.28e-40 145
Msa0431900 MtrunA17_Chr5g0396731 35.563 284 149 8 34 284 72 354 5.88e-40 142
Msa0431900 MtrunA17_Chr1g0158781 38.148 270 140 6 33 278 111 377 9.28e-40 143
Msa0431900 MtrunA17_Chr3g0138281 36.296 270 147 8 32 280 80 345 2.45e-39 141
Msa0431900 MtrunA17_Chr2g0293811 30.945 307 162 9 9 278 36 329 7.35e-38 137
Msa0431900 MtrunA17_Chr6g0483411 34.420 276 149 8 38 283 48 321 9.20e-38 136
Msa0431900 MtrunA17_Chr3g0144111 37.885 227 106 6 64 280 26 227 1.77e-36 131
Msa0431900 MtrunA17_Chr1g0150071 31.045 335 155 13 30 294 19 347 1.24e-34 129
Msa0431900 MtrunA17_Chr4g0001761 28.329 353 171 10 8 294 5 341 3.56e-34 127
Msa0431900 MtrunA17_Chr3g0136811 29.882 338 161 12 29 296 18 349 6.17e-33 124
Msa0431900 MtrunA17_Chr3g0127091 27.362 307 167 8 19 277 48 346 1.48e-28 113
Msa0431900 MtrunA17_Chr4g0066371 29.712 313 167 12 28 293 44 350 1.28e-27 110
Msa0431900 MtrunA17_Chr1g0192421 33.750 240 114 11 67 264 91 327 9.22e-27 107
Msa0431900 MtrunA17_Chr1g0187481 29.333 225 142 4 56 280 70 277 9.35e-27 105
Msa0431900 MtrunA17_Chr7g0243571 29.720 286 143 7 65 293 92 376 1.90e-26 107
Msa0431900 MtrunA17_Chr1g0209451 31.373 255 146 10 48 278 46 295 6.15e-26 106
Msa0431900 MtrunA17_Chr7g0272061 30.142 282 137 10 67 291 93 371 6.93e-26 105
Msa0431900 MtrunA17_Chr2g0286951 29.206 315 169 12 28 295 45 352 1.02e-25 105
Msa0431900 MtrunA17_Chr7g0271971 32.114 246 139 8 54 278 57 295 1.78e-25 105
Msa0431900 MtrunA17_Chr7g0256751 31.474 251 131 7 65 275 69 318 5.39e-25 103
Msa0431900 MtrunA17_Chr1g0153671 31.381 239 140 8 65 284 65 298 2.93e-24 101
Msa0431900 MtrunA17_Chr1g0151781 37.634 186 93 6 82 251 114 292 3.92e-24 100
Msa0431900 MtrunA17_Chr7g0225501 34.008 247 137 13 54 278 75 317 4.92e-24 101
Msa0431900 MtrunA17_Chr4g0004971 32.117 274 135 11 60 283 72 344 6.80e-24 99.8
Msa0431900 MtrunA17_Chr7g0263281 30.522 249 124 8 45 247 47 292 1.60e-23 99.0
Msa0431900 MtrunA17_Chr4g0067711 37.107 159 82 5 125 266 174 331 1.67e-23 98.6
Msa0431900 MtrunA17_Chr2g0295401 30.712 267 137 10 61 280 88 353 1.72e-23 98.6
Msa0431900 MtrunA17_Chr1g0192471 29.719 249 147 8 54 281 57 298 3.24e-23 98.6
Msa0431900 MtrunA17_Chr1g0213351 30.662 287 133 11 55 278 69 352 4.06e-23 97.8
Msa0431900 MtrunA17_Chr3g0133801 30.126 239 143 8 65 284 66 299 5.38e-23 98.2
Msa0431900 MtrunA17_Chr5g0394181 31.142 289 151 13 29 280 320 597 1.03e-22 98.2
Msa0431900 MtrunA17_Chr7g0256771 30.502 259 131 9 31 248 42 292 2.12e-22 94.7
Msa0431900 MtrunA17_Chr3g0089711 29.348 276 143 11 31 264 40 305 2.35e-22 95.5
Msa0431900 MtrunA17_Chr6g0486661 29.044 272 148 10 65 292 124 394 2.66e-22 97.1
Msa0431900 MtrunA17_Chr1g0166481 28.505 214 132 3 67 280 81 273 3.00e-22 93.6
Msa0431900 MtrunA17_Chr1g0181901 28.897 263 135 8 31 247 41 297 3.69e-22 95.5
Msa0431900 MtrunA17_Chr3g0089721 29.389 262 136 10 45 264 51 305 3.83e-22 95.1
Msa0431900 MtrunA17_Chr8g0371321 29.197 274 129 9 67 278 81 351 8.84e-21 91.3
Msa0431900 MtrunA17_Chr1g0207571 29.932 294 138 11 67 296 63 352 3.71e-20 89.7
Msa0431900 MtrunA17_Chr1g0185141 28.270 237 112 7 100 278 200 436 5.63e-20 90.5
Msa0431900 MtrunA17_Chr4g0022171 29.577 284 137 9 67 290 98 378 2.27e-19 87.8
Msa0431900 MtrunA17_Chr2g0294291 29.600 250 135 7 60 269 70 318 4.10e-19 86.7
Msa0431900 MtrunA17_Chr2g0324061 31.944 216 120 7 100 291 160 372 8.40e-19 86.3
Msa0431900 MtrunA17_Chr1g0211251 28.125 224 116 7 67 248 83 303 2.03e-18 84.7
Msa0431900 MtrunA17_Chr7g0249421 28.821 229 135 7 93 294 174 401 2.75e-18 84.7
Msa0431900 MtrunA17_Chr4g0063111 27.863 262 150 9 47 274 60 316 3.80e-18 84.3
Msa0431900 MtrunA17_Chr7g0238501 29.646 226 115 5 67 248 265 490 7.42e-18 83.6
Msa0431900 MtrunA17_Chr1g0175381 28.151 238 132 6 65 264 79 315 1.12e-17 82.4
Msa0431900 MtrunA17_Chr7g0250061 26.316 247 136 7 65 269 76 318 1.92e-17 81.6
Msa0431900 MtrunA17_Chr7g0221691 28.205 273 156 10 19 264 125 384 2.10e-16 79.0
Msa0431900 MtrunA17_Chr4g0068971 34.109 129 72 3 160 278 104 229 1.30e-15 75.1
Msa0431900 MtrunA17_Chr8g0342431 35.065 154 81 6 130 266 201 352 5.14e-15 74.7
Msa0431900 MtrunA17_Chr4g0039061 27.490 251 130 9 67 269 204 450 1.74e-14 73.6
Msa0431900 MtrunA17_Chr2g0295991 26.190 336 151 13 52 290 151 486 3.28e-14 72.8
Msa0431900 MtrunA17_Chr4g0067301 29.018 224 99 7 126 291 277 498 1.23e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0431900 AT4G31750.2 88.814 295 32 1 1 295 1 294 0.0 531
Msa0431900 AT4G31750.1 88.814 295 32 1 1 295 1 294 0.0 531
Msa0431900 AT4G31750.3 88.814 295 32 1 1 295 1 294 0.0 531
Msa0431900 AT5G24940.1 82.918 281 47 1 1 281 1 280 1.73e-175 493
Msa0431900 AT5G10740.1 81.495 281 51 1 1 281 1 280 6.99e-172 480
Msa0431900 AT5G10740.2 81.495 281 51 1 1 281 1 280 6.99e-172 480
Msa0431900 AT1G43900.1 63.878 263 89 2 23 280 107 368 6.44e-125 362
Msa0431900 AT5G53140.1 55.872 281 123 1 17 296 83 363 1.86e-115 339
