AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1079590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1079590 MtrunA17_Chr7g0264841 97.697 304 7 0 1 304 1 304 0.0 608
Msa1079590 MtrunA17_Chr8g0391991 70.492 183 52 1 121 303 1 181 1.19e-89 265
Msa1079590 MtrunA17_Chr6g0471571 72.535 142 37 1 121 262 1 140 4.77e-67 207
Msa1079590 MtrunA17_Chr5g0439711 71.681 113 30 2 192 303 46 157 2.49e-47 156
Msa1079590 MtrunA17_Chr7g0238661 66.019 103 35 0 43 145 1 103 1.04e-42 142
Msa1079590 MtrunA17_Chr3g0093841 25.987 304 184 7 38 303 517 817 2.59e-20 91.3
Msa1079590 MtrunA17_Chr3g0093841 31.148 122 83 1 36 157 189 309 5.59e-17 81.3
Msa1079590 MtrunA17_Chr3g0093841 32.278 158 100 3 32 189 20 170 1.36e-16 80.1
Msa1079590 MtrunA17_Chr3g0093841 27.815 151 102 3 23 171 340 485 1.18e-14 74.3
Msa1079590 MtrunA17_Chr8g0354231 33.607 122 81 0 38 159 21 142 7.39e-18 82.4
Msa1079590 MtrunA17_Chr5g0405761 23.311 296 204 8 6 290 26 309 1.85e-13 69.7
Msa1079590 MtrunA17_Chr1g0176881 26.776 183 117 4 16 186 6 183 2.03e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1079590 AT4G02550.2 23.664 262 188 2 39 300 22 271 4.59e-20 88.2
Msa1079590 AT4G02550.4 23.664 262 188 2 39 300 22 271 4.59e-20 88.2
Msa1079590 AT4G02550.1 22.695 282 195 3 39 300 22 300 7.74e-19 85.5
Msa1079590 AT4G02550.5 22.695 282 195 3 39 300 22 300 7.74e-19 85.5
Msa1079590 AT4G02550.3 22.695 282 195 3 39 300 37 315 1.03e-18 85.1
Msa1079590 AT4G02210.1 22.878 271 193 5 33 303 180 434 4.72e-17 81.6
Msa1079590 AT4G02210.2 22.878 271 193 5 33 303 180 434 4.72e-17 81.6
Msa1079590 AT2G24960.2 25.676 222 157 4 34 251 322 539 1.37e-14 74.7
Msa1079590 AT2G24960.2 27.559 127 89 2 39 163 172 297 2.31e-11 65.1
Msa1079590 AT2G24960.1 27.559 127 89 2 39 163 172 297 2.17e-11 65.1

Find 81 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTGTCTCTACCCTTAT+TGG 0.077608 7_2:-78825566 None:intergenic
AGCTTACTTCACATGGAATT+TGG 0.190437 7_2:+78823668 Msa1079590:CDS
AGATGGAAGATAGCAATATT+TGG 0.218412 7_2:+78823625 Msa1079590:CDS
AACACTTCTTGCACCTCTTT+TGG 0.228701 7_2:-78825673 None:intergenic
GATTTGATATATAAGATTAA+AGG 0.229247 7_2:-78826552 None:intergenic
GATTTAAGATCATTCTAAAT+TGG 0.235394 7_2:+78825359 Msa1079590:CDS
TTCGTCTTCGCCTGTTCTTC+TGG 0.242435 7_2:+78820708 Msa1079590:five_prime_UTR
GTCGCCAGACTAACGGAATT+TGG 0.248526 7_2:+78823739 Msa1079590:CDS
TTCGTTACTTGCAGCTTTCT+TGG 0.251907 7_2:+78821722 Msa1079590:intron
ATATTTATGTTCAAACATTT+CGG 0.253592 7_2:+78826615 Msa1079590:three_prime_UTR
ACAATGTACCTGTGCCAATA+AGG 0.269725 7_2:+78825552 Msa1079590:CDS
TATTTATGTTCAAACATTTC+GGG 0.272010 7_2:+78826616 Msa1079590:three_prime_UTR
TAATCTACAACTACTAAATT+CGG 0.280492 7_2:-78826593 None:intergenic
AATGATATTCTCAGTCAAAA+TGG 0.308073 7_2:+78823879 Msa1079590:CDS
ATTCTCAGTCAAAATGGATT+TGG 0.308207 7_2:+78823885 Msa1079590:CDS
ACTTAGAGATCAAAGAAGTT+TGG 0.331117 7_2:+78823716 Msa1079590:CDS
CTGTATACCGCATTTGTTGC+GGG 0.344558 7_2:+78826457 Msa1079590:three_prime_UTR
GATGGAAGATAGCAATATTT+GGG 0.350278 7_2:+78823626 Msa1079590:CDS
CTCTAAATCAATATACTCAT+TGG 0.356023 7_2:-78825500 None:intergenic
GATATATGTGCTAAAGATAA+AGG 0.380018 7_2:+78825394 Msa1079590:CDS
TGCGGGAATTATTACACCTT+TGG 0.382661 7_2:+78826474 Msa1079590:three_prime_UTR
CAGTCAAAATGGATTTGGTT+GGG 0.385398 7_2:+78823890 Msa1079590:CDS
GATCTTAAATCGGAATCGTT+TGG 0.392338 7_2:-78825347 None:intergenic
CTAGTCTATGCAAGAGGTTT+AGG 0.393024 7_2:+78823579 Msa1079590:CDS
CTTAGAGATCAAAGAAGTTT+GGG 0.395713 7_2:+78823717 Msa1079590:CDS
GATTAAAGGAGTTAAAATCT+AGG 0.400479 7_2:-78826538 None:intergenic
AATCTACAACTACTAAATTC+GGG 0.402211 7_2:-78826592 None:intergenic
AATTTAGAATGATCTTAAAT+CGG 0.410859 7_2:-78825357 None:intergenic
ACTAACCTTGAGAGAATTGA+AGG 0.439754 7_2:-78821804 None:intergenic
GCGTCAAACTTTGGCGAAGA+TGG 0.444193 7_2:+78823844 Msa1079590:CDS
AGAGAGCTTACCAGAAGAAC+AGG 0.444626 7_2:-78820718 None:intergenic
AAACTTTGGCGAAGATGGTA+TGG 0.445605 7_2:+78823849 Msa1079590:CDS
AGCAAGGAATTTCACAATTG+AGG 0.453201 7_2:-78820595 None:intergenic
GTCTCTACCCTTATTGGCAC+AGG 0.454687 7_2:-78825560 None:intergenic
GATCGAGCTCCGAGAGAGTA+CGG 0.462532 7_2:-78820629 None:intergenic
CAATGTACCTGTGCCAATAA+GGG 0.467272 7_2:+78825553 Msa1079590:CDS
TTTGTGCAGTTGACGATTGA+AGG 0.468460 7_2:+78826401 Msa1079590:intron
TCCGCTATAAAGCAATCAAT+TGG 0.468621 7_2:+78825734 Msa1079590:CDS
ACGAAGTAGTTGAAGGAGTA+CGG 0.470940 7_2:-78820690 None:intergenic
CAATATTTGGGTTAAGAAAG+AGG 0.472672 7_2:+78823638 Msa1079590:CDS
TCAGTCAAAATGGATTTGGT+TGG 0.476299 7_2:+78823889 Msa1079590:CDS
AACTCTCCTCCGTACTCTCT+CGG 0.478652 7_2:+78820620 Msa1079590:five_prime_UTR
GCAAGAAGTGTTGAATGAAA+TGG 0.483806 7_2:+78825684 Msa1079590:CDS
ATTAAAGGAGTTAAAATCTA+GGG 0.502942 7_2:-78826537 None:intergenic
GTTACTTGCAGCTTTCTTGG+CGG 0.506956 7_2:+78821725 Msa1079590:intron
TAAGCAAAAGTGAAAACGCT+TGG 0.512123 7_2:-78821757 None:intergenic
TTTCACCTTCAATTCTCTCA+AGG 0.512283 7_2:+78821799 Msa1079590:five_prime_UTR
