Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0941170 | XP_013451291.1 | 94.795 | 634 | 32 | 1 | 1 | 633 | 1 | 634 | 0.0 | 1199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0941170 | sp|Q96GN5|CDA7L_HUMAN | 47.059 | 119 | 58 | 3 | 40 | 156 | 339 | 454 | 1.60e-25 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0941170 | A0A072U7K4 | 94.795 | 634 | 32 | 1 | 1 | 633 | 1 | 634 | 0.0 | 1199 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0941170 | TR | DDT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa0941170 | 0.807815 | 4.202822e-50 | -8.615850e-47 |
| Msa0030370 | Msa0941170 | 0.809149 | 2.182760e-50 | -8.615850e-47 |
| Msa0041850 | Msa0941170 | 0.818266 | 2.144168e-52 | -8.615850e-47 |
| Msa0081980 | Msa0941170 | 0.807793 | 4.248929e-50 | -8.615850e-47 |
| Msa0094780 | Msa0941170 | 0.809725 | 1.641981e-50 | -8.615850e-47 |
| Msa0624900 | Msa0941170 | 0.838277 | 3.164178e-57 | -8.615850e-47 |
| Msa0658640 | Msa0941170 | 0.821584 | 3.736679e-53 | -8.615850e-47 |
| Msa0703600 | Msa0941170 | 0.808031 | 3.781677e-50 | -8.615850e-47 |
| Msa0709200 | Msa0941170 | 0.810782 | 9.714076e-51 | -8.615850e-47 |
| Msa0709440 | Msa0941170 | 0.823643 | 1.240431e-53 | -8.615850e-47 |
| Msa0730930 | Msa0941170 | 0.804631 | 1.968987e-49 | -8.615850e-47 |
| Msa0777750 | Msa0941170 | 0.826414 | 2.749433e-54 | -8.615850e-47 |
| Msa0795870 | Msa0941170 | 0.822500 | 2.292037e-53 | -8.615850e-47 |
| Msa0833650 | Msa0941170 | 0.818167 | 2.258160e-52 | -8.615850e-47 |
| Msa0179130 | Msa0941170 | 0.813403 | 2.605837e-51 | -8.615850e-47 |
| Msa0190110 | Msa0941170 | 0.800594 | 1.339160e-48 | -8.615850e-47 |
| Msa0213030 | Msa0941170 | 0.801134 | 1.038940e-48 | -8.615850e-47 |
| Msa0225480 | Msa0941170 | 0.803245 | 3.822912e-49 | -8.615850e-47 |
| Msa0481890 | Msa0941170 | 0.822939 | 1.811130e-53 | -8.615850e-47 |
| Msa0298470 | Msa0941170 | 0.810546 | 1.092414e-50 | -8.615850e-47 |
| Msa0300860 | Msa0941170 | 0.803647 | 3.155412e-49 | -8.615850e-47 |
| Msa0310850 | Msa0941170 | 0.806202 | 9.224737e-50 | -8.615850e-47 |
| Msa0330380 | Msa0941170 | 0.812539 | 4.030276e-51 | -8.615850e-47 |
| Msa0361910 | Msa0941170 | 0.812984 | 3.220318e-51 | -8.615850e-47 |
| Msa0483100 | Msa0941170 | 0.815646 | 8.309678e-52 | -8.615850e-47 |
| Msa0534720 | Msa0941170 | 0.802226 | 6.204241e-49 | -8.615850e-47 |
| Msa0567170 | Msa0941170 | 0.807757 | 4.324665e-50 | -8.615850e-47 |
| Msa0573850 | Msa0941170 | 0.802214 | 6.237475e-49 | -8.615850e-47 |
| Msa0580370 | Msa0941170 | 0.813715 | 2.224839e-51 | -8.615850e-47 |
| Msa0876040 | Msa0941170 | 0.878190 | 3.431707e-69 | -8.615850e-47 |
| Msa0941170 | Msa0978300 | 0.842682 | 2.227979e-58 | -8.615850e-47 |
| Msa0941170 | Msa1084530 | 0.810251 | 1.264897e-50 | -8.615850e-47 |
| Msa0941170 | Msa1125820 | 0.811163 | 8.030811e-51 | -8.615850e-47 |
| Msa0941170 | Msa1125990 | 0.814518 | 1.479244e-51 | -8.615850e-47 |
| Msa0941170 | Msa1132840 | 0.815240 | 1.022958e-51 | -8.615850e-47 |
| Msa0941170 | Msa1171290 | 0.823974 | 1.037292e-53 | -8.615850e-47 |
| Msa0941170 | Msa1190590 | 0.801780 | 7.660439e-49 | -8.615850e-47 |
| Msa0941170 | Msa1192570 | 0.810549 | 1.090914e-50 | -8.615850e-47 |
| Msa0941170 | Msa1200890 | 0.802696 | 4.964451e-49 | -8.615850e-47 |
| Msa0941170 | Msa1215870 | 0.814718 | 1.335617e-51 | -8.615850e-47 |
| Msa0941170 | Msa1226520 | 0.816009 | 6.896448e-52 | -8.615850e-47 |
| Msa0941170 | Msa1228200 | 0.808316 | 3.288983e-50 | -8.615850e-47 |
| Msa0941170 | Msa1253550 | 0.806988 | 6.293718e-50 | -8.615850e-47 |
| Msa0941170 | Msa1292590 | 0.822712 | 2.045322e-53 | -8.615850e-47 |
| Msa0941170 | Msa1320670 | 0.816797 | 4.595261e-52 | -8.615850e-47 |
| Msa0941170 | Msa1440880 | 0.830787 | 2.412199e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0941170 | MtrunA17_Chr6g0457161 | 94.795 | 634 | 32 | 1 | 1 | 633 | 1 | 634 | 0.0 | 1199 |
| Msa0941170 | MtrunA17_Chr6g0457221 | 73.060 | 464 | 94 | 1 | 170 | 633 | 302 | 734 | 0.0 | 655 |
| Msa0941170 | MtrunA17_Chr6g0457221 | 77.512 | 209 | 39 | 2 | 1 | 209 | 1 | 201 | 6.76e-101 | 323 |
| Msa0941170 | MtrunA17_Chr5g0402951 | 41.912 | 136 | 74 | 2 | 37 | 170 | 148 | 280 | 3.77e-25 | 107 |
| Msa0941170 | MtrunA17_Chr5g0402961 | 42.857 | 119 | 59 | 2 | 37 | 152 | 150 | 262 | 1.02e-22 | 101 |
| Msa0941170 | MtrunA17_Chr4g0045521 | 36.029 | 136 | 70 | 4 | 42 | 172 | 171 | 294 | 1.04e-18 | 87.8 |
| Msa0941170 | MtrunA17_Chr6g0479091 | 38.129 | 139 | 59 | 5 | 30 | 145 | 156 | 290 | 2.56e-16 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0941170 | AT5G38690.2 | 40.523 | 612 | 304 | 13 | 18 | 624 | 1 | 557 | 3.06e-126 | 385 |
| Msa0941170 | AT5G38690.1 | 40.523 | 612 | 304 | 13 | 18 | 624 | 1 | 557 | 3.06e-126 | 385 |
| Msa0941170 | AT1G67270.1 | 40.256 | 313 | 176 | 6 | 310 | 616 | 176 | 483 | 2.73e-51 | 185 |
| Msa0941170 | AT1G67270.1 | 63.248 | 117 | 43 | 0 | 29 | 145 | 2 | 118 | 2.01e-44 | 166 |
| Msa0941170 | AT1G67780.2 | 37.771 | 323 | 193 | 5 | 304 | 624 | 182 | 498 | 4.27e-50 | 182 |
| Msa0941170 | AT1G67780.2 | 66.667 | 120 | 40 | 0 | 26 | 145 | 7 | 126 | 1.05e-49 | 181 |
| Msa0941170 | AT1G67780.1 | 37.771 | 323 | 193 | 5 | 304 | 624 | 182 | 498 | 4.27e-50 | 182 |
| Msa0941170 | AT1G67780.1 | 66.667 | 120 | 40 | 0 | 26 | 145 | 7 | 126 | 1.05e-49 | 181 |
| Msa0941170 | AT2G23530.1 | 46.552 | 116 | 51 | 3 | 42 | 152 | 153 | 262 | 1.74e-23 | 105 |
| Msa0941170 | AT4G37110.3 | 41.129 | 124 | 58 | 3 | 42 | 156 | 76 | 193 | 2.13e-20 | 93.2 |
| Msa0941170 | AT4G37110.4 | 41.129 | 124 | 58 | 3 | 42 | 156 | 76 | 193 | 2.13e-20 | 93.2 |
| Msa0941170 | AT4G37110.2 | 41.129 | 124 | 58 | 3 | 42 | 156 | 158 | 275 | 8.25e-20 | 92.8 |
| Msa0941170 | AT4G37110.1 | 41.129 | 124 | 58 | 3 | 42 | 156 | 171 | 288 | 8.79e-20 | 92.8 |