Msa0431900 AT5G53140.2 55.872 281 123 1 17 296 83 363 1.86e-115 339
Msa0431900 AT1G78200.1 45.420 262 139 3 23 280 21 282 6.39e-71 221
Msa0431900 AT1G78200.3 45.420 262 139 3 23 280 21 282 6.39e-71 221
Msa0431900 AT1G78200.2 45.420 262 139 3 23 280 21 282 6.39e-71 221
Msa0431900 AT1G78200.5 46.414 237 124 2 47 280 1 237 1.35e-67 211
Msa0431900 AT1G78200.4 46.414 237 124 2 47 280 1 237 1.35e-67 211
Msa0431900 AT1G34750.2 44.275 262 139 5 23 280 23 281 3.29e-67 211
Msa0431900 AT1G34750.1 44.275 262 139 5 23 280 23 281 3.29e-67 211
Msa0431900 AT1G34750.3 44.275 262 139 5 23 280 23 281 3.29e-67 211
Msa0431900 AT2G20630.1 45.525 257 129 5 27 280 30 278 2.65e-66 209
Msa0431900 AT2G20630.2 44.318 264 136 5 27 287 30 285 7.05e-65 206
Msa0431900 AT4G28400.3 44.444 252 133 5 33 280 12 260 3.19e-64 203
Msa0431900 AT4G28400.1 44.151 265 140 6 21 280 21 282 4.19e-64 203
Msa0431900 AT1G22280.1 44.094 254 135 5 31 280 30 280 5.45e-63 201
Msa0431900 AT3G15260.2 45.627 263 135 6 23 280 29 288 6.73e-62 198
Msa0431900 AT3G15260.1 45.627 263 135 6 23 280 29 288 6.73e-62 198
Msa0431900 AT1G22280.3 43.462 260 134 6 31 280 30 286 3.77e-61 196
Msa0431900 AT2G34740.1 43.922 255 134 6 32 281 85 335 8.25e-59 191
Msa0431900 AT2G40180.1 40.613 261 136 7 35 280 129 385 1.81e-55 184
Msa0431900 AT1G07160.1 40.698 258 137 6 35 280 123 376 8.24e-55 182
Msa0431900 AT2G30020.1 41.569 255 134 5 35 278 140 390 1.94e-54 182
Msa0431900 AT1G34750.4 44.292 219 115 5 23 237 23 238 1.16e-51 170
Msa0431900 AT1G67820.2 42.918 233 119 5 16 244 72 294 1.16e-50 172
Msa0431900 AT1G67820.1 42.918 233 119 5 16 244 108 330 2.73e-50 172
Msa0431900 AT2G40860.4 38.889 270 144 7 33 287 293 556 2.02e-48 169
Msa0431900 AT2G40860.1 38.889 270 144 7 33 287 391 654 2.81e-48 171
Msa0431900 AT3G51470.2 39.847 261 140 7 33 280 27 283 3.40e-48 163
Msa0431900 AT3G51470.1 39.847 261 140 7 33 280 71 327 6.03e-48 164
Msa0431900 AT4G28400.2 42.342 222 120 6 21 237 21 239 4.82e-46 156
Msa0431900 AT5G57050.2 37.793 299 129 11 35 278 73 369 1.88e-45 158
Msa0431900 AT5G57050.1 37.793 299 129 11 35 278 113 409 2.73e-45 159
Msa0431900 AT3G62260.2 33.548 310 172 8 6 285 50 355 4.66e-45 157
Msa0431900 AT3G62260.1 35.766 274 142 8 42 285 85 354 1.52e-44 155
Msa0431900 AT4G26080.1 37.500 296 129 10 35 278 129 420 1.84e-44 157
Msa0431900 AT3G62260.3 36.059 269 138 8 47 285 1 265 3.91e-44 152
Msa0431900 AT2G33700.1 39.207 227 124 5 64 280 122 344 8.02e-44 154
Msa0431900 AT2G34740.3 41.395 215 117 6 32 241 81 291 3.03e-43 150
Msa0431900 AT2G34740.2 41.395 215 117 6 32 241 99 309 3.08e-43 150
Msa0431900 AT2G40860.2 37.600 250 136 6 33 267 391 635 1.22e-42 155
Msa0431900 AT5G59220.1 39.224 232 123 3 35 248 112 343 1.78e-42 151
Msa0431900 AT1G07430.1 39.662 237 118 6 35 248 121 355 1.80e-42 151
Msa0431900 AT2G25620.1 37.262 263 134 6 42 278 97 354 9.30e-42 149
Msa0431900 AT2G25620.2 37.262 263 134 6 42 278 97 354 9.30e-42 149
Msa0431900 AT2G29380.1 35.915 284 139 8 35 278 78 358 1.73e-40 144
Msa0431900 AT3G11410.1 37.815 238 123 4 36 248 106 343 8.32e-40 144
Msa0431900 AT5G51760.2 32.036 334 166 6 2 278 50 379 2.61e-39 142
Msa0431900 AT3G17250.1 35.537 242 128 6 63 280 156 393 2.66e-39 142
Msa0431900 AT1G17550.1 33.654 312 138 8 35 278 189 499 2.92e-39 144
Msa0431900 AT1G17550.2 33.654 312 138 8 35 278 189 499 2.92e-39 144
Msa0431900 AT5G51760.1 32.036 334 166 6 2 278 80 409 3.95e-39 142
Msa0431900 AT1G48040.1 37.398 246 114 6 64 280 115 349 2.92e-38 139
Msa0431900 AT1G72770.4 33.866 313 135 8 35 278 190 499 7.51e-38 140
Msa0431900 AT1G72770.1 33.866 313 135 8 35 278 190 499 7.51e-38 140
Msa0431900 AT1G72770.3 33.866 313 135 8 35 278 190 499 7.51e-38 140
Msa0431900 AT1G18030.1 33.333 273 150 10 38 280 78 348 6.72e-34 127
Msa0431900 AT2G25070.1 28.947 342 165 10 4 280 1 329 2.23e-32 123
Msa0431900 AT2G25070.2 28.947 342 165 10 4 280 1 329 2.23e-32 123
Msa0431900 AT4G31860.1 30.380 316 150 10 30 280 19 329 1.93e-31 120
Msa0431900 AT3G16800.2 34.599 237 122 6 61 264 89 325 3.79e-30 117
Msa0431900 AT3G16800.1 34.599 237 122 6 61 264 89 325 3.79e-30 117
Msa0431900 AT3G16800.3 34.599 237 122 6 61 264 89 325 3.79e-30 117
Msa0431900 AT2G40860.3 36.190 210 115 5 33 228 391 595 4.55e-30 119
Msa0431900 AT3G16800.4 34.783 230 117 6 68 264 1 230 1.16e-29 113
Msa0431900 AT3G16800.6 34.783 230 117 6 68 264 1 230 1.16e-29 113
Msa0431900 AT4G08260.1 33.937 221 108 5 64 278 18 206 1.38e-29 112
Msa0431900 AT4G31860.3 31.752 274 126 9 30 247 19 287 3.38e-29 113
Msa0431900 AT4G27800.1 28.990 307 162 9 19 277 47 345 1.44e-28 113
Msa0431900 AT1G18030.2 34.222 225 121 7 38 237 78 300 3.08e-28 110
Msa0431900 AT1G22280.2 40.909 154 86 4 31 182 30 180 4.11e-28 107
Msa0431900 AT1G68410.4 33.047 233 132 8 65 278 73 300 1.65e-27 111
Msa0431900 AT1G68410.3 33.047 233 132 8 65 278 73 300 1.65e-27 111