CGAAGTAGTTGAAGGAGTAC+GGG 0.515330 7_2:-78820689 None:intergenic
CAAAATGGATTTGGTTGGGA+TGG 0.515934 7_2:+78823894 Msa1079590:CDS
GGTTTAGGCCGCAAGACAAA+GGG 0.517366 7_2:+78823594 Msa1079590:CDS
TGAAGGATGATAACTTGAGC+TGG 0.523596 7_2:+78826418 Msa1079590:three_prime_UTR
GGCGAAGACGAAGTAGTTGA+AGG 0.531895 7_2:-78820697 None:intergenic
CTTCACATGGAATTTGGACA+TGG 0.534884 7_2:+78823674 Msa1079590:CDS
TGTGCTAAAGATAAAGGAGG+TGG 0.540390 7_2:+78825400 Msa1079590:CDS
TCTGTATACCGCATTTGTTG+CGG 0.549979 7_2:+78826456 Msa1079590:three_prime_UTR
AGGTTTAGGCCGCAAGACAA+AGG 0.552206 7_2:+78823593 Msa1079590:CDS
ACCAATTGATTGCTTTATAG+CGG 0.552413 7_2:-78825735 None:intergenic
AATGTAGATGAAGATGAAGA+AGG 0.559453 7_2:+78825475 Msa1079590:CDS
AACTTTGGCGAAGATGGTAT+GGG 0.564966 7_2:+78823850 Msa1079590:CDS
CCGTCGAAGATGAAAATGCA+TGG 0.574985 7_2:+78823934 Msa1079590:CDS
AGTAGAACGTGCAGTTAATG+TGG 0.581141 7_2:+78825429 Msa1079590:CDS
CAATAAGGGTAGAGACAAAG+AGG 0.586320 7_2:+78825567 Msa1079590:CDS
AAAGTGAAAACGCTTGGAGT+AGG 0.588544 7_2:-78821751 None:intergenic
ATGCAAGAGCTTACTTCACA+TGG 0.590187 7_2:+78823661 Msa1079590:CDS
TCTAGTCTAGTCTATGCAAG+AGG 0.592050 7_2:+78823573 Msa1079590:CDS
GGAAGGAAATACTCCAAAAG+AGG 0.596463 7_2:+78825660 Msa1079590:CDS
ATCTACAACTACTAAATTCG+GGG 0.601643 7_2:-78826591 None:intergenic
ATTTATGTTCAAACATTTCG+GGG 0.608149 7_2:+78826617 Msa1079590:three_prime_UTR
AGTTTGGGTCGCCAGACTAA+CGG 0.608284 7_2:+78823732 Msa1079590:CDS
AAGGAATTTCACAATTGAGG+TGG 0.609122 7_2:-78820592 None:intergenic
TGCATGGAATGAATATGTCA+AGG 0.618662 7_2:+78823950 Msa1079590:CDS
TACGGAGGAGAGTTGCAGCA+AGG 0.628884 7_2:-78820611 None:intergenic
AATAATTCCCGCAACAAATG+CGG 0.646757 7_2:-78826464 None:intergenic
AATAAGGGTAGAGACAAAGA+GGG 0.651555 7_2:+78825568 Msa1079590:CDS
ATATGTGCTAAAGATAAAGG+AGG 0.652322 7_2:+78825397 Msa1079590:CDS
ACTAACATAACATTAACCAA+AGG 0.659048 7_2:-78826490 None:intergenic
CATGGAGCGTGTATTAGCTG+AGG 0.663124 7_2:+78823692 Msa1079590:CDS
ATCTTCGCCAAAGTTTGACG+CGG 0.707008 7_2:-78823842 None:intergenic
TCTACAACTACTAAATTCGG+GGG 0.708680 7_2:-78826590 None:intergenic
CGAGCTCCGAGAGAGTACGG+AGG 0.737956 7_2:-78820626 None:intergenic
ATAAGGGTAGAGACAAAGAG+GGG 0.742794 7_2:+78825569 Msa1079590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAACATTTATTTTTTCTT+TGG - chr7_2:78820866-78820885 None:intergenic 10.0%
!!! ATGAATCTTTTTTTTTTTTT+TGG + chr7_2:78822822-78822841 Msa1079590:intron 10.0%
!! TGTTAGTATTAAAATTTATT+TGG + chr7_2:78824544-78824563 Msa1079590:intron 10.0%
!! GTTAGTATTAAAATTTATTT+GGG + chr7_2:78824545-78824564 Msa1079590:intron 10.0%
!! TTAGTATTAAAATTTATTTG+GGG + chr7_2:78824546-78824565 Msa1079590:intron 10.0%
!! AATGAAATAAAAAAAGATAA+AGG - chr7_2:78824729-78824748 None:intergenic 10.0%
!!! ATCAAATTTTTAAGTTTTTG+AGG - chr7_2:78820919-78820938 None:intergenic 15.0%
!! ACTAATAAAATAGATACTTT+CGG - chr7_2:78821029-78821048 None:intergenic 15.0%
!!! TCTTTTATATACAGATTAAT+AGG - chr7_2:78821251-78821270 None:intergenic 15.0%
!!! TTTATAAACTTTTACTTCAA+TGG + chr7_2:78822198-78822217 Msa1079590:intron 15.0%
!!! TTATAAACTTTTACTTCAAT+GGG + chr7_2:78822199-78822218 Msa1079590:intron 15.0%
!! AAATAATTGTGAAATCAAAT+AGG + chr7_2:78824260-78824279 Msa1079590:intron 15.0%
!!! TTATGTTTTAAATTGCTTTT+TGG + chr7_2:78825018-78825037 Msa1079590:intron 15.0%
!!! TATGTTTTAAATTGCTTTTT+GGG + chr7_2:78825019-78825038 Msa1079590:intron 15.0%
!! AAATACTTGATTATCTTATT+TGG + chr7_2:78825219-78825238 Msa1079590:intron 15.0%
!!! AATTTAGAATGATCTTAAAT+CGG - chr7_2:78825360-78825379 None:intergenic 15.0%
!! TTGTACAAATTAGTAAAAAA+AGG + chr7_2:78825635-78825654 Msa1079590:CDS 15.0%
!!! AGTTAATTCAAAATAAGTTT+TGG + chr7_2:78825914-78825933 Msa1079590:intron 15.0%
!! GATTTGATATATAAGATTAA+AGG - chr7_2:78826555-78826574 None:intergenic 15.0%
!! ATATTTATGTTCAAACATTT+CGG + chr7_2:78826615-78826634 Msa1079590:three_prime_UTR 15.0%
!!! ATTTTTAAGTTTTTGAGGTT+TGG - chr7_2:78820914-78820933 None:intergenic 20.0%
!! AATATGCAAATGACTAAAAT+TGG + chr7_2:78820942-78820961 Msa1079590:intron 20.0%
!!! CTCTTTTGTTAGTAATTTTA+TGG - chr7_2:78821126-78821145 None:intergenic 20.0%
!! TTGCAATTTAGATACATTTA+AGG + chr7_2:78821169-78821188 Msa1079590:intron 20.0%
!! TAAGATATAAGTATCAAAGA+GGG - chr7_2:78821292-78821311 None:intergenic 20.0%
!! TAATTGATACTCTATTGATA+TGG - chr7_2:78821696-78821715 None:intergenic 20.0%
!!! AAAACTTGTTGAGAATTATA+TGG + chr7_2:78821902-78821921 Msa1079590:intron 20.0%
!! CTAAAAAATAAAATGACAAC+TGG - chr7_2:78822036-78822055 None:intergenic 20.0%
!! CAAGATAAGAAATATATCTT+AGG + chr7_2:78823315-78823334 Msa1079590:intron 20.0%
!! TTCCTAAAAAATAACAGTTT+GGG - chr7_2:78824662-78824681 None:intergenic 20.0%
!! TTTCCTAAAAAATAACAGTT+TGG - chr7_2:78824663-78824682 None:intergenic 20.0%
!!! TTTAGGAAAAATTACACTTT+TGG + chr7_2:78824674-78824693 Msa1079590:intron 20.0%
!!! TTATTTCATTTTTTCCCTTT+TGG + chr7_2:78824739-78824758 Msa1079590:intron 20.0%