Find 136 sgRNAs with CRISPR-Local
Find 353 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTTCAAAAGAAGCTAATT+TGG | 0.197118 | 6_3:-14664002 | Msa0941170:CDS |
| AATCTGCCAGGGATAATTTA+AGG | 0.199275 | 6_3:-14660724 | Msa0941170:three_prime_UTR |
| AGGGAATGTTTAAGTTATTT+TGG | 0.209773 | 6_3:+14666849 | None:intergenic |
| CAAATCTTCAGAAGCCTTCT+TGG | 0.214150 | 6_3:+14664048 | None:intergenic |
| AAACTCAAGGTCTAATATTT+TGG | 0.223991 | 6_3:+14663333 | None:intergenic |
| CAAGAAGGCTTCTGAAGATT+TGG | 0.251002 | 6_3:-14664047 | Msa0941170:CDS |
| ATGTGGAAACAAAGGTTTAA+AGG | 0.266600 | 6_3:-14663752 | Msa0941170:CDS |
| AGAATTACCTTGTAACAAAA+AGG | 0.268700 | 6_3:+14660997 | None:intergenic |
| GCAGATTACTAGTATGTAAT+TGG | 0.303913 | 6_3:+14660740 | None:intergenic |
| TTTGCTACTACCAACAATAA+TGG | 0.312090 | 6_3:-14666747 | Msa0941170:exon |
| AAATTCATGGTTGAAAGTTC+TGG | 0.316231 | 6_3:-14662508 | Msa0941170:CDS |
| CCGGAGGATTGGCTCAATAA+AGG | 0.324369 | 6_3:-14662444 | Msa0941170:CDS |
| TGTCCTAAGTTCCAGTGTTT+TGG | 0.324583 | 6_3:-14660682 | Msa0941170:three_prime_UTR |
| AATGAAGCGGGAAAAGTTAA+AGG | 0.325185 | 6_3:-14663707 | Msa0941170:CDS |
| CTTTATCTGTGATGAAGCTT+TGG | 0.335217 | 6_3:-14662370 | Msa0941170:CDS |
| TCAAAGTCAACAGCTTGATT+TGG | 0.342350 | 6_3:+14662698 | None:intergenic |
| GCCACAAATGCCTCTTGAAC+AGG | 0.344140 | 6_3:-14664462 | Msa0941170:intron |
| TCACGCGGTGTTCGTGTTAT+CGG | 0.347596 | 6_3:-14666626 | Msa0941170:CDS |
| CAATGCATTCCCAACATCTT+CGG | 0.349577 | 6_3:+14663306 | None:intergenic |
| TCACCAAAACACTGGAACTT+AGG | 0.357087 | 6_3:+14660679 | None:intergenic |
| TTTCTCTCATGCATTAGATT+AGG | 0.358747 | 6_3:+14663481 | None:intergenic |
| TGATGATCAAAATGCAATAT+TGG | 0.363141 | 6_3:-14662176 | Msa0941170:CDS |
| TTTGATGAATTCGGGAAAAT+GGG | 0.366055 | 6_3:+14666794 | None:intergenic |
| ATAACAGTGGTAATGCATTC+TGG | 0.369692 | 6_3:-14661048 | Msa0941170:CDS |
| GTTCATTCGGCCAAGGCATC+TGG | 0.374492 | 6_3:-14664097 | Msa0941170:CDS |
| TTAGAATTCTGCAGAGTGTT+TGG | 0.375943 | 6_3:-14663277 | Msa0941170:CDS |
| GAGGATTTGATTACTGAATC+TGG | 0.390946 | 6_3:-14662486 | Msa0941170:CDS |
| ACATTTCCTCTAGGAGAGAT+TGG | 0.391866 | 6_3:-14660804 | Msa0941170:CDS |
| GCAAAAGCTGCTATATCAAA+TGG | 0.394679 | 6_3:-14661970 | Msa0941170:CDS |
| CGAATCTATGATTCTGAAAA+CGG | 0.398385 | 6_3:-14666599 | Msa0941170:CDS |
| TGAATTCGGGAAAATGGGTT+TGG | 0.402382 | 6_3:+14666799 | None:intergenic |
| AACTAAACTGAAGTTAGCTT+TGG | 0.410623 | 6_3:+14660778 | None:intergenic |
| CATTAGCGGATATAATGATT+TGG | 0.411027 | 6_3:-14662421 | Msa0941170:CDS |
| AAAAGAAGCTAATTTGGATA+AGG | 0.413397 | 6_3:-14663996 | Msa0941170:intron |
| AAGTCTTAAGCAAAAGTTGC+AGG | 0.414891 | 6_3:-14662001 | Msa0941170:CDS |
| TTTATCTGTGATGAAGCTTT+GGG | 0.420372 | 6_3:-14662369 | Msa0941170:CDS |
| TGGTCAGATGGATGCTCCTA+AGG | 0.425400 | 6_3:-14663533 | Msa0941170:CDS |
| GAGAATTGAGCCTGAGTACT+TGG | 0.429535 | 6_3:-14661071 | Msa0941170:CDS |
| TACTGGTATACTAGTTCATT+CGG | 0.430354 | 6_3:-14664110 | Msa0941170:CDS |
| CAGAGTCATGGAATGATTCC+TGG | 0.431809 | 6_3:-14663553 | Msa0941170:CDS |
| AATGAAAGCAGCAAAATCTA+AGG | 0.435911 | 6_3:-14662146 | Msa0941170:CDS |
| AGGTAGATCTATTGAATGAT+TGG | 0.443425 | 6_3:-14664295 | Msa0941170:CDS |
| ACACAAGGCTTCCCACCTCT+TGG | 0.444496 | 6_3:+14664496 | None:intergenic |
| AGTTTGCACCCGAAGATGTT+GGG | 0.446171 | 6_3:-14663315 | Msa0941170:CDS |
| ACCTGTTCAAGAGGCATTTG+TGG | 0.447431 | 6_3:+14664461 | None:intergenic |
| TTGCAGATTCCTTTGCACTT+TGG | 0.454542 | 6_3:+14664266 | None:intergenic |
| GTGGGAAGCCTTGTGTCATC+AGG | 0.455659 | 6_3:-14664489 | Msa0941170:CDS |
| GAAGAAATTCCTTTGCCCCT+TGG | 0.459527 | 6_3:-14663367 | Msa0941170:CDS |
| AATGCATTCCCAACATCTTC+GGG | 0.470221 | 6_3:+14663307 | None:intergenic |
| TTCTCACTGCATCACAGCAT+TGG | 0.484712 | 6_3:+14661089 | None:intergenic |
| TGAATTTAGATATGGGGAAA+AGG | 0.485817 | 6_3:-14664324 | Msa0941170:intron |
| ATCTAAGGTCGCTGAAGCTA+AGG | 0.488219 | 6_3:-14662131 | Msa0941170:CDS |
| ATATGGGGAAAAGGCGGAAG+AGG | 0.489139 | 6_3:-14664315 | Msa0941170:CDS |
| TTGAAAACAAGAAATTGAAA+AGG | 0.492752 | 6_3:-14663651 | Msa0941170:CDS |
| TCATTTGCAGAACAAGCCTT+AGG | 0.494943 | 6_3:+14663517 | None:intergenic |
| AAGAAATGCAGATGCTGATA+CGG | 0.495332 | 6_3:-14663590 | Msa0941170:CDS |
| TTTATATCTTCAGGAAGCTA+AGG | 0.495609 | 6_3:-14662207 | Msa0941170:intron |
| AAGTTAAAGGAAATATCTAA+TGG | 0.496876 | 6_3:-14663694 | Msa0941170:CDS |
| GGTCGCTGAAGCTAAGGAAA+AGG | 0.499427 | 6_3:-14662125 | Msa0941170:intron |
| ATCTCAGTGCCAAGGGGCAA+AGG | 0.499850 | 6_3:+14663358 | None:intergenic |
| ATGCATTAGATTAGGAATGA+AGG | 0.503395 | 6_3:+14663489 | None:intergenic |
| GAATCGATTTCCATTATTGT+TGG | 0.505572 | 6_3:+14666737 | None:intergenic |
| GAAACTCCGTTGGAAAGTTT+AGG | 0.513228 | 6_3:+14663628 | None:intergenic |
| GAGAAGGAAAACTCATTATG+TGG | 0.515037 | 6_3:-14663769 | Msa0941170:CDS |
| GTCAGCAATGCTTACCAAGA+AGG | 0.517036 | 6_3:-14664062 | Msa0941170:CDS |
| CTTCAACAGCATGTTCATCA+TGG | 0.519641 | 6_3:+14660881 | None:intergenic |
| CAAAAGCTGCTATATCAAAT+GGG | 0.521186 | 6_3:-14661969 | Msa0941170:CDS |
| ACTGAGTTGCTTGAGGCAAA+AGG | 0.521553 | 6_3:-14661877 | Msa0941170:CDS |
| GCAAAAGTTGCAGGATGAGA+TGG | 0.522189 | 6_3:-14661992 | Msa0941170:CDS |
| TTAAAACCTTAAATTATCCC+TGG | 0.523904 | 6_3:+14660718 | None:intergenic |
| CAGGCTCTCGATCTTAAGAA+AGG | 0.525138 | 6_3:-14662799 | Msa0941170:CDS |
| CATCATATTCTGAAATTGAG+AGG | 0.525339 | 6_3:+14661941 | None:intergenic |
| TATAGCATTTGTTTGAGACT+TGG | 0.529038 | 6_3:+14663414 | None:intergenic |
| TTACATACTAGTAATCTGCC+AGG | 0.530461 | 6_3:-14660736 | Msa0941170:three_prime_UTR |
| CCTTTATTGAGCCAATCCTC+CGG | 0.535652 | 6_3:+14662444 | None:intergenic |