Msa0431900 AT1G68410.1 33.047 233 132 8 65 278 73 300 1.65e-27 111
Msa0431900 AT1G68410.2 33.047 233 132 8 65 278 73 300 1.65e-27 111
Msa0431900 AT4G32950.1 37.963 216 108 9 64 256 71 283 4.32e-27 108
Msa0431900 AT5G57050.3 38.191 199 92 9 35 204 113 309 5.68e-27 107
Msa0431900 AT5G27930.1 32.645 242 115 9 67 264 94 331 1.05e-26 108
Msa0431900 AT5G27930.2 32.645 242 115 9 67 264 94 331 1.05e-26 108
Msa0431900 AT3G05640.2 33.725 255 128 11 67 280 95 349 1.63e-26 107
Msa0431900 AT3G05640.1 33.725 255 128 11 67 280 95 349 1.63e-26 107
Msa0431900 AT3G05640.3 33.725 255 128 11 67 280 95 349 1.63e-26 107
Msa0431900 AT4G31860.2 32.061 262 117 9 30 235 19 275 2.02e-26 105
Msa0431900 AT4G27800.2 29.197 274 142 8 19 248 47 312 6.07e-26 105
Msa0431900 AT4G27800.3 29.197 274 142 8 19 248 47 312 7.85e-26 104
Msa0431900 AT5G59220.2 36.216 185 100 3 35 201 112 296 1.12e-25 103
Msa0431900 AT1G09160.2 30.894 246 142 9 54 278 57 295 1.29e-25 105
Msa0431900 AT1G09160.1 30.894 246 142 9 54 278 57 295 1.29e-25 105
Msa0431900 AT5G02760.1 30.451 266 135 9 26 247 32 291 2.23e-25 104
Msa0431900 AT1G47380.1 30.932 236 139 8 65 281 64 294 1.16e-24 103
Msa0431900 AT3G63320.1 27.273 319 134 8 62 283 66 383 3.54e-24 101
Msa0431900 AT5G19280.1 31.206 282 153 11 33 280 303 577 8.65e-24 101
Msa0431900 AT5G26010.1 35.681 213 105 8 65 247 73 283 1.69e-23 98.6
Msa0431900 AT2G20050.2 31.373 255 132 10 65 278 143 395 2.07e-23 100
Msa0431900 AT2G20050.1 31.373 255 132 10 65 278 143 395 2.41e-23 100
Msa0431900 AT3G06270.1 27.817 284 162 10 37 280 62 342 5.50e-23 97.4
Msa0431900 AT3G27140.1 31.513 238 105 4 47 278 1 186 9.77e-23 94.7
Msa0431900 AT3G23360.1 29.596 223 117 5 63 280 72 259 2.38e-22 94.0
Msa0431900 AT3G63340.12 30.081 246 112 8 100 286 207 451 4.09e-22 96.7
Msa0431900 AT3G63340.8 30.081 246 112 8 100 286 207 451 7.32e-22 96.3
Msa0431900 AT3G63340.11 30.081 246 112 8 100 286 207 451 7.79e-22 96.3
Msa0431900 AT3G63340.5 30.081 246 112 8 100 286 207 451 8.65e-22 95.9
Msa0431900 AT3G63340.1 30.081 246 112 8 100 286 207 451 8.65e-22 95.9
Msa0431900 AT3G63340.7 30.081 246 112 8 100 286 207 451 8.73e-22 95.9
Msa0431900 AT3G63340.6 30.081 246 112 8 100 286 207 451 9.32e-22 95.9
Msa0431900 AT3G63340.3 30.081 246 112 8 100 286 207 451 9.32e-22 95.9
Msa0431900 AT3G63340.10 30.081 246 112 8 100 286 207 451 9.32e-22 95.9
Msa0431900 AT3G63340.4 30.081 246 112 8 100 286 207 451 9.32e-22 95.9
Msa0431900 AT5G01700.1 32.707 266 125 11 67 284 31 290 1.02e-21 93.6
Msa0431900 AT3G17090.1 31.818 242 125 7 67 269 86 326 1.11e-21 94.4
Msa0431900 AT3G63320.2 29.630 243 111 7 100 283 59 300 1.91e-21 93.6
Msa0431900 AT5G01700.2 32.463 268 127 11 65 284 78 339 1.98e-21 93.6
Msa0431900 AT3G17090.2 32.273 220 110 6 67 247 86 305 3.61e-21 92.0
Msa0431900 AT3G51370.1 27.018 285 143 8 65 287 79 360 4.85e-21 92.4
Msa0431900 AT3G51370.3 27.018 285 143 8 65 287 79 360 4.85e-21 92.4
Msa0431900 AT4G32950.2 37.306 193 97 8 65 234 72 263 6.42e-21 90.5
Msa0431900 AT3G12620.2 28.912 294 143 10 60 291 78 367 1.11e-20 91.7
Msa0431900 AT3G12620.1 28.912 294 143 10 60 291 78 367 1.11e-20 91.7
Msa0431900 AT3G55050.1 29.710 276 129 10 65 278 84 356 2.33e-20 90.5
Msa0431900 AT3G55050.2 29.710 276 129 10 65 278 84 356 2.33e-20 90.5
Msa0431900 AT4G33920.1 29.758 289 135 12 67 290 63 348 2.77e-20 90.5
Msa0431900 AT1G79630.2 31.556 225 128 6 93 293 119 341 3.04e-20 90.5
Msa0431900 AT1G79630.7 31.556 225 128 6 93 293 119 341 3.04e-20 90.5
Msa0431900 AT1G79630.1 31.556 225 128 6 93 293 189 411 3.72e-20 90.9
Msa0431900 AT1G72770.2 33.023 215 93 6 35 201 190 401 3.72e-20 90.1
Msa0431900 AT1G72770.5 33.023 215 93 6 35 201 190 401 3.72e-20 90.1
Msa0431900 AT1G79630.8 31.556 225 128 6 93 293 185 407 4.40e-20 90.5
Msa0431900 AT1G79630.6 31.556 225 128 6 93 293 79 301 5.33e-20 89.7
Msa0431900 AT1G79630.3 31.556 225 128 6 93 293 79 301 5.33e-20 89.7
Msa0431900 AT1G79630.4 31.556 225 128 6 93 293 79 301 5.33e-20 89.7
Msa0431900 AT1G79630.5 31.556 225 128 6 93 293 79 301 5.33e-20 89.7
Msa0431900 AT5G66080.1 29.388 245 127 7 67 269 84 324 1.01e-19 88.6
Msa0431900 AT2G05050.1 28.151 238 114 5 47 278 1 187 1.74e-19 84.7
Msa0431900 AT5G06750.3 28.279 244 124 7 67 264 84 322 2.06e-19 87.8
Msa0431900 AT5G06750.1 28.279 244 124 7 67 264 84 322 2.06e-19 87.8
Msa0431900 AT1G03590.1 28.621 290 146 9 63 294 88 374 5.34e-19 87.0
Msa0431900 AT4G03415.1 31.535 241 110 9 61 247 93 332 2.41e-18 85.5
Msa0431900 AT4G03415.3 31.535 241 110 9 61 247 93 332 2.41e-18 85.5
Msa0431900 AT4G03415.2 31.535 241 110 9 61 247 93 332 2.41e-18 85.5
Msa0431900 AT4G38520.2 25.806 279 142 8 67 283 83 358 4.10e-18 84.3
Msa0431900 AT4G38520.1 25.806 279 142 8 67 283 83 358 4.10e-18 84.3
Msa0431900 AT5G36250.1 28.837 215 124 7 70 266 160 363 8.95e-18 83.6
Msa0431900 AT1G16220.1 29.717 212 126 5 93 282 166 376 1.23e-17 83.2