!! GCTTGAAAATAATATGAAAA+TGG + chr7_2:78824866-78824885 Msa1079590:intron 20.0%
!!! TTATTTCATTTTTGCTCTTT+TGG - chr7_2:78824893-78824912 None:intergenic 20.0%
!! TACTTATTGAAAGTTAAACA+GGG - chr7_2:78825117-78825136 None:intergenic 20.0%
!! ATACTTATTGAAAGTTAAAC+AGG - chr7_2:78825118-78825137 None:intergenic 20.0%
!!! GATTTAAGATCATTCTAAAT+TGG + chr7_2:78825359-78825378 Msa1079590:CDS 20.0%
!! ACAAATTAGTAAAAAAAGGA+TGG + chr7_2:78825639-78825658 Msa1079590:CDS 20.0%
!! AAAATATATTATTCGAACGT+AGG + chr7_2:78826030-78826049 Msa1079590:intron 20.0%
!!! ACTATTGGTTTAAATTTGTT+AGG + chr7_2:78826210-78826229 Msa1079590:intron 20.0%
!!! AAATTTGTTAGGTTATTGAA+TGG + chr7_2:78826221-78826240 Msa1079590:intron 20.0%
!!! AATTTGTTAGGTTATTGAAT+GGG + chr7_2:78826222-78826241 Msa1079590:intron 20.0%
!! ATTAAAGGAGTTAAAATCTA+GGG - chr7_2:78826540-78826559 None:intergenic 20.0%
!! TAATCTACAACTACTAAATT+CGG - chr7_2:78826596-78826615 None:intergenic 20.0%
!! TATTTATGTTCAAACATTTC+GGG + chr7_2:78826616-78826635 Msa1079590:three_prime_UTR 20.0%
! ATGACTAAAATTGGAAATCT+TGG + chr7_2:78820951-78820970 Msa1079590:intron 25.0%
! TGACTAAAATTGGAAATCTT+GGG + chr7_2:78820952-78820971 Msa1079590:intron 25.0%
!!! GATCCTCAAATATGTTTTTT+TGG + chr7_2:78821055-78821074 Msa1079590:intron 25.0%
! CTACCAAAAAAACATATTTG+AGG - chr7_2:78821061-78821080 None:intergenic 25.0%
!!! GTTTTTTTGGTAGTCAATTT+CGG + chr7_2:78821068-78821087 Msa1079590:intron 25.0%
!!! GTAGAAAATGTGTTTTTTGT+TGG + chr7_2:78821090-78821109 Msa1079590:intron 25.0%
! AAGATATAAGTATCAAAGAG+GGG - chr7_2:78821291-78821310 None:intergenic 25.0%
! CTAAGATATAAGTATCAAAG+AGG - chr7_2:78821293-78821312 None:intergenic 25.0%
!!! AGATTAAGTAGTTTGTTTTC+AGG - chr7_2:78821462-78821481 None:intergenic 25.0%
! AACAATACATGAAAATGACT+AGG - chr7_2:78821556-78821575 None:intergenic 25.0%
! CTAAATGCTAAATAATTGCT+GGG - chr7_2:78821579-78821598 None:intergenic 25.0%
! TGAAAAATTTGAGAAACTTC+AGG + chr7_2:78821952-78821971 Msa1079590:intron 25.0%
!!! TATTGGATTAGCATTGTATT+TGG + chr7_2:78822404-78822423 Msa1079590:intron 25.0%
!!! ATTGGATTAGCATTGTATTT+GGG + chr7_2:78822405-78822424 Msa1079590:intron 25.0%
!! TATAAGGTGCTAAATATCTA+GGG - chr7_2:78822900-78822919 None:intergenic 25.0%
! TAATATCTAGTCTCTCTATA+AGG - chr7_2:78822916-78822935 None:intergenic 25.0%
! AATGTAATTGAAAGGTCATT+TGG + chr7_2:78823009-78823028 Msa1079590:intron 25.0%
! ATGTAATTGAAAGGTCATTT+GGG + chr7_2:78823010-78823029 Msa1079590:intron 25.0%
!! GAAAAGTGATCAAATTTTAG+AGG + chr7_2:78823138-78823157 Msa1079590:intron 25.0%
! TTGATCTTCAGACAATTTAA+CGG - chr7_2:78823257-78823276 None:intergenic 25.0%
! GAAATATATCTTAGGTTTAG+TGG + chr7_2:78823323-78823342 Msa1079590:intron 25.0%
! TTTGTTACCGACATATTATT+TGG + chr7_2:78823372-78823391 Msa1079590:intron 25.0%
!!! CATTTTAATGTTCAGCTTAT+CGG + chr7_2:78823804-78823823 Msa1079590:CDS 25.0%
! AATGATATTCTCAGTCAAAA+TGG + chr7_2:78823879-78823898 Msa1079590:CDS 25.0%
! CTTATCACAACAAAAGAAAA+GGG - chr7_2:78824122-78824141 None:intergenic 25.0%
! TTAAAGCTAAATAATTGAGC+TGG + chr7_2:78824190-78824209 Msa1079590:intron 25.0%
! TAAAGCTAAATAATTGAGCT+GGG + chr7_2:78824191-78824210 Msa1079590:intron 25.0%
! ATGTAAGGTTCTATCAATAT+AGG - chr7_2:78824234-78824253 None:intergenic 25.0%
! CAATTATTTCGCTTAATGTA+AGG - chr7_2:78824249-78824268 None:intergenic 25.0%
! ATTGTGAAATCAAATAGGAA+AGG + chr7_2:78824265-78824284 Msa1079590:intron 25.0%
! TCATATCAGATATTGAAACA+GGG + chr7_2:78824490-78824509 Msa1079590:intron 25.0%
! GATTTCAAGCTTCAAATATA+TGG + chr7_2:78824776-78824795 Msa1079590:intron 25.0%
! TTGTTGGATTTAAAAGTGAT+TGG + chr7_2:78825055-78825074 Msa1079590:intron 25.0%
! TGTTGGATTTAAAAGTGATT+GGG + chr7_2:78825056-78825075 Msa1079590:intron 25.0%
! TAGCATGTATATTACTACTA+TGG - chr7_2:78825181-78825200 None:intergenic 25.0%
!!! TGATTATCTTATTTGGTTTG+TGG + chr7_2:78825226-78825245 Msa1079590:intron 25.0%
!!! GATTATCTTATTTGGTTTGT+GGG + chr7_2:78825227-78825246 Msa1079590:intron 25.0%
! TTACTCAAACAAAGCTAAAT+AGG - chr7_2:78825268-78825287 None:intergenic 25.0%
! AACAACAATCAATAATGAGT+TGG - chr7_2:78825295-78825314 None:intergenic 25.0%
! GATATATGTGCTAAAGATAA+AGG + chr7_2:78825394-78825413 Msa1079590:CDS 25.0%
! CTCTAAATCAATATACTCAT+TGG - chr7_2:78825503-78825522 None:intergenic 25.0%
! ATTAGTAAAAAAAGGATGGA+AGG + chr7_2:78825643-78825662 Msa1079590:CDS 25.0%
!!! TGAGAAAAAGAAGTATCTAA+TGG + chr7_2:78825807-78825826 Msa1079590:CDS 25.0%
! AAAAACAACTAAGATTACCT+CGG - chr7_2:78825849-78825868 None:intergenic 25.0%
!!! AGGTAATCTTAGTTGTTTTT+GGG + chr7_2:78825849-78825868 Msa1079590:intron 25.0%
!!! GTTTTTGGGTTTATTTTAGT+TGG + chr7_2:78825863-78825882 Msa1079590:intron 25.0%
!!! AAAATAAGTTTTGGAATCAC+AGG + chr7_2:78825923-78825942 Msa1079590:intron 25.0%
! GATATTGTGAGAGAATTAAA+AGG + chr7_2:78825947-78825966 Msa1079590:intron 25.0%
! GATACAATTAACTTCGAAAA+TGG + chr7_2:78825969-78825988 Msa1079590:intron 25.0%
! ACTAACATAACATTAACCAA+AGG - chr7_2:78826493-78826512 None:intergenic 25.0%