| TGTCTTTATCACCAAAACAC+TGG | 0.536009 | 6_3:+14660671 | None:intergenic |
| AGAAAACAGAGAAAATGAAG+CGG | 0.538273 | 6_3:-14663720 | Msa0941170:CDS |
| AGGTCTTCATCCTTAACTGC+TGG | 0.539184 | 6_3:-14662540 | Msa0941170:CDS |
| GTTGTTGTTGTTGATGCGAA+TGG | 0.543521 | 6_3:-14666677 | Msa0941170:CDS |
| AACTCATTATGTGGAAACAA+AGG | 0.544075 | 6_3:-14663760 | Msa0941170:CDS |
| AGAGTTAAAACCAGATGCCT+TGG | 0.544879 | 6_3:+14664087 | None:intergenic |
| GAGTTTGCACCCGAAGATGT+TGG | 0.546808 | 6_3:-14663316 | Msa0941170:CDS |
| TCACTAAGTACATTTCCTCT+AGG | 0.548858 | 6_3:-14660813 | Msa0941170:CDS |
| TTGTGTTGAATTTAGATATG+GGG | 0.549696 | 6_3:-14664330 | Msa0941170:intron |
| TGGAATGATTCCTGGTCAGA+TGG | 0.550104 | 6_3:-14663545 | Msa0941170:CDS |
| AAAAGAGGTCATCAACCTAC+TGG | 0.550909 | 6_3:-14664127 | Msa0941170:CDS |
| TCATCCTTAACTGCTGGCAA+TGG | 0.553708 | 6_3:-14662534 | Msa0941170:CDS |
| CATCTTCGGGTGCAAACTCA+AGG | 0.554272 | 6_3:+14663320 | None:intergenic |
| TTTGGTCATCTCAGTGCCAA+GGG | 0.556107 | 6_3:+14663351 | None:intergenic |
| AGTTCCCACTTTGTGTGATG+TGG | 0.556902 | 6_3:+14666887 | None:intergenic |
| GATCTTAAGAAAGGAGAAGC+AGG | 0.557446 | 6_3:-14662790 | Msa0941170:CDS |
| CCCACTTTGTGTGATGTGGC+GGG | 0.557943 | 6_3:+14666891 | None:intergenic |
| GAAAACAGAGAAAATGAAGC+GGG | 0.561741 | 6_3:-14663719 | Msa0941170:CDS |
| TCCCACTTTGTGTGATGTGG+CGG | 0.562177 | 6_3:+14666890 | None:intergenic |
| TCTATCGTGGGAACCTGAGA+AGG | 0.565754 | 6_3:-14663785 | Msa0941170:CDS |
| CATCACAGATAAAGTTCAGA+AGG | 0.568147 | 6_3:+14662379 | None:intergenic |
| TTCATGGTTGAAAGTTCTGG+AGG | 0.569469 | 6_3:-14662505 | Msa0941170:CDS |
| ACAAAAGTAGAGCAGAGTCA+TGG | 0.571075 | 6_3:-14663565 | Msa0941170:CDS |
| TGGAGCTGTGCAGAAGGATG+AGG | 0.572338 | 6_3:-14660836 | Msa0941170:CDS |
| CTTTCCAACGGAGTTTCCGA+TGG | 0.577921 | 6_3:-14663622 | Msa0941170:CDS |
| TGGCTCAATAAAGGCATTAG+CGG | 0.579791 | 6_3:-14662435 | Msa0941170:CDS |
| TCCCGCCACATCACACAAAG+TGG | 0.583566 | 6_3:-14666892 | Msa0941170:five_prime_UTR |
| ATCACCATCGGAAACTCCGT+TGG | 0.585594 | 6_3:+14663618 | None:intergenic |
| TGTTTATGGAGCTGTGCAGA+AGG | 0.591422 | 6_3:-14660842 | Msa0941170:CDS |
| AGCTTGTAGTGGATCTATCG+TGG | 0.595872 | 6_3:-14663798 | Msa0941170:CDS |
| TTTGTAAGAATCCAAGAGGT+GGG | 0.597972 | 6_3:-14664507 | Msa0941170:CDS |
| TTAGGAGCATCCATCTGACC+AGG | 0.598633 | 6_3:+14663535 | None:intergenic |
| GGGAACCAAACCTGTTCAAG+AGG | 0.602392 | 6_3:+14664452 | None:intergenic |
| GCGACGTGGACAAAATGCCT+TGG | 0.606782 | 6_3:-14662731 | Msa0941170:CDS |
| TATACTACAGGAGCTTGTAG+TGG | 0.607942 | 6_3:-14663809 | Msa0941170:intron |
| TGGAATTGTCCAAAGTGCAA+AGG | 0.608508 | 6_3:-14664275 | Msa0941170:CDS |
| ATAGCTGATGGTGAAAATGC+TGG | 0.614269 | 6_3:-14663439 | Msa0941170:CDS |
| GCTTGTAGTGGATCTATCGT+GGG | 0.618962 | 6_3:-14663797 | Msa0941170:CDS |
| ACGTGGACAAAATGCCTTGG+TGG | 0.621055 | 6_3:-14662728 | Msa0941170:CDS |
| GCTAAAACTGAAAGAGAGTG+AGG | 0.622038 | 6_3:-14666705 | Msa0941170:CDS |
| AGCTCGTACTGAGTTGCTTG+AGG | 0.622099 | 6_3:-14661884 | Msa0941170:CDS |
| CAGCTATCACAACAGTACCT+TGG | 0.622207 | 6_3:+14663455 | None:intergenic |
| GTTTGTAAGAATCCAAGAGG+TGG | 0.622289 | 6_3:-14664508 | Msa0941170:CDS |
| AAACGGAAAATCTTGTCACC+AGG | 0.623627 | 6_3:-14666582 | Msa0941170:intron |
| TGGCAGAACCTGATGACACA+AGG | 0.625463 | 6_3:+14664481 | None:intergenic |
| AAAAGGCCTAAACTTTCCAA+CGG | 0.628203 | 6_3:-14663634 | Msa0941170:CDS |
| ATTTAGATATGGGGAAAAGG+CGG | 0.637070 | 6_3:-14664321 | Msa0941170:intron |
| TATACTAGTTCATTCGGCCA+AGG | 0.638076 | 6_3:-14664104 | Msa0941170:CDS |
| CCACTGTTATCCAAGTACTC+AGG | 0.639484 | 6_3:+14661061 | None:intergenic |
| CCCGCCACATCACACAAAGT+GGG | 0.640985 | 6_3:-14666891 | Msa0941170:five_prime_UTR |
| TACATACTAGTAATCTGCCA+GGG | 0.650961 | 6_3:-14660735 | Msa0941170:three_prime_UTR |
| ATTCTGCAGAGTGTTTGGAA+AGG | 0.667054 | 6_3:-14663272 | Msa0941170:intron |
| GGTACTGTTGTGATAGCTGA+TGG | 0.670403 | 6_3:-14663451 | Msa0941170:CDS |
| TGGTAACCAATCTCTCCTAG+AGG | 0.673606 | 6_3:+14660798 | None:intergenic |
| ATGCATGAGAGAAATTGCCA+AGG | 0.684406 | 6_3:-14663472 | Msa0941170:CDS |
| GCTGTTTGTAAGAATCCAAG+AGG | 0.685376 | 6_3:-14664511 | Msa0941170:CDS |
| GAATGAACTAGTATACCAGT+AGG | 0.685417 | 6_3:+14664112 | None:intergenic |
| GATTTGGAACTCAACCACCA+AGG | 0.685839 | 6_3:+14662714 | None:intergenic |
| CGTAAGCAAAATTTGCGACG+TGG | 0.687278 | 6_3:-14662745 | Msa0941170:CDS |
| CCTGAGTACTTGGATAACAG+TGG | 0.691208 | 6_3:-14661061 | Msa0941170:CDS |
| TTGGTCATCTCAGTGCCAAG+GGG | 0.704568 | 6_3:+14663352 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTTCATATTAACTT+CGG | + | chr6_3:14662713-14662732 | None:intergenic | 10.0% |
| !! | TGAAAAATAAAAAATTTCTT+TGG | - | chr6_3:14662722-14662741 | Msa0941170:CDS | 10.0% |
| !!! | ATTTGTTATTTCATTTTTAA+AGG | - | chr6_3:14664950-14664969 | Msa0941170:intron | 10.0% |
| !!! | TTTGTTATTTCATTTTTAAA+GGG | - | chr6_3:14664951-14664970 | Msa0941170:intron | 10.0% |
| !!! | TTTAATTTGTATAGTATATT+TGG | - | chr6_3:14664983-14665002 | Msa0941170:intron | 10.0% |
| !! | GAAGAATAATAATAAAAAAA+AGG | + | chr6_3:14665315-14665334 | None:intergenic | 10.0% |
| !!! | AATTTTCGAAAATGAAATAT+CGG | + | chr6_3:14661144-14661163 | None:intergenic | 15.0% |
| !!! | TCATTTTCGAAAATTATTAT+TGG | - | chr6_3:14661149-14661168 | Msa0941170:intron | 15.0% |
| !!! | ATTTTCTGAAGAAAAAAAAT+TGG | - | chr6_3:14661353-14661372 | Msa0941170:intron | 15.0% |
| !!! | TCATTTTCTCAAATTATTAT+TGG | + | chr6_3:14661543-14661562 | None:intergenic | 15.0% |
| !! | AAATTAAGATCAAATAAAGA+TGG | - | chr6_3:14662410-14662429 | Msa0941170:CDS | 15.0% |
| !! | AATTAAGATCAAATAAAGAT+GGG | - | chr6_3:14662411-14662430 | Msa0941170:CDS | 15.0% |