Msa0431900 AT3G02750.2 32.203 177 102 5 88 247 178 353 5.47e-17 81.3
Msa0431900 AT3G02750.1 32.203 177 102 5 88 247 178 353 5.47e-17 81.3
Msa0431900 AT3G63340.2 35.616 146 77 5 157 286 340 484 1.31e-15 77.8
Msa0431900 AT3G51370.2 27.907 215 103 5 125 287 61 275 3.43e-15 74.7
Msa0431900 AT3G16560.1 25.075 335 153 14 52 291 160 491 4.74e-13 69.7
Msa0431900 AT3G16560.4 25.075 335 153 14 52 291 160 491 4.74e-13 69.7
Msa0431900 AT3G16560.2 25.075 335 153 14 52 291 160 491 4.74e-13 69.7
Msa0431900 AT3G16560.3 26.280 293 139 13 52 270 160 449 5.54e-13 69.3
Msa0431900 AT5G36250.3 28.495 186 104 7 70 237 160 334 6.04e-12 65.9

Find 87 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTAGAGTTTCTTATTC+TGG 0.200352 3_2:-84023309 Msa0431900:CDS
TAGACATATACCTGGATTTC+TGG 0.210715 3_2:+84023714 None:intergenic
TTGTCGTCTTTGTTGTTCTT+AGG 0.213375 3_2:-84022657 Msa0431900:three_prime_UTR
GAAATATTGCAGTTGTAATA+TGG 0.223036 3_2:-84025895 Msa0431900:exon
TTCTGGCCAGTGACGGGCTT+TGG 0.240299 3_2:-84023292 Msa0431900:CDS
CGCAATATACACATGAATTA+TGG 0.279299 3_2:-84022615 Msa0431900:three_prime_UTR
TCTAACTGTGGCCGGCAAAT+TGG 0.294225 3_2:+84022938 None:intergenic
GAACATACCTATTGCTGATT+TGG 0.300676 3_2:+84024525 None:intergenic
TTGGTGTCAGAAATGAATTT+TGG 0.312849 3_2:+84024544 None:intergenic
TCTGGCCAGTGACGGGCTTT+GGG 0.337499 3_2:-84023291 Msa0431900:CDS
TCCTTTGCCTCTCATCAGTT+TGG 0.338012 3_2:+84023926 None:intergenic
CGGTCAGCGGTGGCGGTCTC+AGG 0.349611 3_2:-84025815 Msa0431900:intron
CTTGCTGTCTCTCGTGCATT+TGG 0.353349 3_2:-84023771 Msa0431900:CDS
TGCCTCTCATCAGTTTGGTC+TGG 0.356443 3_2:+84023931 None:intergenic
TGTCGTCTTTGTTGTTCTTA+GGG 0.371711 3_2:-84022656 Msa0431900:three_prime_UTR
AATTTGCCGGCCACAGTTAG+AGG 0.373882 3_2:-84022936 Msa0431900:exon
ATACAACAACTCTATTTAAC+AGG 0.378525 3_2:+84022779 None:intergenic
GCCTCCTCTGCATCTTCAAT+CGG 0.383558 3_2:+84023072 None:intergenic
ACCATCAACACCGTCAATTC+TGG 0.393237 3_2:+84025100 None:intergenic
TCCATTGAAGATCTCTTGCC+AGG 0.411700 3_2:+84025137 None:intergenic
CAAACGATCGCCAACTAGAA+TGG 0.427351 3_2:+84024343 None:intergenic
TTCTTATTCTGGCCAGTGAC+GGG 0.427831 3_2:-84023298 Msa0431900:CDS
TTGCAAATGTTGGAGACTCC+AGG 0.434546 3_2:-84024316 Msa0431900:CDS
TTGATGTGTGTAAGGAGATT+AGG 0.441645 3_2:-84022720 Msa0431900:three_prime_UTR
ATGCAGGAGGCTTTGTTATG+TGG 0.443560 3_2:-84023897 Msa0431900:CDS
CACAATGGAAAGTTTAGCTA+TGG 0.445062 3_2:-84025173 Msa0431900:CDS
AGTAGCTCCAACCAATTTGC+CGG 0.445567 3_2:-84022949 Msa0431900:CDS
GATGGACCGGTCAGCGGTGG+CGG 0.451633 3_2:-84025822 Msa0431900:CDS
CGTTTGCTTGTTGCAAATGT+TGG 0.452880 3_2:-84024326 Msa0431900:CDS
TCTGACACCAAATCAGCAAT+AGG 0.457163 3_2:-84024532 Msa0431900:intron
TATGGGTATGCTAGCTCGCC+TGG 0.469009 3_2:-84025155 Msa0431900:CDS
AAATATTGCAGTTGTAATAT+GGG 0.474583 3_2:-84025894 Msa0431900:exon
TGATTTCAGATATTCATTGT+CGG 0.476407 3_2:+84024409 None:intergenic
TTTACAGGAACTTGGAGAGT+TGG 0.480844 3_2:-84023801 Msa0431900:intron
CAGTTAGAGGGTTTGTGCAT+TGG 0.483398 3_2:-84022923 Msa0431900:exon
GACATCCCAAAGCCCGTCAC+TGG 0.487456 3_2:+84023286 None:intergenic
GGAGGCTTTGTTATGTGGGC+TGG 0.490873 3_2:-84023892 Msa0431900:intron
GTTATATGCAGAGGCGGTAA+TGG 0.491548 3_2:-84024290 Msa0431900:intron
TGCATCATACAAGAATATAC+AGG 0.503804 3_2:-84022826 Msa0431900:three_prime_UTR
ACAGGAACTTGGAGAGTTGG+AGG 0.510331 3_2:-84023798 Msa0431900:intron
ACCAGAATTGACGGTGTTGA+TGG 0.510608 3_2:-84025101 Msa0431900:CDS
GCCTCTGCATATAACGGCCC+TGG 0.511126 3_2:+84024298 None:intergenic
TTTCTTATTCTGGCCAGTGA+CGG 0.511376 3_2:-84023299 Msa0431900:CDS
ATATCCAAACATTTCAAAAG+TGG 0.517630 3_2:-84022889 Msa0431900:three_prime_UTR
GCCTGGCAAGAGATCTTCAA+TGG 0.518466 3_2:-84025138 Msa0431900:CDS
CACATACCTAATTTGTAGCT+AGG 0.525653 3_2:-84022750 Msa0431900:three_prime_UTR
TGTTGCTGATCCAGAAATCC+AGG 0.527506 3_2:-84023724 Msa0431900:intron
AGGCAAAGGATTGAAGATGC+AGG 0.531055 3_2:-84023913 Msa0431900:CDS
AACAACCATCACAAAGATGC+AGG 0.531101 3_2:-84024383 Msa0431900:CDS
TGCAGGAGGCTTTGTTATGT+GGG 0.535770 3_2:-84023896 Msa0431900:CDS
TACTATGAGAAGAAGTGCCT+TGG 0.536105 3_2:+84022968 None:intergenic
TTGGGATGTCGTCTCAAATG+AGG 0.536571 3_2:-84023273 Msa0431900:intron
CTGAGACCGCCACCGCTGAC+CGG 0.540884 3_2:+84025816 None:intergenic
GGGTTTGTGCATTGGTGAAG+AGG 0.543482 3_2:-84022915 Msa0431900:three_prime_UTR
GCATCTACCGCCATTCTAGT+TGG 0.543601 3_2:-84024353 Msa0431900:CDS
TACCATCAAAGACTCCGAAA+AGG 0.557789 3_2:+84025066 None:intergenic
CAGGTCCGTGCTATAGATGA+TGG 0.565112 3_2:-84025840 Msa0431900:CDS
ACTGTGGCCGGCAAATTGGT+TGG 0.565632 3_2:+84022942 None:intergenic
TAGATCCTGCATCTTTGTGA+TGG 0.566925 3_2:+84024378 None:intergenic
CATCATCTATAGCACGGACC+TGG 0.569833 3_2:+84025841 None:intergenic
ACCAAACTGATGAGAGGCAA+AGG 0.577056 3_2:-84023927 Msa0431900:CDS
ATTACCGCCTCTGCATATAA+CGG 0.580883 3_2:+84024292 None:intergenic
CCGTGCTATAGATGATGGAC+CGG 0.584948 3_2:-84025835 Msa0431900:CDS