! GATTAAAGGAGTTAAAATCT+AGG - chr7_2:78826541-78826560 None:intergenic 25.0%
! AATCTACAACTACTAAATTC+GGG - chr7_2:78826595-78826614 None:intergenic 25.0%
! ATTTATGTTCAAACATTTCG+GGG + chr7_2:78826617-78826636 Msa1079590:three_prime_UTR 25.0%
!!! GTGTTTTTTGTTGGTTGTTA+CGG + chr7_2:78821099-78821118 Msa1079590:intron 30.0%
TATACTGTTATTCTGCATTC+TGG + chr7_2:78821508-78821527 Msa1079590:intron 30.0%
CCTAAATGCTAAATAATTGC+TGG - chr7_2:78821580-78821599 None:intergenic 30.0%
CCAGCAATTATTTAGCATTT+AGG + chr7_2:78821577-78821596 Msa1079590:intron 30.0%
!! TTACTGATCTACTTTTCACT+GGG + chr7_2:78822113-78822132 Msa1079590:intron 30.0%
AATCTATGCGATTCATCTTA+CGG + chr7_2:78822164-78822183 Msa1079590:intron 30.0%
! TTCTACATAATGGAATTCGA+AGG - chr7_2:78822267-78822286 None:intergenic 30.0%
GAATTCCATTATGTAGAAGA+AGG + chr7_2:78822269-78822288 Msa1079590:intron 30.0%
! TTTTGCCTTCTTCTACATAA+TGG - chr7_2:78822277-78822296 None:intergenic 30.0%
CCATTAATACAAAATGGATG+TGG - chr7_2:78822370-78822389 None:intergenic 30.0%
! CCACATCCATTTTGTATTAA+TGG + chr7_2:78822367-78822386 Msa1079590:intron 30.0%
! CATCCATTTTGTATTAATGG+CGG + chr7_2:78822370-78822389 Msa1079590:intron 30.0%
AATTCTTGTGAGTTAACATG+CGG + chr7_2:78822466-78822485 Msa1079590:intron 30.0%
TAAGAAGAAGATGAAGAAGA+GGG - chr7_2:78822636-78822655 None:intergenic 30.0%
! GGAATTCGAAGACAATTTTA+CGG - chr7_2:78822742-78822761 None:intergenic 30.0%
AATTGTCTTCGAATTCCAAA+TGG + chr7_2:78822745-78822764 Msa1079590:intron 30.0%
!!! TTTTTTTGGAAAACCGTTGT+AGG + chr7_2:78822836-78822855 Msa1079590:intron 30.0%
!! GAAAGTATTTACACCTACAA+CGG - chr7_2:78822852-78822871 None:intergenic 30.0%
TAGGTGTAAATACTTTCTTG+TGG + chr7_2:78822855-78822874 Msa1079590:intron 30.0%
TAAATACTTTCTTGTGGATG+TGG + chr7_2:78822861-78822880 Msa1079590:intron 30.0%
AAATACTTTCTTGTGGATGT+GGG + chr7_2:78822862-78822881 Msa1079590:intron 30.0%
! CTATAAGGTGCTAAATATCT+AGG - chr7_2:78822901-78822920 None:intergenic 30.0%
CTAGATATTATCTCAAAGAG+TGG + chr7_2:78822926-78822945 Msa1079590:intron 30.0%
TATTATCTCAAAGAGTGGAA+TGG + chr7_2:78822931-78822950 Msa1079590:intron 30.0%
! ACAACTCCTTGTAATTTTGA+GGG - chr7_2:78822963-78822982 None:intergenic 30.0%
! AACAACTCCTTGTAATTTTG+AGG - chr7_2:78822964-78822983 None:intergenic 30.0%
TTGGGATATTGAAGAAAAGA+TGG + chr7_2:78823028-78823047 Msa1079590:intron 30.0%
AGGGAAAGAGTAATAACTAA+CGG + chr7_2:78823214-78823233 Msa1079590:intron 30.0%
AATAACTAACGGTGTAAATG+AGG + chr7_2:78823225-78823244 Msa1079590:intron 30.0%
AACAGCTCCAAATAATATGT+CGG - chr7_2:78823382-78823401 None:intergenic 30.0%
! ACATATTATTTGGAGCTGTT+AGG + chr7_2:78823382-78823401 Msa1079590:intron 30.0%
! CATATTATTTGGAGCTGTTA+GGG + chr7_2:78823383-78823402 Msa1079590:intron 30.0%
!!! TTTGTTGCTTTTGATTGCTA+AGG + chr7_2:78823418-78823437 Msa1079590:intron 30.0%
AGATGGAAGATAGCAATATT+TGG + chr7_2:78823625-78823644 Msa1079590:CDS 30.0%
GATGGAAGATAGCAATATTT+GGG + chr7_2:78823626-78823645 Msa1079590:CDS 30.0%
! CAATATTTGGGTTAAGAAAG+AGG + chr7_2:78823638-78823657 Msa1079590:CDS 30.0%
ACTTAGAGATCAAAGAAGTT+TGG + chr7_2:78823716-78823735 Msa1079590:CDS 30.0%
CTTAGAGATCAAAGAAGTTT+GGG + chr7_2:78823717-78823736 Msa1079590:CDS 30.0%
! ATTCTCAGTCAAAATGGATT+TGG + chr7_2:78823885-78823904 Msa1079590:CDS 30.0%
GCTTATCACAACAAAAGAAA+AGG - chr7_2:78824123-78824142 None:intergenic 30.0%
CAATATAGGCATTCATAATC+AGG - chr7_2:78824220-78824239 None:intergenic 30.0%
TTGGTTAGTGATGTTCATAT+GGG - chr7_2:78824421-78824440 None:intergenic 30.0%
GTCATATCAGATATTGAAAC+AGG + chr7_2:78824489-78824508 Msa1079590:intron 30.0%
TTATGTCTAGTACTATGCTT+TGG + chr7_2:78824615-78824634 Msa1079590:intron 30.0%
! TGGTTGTGTTTTTCATTTGT+AGG + chr7_2:78824635-78824654 Msa1079590:intron 30.0%
!!! GACCCAAACTGTTATTTTTT+AGG + chr7_2:78824657-78824676 Msa1079590:intron 30.0%
GTTGCCTGAAATTAAGTTAA+GGG - chr7_2:78824701-78824720 None:intergenic 30.0%
AGTTGCCTGAAATTAAGTTA+AGG - chr7_2:78824702-78824721 None:intergenic 30.0%
TAACTTAATTTCAGGCAACT+TGG + chr7_2:78824702-78824721 Msa1079590:intron 30.0%
CATATGGAAATGAACCAAAA+GGG - chr7_2:78824756-78824775 None:intergenic 30.0%
! TTTGAAGCTTGAAATCCATA+TGG - chr7_2:78824772-78824791 None:intergenic 30.0%
TTTCCCAATCTTCAAATCTA+TGG + chr7_2:78824805-78824824 Msa1079590:intron 30.0%
AGACCATAGATTTGAAGATT+GGG - chr7_2:78824811-78824830 None:intergenic 30.0%
AAGACCATAGATTTGAAGAT+TGG - chr7_2:78824812-78824831 None:intergenic 30.0%
! TCTAAAATTCATACGCAAAC+AGG - chr7_2:78824840-78824859 None:intergenic 30.0%
GTTACCTGCAATTAAGTTAA+GGG + chr7_2:78824933-78824952 Msa1079590:intron 30.0%
! AATAGGCAACATTAGACTTT+TGG - chr7_2:78824960-78824979 None:intergenic 30.0%
!!! ATGTTGCCTATTTTTTGTAG+TGG + chr7_2:78824968-78824987 Msa1079590:intron 30.0%
TCATGACCACTACAAAAAAT+AGG - chr7_2:78824977-78824996 None:intergenic 30.0%
!!! TAAATTGCTTTTTGGGTCTT+AGG + chr7_2:78825026-78825045 Msa1079590:intron 30.0%