| !!! | TTATTTTTCATATTAACTTC+GGG | + | chr6_3:14662712-14662731 | None:intergenic | 15.0% |
| !! | AAAACCAAATTAAAAAAAGA+GGG | + | chr6_3:14663150-14663169 | None:intergenic | 15.0% |
| !! | TAAAACCAAATTAAAAAAAG+AGG | + | chr6_3:14663151-14663170 | None:intergenic | 15.0% |
| !!! | TTGAAAATATGTTTTGAATT+TGG | - | chr6_3:14663362-14663381 | Msa0941170:CDS | 15.0% |
| !!! | TTTGTTTTCTTTTTAAGTTT+TGG | - | chr6_3:14664486-14664505 | Msa0941170:CDS | 15.0% |
| !! | CTAACTTAACTTATTATTAT+TGG | - | chr6_3:14664525-14664544 | Msa0941170:CDS | 15.0% |
| !!! | TAATTCTAAGGATTAATTTT+TGG | + | chr6_3:14664624-14664643 | None:intergenic | 15.0% |
| !! | TAAACTTCAGTATTTATAAT+TGG | - | chr6_3:14665899-14665918 | Msa0941170:intron | 15.0% |
| !! | AAACTTCAGTATTTATAATT+GGG | - | chr6_3:14665900-14665919 | Msa0941170:intron | 15.0% |
| !! | GAAAAATATTAATATCATTC+AGG | + | chr6_3:14665938-14665957 | None:intergenic | 15.0% |
| !! | ACAATAATAATCTGAGAAAA+TGG | + | chr6_3:14661896-14661915 | None:intergenic | 20.0% |
| !! | TGTAATGTAATTGTTTAATG+TGG | - | chr6_3:14661974-14661993 | Msa0941170:CDS | 20.0% |
| !! | TTTGATTAATGTGCTAAAAT+TGG | - | chr6_3:14662167-14662186 | Msa0941170:CDS | 20.0% |
| !!! | TCGATTTTTAACATTAACTT+GGG | + | chr6_3:14662268-14662287 | None:intergenic | 20.0% |
| !!! | TTCGATTTTTAACATTAACT+TGG | + | chr6_3:14662269-14662288 | None:intergenic | 20.0% |
| !! | AATCGAAAAAAATCATTTGA+TGG | - | chr6_3:14662282-14662301 | Msa0941170:intron | 20.0% |
| !! | ATCGAAAAAAATCATTTGAT+GGG | - | chr6_3:14662283-14662302 | Msa0941170:intron | 20.0% |
| !! | GATAAATCATTCACAAAAAT+AGG | + | chr6_3:14662562-14662581 | None:intergenic | 20.0% |
| !! | GATTATGGAGTTTAATTAAT+TGG | - | chr6_3:14662603-14662622 | Msa0941170:intron | 20.0% |
| !! | TTTAATTAATTGGCTGAAAT+TGG | - | chr6_3:14662613-14662632 | Msa0941170:intron | 20.0% |
| !!! | GTTTCTTGTTTTATGATTTT+TGG | - | chr6_3:14662785-14662804 | Msa0941170:CDS | 20.0% |
| !! | AAACCAAATTAAAAAAAGAG+GGG | + | chr6_3:14663149-14663168 | None:intergenic | 20.0% |
| !!! | TTTTGTGTTGAATTTAGATA+TGG | - | chr6_3:14663246-14663265 | Msa0941170:intron | 20.0% |
| !! | TTTGTGTTGAATTTAGATAT+GGG | - | chr6_3:14663247-14663266 | Msa0941170:intron | 20.0% |
| !! | AAAGATAAATTTGTGTTTGA+TGG | - | chr6_3:14663643-14663662 | Msa0941170:CDS | 20.0% |
| !!! | GATTTTCATAGTTGTTTTTA+TGG | - | chr6_3:14663727-14663746 | Msa0941170:CDS | 20.0% |
| !! | AAGTTAAAGGAAATATCTAA+TGG | - | chr6_3:14663884-14663903 | Msa0941170:intron | 20.0% |
| !! | TTGAAAACAAGAAATTGAAA+AGG | - | chr6_3:14663927-14663946 | Msa0941170:intron | 20.0% |
| !!! | TGAATTTTCTCTTATATCTT+TGG | - | chr6_3:14664342-14664361 | Msa0941170:intron | 20.0% |
| !! | GATCAAATTAATAATAGTCA+TGG | - | chr6_3:14664555-14664574 | Msa0941170:intron | 20.0% |
| !!! | TTGGAATAAACTGTTATTTT+TGG | - | chr6_3:14665002-14665021 | Msa0941170:intron | 20.0% |
| !! | TCATATTCTTCATAAGAAAT+TGG | + | chr6_3:14666284-14666303 | None:intergenic | 20.0% |
| !! | TGGAAATTAAAAAGCTATAA+TGG | - | chr6_3:14666550-14666569 | Msa0941170:intron | 20.0% |
| !!! | AGGGAATGTTTAAGTTATTT+TGG | + | chr6_3:14660732-14660751 | None:intergenic | 25.0% |
| !!! | TTTTTTTGGAGTGAAAAATG+TGG | + | chr6_3:14660759-14660778 | None:intergenic | 25.0% |
| !!! | AAACGAGATTTTGATGAATT+CGG | + | chr6_3:14660796-14660815 | None:intergenic | 25.0% |
| ! | ATAGATCTTAACTCAAGAAT+CGG | + | chr6_3:14661449-14661468 | None:intergenic | 25.0% |
| ! | ATAATGTATCAATATCGTGT+CGG | - | chr6_3:14661567-14661586 | Msa0941170:intron | 25.0% |
| ! | ATCTGAGAAAATGGAATAAT+TGG | + | chr6_3:14661887-14661906 | None:intergenic | 25.0% |
| ! | ATTAAACACAAATACAGACA+GGG | + | chr6_3:14661935-14661954 | None:intergenic | 25.0% |
| ! | TTGTGAATGTGATTATTGAA+AGG | - | chr6_3:14662105-14662124 | Msa0941170:intron | 25.0% |
| ! | ACATAAATGGATGTTGTAAT+TGG | - | chr6_3:14662212-14662231 | Msa0941170:intron | 25.0% |
| !!! | CGATTTTTAACATTAACTTG+GGG | + | chr6_3:14662267-14662286 | None:intergenic | 25.0% |
| ! | GTAGATAATGTATTGAAACA+AGG | - | chr6_3:14662382-14662401 | Msa0941170:CDS | 25.0% |
| ! | AGATATGAACTCAAAGAATA+CGG | - | chr6_3:14662463-14662482 | Msa0941170:CDS | 25.0% |
| ! | TTTACTTGTGAATCTGATTA+TGG | - | chr6_3:14662588-14662607 | Msa0941170:intron | 25.0% |
| ! | AAAATGTGTACTTTGTTGAT+TGG | - | chr6_3:14662905-14662924 | Msa0941170:intron | 25.0% |
| ! | TTGTGTTGAATTTAGATATG+GGG | - | chr6_3:14663248-14663267 | Msa0941170:intron | 25.0% |
| ! | ATACACAAAATGGTACAAAA+TGG | + | chr6_3:14663399-14663418 | None:intergenic | 25.0% |
| !! | TTTTGTACCATTTTGTGTAT+TGG | - | chr6_3:14663399-14663418 | Msa0941170:CDS | 25.0% |
| ! | AAAAGAAGCTAATTTGGATA+AGG | - | chr6_3:14663582-14663601 | Msa0941170:CDS | 25.0% |
| !!! | TCATGTTTGTTATATACTAC+AGG | - | chr6_3:14663757-14663776 | Msa0941170:CDS | 25.0% |
| ! | TCTGAATGCTGAAAAAATTA+AGG | - | chr6_3:14664189-14664208 | Msa0941170:intron | 25.0% |
| !! | AAACTCAAGGTCTAATATTT+TGG | + | chr6_3:14664248-14664267 | None:intergenic | 25.0% |
| ! | TAAGAGAAAATTCAGCATAA+AGG | + | chr6_3:14664336-14664355 | None:intergenic | 25.0% |
| !!! | TTTTCTTTTTAAGTTTTGGC+TGG | - | chr6_3:14664490-14664509 | Msa0941170:CDS | 25.0% |
| ! | CTTGATATAGCAATTATGAA+CGG | + | chr6_3:14664731-14664750 | None:intergenic | 25.0% |
| ! | GTAAGTATCTCAATTTAAAC+TGG | - | chr6_3:14665238-14665257 | Msa0941170:intron | 25.0% |
| ! | AAACAATGAAGTAACAAGAA+AGG | + | chr6_3:14665278-14665297 | None:intergenic | 25.0% |
| ! | ACATTAAACAAGATAAAGAC+AGG | + | chr6_3:14665337-14665356 | None:intergenic | 25.0% |
| !! | TGTCTTTATCTTGTTTAATG+TGG | - | chr6_3:14665336-14665355 | Msa0941170:intron | 25.0% |
| !! | TTTATCTTGTTTAATGTGGT+TGG | - | chr6_3:14665340-14665359 | Msa0941170:intron | 25.0% |
| ! | TGATGATCAAAATGCAATAT+TGG | - | chr6_3:14665402-14665421 | Msa0941170:intron | 25.0% |