ACAAACCCTCTAACTGTGGC+CGG 0.590068 3_2:+84022930 None:intergenic
ATTTGCCGGCCACAGTTAGA+GGG 0.591441 3_2:-84022935 Msa0431900:exon
AGCACGGACCTGGCTTGTTG+AGG 0.592387 3_2:+84025851 None:intergenic
ACAATGGAAAGTTTAGCTAT+GGG 0.597313 3_2:-84025172 Msa0431900:CDS
TGCAAATGTTGGAGACTCCA+GGG 0.600937 3_2:-84024315 Msa0431900:CDS
GTTCGTTTCTTGATGAACCA+AGG 0.602297 3_2:-84022985 Msa0431900:CDS
TATGATGCACAACTACAAGA+TGG 0.608507 3_2:+84022840 None:intergenic
TTTGTGCATTGGTGAAGAGG+TGG 0.609528 3_2:-84022912 Msa0431900:three_prime_UTR
ACCGATTGAAGATGCAGAGG+AGG 0.613212 3_2:-84023073 Msa0431900:CDS
TCCAGGGCCGTTATATGCAG+AGG 0.616040 3_2:-84024299 Msa0431900:CDS
GATGATGGACCGGTCAGCGG+TGG 0.621402 3_2:-84025825 Msa0431900:CDS
ATGCACAAACCCTCTAACTG+TGG 0.622547 3_2:+84022926 None:intergenic
GGTGTTGATGGTGAAATCGT+TGG 0.626787 3_2:-84025089 Msa0431900:CDS
ACTACTGCTGCATCTAAACA+TGG 0.630145 3_2:-84022684 Msa0431900:three_prime_UTR
ATAGATGATGGACCGGTCAG+CGG 0.638923 3_2:-84025828 Msa0431900:CDS
AGCCAGACCAAACTGATGAG+AGG 0.656558 3_2:-84023933 Msa0431900:CDS
CCGGTCCATCATCTATAGCA+CGG 0.659296 3_2:+84025835 None:intergenic
TAAACCGATTGAAGATGCAG+AGG 0.660296 3_2:-84023076 Msa0431900:CDS
ATTTGTACATGTAGTCACAA+TGG 0.664058 3_2:-84025188 Msa0431900:intron
TAAGAACAACAAAGACGACA+AGG 0.668701 3_2:+84022659 None:intergenic
CAAAGGATTGAAGATGCAGG+AGG 0.695208 3_2:-84023910 Msa0431900:CDS
AGGGCCGTTATATGCAGAGG+CGG 0.697345 3_2:-84024296 Msa0431900:CDS
ACGATCGCCAACTAGAATGG+CGG 0.716614 3_2:+84024346 None:intergenic
ATGCAAGAAGCATATCAGAG+AGG 0.726307 3_2:-84023036 Msa0431900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATAAATATTATTTTTAC+AGG - chr3_2:84024749-84024768 Msa0431900:intron 10.0%
!!! TAAATTTTATACATAAGTTG+TGG - chr3_2:84023246-84023265 Msa0431900:intron 15.0%
!!! AAATTTTATACATAAGTTGT+GGG - chr3_2:84023247-84023266 Msa0431900:intron 15.0%
!! AATATGAAATAATTCTTACA+CGG + chr3_2:84023897-84023916 None:intergenic 15.0%
!! TTATAGACAAGTTTATATAT+AGG + chr3_2:84023927-84023946 None:intergenic 15.0%
!! AACTTAATTATTTCGAATTT+AGG + chr3_2:84025359-84025378 None:intergenic 15.0%
!! AAATATTGCAGTTGTAATAT+GGG - chr3_2:84022671-84022690 Msa0431900:three_prime_UTR 20.0%
!! ACTAAACAATTATTCCTATA+TGG + chr3_2:84023843-84023862 None:intergenic 20.0%
!! GTGTAAGAATTATTTCATAT+TGG - chr3_2:84023896-84023915 Msa0431900:CDS 20.0%
!!! ATATTATTTTTACAGGAACT+TGG - chr3_2:84024756-84024775 Msa0431900:intron 20.0%
!! ACAAGGTTAATTATAGAATA+AGG + chr3_2:84025030-84025049 None:intergenic 20.0%
!!! CTTCTAGTTAAAAACTAATT+TGG - chr3_2:84025070-84025089 Msa0431900:CDS 20.0%
!! TTAATTATTTCGAATTTAGG+TGG + chr3_2:84025356-84025375 None:intergenic 20.0%
!!! TAACATTTTAAGCATTTTTC+AGG - chr3_2:84025450-84025469 Msa0431900:intron 20.0%
! GAAATATTGCAGTTGTAATA+TGG - chr3_2:84022670-84022689 Msa0431900:three_prime_UTR 25.0%
!! ATATGCAAATCAACACATTT+TGG + chr3_2:84022800-84022819 None:intergenic 25.0%
! ATAATATCTTGAATGCATGT+TGG + chr3_2:84022847-84022866 None:intergenic 25.0%
!!! ATTCAAGAGAAAGTTGTTTT+GGG + chr3_2:84023038-84023057 None:intergenic 25.0%
!! TATTCAAGAGAAAGTTGTTT+TGG + chr3_2:84023039-84023058 None:intergenic 25.0%
!! CAATTTTCTCCTTAGATTAT+AGG - chr3_2:84023092-84023111 Msa0431900:CDS 25.0%
!! CGTTAACGTATTCAATTTTT+CGG + chr3_2:84023124-84023143 None:intergenic 25.0%
! CGAAAAATTGAATACGTTAA+CGG - chr3_2:84023122-84023141 Msa0431900:intron 25.0%
!! AAAAAACTAGTCTGTGTTAT+AGG - chr3_2:84023179-84023198 Msa0431900:intron 25.0%
!!! TTGGATTCATTCATTGATTT+GGG - chr3_2:84023294-84023313 Msa0431900:CDS 25.0%
!!! TTTCTCTAATTTTTTTCTCC+TGG - chr3_2:84023534-84023553 Msa0431900:intron 25.0%
!! TGTAAGCAATGGAAAATTTT+TGG + chr3_2:84023651-84023670 None:intergenic 25.0%
! TTTCCATTGCTTACAATATT+CGG - chr3_2:84023656-84023675 Msa0431900:intron 25.0%
! GTTCAAAAATAACAACAAAG+AGG + chr3_2:84023809-84023828 None:intergenic 25.0%
! TTATTCCTATATGGAATAAC+TGG + chr3_2:84023834-84023853 None:intergenic 25.0%
!! AACTTGTCTATAACTCTTTT+AGG - chr3_2:84023934-84023953 Msa0431900:CDS 25.0%
! GAAAAGCAAGAGTTATTATA+TGG + chr3_2:84024113-84024132 None:intergenic 25.0%
! TGATTTCAGATATTCATTGT+CGG + chr3_2:84024159-84024178 None:intergenic 25.0%
! AAGTTATCTTCGTAGATTTA+TGG - chr3_2:84024961-84024980 Msa0431900:intron 25.0%
! ATTTATGGAATATGTGGATA+AGG - chr3_2:84024976-84024995 Msa0431900:intron 25.0%
! TAAGGATAAATGACAAACAT+TGG + chr3_2:84025012-84025031 None:intergenic 25.0%
! TTACAATTGTTACTAGTTCA+TGG + chr3_2:84025110-84025129 None:intergenic 25.0%
! TCATGTATGATCTTTATTCT+GGG - chr3_2:84025145-84025164 Msa0431900:CDS 25.0%
! GCTTAAAATGTTAAACAAGT+TGG + chr3_2:84025443-84025462 None:intergenic 25.0%
! ATATCCAAACATTTCAAAAG+TGG - chr3_2:84025676-84025695 Msa0431900:intron 25.0%
!!! TTTTCCACTTTTGAAATGTT+TGG + chr3_2:84025683-84025702 None:intergenic 25.0%
! ATACAACAACTCTATTTAAC+AGG + chr3_2:84025789-84025808 None:intergenic 25.0%