ATTCTGGATTGTTATAGCTA+CGG + chr7_2:78825084-78825103 Msa1079590:intron 30.0%
CTTTCAATAAGTATATGCCA+TGG + chr7_2:78825124-78825143 Msa1079590:intron 30.0%
! GTATATGCCATGGTTTATTT+TGG + chr7_2:78825134-78825153 Msa1079590:intron 30.0%
GTAGTAATATACATGCTAGT+CGG + chr7_2:78825183-78825202 Msa1079590:intron 30.0%
ATATGTGCTAAAGATAAAGG+AGG + chr7_2:78825397-78825416 Msa1079590:CDS 30.0%
AATGTAGATGAAGATGAAGA+AGG + chr7_2:78825475-78825494 Msa1079590:CDS 30.0%
! TTTTTCTTTGTTGCAGAACT+TGG - chr7_2:78825529-78825548 None:intergenic 30.0%
ACCAATTGATTGCTTTATAG+CGG - chr7_2:78825738-78825757 None:intergenic 30.0%
!! TTGAGAATCGCTATTTTGTT+TGG - chr7_2:78825772-78825791 None:intergenic 30.0%
! TACTTCTTTTTCTCACTCAA+CGG - chr7_2:78825802-78825821 None:intergenic 30.0%
!! GAGGTAATCTTAGTTGTTTT+TGG + chr7_2:78825848-78825867 Msa1079590:intron 30.0%
ATAGGTTGTGTAACACTTAT+TGG + chr7_2:78826129-78826148 Msa1079590:intron 30.0%
TTGTCCACAAAAAATCAAGT+TGG - chr7_2:78826191-78826210 None:intergenic 30.0%
!!! GATTTTTTGTGGACAACTAT+TGG + chr7_2:78826195-78826214 Msa1079590:intron 30.0%
! TCTTGTTAGTTGGTATACAT+GGG + chr7_2:78826327-78826346 Msa1079590:intron 30.0%
ATCTACAACTACTAAATTCG+GGG - chr7_2:78826594-78826613 None:intergenic 30.0%
AAGGAATTTCACAATTGAGG+TGG - chr7_2:78820595-78820614 None:intergenic 35.0%
AGCAAGGAATTTCACAATTG+AGG - chr7_2:78820598-78820617 None:intergenic 35.0%
GACATAATGAACAATAAGCG+TGG - chr7_2:78820817-78820836 None:intergenic 35.0%
TTACTAACAAAAGAGAGACC+AGG + chr7_2:78821131-78821150 Msa1079590:intron 35.0%
TACTAACAAAAGAGAGACCA+GGG + chr7_2:78821132-78821151 Msa1079590:intron 35.0%
! TTTCGAGCAAACAACCATTT+TGG - chr7_2:78821227-78821246 None:intergenic 35.0%
GGGTTTGTGTGCATATATAT+TGG + chr7_2:78821428-78821447 Msa1079590:intron 35.0%
ATACATGAAAATGACTAGGC+TGG - chr7_2:78821552-78821571 None:intergenic 35.0%
! TAGTGCTGCTGAATATATAC+TGG - chr7_2:78821628-78821647 None:intergenic 35.0%
TTCAGCAGCACTATTAATGT+TGG + chr7_2:78821635-78821654 Msa1079590:intron 35.0%
ATGTTGGAGAAATGTGTTAC+TGG + chr7_2:78821651-78821670 Msa1079590:intron 35.0%
TAAGCAAAAGTGAAAACGCT+TGG - chr7_2:78821760-78821779 None:intergenic 35.0%
TTTCACCTTCAATTCTCTCA+AGG + chr7_2:78821799-78821818 Msa1079590:five_prime_UTR 35.0%
ACTAACCTTGAGAGAATTGA+AGG - chr7_2:78821807-78821826 None:intergenic 35.0%
TTCATTGATCTCTACAGAGA+GGG - chr7_2:78821936-78821955 None:intergenic 35.0%
TTTCATTGATCTCTACAGAG+AGG - chr7_2:78821937-78821956 None:intergenic 35.0%
! GAGAAACTTCAGGATTTTCT+TGG + chr7_2:78821962-78821981 Msa1079590:intron 35.0%
!! CTTACTGATCTACTTTTCAC+TGG + chr7_2:78822112-78822131 Msa1079590:intron 35.0%
TCTCCGCCATTAATACAAAA+TGG - chr7_2:78822376-78822395 None:intergenic 35.0%
! GAAGCCTTTATTTGATGCTT+TGG + chr7_2:78822507-78822526 Msa1079590:intron 35.0%
! CGATGATTCTCAATTTTCAC+TGG - chr7_2:78822562-78822581 None:intergenic 35.0%
ATAACCTTGTCATGACTTTG+TGG + chr7_2:78822582-78822601 Msa1079590:intron 35.0%
GTAAGAAGAAGATGAAGAAG+AGG - chr7_2:78822637-78822656 None:intergenic 35.0%
! GTTCTTCTTGGTTGCATTTT+TGG + chr7_2:78822671-78822690 Msa1079590:intron 35.0%
!! TGCATTTTTGGATCCCATTA+TGG + chr7_2:78822683-78822702 Msa1079590:intron 35.0%
!! ATTTTTGGATCCCATTATGG+AGG + chr7_2:78822686-78822705 Msa1079590:intron 35.0%
ATACTCATCGTACTACCATT+TGG - chr7_2:78822763-78822782 None:intergenic 35.0%
AAACACCCCTCAAAATTACA+AGG + chr7_2:78822954-78822973 Msa1079590:intron 35.0%
! CAACTCCTTGTAATTTTGAG+GGG - chr7_2:78822962-78822981 None:intergenic 35.0%
ATTACATTCCTTGCACTTGA+AGG - chr7_2:78822997-78823016 None:intergenic 35.0%
GTGCAAGGAATGTAATTGAA+AGG + chr7_2:78823001-78823020 Msa1079590:intron 35.0%
!! AATTTTAGAGGCTCAAGACT+TGG + chr7_2:78823150-78823169 Msa1079590:intron 35.0%
! GCTTTTATCTGTTGTTGATG+AGG + chr7_2:78823174-78823193 Msa1079590:intron 35.0%
AGGAGTTAACCAACTAACAA+AGG + chr7_2:78823194-78823213 Msa1079590:intron 35.0%
GGAGTTAACCAACTAACAAA+GGG + chr7_2:78823195-78823214 Msa1079590:intron 35.0%
TACTCTTTCCCTTTGTTAGT+TGG - chr7_2:78823206-78823225 None:intergenic 35.0%
! TTCTTTTTCCCTTTGTCTTG+CGG - chr7_2:78823605-78823624 None:intergenic 35.0%
GACAAAGGGAAAAAGAAAGA+TGG + chr7_2:78823608-78823627 Msa1079590:CDS 35.0%
AGCTTACTTCACATGGAATT+TGG + chr7_2:78823668-78823687 Msa1079590:CDS 35.0%
! TTTTCCAAATTCCGTTAGTC+TGG - chr7_2:78823746-78823765 None:intergenic 35.0%
! TCAGTCAAAATGGATTTGGT+TGG + chr7_2:78823889-78823908 Msa1079590:CDS 35.0%
! CAGTCAAAATGGATTTGGTT+GGG + chr7_2:78823890-78823909 Msa1079590:CDS 35.0%
TGCATGGAATGAATATGTCA+AGG + chr7_2:78823950-78823969 Msa1079590:CDS 35.0%
ATCACAACAAAAGAAAAGGG+AGG - chr7_2:78824119-78824138 None:intergenic 35.0%
AACAAAAAACACCAGTGTAG+AGG - chr7_2:78824155-78824174 None:intergenic 35.0%
!!! ACACTGGTGTTTTTTGTTAG+AGG + chr7_2:78824157-78824176 Msa1079590:intron 35.0%
!!! CACTGGTGTTTTTTGTTAGA+GGG + chr7_2:78824158-78824177 Msa1079590:intron 35.0%
!! TTAGAGGGGGGTATTATATA+CGG - chr7_2:78824384-78824403 None:intergenic 35.0%