| !!! | GTTTTTTTATGACAACACTT+TGG | - | chr6_3:14665857-14665876 | Msa0941170:intron | 25.0% |
| ! | GAAAGTAAATGAAATGTTGT+GGG | + | chr6_3:14665977-14665996 | None:intergenic | 25.0% |
| ! | AGAAAGTAAATGAAATGTTG+TGG | + | chr6_3:14665978-14665997 | None:intergenic | 25.0% |
| !!! | TCCAATTTGTTAAATTCAGT+TGG | - | chr6_3:14666248-14666267 | Msa0941170:intron | 25.0% |
| ! | ACCAACTGAATTTAACAAAT+TGG | + | chr6_3:14666252-14666271 | None:intergenic | 25.0% |
| ! | ATAGAGAACATGCAAATATA+TGG | - | chr6_3:14666386-14666405 | Msa0941170:intron | 25.0% |
| !!! | TTTTTTCCTTATAACATCGT+AGG | - | chr6_3:14666463-14666482 | Msa0941170:intron | 25.0% |
| !! | TTTTTCCTTATAACATCGTA+GGG | - | chr6_3:14666464-14666483 | Msa0941170:intron | 25.0% |
| ! | AGAATTACCTTGTAACAAAA+AGG | + | chr6_3:14666584-14666603 | None:intergenic | 25.0% |
| !!! | GATGAAAAATGGTTTGTTTA+TGG | - | chr6_3:14666722-14666741 | Msa0941170:CDS | 25.0% |
| ! | TTAAAACCTTAAATTATCCC+TGG | + | chr6_3:14666863-14666882 | None:intergenic | 25.0% |
| !!! | GAAAATGGGTTTGGTTTTTT+TGG | + | chr6_3:14660773-14660792 | None:intergenic | 30.0% |
| TTTGATGAATTCGGGAAAAT+GGG | + | chr6_3:14660787-14660806 | None:intergenic | 30.0% | |
| ! | TTTTGATGAATTCGGGAAAA+TGG | + | chr6_3:14660788-14660807 | None:intergenic | 30.0% |
| !! | AACGAGATTTTGATGAATTC+GGG | + | chr6_3:14660795-14660814 | None:intergenic | 30.0% |
| TTTGCTACTACCAACAATAA+TGG | - | chr6_3:14660831-14660850 | Msa0941170:CDS | 30.0% | |
| ! | GAATCGATTTCCATTATTGT+TGG | + | chr6_3:14660844-14660863 | None:intergenic | 30.0% |
| ! | CGAATCTATGATTCTGAAAA+CGG | - | chr6_3:14660979-14660998 | Msa0941170:intron | 30.0% |
| AACGAAGAATCAAAGAAAGA+AGG | + | chr6_3:14661036-14661055 | None:intergenic | 30.0% | |
| GCACAAACATTTCTAATTGA+AGG | - | chr6_3:14661266-14661285 | Msa0941170:intron | 30.0% | |
| ! | CATATGTATTGATGTCAAGT+CGG | - | chr6_3:14661759-14661778 | Msa0941170:intron | 30.0% |
| TTAAACACAAATACAGACAG+GGG | + | chr6_3:14661934-14661953 | None:intergenic | 30.0% | |
| CATTAAACACAAATACAGAC+AGG | + | chr6_3:14661936-14661955 | None:intergenic | 30.0% | |
| GTCTGTATTTGTGTTTAATG+TGG | - | chr6_3:14661936-14661955 | Msa0941170:CDS | 30.0% | |
| !! | AAAATCATTTGATGGGTTGT+AGG | - | chr6_3:14662290-14662309 | Msa0941170:intron | 30.0% |
| !! | AAATCATTTGATGGGTTGTA+GGG | - | chr6_3:14662291-14662310 | Msa0941170:intron | 30.0% |
| GCAATAATGGTTGTTGTAAT+TGG | - | chr6_3:14662658-14662677 | Msa0941170:intron | 30.0% | |
| ATAATGTCTGAAGGTTTACT+CGG | - | chr6_3:14662759-14662778 | Msa0941170:CDS | 30.0% | |
| !!! | GTTTGTTTTATTCTGAGATG+TGG | - | chr6_3:14662813-14662832 | Msa0941170:intron | 30.0% |
| !! | ACTGGTCTTTGACTTATTAT+GGG | - | chr6_3:14662864-14662883 | Msa0941170:intron | 30.0% |
| AAATGTGTTAGCATCAAAAC+TGG | + | chr6_3:14662995-14663014 | None:intergenic | 30.0% | |
| TGCTAACACATTTGTTTACT+TGG | - | chr6_3:14663002-14663021 | Msa0941170:intron | 30.0% | |
| !!! | GTTCCCCTCTTTTTTTAATT+TGG | - | chr6_3:14663143-14663162 | Msa0941170:intron | 30.0% |
| TGAATTTAGATATGGGGAAA+AGG | - | chr6_3:14663254-14663273 | Msa0941170:intron | 30.0% | |
| AGGTAGATCTATTGAATGAT+TGG | - | chr6_3:14663283-14663302 | Msa0941170:CDS | 30.0% | |
| TTCAGAACCAATACACAAAA+TGG | + | chr6_3:14663409-14663428 | None:intergenic | 30.0% | |
| CAACATTGTAGGAAAAAAAG+AGG | - | chr6_3:14663436-14663455 | Msa0941170:CDS | 30.0% | |
| TACTGGTATACTAGTTCATT+CGG | - | chr6_3:14663468-14663487 | Msa0941170:CDS | 30.0% | |
| !! | TCCAAATTAGCTTCTTTTGA+AGG | + | chr6_3:14663580-14663599 | None:intergenic | 30.0% |
| TTGTGTCAACTACAGAAAAA+TGG | + | chr6_3:14663624-14663643 | None:intergenic | 30.0% | |
| AACTCATTATGTGGAAACAA+AGG | - | chr6_3:14663818-14663837 | Msa0941170:intron | 30.0% | |
| ATGTGGAAACAAAGGTTTAA+AGG | - | chr6_3:14663826-14663845 | Msa0941170:intron | 30.0% | |
| AGAAAACAGAGAAAATGAAG+CGG | - | chr6_3:14663858-14663877 | Msa0941170:intron | 30.0% | |
| ! | ATTTCTTTTCACATCACCAT+CGG | + | chr6_3:14663975-14663994 | None:intergenic | 30.0% |
| ATGCATTAGATTAGGAATGA+AGG | + | chr6_3:14664092-14664111 | None:intergenic | 30.0% | |
| TTTCTCTCATGCATTAGATT+AGG | + | chr6_3:14664100-14664119 | None:intergenic | 30.0% | |
| ! | TATAGCATTTGTTTGAGACT+TGG | + | chr6_3:14664167-14664186 | None:intergenic | 30.0% |
| GTAACTAACAATAGCGTTTA+AGG | + | chr6_3:14664431-14664450 | None:intergenic | 30.0% | |
| AGTTACACACAATATCTTGT+TGG | - | chr6_3:14664445-14664464 | Msa0941170:intron | 30.0% | |
| AATAGTCATGGCAAGAAATT+TGG | - | chr6_3:14664567-14664586 | Msa0941170:intron | 30.0% | |
| CCTATTGCAAAGTAATTCTA+AGG | + | chr6_3:14664636-14664655 | None:intergenic | 30.0% | |
| CCTTAGAATTACTTTGCAAT+AGG | - | chr6_3:14664633-14664652 | Msa0941170:intron | 30.0% | |
| ATTTGTTCCCATGTATAATC+AGG | - | chr6_3:14664760-14664779 | Msa0941170:intron | 30.0% | |
| !! | TTTCATTTTTAAAGGGTGAG+AGG | - | chr6_3:14664958-14664977 | Msa0941170:intron | 30.0% |
| !! | TTCATTTTTAAAGGGTGAGA+GGG | - | chr6_3:14664959-14664978 | Msa0941170:intron | 30.0% |
| !!! | CTGTTATTTTTGGATCACTT+TGG | - | chr6_3:14665012-14665031 | Msa0941170:intron | 30.0% |
| AAATTCATGGTTGAAAGTTC+TGG | - | chr6_3:14665070-14665089 | Msa0941170:intron | 30.0% | |
| ! | CATTAGCGGATATAATGATT+TGG | - | chr6_3:14665157-14665176 | Msa0941170:intron | 30.0% |
| TTTATCTGTGATGAAGCTTT+GGG | - | chr6_3:14665209-14665228 | Msa0941170:intron | 30.0% | |
| GATACTTGCTTTATATCTTC+AGG | - | chr6_3:14665362-14665381 | Msa0941170:intron | 30.0% | |
| TTTATATCTTCAGGAAGCTA+AGG | - | chr6_3:14665371-14665390 | Msa0941170:intron | 30.0% | |
| AATGAAAGCAGCAAAATCTA+AGG | - | chr6_3:14665432-14665451 | Msa0941170:intron | 30.0% | |
| CAAAAGCTGCTATATCAAAT+GGG | - | chr6_3:14665609-14665628 | Msa0941170:intron | 30.0% | |