!! ATTTTTCCTAGCTACAAATT+AGG + chr3_2:84025824-84025843 None:intergenic 25.0%
! GAAAAATATTGATGTGTGTA+AGG - chr3_2:84025837-84025856 Msa0431900:CDS 25.0%
! GTGCTTTTCTTTCATCATTT+TGG - chr3_2:84022636-84022655 Msa0431900:three_prime_UTR 30.0%
AAGTAGTTGTACACAAAAGA+TGG - chr3_2:84022963-84022982 Msa0431900:CDS 30.0%
! TACTTTTAGACATCATTGCT+TGG - chr3_2:84023275-84023294 Msa0431900:CDS 30.0%
! CTTGGATTCATTCATTGATT+TGG - chr3_2:84023293-84023312 Msa0431900:CDS 30.0%
!! TGGATTCATTCATTGATTTG+GGG - chr3_2:84023295-84023314 Msa0431900:CDS 30.0%
ATTTGTACATGTAGTCACAA+TGG - chr3_2:84023377-84023396 Msa0431900:intron 30.0%
ACAATGGAAAGTTTAGCTAT+GGG - chr3_2:84023393-84023412 Msa0431900:intron 30.0%
! TTTTATGAGACCAGAATTGA+CGG - chr3_2:84023455-84023474 Msa0431900:intron 30.0%
! ATTCCCTTGTGAAAGATTTT+CGG + chr3_2:84023583-84023602 None:intergenic 30.0%
TTTCCGAATATTGTAAGCAA+TGG + chr3_2:84023662-84023681 None:intergenic 30.0%
CCTTCAAAAAAATTCTTTCG+CGG + chr3_2:84023731-84023750 None:intergenic 30.0%
CCAACAAAAGGTTTGTAAAT+TGG + chr3_2:84023758-84023777 None:intergenic 30.0%
! CCAATTTACAAACCTTTTGT+TGG - chr3_2:84023755-84023774 Msa0431900:CDS 30.0%
CAAAAATAACAACAAAGAGG+AGG + chr3_2:84023806-84023825 None:intergenic 30.0%
!! TCTATAACTCTTTTAGGTCA+TGG - chr3_2:84023940-84023959 Msa0431900:CDS 30.0%
!! TGGTGTCAGAAATGAATTTT+GGG + chr3_2:84024023-84024042 None:intergenic 30.0%
!!! TTGGTGTCAGAAATGAATTT+TGG + chr3_2:84024024-84024043 None:intergenic 30.0%
CATTCTACTTCTACATAAGA+AGG + chr3_2:84024549-84024568 None:intergenic 30.0%
TCGTAGATTTATGGAATATG+TGG - chr3_2:84024970-84024989 Msa0431900:intron 30.0%
CTCAAAAATGCTATTGTACA+AGG + chr3_2:84025047-84025066 None:intergenic 30.0%
GTCATGTATGATCTTTATTC+TGG - chr3_2:84025144-84025163 Msa0431900:CDS 30.0%
!! TTCTCTAGAGTTTCTTATTC+TGG - chr3_2:84025256-84025275 Msa0431900:intron 30.0%
TATTTCGAATTTAGGTGGTT+AGG + chr3_2:84025351-84025370 None:intergenic 30.0%
TGCATCATACAAGAATATAC+AGG - chr3_2:84025739-84025758 Msa0431900:intron 30.0%
ATGCATGTTGGCAAATGATA+CGG + chr3_2:84022835-84022854 None:intergenic 35.0%
!! GGATTCATTCATTGATTTGG+GGG - chr3_2:84023296-84023315 Msa0431900:CDS 35.0%
CACAATGGAAAGTTTAGCTA+TGG - chr3_2:84023392-84023411 Msa0431900:intron 35.0%
TTTCCAATCAAAATTCGACC+AGG + chr3_2:84023555-84023574 None:intergenic 35.0%
TATGCCGAAAATCTTTCACA+AGG - chr3_2:84023576-84023595 Msa0431900:intron 35.0%
ATGCCGAAAATCTTTCACAA+GGG - chr3_2:84023577-84023596 Msa0431900:intron 35.0%
TCAAAAAAATTCTTTCGCGG+TGG + chr3_2:84023728-84023747 None:intergenic 35.0%
!!! CCGCGAAAGAATTTTTTTGA+AGG - chr3_2:84023728-84023747 Msa0431900:CDS 35.0%
TCTTGTCTTTAGCCAACAAA+AGG + chr3_2:84023770-84023789 None:intergenic 35.0%
AACCTCCAGTTATTCCATAT+AGG - chr3_2:84023826-84023845 Msa0431900:intron 35.0%
TTCCTATATGGAATAACTGG+AGG + chr3_2:84023831-84023850 None:intergenic 35.0%
! TCTTACACGGTTTATTTCTC+AGG + chr3_2:84023884-84023903 None:intergenic 35.0%
!! ATAACTCTTTTAGGTCATGG+CGG - chr3_2:84023943-84023962 Msa0431900:CDS 35.0%
! GAACATACCTATTGCTGATT+TGG + chr3_2:84024043-84024062 None:intergenic 35.0%
ATGATTATATGCATCAGCTG+TGG + chr3_2:84024135-84024154 None:intergenic 35.0%
TGTTAGTGCACGAGTAAAAA+TGG - chr3_2:84024451-84024470 Msa0431900:intron 35.0%
TAGACATATACCTGGATTTC+TGG + chr3_2:84024854-84024873 None:intergenic 35.0%
ATCCAGGTATATGTCTACTA+TGG - chr3_2:84024857-84024876 Msa0431900:intron 35.0%
AACCATAGTAGACATATACC+TGG + chr3_2:84024862-84024881 None:intergenic 35.0%
CCACATGAAATAGTCAAGAA+TGG + chr3_2:84024893-84024912 None:intergenic 35.0%
CCATTCTTGACTATTTCATG+TGG - chr3_2:84024890-84024909 Msa0431900:intron 35.0%
ACAAACAGACTCATGTACAA+AGG + chr3_2:84024938-84024957 None:intergenic 35.0%
GTTACTAGTTCATGGCAAAT+TGG + chr3_2:84025102-84025121 None:intergenic 35.0%
! TTGCATGATTGTGATTTTGC+AGG - chr3_2:84025217-84025236 Msa0431900:intron 35.0%
TTAAGTTCCTCTAGTAGAGT+TGG - chr3_2:84025372-84025391 Msa0431900:intron 35.0%
TATGATGCACAACTACAAGA+TGG + chr3_2:84025728-84025747 None:intergenic 35.0%
! CACATACCTAATTTGTAGCT+AGG - chr3_2:84025815-84025834 Msa0431900:intron 35.0%
TTGATGTGTGTAAGGAGATT+AGG - chr3_2:84025845-84025864 Msa0431900:CDS 35.0%
TAAGAACAACAAAGACGACA+AGG + chr3_2:84025909-84025928 None:intergenic 35.0%
!! TTGTCGTCTTTGTTGTTCTT+AGG - chr3_2:84025908-84025927 Msa0431900:five_prime_UTR 35.0%
!! TGTCGTCTTTGTTGTTCTTA+GGG - chr3_2:84025909-84025928 Msa0431900:five_prime_UTR 35.0%
CGGACACAACCTATAATCTA+AGG + chr3_2:84023104-84023123 None:intergenic 40.0%
CTAGTCTGTGTTATAGGTTG+AGG - chr3_2:84023185-84023204 Msa0431900:intron 40.0%
!! TCATTGATTTGGGGGAAAAG+AGG - chr3_2:84023304-84023323 Msa0431900:CDS 40.0%
!! CATTGATTTGGGGGAAAAGA+GGG - chr3_2:84023305-84023324 Msa0431900:CDS 40.0%
TACCATCAAAGACTCCGAAA+AGG + chr3_2:84023502-84023521 None:intergenic 40.0%
!! TCTCCTGGTCGAATTTTGAT+TGG - chr3_2:84023549-84023568 Msa0431900:intron 40.0%