TGGTTAGTGATGTTCATATG+GGG - chr7_2:78824420-78824439 None:intergenic 35.0%
GTTGGTTAGTGATGTTCATA+TGG - chr7_2:78824422-78824441 None:intergenic 35.0%
TGGTCCCTTAACTTAATTTC+AGG + chr7_2:78824694-78824713 Msa1079590:intron 35.0%
CCATATGGAAATGAACCAAA+AGG - chr7_2:78824757-78824776 None:intergenic 35.0%
!!! CCTTTTGGTTCATTTCCATA+TGG + chr7_2:78824754-78824773 Msa1079590:intron 35.0%
CTTAATTGCAGGTAACGATT+TGG - chr7_2:78824929-78824948 None:intergenic 35.0%
CGTTACCTGCAATTAAGTTA+AGG + chr7_2:78824932-78824951 Msa1079590:intron 35.0%
AAGTGATTGGGTTTAGATTC+TGG + chr7_2:78825068-78825087 Msa1079590:intron 35.0%
TTCTGGATTGTTATAGCTAC+GGG + chr7_2:78825085-78825104 Msa1079590:intron 35.0%
ACCACAACCAAAATAAACCA+TGG - chr7_2:78825144-78825163 None:intergenic 35.0%
!! ATTTGGTTTGTGGGCAAAAA+AGG + chr7_2:78825236-78825255 Msa1079590:intron 35.0%
AAACAAAGCTAAATAGGACC+TGG - chr7_2:78825262-78825281 None:intergenic 35.0%
GATCTTAAATCGGAATCGTT+TGG - chr7_2:78825350-78825369 None:intergenic 35.0%
!! GCAAGAAGTGTTGAATGAAA+TGG + chr7_2:78825684-78825703 Msa1079590:CDS 35.0%
TCCGCTATAAAGCAATCAAT+TGG + chr7_2:78825734-78825753 Msa1079590:CDS 35.0%
AACATGAACAAAGTCACTCT+AGG - chr7_2:78826087-78826106 None:intergenic 35.0%
ATGTTCAGAGATTGCATTGT+AGG + chr7_2:78826102-78826121 Msa1079590:intron 35.0%
TGTGTAACACTTATTGGTGA+AGG + chr7_2:78826135-78826154 Msa1079590:intron 35.0%
!! CACAAAAAATCAAGTTGGCA+TGG - chr7_2:78826186-78826205 None:intergenic 35.0%
!!! CATGCCAACTTGATTTTTTG+TGG + chr7_2:78826184-78826203 Msa1079590:intron 35.0%
! CTCTTGTTAGTTGGTATACA+TGG + chr7_2:78826326-78826345 Msa1079590:intron 35.0%
AATAATTCCCGCAACAAATG+CGG - chr7_2:78826467-78826486 None:intergenic 35.0%
TCTACAACTACTAAATTCGG+GGG - chr7_2:78826593-78826612 None:intergenic 35.0%
ACGAAGTAGTTGAAGGAGTA+CGG - chr7_2:78820693-78820712 None:intergenic 40.0%
TGAACAATAAGCGTGGTGTT+AGG - chr7_2:78820810-78820829 None:intergenic 40.0%
GTAGTTAGTGTTATCCAGCA+GGG - chr7_2:78821341-78821360 None:intergenic 40.0%
TTCGTTACTTGCAGCTTTCT+TGG + chr7_2:78821722-78821741 Msa1079590:intron 40.0%
AAAGTGAAAACGCTTGGAGT+AGG - chr7_2:78821754-78821773 None:intergenic 40.0%
GAGGACAATGAAGAAGAAGA+GGG - chr7_2:78822315-78822334 None:intergenic 40.0%
TGAGGACAATGAAGAAGAAG+AGG - chr7_2:78822316-78822335 None:intergenic 40.0%
AGTAGAACACAGTAGTGATG+AGG - chr7_2:78822334-78822353 None:intergenic 40.0%
! GGCTCCAAAGCATCAAATAA+AGG - chr7_2:78822514-78822533 None:intergenic 40.0%
TTCACCACAAAGTCATGACA+AGG - chr7_2:78822589-78822608 None:intergenic 40.0%
CTTCTTACCTGTTCTCATAG+TGG + chr7_2:78822649-78822668 Msa1079590:intron 40.0%
AGAAGAACCACTATGAGAAC+AGG - chr7_2:78822659-78822678 None:intergenic 40.0%
GTTCTCATAGTGGTTCTTCT+TGG + chr7_2:78822659-78822678 Msa1079590:intron 40.0%
TCGAGAATCTCCTCCATAAT+GGG - chr7_2:78822699-78822718 None:intergenic 40.0%
GTGGATGTGGGATATACAAA+TGG + chr7_2:78822874-78822893 Msa1079590:intron 40.0%
TCTAGTCTAGTCTATGCAAG+AGG + chr7_2:78823573-78823592 Msa1079590:CDS 40.0%
CTAGTCTATGCAAGAGGTTT+AGG + chr7_2:78823579-78823598 Msa1079590:CDS 40.0%
ATGCAAGAGCTTACTTCACA+TGG + chr7_2:78823661-78823680 Msa1079590:CDS 40.0%
CTTCACATGGAATTTGGACA+TGG + chr7_2:78823674-78823693 Msa1079590:CDS 40.0%
TGAAAAACCGCGTCAAACTT+TGG + chr7_2:78823835-78823854 Msa1079590:CDS 40.0%
AAACTTTGGCGAAGATGGTA+TGG + chr7_2:78823849-78823868 Msa1079590:CDS 40.0%
AACTTTGGCGAAGATGGTAT+GGG + chr7_2:78823850-78823869 Msa1079590:CDS 40.0%
! CAAAATGGATTTGGTTGGGA+TGG + chr7_2:78823894-78823913 Msa1079590:CDS 40.0%
! CCATGCATTTTCATCTTCGA+CGG - chr7_2:78823937-78823956 None:intergenic 40.0%
AAGGTTGTCATCATCAACGA+AGG - chr7_2:78824074-78824093 None:intergenic 40.0%
AAAAGAAAAGGGAGGAAGCA+TGG - chr7_2:78824111-78824130 None:intergenic 40.0%
CAGACTTGTGTAAGGAATCA+TGG - chr7_2:78824338-78824357 None:intergenic 40.0%
GGTATTATATACGGGTAGGA+TGG - chr7_2:78824375-78824394 None:intergenic 40.0%
!! TAGAGGGGGGTATTATATAC+GGG - chr7_2:78824383-78824402 None:intergenic 40.0%
TCATGTGATTCTGTTAGAGG+GGG - chr7_2:78824397-78824416 None:intergenic 40.0%
GTCATGTGATTCTGTTAGAG+GGG - chr7_2:78824398-78824417 None:intergenic 40.0%
GGTCATGTGATTCTGTTAGA+GGG - chr7_2:78824399-78824418 None:intergenic 40.0%
TGCATATCCAAGAAGAGAGT+GGG - chr7_2:78824464-78824483 None:intergenic 40.0%
ATGCATATCCAAGAAGAGAG+TGG - chr7_2:78824465-78824484 None:intergenic 40.0%
TGGTCCCTTAACTTAATTGC+AGG - chr7_2:78824940-78824959 None:intergenic 40.0%
TCTGGATTGTTATAGCTACG+GGG + chr7_2:78825086-78825105 Msa1079590:intron 40.0%
!!! GCCATGGTTTATTTTGGTTG+TGG + chr7_2:78825140-78825159 Msa1079590:intron 40.0%
TGTGCTAAAGATAAAGGAGG+TGG + chr7_2:78825400-78825419 Msa1079590:CDS 40.0%
AGTAGAACGTGCAGTTAATG+TGG + chr7_2:78825429-78825448 Msa1079590:CDS 40.0%
ACAATGTACCTGTGCCAATA+AGG + chr7_2:78825552-78825571 Msa1079590:CDS 40.0%
CAATGTACCTGTGCCAATAA+GGG + chr7_2:78825553-78825572 Msa1079590:CDS 40.0%
GGAAGGAAATACTCCAAAAG+AGG + chr7_2:78825660-78825679 Msa1079590:CDS 40.0%