| !! | CATCATATTCTGAAATTGAG+AGG | + | chr6_3:14665640-14665659 | None:intergenic | 30.0% |
| AAACATCAGAACATACGTTT+AGG | + | chr6_3:14665734-14665753 | None:intergenic | 30.0% | |
| ACTCCATGCATAAATTTCTT+AGG | - | chr6_3:14665784-14665803 | Msa0941170:intron | 30.0% | |
| !! | TGTAGTTTATAAGAGTACCT+AGG | - | chr6_3:14665815-14665834 | Msa0941170:intron | 30.0% |
| ! | ACATTCAAGTTCTTTAACCT+AGG | + | chr6_3:14665835-14665854 | None:intergenic | 30.0% |
| AGGTTAAAGAACTTGAATGT+TGG | - | chr6_3:14665835-14665854 | Msa0941170:intron | 30.0% | |
| TCAACCAGTTGTATTGTTAA+TGG | - | chr6_3:14666160-14666179 | Msa0941170:intron | 30.0% | |
| TACTTCTTTAACATCCAAAC+TGG | - | chr6_3:14666320-14666339 | Msa0941170:intron | 30.0% | |
| TTACCAAATAAAGTCCAGTT+TGG | + | chr6_3:14666337-14666356 | None:intergenic | 30.0% | |
| CTTAATCAAGTGCATTTGTT+TGG | + | chr6_3:14666361-14666380 | None:intergenic | 30.0% | |
| CAAACAAATGCACTTGATTA+AGG | - | chr6_3:14666359-14666378 | Msa0941170:intron | 30.0% | |
| ! | GAATATGCCTTTTTGTTACA+AGG | - | chr6_3:14666574-14666593 | Msa0941170:intron | 30.0% |
| GAATGACACCATTAAGATTT+AGG | - | chr6_3:14666629-14666648 | Msa0941170:CDS | 30.0% | |
| TGCTATAGCCTAAATCTTAA+TGG | + | chr6_3:14666640-14666659 | None:intergenic | 30.0% | |
| !! | CTGTTGAAGTTGATGAAAAA+TGG | - | chr6_3:14666711-14666730 | Msa0941170:CDS | 30.0% |
| ! | AACTAAACTGAAGTTAGCTT+TGG | + | chr6_3:14666803-14666822 | None:intergenic | 30.0% |
| GCAGATTACTAGTATGTAAT+TGG | + | chr6_3:14666841-14666860 | None:intergenic | 30.0% | |
| ! | TTTGGAGTGAAAAATGTGGA+GGG | + | chr6_3:14660755-14660774 | None:intergenic | 35.0% |
| !!! | TTTTGGAGTGAAAAATGTGG+AGG | + | chr6_3:14660756-14660775 | None:intergenic | 35.0% |
| AAGGTTAGAATTGAAGAACC+TGG | + | chr6_3:14661017-14661036 | None:intergenic | 35.0% | |
| TTCAGTGTAATCACAAGTGT+CGG | + | chr6_3:14661326-14661345 | None:intergenic | 35.0% | |
| TACTACAGCCTATGAAAAAC+CGG | + | chr6_3:14661406-14661425 | None:intergenic | 35.0% | |
| TGTTTGAGTCTATGCTTCAT+AGG | + | chr6_3:14661484-14661503 | None:intergenic | 35.0% | |
| ATGAAGCATAGACTCAAACA+TGG | - | chr6_3:14661484-14661503 | Msa0941170:intron | 35.0% | |
| ACACAATACATATTCGACAC+CGG | - | chr6_3:14661788-14661807 | Msa0941170:intron | 35.0% | |
| TGACACAACATTGACACATA+TGG | - | chr6_3:14661855-14661874 | Msa0941170:intron | 35.0% | |
| TCTTGTGTTGTCGACATAAA+TGG | - | chr6_3:14662199-14662218 | Msa0941170:intron | 35.0% | |
| ! | TGTAGTGTGATAATGTCTGA+AGG | - | chr6_3:14662750-14662769 | Msa0941170:CDS | 35.0% |
| !! | CACTGGTCTTTGACTTATTA+TGG | - | chr6_3:14662863-14662882 | Msa0941170:intron | 35.0% |
| ! | CTGGTCTTTGACTTATTATG+GGG | - | chr6_3:14662865-14662884 | Msa0941170:intron | 35.0% |
| ! | TTTGACTTATTATGGGGCAT+TGG | - | chr6_3:14662871-14662890 | Msa0941170:intron | 35.0% |
| ! | TTGACTTATTATGGGGCATT+GGG | - | chr6_3:14662872-14662891 | Msa0941170:intron | 35.0% |
| ! | GTACTTTGTTGATTGGTTGT+AGG | - | chr6_3:14662912-14662931 | Msa0941170:intron | 35.0% |
| !! | TGTAGGATGATGATGTTTTG+AGG | - | chr6_3:14662929-14662948 | Msa0941170:intron | 35.0% |
| TTTGTAAGAATCCAAGAGGT+GGG | - | chr6_3:14663071-14663090 | Msa0941170:intron | 35.0% | |
| ATTTAGATATGGGGAAAAGG+CGG | - | chr6_3:14663257-14663276 | Msa0941170:intron | 35.0% | |
| TGAAAGAAGAGCAACATTGT+AGG | - | chr6_3:14663425-14663444 | Msa0941170:CDS | 35.0% | |
| GAATGAACTAGTATACCAGT+AGG | + | chr6_3:14663469-14663488 | None:intergenic | 35.0% | |
| GCCTTCAAAAGAAGCTAATT+TGG | - | chr6_3:14663576-14663595 | Msa0941170:CDS | 35.0% | |
| ! | TTTCAATTGCATCGATGAAG+AGG | + | chr6_3:14663680-14663699 | None:intergenic | 35.0% |
| ! | CATAATGAGTTTTCCTTCTC+AGG | + | chr6_3:14663809-14663828 | None:intergenic | 35.0% |
| GAGAAGGAAAACTCATTATG+TGG | - | chr6_3:14663809-14663828 | Msa0941170:intron | 35.0% | |
| GAAAACAGAGAAAATGAAGC+GGG | - | chr6_3:14663859-14663878 | Msa0941170:intron | 35.0% | |
| AATGAAGCGGGAAAAGTTAA+AGG | - | chr6_3:14663871-14663890 | Msa0941170:intron | 35.0% | |
| AAAAGGCCTAAACTTTCCAA+CGG | - | chr6_3:14663944-14663963 | Msa0941170:intron | 35.0% | |
| AAGAAATGCAGATGCTGATA+CGG | - | chr6_3:14663988-14664007 | Msa0941170:intron | 35.0% | |
| ! | TTAGAATTCTGCAGAGTGTT+TGG | - | chr6_3:14664301-14664320 | Msa0941170:CDS | 35.0% |
| !!! | TAAGTTTTGGCTGGTTTAGT+TGG | - | chr6_3:14664499-14664518 | Msa0941170:CDS | 35.0% |
| !!! | AAGTTTTGGCTGGTTTAGTT+GGG | - | chr6_3:14664500-14664519 | Msa0941170:CDS | 35.0% |
| TCAAAGTCAACAGCTTGATT+TGG | + | chr6_3:14664883-14664902 | None:intergenic | 35.0% | |
| !! | TTTTTGGATCACTTTGGTGT+AGG | - | chr6_3:14665018-14665037 | Msa0941170:intron | 35.0% |
| CTGGCAATGGAAAAAATTCA+TGG | - | chr6_3:14665057-14665076 | Msa0941170:intron | 35.0% | |
| GAGGATTTGATTACTGAATC+TGG | - | chr6_3:14665092-14665111 | Msa0941170:intron | 35.0% | |
| ! | TGCTGCACTAAAAGATTTTC+CGG | - | chr6_3:14665115-14665134 | Msa0941170:intron | 35.0% |
| ! | TAAAAGATTTTCCGGAGGAT+TGG | - | chr6_3:14665123-14665142 | Msa0941170:intron | 35.0% |
| CATCACAGATAAAGTTCAGA+AGG | + | chr6_3:14665202-14665221 | None:intergenic | 35.0% | |
| CTTTATCTGTGATGAAGCTT+TGG | - | chr6_3:14665208-14665227 | Msa0941170:intron | 35.0% | |
| GGAAAAGGTAAGATGATACA+AGG | - | chr6_3:14665468-14665487 | Msa0941170:intron | 35.0% | |
| AAAGGTAAGATGATACAAGG+TGG | - | chr6_3:14665471-14665490 | Msa0941170:intron | 35.0% | |
| GTTGTGTACATGTTATCTAC+AGG | - | chr6_3:14665550-14665569 | Msa0941170:intron | 35.0% | |
| AAGTCTTAAGCAAAAGTTGC+AGG | - | chr6_3:14665577-14665596 | Msa0941170:intron | 35.0% | |
| GCAAAAGCTGCTATATCAAA+TGG | - | chr6_3:14665608-14665627 | Msa0941170:intron | 35.0% | |
| CCACCTAAGAAATTTATGCA+TGG | + | chr6_3:14665790-14665809 | None:intergenic | 35.0% | |