TTCACAAGGGAATCATGTCA+TGG - chr3_2:84023590-84023609 Msa0431900:intron 40.0%
TCTGACACCAAATCAGCAAT+AGG - chr3_2:84024033-84024052 Msa0431900:intron 40.0%
AACAACCATCACAAAGATGC+AGG - chr3_2:84024182-84024201 Msa0431900:intron 40.0%
TAGATCCTGCATCTTTGTGA+TGG + chr3_2:84024190-84024209 None:intergenic 40.0%
! CGTTTGCTTGTTGCAAATGT+TGG - chr3_2:84024239-84024258 Msa0431900:intron 40.0%
ATTACCGCCTCTGCATATAA+CGG + chr3_2:84024276-84024295 None:intergenic 40.0%
! TACAAGAAAGCACGATTGGA+AGG + chr3_2:84024587-84024606 None:intergenic 40.0%
! TTGCTACAAGAAAGCACGAT+TGG + chr3_2:84024591-84024610 None:intergenic 40.0%
TTTACAGGAACTTGGAGAGT+TGG - chr3_2:84024764-84024783 Msa0431900:intron 40.0%
TTTCTTATTCTGGCCAGTGA+CGG - chr3_2:84025266-84025285 Msa0431900:intron 40.0%
TTAGGTGGTTAGGATGTGAA+AGG + chr3_2:84025341-84025360 None:intergenic 40.0%
AGACTATCCAACTCTACTAG+AGG + chr3_2:84025382-84025401 None:intergenic 40.0%
!!! AGCATTTTTCAGGAAGCTGT+TGG - chr3_2:84025460-84025479 Msa0431900:intron 40.0%
TAAACCGATTGAAGATGCAG+AGG - chr3_2:84025489-84025508 Msa0431900:intron 40.0%
! ATGCAAGAAGCATATCAGAG+AGG - chr3_2:84025529-84025548 Msa0431900:intron 40.0%
GTTCGTTTCTTGATGAACCA+AGG - chr3_2:84025580-84025599 Msa0431900:intron 40.0%
!! TACTATGAGAAGAAGTGCCT+TGG + chr3_2:84025600-84025619 None:intergenic 40.0%
ACTACTGCTGCATCTAAACA+TGG - chr3_2:84025881-84025900 Msa0431900:exon 40.0%
!! AGTTTTGTCCTCAACAAGCC+AGG - chr3_2:84022706-84022725 Msa0431900:three_prime_UTR 45.0%
TCCATTGAAGATCTCTTGCC+AGG + chr3_2:84023431-84023450 None:intergenic 45.0%
! ACCAGAATTGACGGTGTTGA+TGG - chr3_2:84023464-84023483 Msa0431900:intron 45.0%
ACCATCAACACCGTCAATTC+TGG + chr3_2:84023468-84023487 None:intergenic 45.0%
!! GGTGTTGATGGTGAAATCGT+TGG - chr3_2:84023476-84023495 Msa0431900:intron 45.0%
!!! GGTGAAATCGTTGGCCTTTT+CGG - chr3_2:84023485-84023504 Msa0431900:intron 45.0%
CAAACGATCGCCAACTAGAA+TGG + chr3_2:84024225-84024244 None:intergenic 45.0%
TTGCAAATGTTGGAGACTCC+AGG - chr3_2:84024249-84024268 Msa0431900:intron 45.0%
TGCAAATGTTGGAGACTCCA+GGG - chr3_2:84024250-84024269 Msa0431900:intron 45.0%
GTTATATGCAGAGGCGGTAA+TGG - chr3_2:84024275-84024294 Msa0431900:intron 45.0%
AGTGCACGAGTAAAAATGGC+AGG - chr3_2:84024455-84024474 Msa0431900:intron 45.0%
GTGCACGAGTAAAAATGGCA+GGG - chr3_2:84024456-84024475 Msa0431900:intron 45.0%
ACCAAACTGATGAGAGGCAA+AGG - chr3_2:84024638-84024657 Msa0431900:intron 45.0%
TCCTTTGCCTCTCATCAGTT+TGG + chr3_2:84024642-84024661 None:intergenic 45.0%
AGGCAAAGGATTGAAGATGC+AGG - chr3_2:84024652-84024671 Msa0431900:intron 45.0%
CAAAGGATTGAAGATGCAGG+AGG - chr3_2:84024655-84024674 Msa0431900:intron 45.0%
!! ATGCAGGAGGCTTTGTTATG+TGG - chr3_2:84024668-84024687 Msa0431900:intron 45.0%
!! TGCAGGAGGCTTTGTTATGT+GGG - chr3_2:84024669-84024688 Msa0431900:intron 45.0%
!! CTTTGTTATGTGGGCTGGTA+AGG - chr3_2:84024678-84024697 Msa0431900:intron 45.0%
TGTTGCTGATCCAGAAATCC+AGG - chr3_2:84024841-84024860 Msa0431900:intron 45.0%
CAGACTCATGTACAAAGGAC+AGG + chr3_2:84024933-84024952 None:intergenic 45.0%
TTCTTATTCTGGCCAGTGAC+GGG - chr3_2:84025267-84025286 Msa0431900:intron 45.0%
TTGGGATGTCGTCTCAAATG+AGG - chr3_2:84025292-84025311 Msa0431900:intron 45.0%
AGTAGCTCCAACCAATTTGC+CGG - chr3_2:84025616-84025635 Msa0431900:intron 45.0%
ATGCACAAACCCTCTAACTG+TGG + chr3_2:84025642-84025661 None:intergenic 45.0%
CAGTTAGAGGGTTTGTGCAT+TGG - chr3_2:84025642-84025661 Msa0431900:intron 45.0%
! TTTGTGCATTGGTGAAGAGG+TGG - chr3_2:84025653-84025672 Msa0431900:intron 45.0%
CATCATCTATAGCACGGACC+TGG + chr3_2:84022727-84022746 None:intergenic 50.0%
CAGGTCCGTGCTATAGATGA+TGG - chr3_2:84022725-84022744 Msa0431900:three_prime_UTR 50.0%
CCGGTCCATCATCTATAGCA+CGG + chr3_2:84022733-84022752 None:intergenic 50.0%
!! CCGTGCTATAGATGATGGAC+CGG - chr3_2:84022730-84022749 Msa0431900:three_prime_UTR 50.0%
!! ATAGATGATGGACCGGTCAG+CGG - chr3_2:84022737-84022756 Msa0431900:three_prime_UTR 50.0%
GCCTGGCAAGAGATCTTCAA+TGG - chr3_2:84023427-84023446 Msa0431900:intron 50.0%
! GGCCTTTTCGGAGTCTTTGA+TGG - chr3_2:84023497-84023516 Msa0431900:intron 50.0%
CATAAAGACCATGCAGCGAC+AGG + chr3_2:84024072-84024091 None:intergenic 50.0%
GCATCTACCGCCATTCTAGT+TGG - chr3_2:84024212-84024231 Msa0431900:intron 50.0%
ACGATCGCCAACTAGAATGG+CGG + chr3_2:84024222-84024241 None:intergenic 50.0%
AGCCAGACCAAACTGATGAG+AGG - chr3_2:84024632-84024651 Msa0431900:intron 50.0%
TGCCTCTCATCAGTTTGGTC+TGG + chr3_2:84024637-84024656 None:intergenic 50.0%
ACAGGAACTTGGAGAGTTGG+AGG - chr3_2:84024767-84024786 Msa0431900:intron 50.0%
! CTTGCTGTCTCTCGTGCATT+TGG - chr3_2:84024794-84024813 Msa0431900:intron 50.0%
ACCGATTGAAGATGCAGAGG+AGG - chr3_2:84025492-84025511 Msa0431900:intron 50.0%
GCCTCCTCTGCATCTTCAAT+CGG + chr3_2:84025496-84025515 None:intergenic 50.0%
TCTAACTGTGGCCGGCAAAT+TGG + chr3_2:84025630-84025649 None:intergenic 50.0%