! AACACTTCTTGCACCTCTTT+TGG - chr7_2:78825676-78825695 None:intergenic 40.0%
TAGAAATCCCGGACTTACAA+AGG + chr7_2:78826058-78826077 Msa1079590:intron 40.0%
TAGGATTCCTTTGTAAGTCC+GGG - chr7_2:78826068-78826087 None:intergenic 40.0%
CTAGGATTCCTTTGTAAGTC+CGG - chr7_2:78826069-78826088 None:intergenic 40.0%
GATTGCATTGTAGGCTCAAT+AGG + chr7_2:78826111-78826130 Msa1079590:intron 40.0%
TCACTAGTGCTCTTGTTAGT+TGG + chr7_2:78826317-78826336 Msa1079590:intron 40.0%
TTTGTGCAGTTGACGATTGA+AGG + chr7_2:78826401-78826420 Msa1079590:intron 40.0%
TGAAGGATGATAACTTGAGC+TGG + chr7_2:78826418-78826437 Msa1079590:three_prime_UTR 40.0%
! TCTGTATACCGCATTTGTTG+CGG + chr7_2:78826456-78826475 Msa1079590:three_prime_UTR 40.0%
TGCGGGAATTATTACACCTT+TGG + chr7_2:78826474-78826493 Msa1079590:three_prime_UTR 40.0%
! CGAAGTAGTTGAAGGAGTAC+GGG - chr7_2:78820692-78820711 None:intergenic 45.0%
AGAGAGCTTACCAGAAGAAC+AGG - chr7_2:78820721-78820740 None:intergenic 45.0%
! AGCGTGGTGTTAGGAAACTA+GGG - chr7_2:78820801-78820820 None:intergenic 45.0%
! AAGCGTGGTGTTAGGAAACT+AGG - chr7_2:78820802-78820821 None:intergenic 45.0%
AAAAGAGAGACCAGGGAAGT+AGG + chr7_2:78821139-78821158 Msa1079590:intron 45.0%
AAAGAGAGACCAGGGAAGTA+GGG + chr7_2:78821140-78821159 Msa1079590:intron 45.0%
CAAACAAATCCCTACTTCCC+TGG - chr7_2:78821152-78821171 None:intergenic 45.0%
! TTTTGGTCCCTGAATGTACG+CGG - chr7_2:78821210-78821229 None:intergenic 45.0%
CGTACATTCAGGGACCAAAA+TGG + chr7_2:78821210-78821229 Msa1079590:intron 45.0%
! TAAGTTGTTTCAGACCCTGC+TGG + chr7_2:78821324-78821343 Msa1079590:intron 45.0%
CGTAGTTAGTGTTATCCAGC+AGG - chr7_2:78821342-78821361 None:intergenic 45.0%
GTTACTTGCAGCTTTCTTGG+CGG + chr7_2:78821725-78821744 Msa1079590:intron 45.0%
TTGTGCTTCGTGTATGTGCT+AGG + chr7_2:78822085-78822104 Msa1079590:intron 45.0%
CTATGCGATTCATCTTACGG+AGG + chr7_2:78822167-78822186 Msa1079590:intron 45.0%
TGGCGGAGAGAATGTTGTAT+TGG + chr7_2:78822387-78822406 Msa1079590:intron 45.0%
! TCGTTGATGGGTGCAAAAGA+AGG + chr7_2:78822438-78822457 Msa1079590:intron 45.0%
CTCGAGAATCTCCTCCATAA+TGG - chr7_2:78822700-78822719 None:intergenic 45.0%
ATTTCCGTCCTTCAAGTGCA+AGG + chr7_2:78822986-78823005 Msa1079590:intron 45.0%
CATTCCTTGCACTTGAAGGA+CGG - chr7_2:78822993-78823012 None:intergenic 45.0%
AAGGAATCTCGTAGATTGCG+TGG + chr7_2:78823437-78823456 Msa1079590:intron 45.0%
ATCTTCGCCAAAGTTTGACG+CGG - chr7_2:78823845-78823864 None:intergenic 45.0%
CCGTCGAAGATGAAAATGCA+TGG + chr7_2:78823934-78823953 Msa1079590:CDS 45.0%
CATGGCACGGATCAGAATAA+AGG - chr7_2:78824093-78824112 None:intergenic 45.0%
! AGGGCATTCAGACTTGTGTA+AGG - chr7_2:78824346-78824365 None:intergenic 45.0%
CATGTGATTCTGTTAGAGGG+GGG - chr7_2:78824396-78824415 None:intergenic 45.0%
GGGTCATGTGATTCTGTTAG+AGG - chr7_2:78824400-78824419 None:intergenic 45.0%
GCATATCCAAGAAGAGAGTG+GGG - chr7_2:78824463-78824482 None:intergenic 45.0%
GGGTCTTAGGTCATGTTTGT+TGG + chr7_2:78825039-78825058 Msa1079590:intron 45.0%
CTGGATTGTTATAGCTACGG+GGG + chr7_2:78825087-78825106 Msa1079590:intron 45.0%
!!! GCTTCTATGTTTTGAGACCG+AGG + chr7_2:78825829-78825848 Msa1079590:exon 45.0%
CGTAGGTCTCTTAGAAATCC+CGG + chr7_2:78826047-78826066 Msa1079590:intron 45.0%
! CTGTATACCGCATTTGTTGC+GGG + chr7_2:78826457-78826476 Msa1079590:three_prime_UTR 45.0%
CAACTACTAAATTCGGGGGT+TGG - chr7_2:78826589-78826608 None:intergenic 45.0%
!!! ATGATATTTTATTTATTTAA+TGG + chr7_2:78822784-78822803 Msa1079590:intron 5.0%
!! AAATGAAATAAAAAAAATAA+AGG + chr7_2:78824902-78824921 Msa1079590:intron 5.0%
AACTCTCCTCCGTACTCTCT+CGG + chr7_2:78820620-78820639 Msa1079590:five_prime_UTR 50.0%
GGCGAAGACGAAGTAGTTGA+AGG - chr7_2:78820700-78820719 None:intergenic 50.0%
TTCGTCTTCGCCTGTTCTTC+TGG + chr7_2:78820708-78820727 Msa1079590:five_prime_UTR 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG - chr7_2:78820764-78820783 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr7_2:78820763-78820782 None:intergenic 50.0%
CACTCCATGTGAGTGCTATG+CGG + chr7_2:78821395-78821414 Msa1079590:intron 50.0%
ACTCCATGTGAGTGCTATGC+GGG + chr7_2:78821396-78821415 Msa1079590:intron 50.0%
TGCGATTCATCTTACGGAGG+TGG + chr7_2:78822170-78822189 Msa1079590:intron 50.0%
GGCTTACCTCTCTCGTTGAT+GGG + chr7_2:78822426-78822445 Msa1079590:intron 50.0%
TTTGCACCCATCAACGAGAG+AGG - chr7_2:78822435-78822454 None:intergenic 50.0%
! TTTGGAGCCTCTCGAAAACG+TGG + chr7_2:78822525-78822544 Msa1079590:intron 50.0%
TTGGAGCCTCTCGAAAACGT+GGG + chr7_2:78822526-78822545 Msa1079590:intron 50.0%
!! CATCAACCCACGTTTTCGAG+AGG - chr7_2:78822535-78822554 None:intergenic 50.0%
AGGTTTAGGCCGCAAGACAA+AGG + chr7_2:78823593-78823612 Msa1079590:CDS 50.0%
GGTTTAGGCCGCAAGACAAA+GGG + chr7_2:78823594-78823613 Msa1079590:CDS 50.0%
CATGGAGCGTGTATTAGCTG+AGG + chr7_2:78823692-78823711 Msa1079590:CDS 50.0%
AGTTTGGGTCGCCAGACTAA+CGG + chr7_2:78823732-78823751 Msa1079590:CDS 50.0%
GTCGCCAGACTAACGGAATT+TGG + chr7_2:78823739-78823758 Msa1079590:CDS 50.0%
GCGTCAAACTTTGGCGAAGA+TGG + chr7_2:78823844-78823863 Msa1079590:CDS 50.0%