| CCATGCATAAATTTCTTAGG+TGG | - | chr6_3:14665787-14665806 | Msa0941170:intron | 35.0% | |
| TTATGACAACACTTTGGCTA+AGG | - | chr6_3:14665863-14665882 | Msa0941170:intron | 35.0% | |
| ACACTTTGGCTAAGGTATAT+AGG | - | chr6_3:14665871-14665890 | Msa0941170:intron | 35.0% | |
| TGGATTCAACACTTCATTCA+AGG | + | chr6_3:14666052-14666071 | None:intergenic | 35.0% | |
| !! | AATGAAGTGTTGAATCCATG+TGG | - | chr6_3:14666054-14666073 | Msa0941170:intron | 35.0% |
| TAACATTAACATGAGCCACA+TGG | + | chr6_3:14666072-14666091 | None:intergenic | 35.0% | |
| ATGCTATTACAGGAGAACTT+TGG | - | chr6_3:14666116-14666135 | Msa0941170:intron | 35.0% | |
| GCAACCATTAACAATACAAC+TGG | + | chr6_3:14666167-14666186 | None:intergenic | 35.0% | |
| CATCCAAACTGGACTTTATT+TGG | - | chr6_3:14666331-14666350 | Msa0941170:intron | 35.0% | |
| TCAATGTTCTGCTATTGCAA+TGG | - | chr6_3:14666431-14666450 | Msa0941170:intron | 35.0% | |
| ! | ATAACAGTGGTAATGCATTC+TGG | - | chr6_3:14666530-14666549 | Msa0941170:intron | 35.0% |
| TCACTAAGTACATTTCCTCT+AGG | - | chr6_3:14666765-14666784 | Msa0941170:five_prime_UTR | 35.0% | |
| TTACATACTAGTAATCTGCC+AGG | - | chr6_3:14666842-14666861 | Msa0941170:five_prime_UTR | 35.0% | |
| TACATACTAGTAATCTGCCA+GGG | - | chr6_3:14666843-14666862 | Msa0941170:five_prime_UTR | 35.0% | |
| AATCTGCCAGGGATAATTTA+AGG | - | chr6_3:14666854-14666873 | Msa0941170:five_prime_UTR | 35.0% | |
| ! | TGAATTCGGGAAAATGGGTT+TGG | + | chr6_3:14660782-14660801 | None:intergenic | 40.0% |
| GCTAAAACTGAAAGAGAGTG+AGG | - | chr6_3:14660873-14660892 | Msa0941170:CDS | 40.0% | |
| ! | GTTGTTGTTGTTGATGCGAA+TGG | - | chr6_3:14660901-14660920 | Msa0941170:intron | 40.0% |
| AAACGGAAAATCTTGTCACC+AGG | - | chr6_3:14660996-14661015 | Msa0941170:intron | 40.0% | |
| !!! | TGTTTGTGCCGGTTTTTCAT+AGG | - | chr6_3:14661395-14661414 | Msa0941170:intron | 40.0% |
| TCATAGGCTGTAGTAGTTGT+AGG | - | chr6_3:14661411-14661430 | Msa0941170:intron | 40.0% | |
| ATAGACTCAAACATGGACAC+TGG | - | chr6_3:14661491-14661510 | Msa0941170:intron | 40.0% | |
| ACACGATACATATCTGTCAC+TGG | - | chr6_3:14661596-14661615 | Msa0941170:intron | 40.0% | |
| CACGATACATATCTGTCACT+GGG | - | chr6_3:14661597-14661616 | Msa0941170:intron | 40.0% | |
| GATTAAGCATGTCATGGTCT+CGG | + | chr6_3:14661636-14661655 | None:intergenic | 40.0% | |
| ACCATGACATGCTTAATCTG+AGG | - | chr6_3:14661638-14661657 | Msa0941170:intron | 40.0% | |
| TCCTCAGATTAAGCATGTCA+TGG | + | chr6_3:14661642-14661661 | None:intergenic | 40.0% | |
| TATTGATGTCAAGTCGGTGT+TGG | - | chr6_3:14661765-14661784 | Msa0941170:intron | 40.0% | |
| CACAATACATATTCGACACC+GGG | - | chr6_3:14661789-14661808 | Msa0941170:intron | 40.0% | |
| TCATAAGATTATGCGTGTCC+CGG | + | chr6_3:14661810-14661829 | None:intergenic | 40.0% | |
| GATGTTGCTACTACTTAGCA+TGG | - | chr6_3:14662052-14662071 | Msa0941170:intron | 40.0% | |
| CAGTGTGTTGTCAGCAATAA+TGG | - | chr6_3:14662645-14662664 | Msa0941170:intron | 40.0% | |
| !! | TTCTGAGATGTGGTGATTTC+TGG | - | chr6_3:14662823-14662842 | Msa0941170:intron | 40.0% |
| !! | TGACTAGCTTGTAACTGTGT+TGG | - | chr6_3:14662959-14662978 | Msa0941170:intron | 40.0% |
| ! | GGTTTTCCACATTGAAGTGT+CGG | - | chr6_3:14663023-14663042 | Msa0941170:intron | 40.0% |
| ! | TTTTTGCCGACACTTCAATG+TGG | + | chr6_3:14663032-14663051 | None:intergenic | 40.0% |
| !! | GAAGTGTCGGCAAAAAACAA+TGG | - | chr6_3:14663036-14663055 | Msa0941170:intron | 40.0% |
| GCTGTTTGTAAGAATCCAAG+AGG | - | chr6_3:14663067-14663086 | Msa0941170:intron | 40.0% | |
| GTTTGTAAGAATCCAAGAGG+TGG | - | chr6_3:14663070-14663089 | Msa0941170:intron | 40.0% | |
| AAATGCCTCTTGAACAGGTT+TGG | - | chr6_3:14663121-14663140 | Msa0941170:intron | 40.0% | |
| TGGAATTGTCCAAAGTGCAA+AGG | - | chr6_3:14663303-14663322 | Msa0941170:CDS | 40.0% | |
| TTGCAGATTCCTTTGCACTT+TGG | + | chr6_3:14663315-14663334 | None:intergenic | 40.0% | |
| CAGTCTTTGCATGTAAGTTG+TGG | - | chr6_3:14663338-14663357 | Msa0941170:CDS | 40.0% | |
| AAAAGAGGTCATCAACCTAC+TGG | - | chr6_3:14663451-14663470 | Msa0941170:CDS | 40.0% | |
| TATACTAGTTCATTCGGCCA+AGG | - | chr6_3:14663474-14663493 | Msa0941170:CDS | 40.0% | |
| AGAGTTAAAACCAGATGCCT+TGG | + | chr6_3:14663494-14663513 | None:intergenic | 40.0% | |
| CAAATCTTCAGAAGCCTTCT+TGG | + | chr6_3:14663533-14663552 | None:intergenic | 40.0% | |
| ! | CAAGAAGGCTTCTGAAGATT+TGG | - | chr6_3:14663531-14663550 | Msa0941170:CDS | 40.0% |
| TATACTACAGGAGCTTGTAG+TGG | - | chr6_3:14663769-14663788 | Msa0941170:CDS | 40.0% | |
| GAAACTCCGTTGGAAAGTTT+AGG | + | chr6_3:14663953-14663972 | None:intergenic | 40.0% | |
| ACAAAAGTAGAGCAGAGTCA+TGG | - | chr6_3:14664013-14664032 | Msa0941170:CDS | 40.0% | |
| TCATTTGCAGAACAAGCCTT+AGG | + | chr6_3:14664064-14664083 | None:intergenic | 40.0% | |
| ATGCATGAGAGAAATTGCCA+AGG | - | chr6_3:14664106-14664125 | Msa0941170:CDS | 40.0% | |
| ! | ATAGCTGATGGTGAAAATGC+TGG | - | chr6_3:14664139-14664158 | Msa0941170:intron | 40.0% |
| AATGCATTCCCAACATCTTC+GGG | + | chr6_3:14664274-14664293 | None:intergenic | 40.0% | |
| CAATGCATTCCCAACATCTT+CGG | + | chr6_3:14664275-14664294 | None:intergenic | 40.0% | |
| ! | ATTCTGCAGAGTGTTTGGAA+AGG | - | chr6_3:14664306-14664325 | Msa0941170:CDS | 40.0% |
| CTACTAGATGCAGCAGTAAA+AGG | + | chr6_3:14664375-14664394 | None:intergenic | 40.0% | |
| !!! | AGTTTTGGCTGGTTTAGTTG+GGG | - | chr6_3:14664501-14664520 | Msa0941170:CDS | 40.0% |
| TCGAGAGCCTGATTATACAT+GGG | + | chr6_3:14664770-14664789 | None:intergenic | 40.0% | |
| ATCGAGAGCCTGATTATACA+TGG | + | chr6_3:14664771-14664790 | None:intergenic | 40.0% | |
| GATCTTAAGAAAGGAGAAGC+AGG | - | chr6_3:14664788-14664807 | Msa0941170:intron | 40.0% | |
| ! | TTTTCCATTGCCAGCAGTTA+AGG | + | chr6_3:14665051-14665070 | None:intergenic | 40.0% |