AATTTGCCGGCCACAGTTAG+AGG - chr3_2:84025629-84025648 Msa0431900:intron 50.0%
ATTTGCCGGCCACAGTTAGA+GGG - chr3_2:84025630-84025649 Msa0431900:intron 50.0%
ACAAACCCTCTAACTGTGGC+CGG + chr3_2:84025638-84025657 None:intergenic 50.0%
! GGGTTTGTGCATTGGTGAAG+AGG - chr3_2:84025650-84025669 Msa0431900:intron 50.0%
TATGGGTATGCTAGCTCGCC+TGG - chr3_2:84023410-84023429 Msa0431900:intron 55.0%
AAAGACCATGCAGCGACAGG+TGG + chr3_2:84024069-84024088 None:intergenic 55.0%
TCCAGGGCCGTTATATGCAG+AGG - chr3_2:84024266-84024285 Msa0431900:intron 55.0%
AGGGCCGTTATATGCAGAGG+CGG - chr3_2:84024269-84024288 Msa0431900:intron 55.0%
!! GGAGGCTTTGTTATGTGGGC+TGG - chr3_2:84024673-84024692 Msa0431900:intron 55.0%
ACTGTGGCCGGCAAATTGGT+TGG + chr3_2:84025626-84025645 None:intergenic 55.0%
!! AGCACGGACCTGGCTTGTTG+AGG + chr3_2:84022717-84022736 None:intergenic 60.0%
TTTCGCGGTGGCAGAGAACG+AGG + chr3_2:84023716-84023735 None:intergenic 60.0%
TCTCTCCACCTGTCGCTGCA+TGG - chr3_2:84024061-84024080 Msa0431900:intron 60.0%
GCCTCTGCATATAACGGCCC+TGG + chr3_2:84024270-84024289 None:intergenic 60.0%
!! TTCTGGCCAGTGACGGGCTT+TGG - chr3_2:84025273-84025292 Msa0431900:intron 60.0%
!! TCTGGCCAGTGACGGGCTTT+GGG - chr3_2:84025274-84025293 Msa0431900:intron 60.0%
GACATCCCAAAGCCCGTCAC+TGG + chr3_2:84025282-84025301 None:intergenic 60.0%
!! GATGATGGACCGGTCAGCGG+TGG - chr3_2:84022740-84022759 Msa0431900:three_prime_UTR 65.0%
GATGGACCGGTCAGCGGTGG+CGG - chr3_2:84022743-84022762 Msa0431900:three_prime_UTR 70.0%
CTGAGACCGCCACCGCTGAC+CGG + chr3_2:84022752-84022771 None:intergenic 70.0%
! CGGTCAGCGGTGGCGGTCTC+AGG - chr3_2:84022750-84022769 Msa0431900:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 84022615 84025972 84022615 ID=Msa0431900;Name=Msa0431900
chr3_2 mRNA 84022615 84025972 84022615 ID=Msa0431900-mRNA-1;Parent=Msa0431900;Name=Msa0431900-mRNA-1;_AED=0.06;_eAED=0.06;_QI=74|1|1|1|1|1|8|324|299
chr3_2 exon 84022615 84023115 84022615 ID=Msa0431900-mRNA-1:exon:23649;Parent=Msa0431900-mRNA-1
chr3_2 exon 84023274 84023348 84023274 ID=Msa0431900-mRNA-1:exon:23648;Parent=Msa0431900-mRNA-1
chr3_2 exon 84023725 84023816 84023725 ID=Msa0431900-mRNA-1:exon:23647;Parent=Msa0431900-mRNA-1
chr3_2 exon 84023893 84023979 84023893 ID=Msa0431900-mRNA-1:exon:23646;Parent=Msa0431900-mRNA-1
chr3_2 exon 84024291 84024449 84024291 ID=Msa0431900-mRNA-1:exon:23645;Parent=Msa0431900-mRNA-1
chr3_2 exon 84024533 84024631 84024533 ID=Msa0431900-mRNA-1:exon:23644;Parent=Msa0431900-mRNA-1
chr3_2 exon 84025069 84025196 84025069 ID=Msa0431900-mRNA-1:exon:23643;Parent=Msa0431900-mRNA-1
chr3_2 exon 84025816 84025972 84025816 ID=Msa0431900-mRNA-1:exon:23642;Parent=Msa0431900-mRNA-1
chr3_2 five_prime_UTR 84025899 84025972 84025899 ID=Msa0431900-mRNA-1:five_prime_utr;Parent=Msa0431900-mRNA-1
chr3_2 CDS 84025816 84025898 84025816 ID=Msa0431900-mRNA-1:cds;Parent=Msa0431900-mRNA-1
chr3_2 CDS 84025069 84025196 84025069 ID=Msa0431900-mRNA-1:cds;Parent=Msa0431900-mRNA-1
chr3_2 CDS 84024533 84024631 84024533 ID=Msa0431900-mRNA-1:cds;Parent=Msa0431900-mRNA-1
chr3_2 CDS 84024291 84024449 84024291 ID=Msa0431900-mRNA-1:cds;Parent=Msa0431900-mRNA-1
chr3_2 CDS 84023893 84023979 84023893 ID=Msa0431900-mRNA-1:cds;Parent=Msa0431900-mRNA-1
chr3_2 CDS 84023725 84023816 84023725 ID=Msa0431900-mRNA-1:cds;Parent=Msa0431900-mRNA-1
chr3_2 CDS 84023274 84023348 84023274 ID=Msa0431900-mRNA-1:cds;Parent=Msa0431900-mRNA-1
chr3_2 CDS 84022939 84023115 84022939 ID=Msa0431900-mRNA-1:cds;Parent=Msa0431900-mRNA-1
chr3_2 three_prime_UTR 84022615 84022938 84022615 ID=Msa0431900-mRNA-1:three_prime_utr;Parent=Msa0431900-mRNA-1
Gene Sequence

>Msa0431900

ATGGGATATCTCAATTCAGTTTTGTCCTCAACAAGCCAGGTCCGTGCTATAGATGATGGACCGGTCAGCGGTGGCGGTCTCAGTCACAATGGAAAGTTTAGCTATGGGTATGCTAGCTCGCCTGGCAAGAGATCTTCAATGGAAGATTTTTATGAGACCAGAATTGACGGTGTTGATGGTGAAATCGTTGGCCTTTTCGGAGTCTTTGATGGTCATGGCGGTGTTCGTGCAGCTGAGTATGTTAAGCAAAACTTGTTTAGCAATTTGATCAGTCACCCAAAATTCATTTCTGACACCAAATCAGCAATAGCTGATGCATATAATCATACCGACAATGAATATCTGAAATCAGAAAACAACCATCACAAAGATGCAGGATCTACTGCATCTACCGCCATTCTAGTTGGCGATCGTTTGCTTGTTGCAAATGTTGGAGACTCCAGGGCCGTTATATGCAGAGGCGGTAATGCAATTGCTGTTTCTCGAGATCATAAGCCAGACCAAACTGATGAGAGGCAAAGGATTGAAGATGCAGGAGGCTTTGTTATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTCTCTCGTGCATTTGGTGATAGACTCTTGAAGCAGTATGTTGTTGCTGATCCAGAAATCCAGGAAGAAAAAGTTGATAGTTCTCTAGAGTTTCTTATTCTGGCCAGTGACGGGCTTTGGGATGTCGTCTCAAATGAGGAAGCTGTTGGTATGATTAAACCGATTGAAGATGCAGAGGAGGCAGCAAAGAGACTGATGCAAGAAGCATATCAGAGAGGTAGTGCTGACAATATCACTTGTGTCGTTGTTCGTTTCTTGATGAACCAAGGCACTTCTTCTCATAGTAGCTCCAACCAATTTGCCGGCCACAGTTAG
Protein sequence

>Msa0431900

MGYLNSVLSSTSQVRAIDDGPVSGGGLSHNGKFSYGYASSPGKRSSMEDFYETRIDGVDGEIVGLFGVFDGHGGVRAAEYVKQNLFSNLISHPKFISDTKSAIADAYNHTDNEYLKSENNHHKDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDSSLEFLILASDGLWDVVSNEEAVGMIKPIEDAEEAAKRLMQEAYQRGSADNITCVVVRFLMNQGTSSHSSSNQFAGHS*