! AAAAGGGAGGAAGCATGGCA+CGG - chr7_2:78824106-78824125 None:intergenic 50.0%
ACACCAGTGTAGAGGAAGCA+TGG - chr7_2:78824147-78824166 None:intergenic 50.0%
!! GGGGGGTATTATATACGGGT+AGG - chr7_2:78824379-78824398 None:intergenic 50.0%
CCATGTGGGAGAGAATGAGT+TGG - chr7_2:78824440-78824459 None:intergenic 50.0%
CCAACTCATTCTCTCCCACA+TGG + chr7_2:78824437-78824456 Msa1079590:intron 50.0%
GTTTGTGGGCAAAAAAGGCC+AGG + chr7_2:78825241-78825260 Msa1079590:intron 50.0%
TACGGAGGAGAGTTGCAGCA+AGG - chr7_2:78820614-78820633 None:intergenic 55.0%
GATCGAGCTCCGAGAGAGTA+CGG - chr7_2:78820632-78820651 None:intergenic 55.0%
GAGAGAGAGAGAGAGGGAGA+GGG - chr7_2:78820758-78820777 None:intergenic 55.0%
AGAGAGAGAGAGAGAGGGAG+AGG - chr7_2:78820759-78820778 None:intergenic 55.0%
CTCCATGTGAGTGCTATGCG+GGG + chr7_2:78821397-78821416 Msa1079590:intron 55.0%
TGCTATGCGGGGCAAAGTCA+GGG + chr7_2:78821408-78821427 Msa1079590:intron 55.0%
GGGCTTACCTCTCTCGTTGA+TGG + chr7_2:78822425-78822444 Msa1079590:intron 55.0%
ACGGGTAGGATGGTGTGTGA+GGG - chr7_2:78824365-78824384 None:intergenic 55.0%
TACGGGTAGGATGGTGTGTG+AGG - chr7_2:78824366-78824385 None:intergenic 55.0%
AGAAGAGAGTGGGGCCATGT+GGG - chr7_2:78824454-78824473 None:intergenic 55.0%
AAGAAGAGAGTGGGGCCATG+TGG - chr7_2:78824455-78824474 None:intergenic 55.0%
ACATGGCCCCACTCTCTTCT+TGG + chr7_2:78824454-78824473 Msa1079590:intron 55.0%
GAGAGAGAGGGAGAGGGAGA+GGG - chr7_2:78820752-78820771 None:intergenic 60.0%
AGAGAGAGAGGGAGAGGGAG+AGG - chr7_2:78820753-78820772 None:intergenic 60.0%
TCACAGCGCCGCGTACATTC+AGG + chr7_2:78821199-78821218 Msa1079590:intron 60.0%
CACAGCGCCGCGTACATTCA+GGG + chr7_2:78821200-78821219 Msa1079590:intron 60.0%
TGCCCCGCATAGCACTCACA+TGG - chr7_2:78821402-78821421 None:intergenic 60.0%
GTGCTATGCGGGGCAAAGTC+AGG + chr7_2:78821407-78821426 Msa1079590:intron 60.0%
GCGCCATGCTTCCTCTACAC+TGG + chr7_2:78824141-78824160 Msa1079590:intron 60.0%
! CGAGCTCCGAGAGAGTACGG+AGG - chr7_2:78820629-78820648 None:intergenic 65.0%
GAGGGAGAGGGAGAGGGAGA+GGG - chr7_2:78820740-78820759 None:intergenic 65.0%
AGAGGGAGAGGGAGAGGGAG+AGG - chr7_2:78820741-78820760 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 78820579 78826651 78820579 ID=Msa1079590;Name=Msa1079590
chr7_2 mRNA 78820579 78826651 78820579 ID=Msa1079590-mRNA-1;Parent=Msa1079590;Name=Msa1079590-mRNA-1;_AED=0.03;_eAED=0.03;_QI=238|1|1|1|0.25|0.2|5|249|304
chr7_2 exon 78820579 78820729 78820579 ID=Msa1079590-mRNA-1:exon:19651;Parent=Msa1079590-mRNA-1
chr7_2 exon 78821736 78821820 78821736 ID=Msa1079590-mRNA-1:exon:19652;Parent=Msa1079590-mRNA-1
chr7_2 exon 78823565 78823971 78823565 ID=Msa1079590-mRNA-1:exon:19653;Parent=Msa1079590-mRNA-1
chr7_2 exon 78825334 78825850 78825334 ID=Msa1079590-mRNA-1:exon:19654;Parent=Msa1079590-mRNA-1
chr7_2 exon 78826410 78826651 78826410 ID=Msa1079590-mRNA-1:exon:19655;Parent=Msa1079590-mRNA-1
chr7_2 five_prime_UTR 78820579 78820729 78820579 ID=Msa1079590-mRNA-1:five_prime_utr;Parent=Msa1079590-mRNA-1
chr7_2 five_prime_UTR 78821736 78821820 78821736 ID=Msa1079590-mRNA-1:five_prime_utr;Parent=Msa1079590-mRNA-1
chr7_2 five_prime_UTR 78823565 78823566 78823565 ID=Msa1079590-mRNA-1:five_prime_utr;Parent=Msa1079590-mRNA-1
chr7_2 CDS 78823567 78823971 78823567 ID=Msa1079590-mRNA-1:cds;Parent=Msa1079590-mRNA-1
chr7_2 CDS 78825334 78825843 78825334 ID=Msa1079590-mRNA-1:cds;Parent=Msa1079590-mRNA-1
chr7_2 three_prime_UTR 78825844 78825850 78825844 ID=Msa1079590-mRNA-1:three_prime_utr;Parent=Msa1079590-mRNA-1
chr7_2 three_prime_UTR 78826410 78826651 78826410 ID=Msa1079590-mRNA-1:three_prime_utr;Parent=Msa1079590-mRNA-1
Gene Sequence

>Msa1079590

ATGAATTCTAGTCTAGTCTATGCAAGAGGTTTAGGCCGCAAGACAAAGGGAAAAAGAAAGATGGAAGATAGCAATATTTGGGTTAAGAAAGAGGATGCAAGAGCTTACTTCACATGGAATTTGGACATGGAGCGTGTATTAGCTGAGGCACTTAGAGATCAAAGAAGTTTGGGTCGCCAGACTAACGGAATTTGGAAAACAGAAGCATACAAAGCTGCAGCTGATGTGTTGTCGACACATTTTAATGTTCAGCTTATCGGAGAGAATGTGAAAAACCGCGTCAAACTTTGGCGAAGATGGTATGGGATAGTTAATGATATTCTCAGTCAAAATGGATTTGGTTGGGATGGCACAAACTGTATGATTACCGTCGAAGATGAAAATGCATGGAATGAATATGTCAAGTCTCATGAAGAAGCCAAACGATTCCGATTTAAGATCATTCTAAATTGGAATGACATTGTAGATATATGTGCTAAAGATAAAGGAGGTGGAATTCAAGTAGAACGTGCAGTTAATGTGGATGATGTCACGAGCAAAGATGCAAATGTAGATGAAGATGAAGAAGGTTCCAATGAGTATATTGATTTAGAGAAACCAAGTTCTGCAACAAAGAAAAAAGTACAATGTACCTGTGCCAATAAGGGTAGAGACAAAGAGGGGATGATCGACTCTATGAGAGAAGTTGCTGAGATATTGAAAGACTTTGTACAAATTAGTAAAAAAAGGATGGAAGGAAATACTCCAAAAGAGGTGCAAGAAGTGTTGAATGAAATGGAGATGATTATTGATATTGATGACACACTCCGCTATAAAGCAATCAATTGGTTGATTGACAATCCAAACAAAATAGCGATTCTCAAAGCTCTTCCGTTGAGTGAGAAAAAGAAGTATCTAATGGCTTCTATGTTTTGA

Protein sequence

>Msa1079590

MNSSLVYARGLGRKTKGKRKMEDSNIWVKKEDARAYFTWNLDMERVLAEALRDQRSLGRQTNGIWKTEAYKAAADVLSTHFNVQLIGENVKNRVKLWRRWYGIVNDILSQNGFGWDGTNCMITVEDENAWNEYVKSHEEAKRFRFKIILNWNDIVDICAKDKGGGIQVERAVNVDDVTSKDANVDEDEEGSNEYIDLEKPSSATKKKVQCTCANKGRDKEGMIDSMREVAEILKDFVQISKKRMEGNTPKEVQEVLNEMEMIIDIDDTLRYKAINWLIDNPNKIAILKALPLSEKKKYLMASMF*