| ! | TTCATGGTTGAAAGTTCTGG+AGG | - | chr6_3:14665073-14665092 | Msa0941170:intron | 40.0% |
| ! | TGCACTAAAAGATTTTCCGG+AGG | - | chr6_3:14665118-14665137 | Msa0941170:intron | 40.0% |
| !! | TGGCTCAATAAAGGCATTAG+CGG | - | chr6_3:14665143-14665162 | Msa0941170:intron | 40.0% |
| TGCTATTCCAAACTGTCACA+TGG | - | chr6_3:14665517-14665536 | Msa0941170:intron | 40.0% | |
| ATGAACACCATGTGACAGTT+TGG | + | chr6_3:14665527-14665546 | None:intergenic | 40.0% | |
| TCAACTCAGTGCAGATAGTA+GGG | + | chr6_3:14666014-14666033 | None:intergenic | 40.0% | |
| GTGGCTCATGTTAATGTTAG+CGG | - | chr6_3:14666073-14666092 | Msa0941170:intron | 40.0% | |
| TGGCTCATGTTAATGTTAGC+GGG | - | chr6_3:14666074-14666093 | Msa0941170:intron | 40.0% | |
| ! | AATGTTAGCGGGTATAGTAC+TGG | - | chr6_3:14666085-14666104 | Msa0941170:intron | 40.0% |
| ACAGGAGAACTTTGGATTCA+TGG | - | chr6_3:14666124-14666143 | Msa0941170:intron | 40.0% | |
| TGGTTCCCTACGATGTTATA+AGG | + | chr6_3:14666472-14666491 | None:intergenic | 40.0% | |
| CTTCAACAGCATGTTCATCA+TGG | + | chr6_3:14666700-14666719 | None:intergenic | 40.0% | |
| ! | ACATTTCCTCTAGGAGAGAT+TGG | - | chr6_3:14666774-14666793 | Msa0941170:five_prime_UTR | 40.0% |
| ! | TGTCCTAAGTTCCAGTGTTT+TGG | - | chr6_3:14666896-14666915 | Msa0941170:five_prime_UTR | 40.0% |
| TCACCAAAACACTGGAACTT+AGG | + | chr6_3:14666902-14666921 | None:intergenic | 40.0% | |
| AGTTCCCACTTTGTGTGATG+TGG | + | chr6_3:14660694-14660713 | None:intergenic | 45.0% | |
| GAGTGAAAAATGTGGAGGGA+GGG | + | chr6_3:14660751-14660770 | None:intergenic | 45.0% | |
| GTGTCAGACACAACACATGT+CGG | + | chr6_3:14661304-14661323 | None:intergenic | 45.0% | |
| TGTCAATGTCGTGTTTGTGC+CGG | - | chr6_3:14661384-14661403 | Msa0941170:intron | 45.0% | |
| GTGTCAGTGCTTCATAGCAT+AGG | + | chr6_3:14661707-14661726 | None:intergenic | 45.0% | |
| !! | TTTGATGGGTTGTAGGGTGA+CGG | - | chr6_3:14662297-14662316 | Msa0941170:intron | 45.0% |
| !! | TTGTAGGGTGACGGTTTTGA+AGG | - | chr6_3:14662306-14662325 | Msa0941170:intron | 45.0% |
| ACATGACACTGCACAGAAAG+TGG | - | chr6_3:14662528-14662547 | Msa0941170:CDS | 45.0% | |
| CATGACACTGCACAGAAAGT+GGG | - | chr6_3:14662529-14662548 | Msa0941170:CDS | 45.0% | |
| ! | TGAGATGTGGTGATTTCTGG+AGG | - | chr6_3:14662826-14662845 | Msa0941170:intron | 45.0% |
| ! | GAGATGTGGTGATTTCTGGA+GGG | - | chr6_3:14662827-14662846 | Msa0941170:intron | 45.0% |
| !! | ACCTGTTCAAGAGGCATTTG+TGG | + | chr6_3:14663120-14663139 | None:intergenic | 45.0% |
| GTCAGCAATGCTTACCAAGA+AGG | - | chr6_3:14663516-14663535 | Msa0941170:CDS | 45.0% | |
| !! | AGCTTGTAGTGGATCTATCG+TGG | - | chr6_3:14663780-14663799 | Msa0941170:CDS | 45.0% |
| !! | GCTTGTAGTGGATCTATCGT+GGG | - | chr6_3:14663781-14663800 | Msa0941170:CDS | 45.0% |
| CAGAGTCATGGAATGATTCC+TGG | - | chr6_3:14664025-14664044 | Msa0941170:CDS | 45.0% | |
| TGGAATGATTCCTGGTCAGA+TGG | - | chr6_3:14664033-14664052 | Msa0941170:CDS | 45.0% | |
| CAGCTATCACAACAGTACCT+TGG | + | chr6_3:14664126-14664145 | None:intergenic | 45.0% | |
| GGTACTGTTGTGATAGCTGA+TGG | - | chr6_3:14664127-14664146 | Msa0941170:CDS | 45.0% | |
| GAAGAAATTCCTTTGCCCCT+TGG | - | chr6_3:14664211-14664230 | Msa0941170:intron | 45.0% | |
| TTTGGTCATCTCAGTGCCAA+GGG | + | chr6_3:14664230-14664249 | None:intergenic | 45.0% | |
| ! | TTTTGGTCATCTCAGTGCCA+AGG | + | chr6_3:14664231-14664250 | None:intergenic | 45.0% |
| AGTTTGCACCCGAAGATGTT+GGG | - | chr6_3:14664263-14664282 | Msa0941170:CDS | 45.0% | |
| CAGGCTCTCGATCTTAAGAA+AGG | - | chr6_3:14664779-14664798 | Msa0941170:intron | 45.0% | |
| CGTAAGCAAAATTTGCGACG+TGG | - | chr6_3:14664833-14664852 | Msa0941170:intron | 45.0% | |
| ! | GATTTGGAACTCAACCACCA+AGG | + | chr6_3:14664867-14664886 | None:intergenic | 45.0% |
| AGGTCTTCATCCTTAACTGC+TGG | - | chr6_3:14665038-14665057 | Msa0941170:intron | 45.0% | |
| TCATCCTTAACTGCTGGCAA+TGG | - | chr6_3:14665044-14665063 | Msa0941170:intron | 45.0% | |
| CCTTTATTGAGCCAATCCTC+CGG | + | chr6_3:14665137-14665156 | None:intergenic | 45.0% | |
| ! | ATCTAAGGTCGCTGAAGCTA+AGG | - | chr6_3:14665447-14665466 | Msa0941170:intron | 45.0% |
| GCAAAAGTTGCAGGATGAGA+TGG | - | chr6_3:14665586-14665605 | Msa0941170:intron | 45.0% | |
| ACTGAGTTGCTTGAGGCAAA+AGG | - | chr6_3:14665701-14665720 | Msa0941170:intron | 45.0% | |
| CTCAACTCAGTGCAGATAGT+AGG | + | chr6_3:14666015-14666034 | None:intergenic | 45.0% | |
| GGTGTGACACATGCTATTAC+AGG | - | chr6_3:14666106-14666125 | Msa0941170:intron | 45.0% | |
| AATGGTTGCTGTCATTCGCT+TGG | - | chr6_3:14666178-14666197 | Msa0941170:intron | 45.0% | |
| ! | CATTCGCTTGGTTGATGTCA+TGG | - | chr6_3:14666190-14666209 | Msa0941170:intron | 45.0% |
| TTCTCACTGCATCACAGCAT+TGG | + | chr6_3:14666492-14666511 | None:intergenic | 45.0% | |
| GAGAATTGAGCCTGAGTACT+TGG | - | chr6_3:14666507-14666526 | Msa0941170:intron | 45.0% | |
| CCACTGTTATCCAAGTACTC+AGG | + | chr6_3:14666520-14666539 | None:intergenic | 45.0% | |
| CCTGAGTACTTGGATAACAG+TGG | - | chr6_3:14666517-14666536 | Msa0941170:intron | 45.0% | |
| TGTTTATGGAGCTGTGCAGA+AGG | - | chr6_3:14666736-14666755 | Msa0941170:exon | 45.0% | |
| TGGTAACCAATCTCTCCTAG+AGG | + | chr6_3:14666783-14666802 | None:intergenic | 45.0% | |
| TCCCACTTTGTGTGATGTGG+CGG | + | chr6_3:14660691-14660710 | None:intergenic | 50.0% | |
| GGAGTGAAAAATGTGGAGGG+AGG | + | chr6_3:14660752-14660771 | None:intergenic | 50.0% | |
| AGTCGTCGTAACAACTCACG+CGG | - | chr6_3:14660937-14660956 | Msa0941170:intron | 50.0% | |
| TCACGCGGTGTTCGTGTTAT+CGG | - | chr6_3:14660952-14660971 | Msa0941170:intron | 50.0% | |
| TGTCTGTGTCAGTGCTTCAC+AGG | - | chr6_3:14661204-14661223 | Msa0941170:intron | 50.0% | |
| ACACAACACATGTCGGACAC+TGG | + | chr6_3:14661297-14661316 | None:intergenic | 50.0% | |
| ! | AGGGAGCACATTTCGAACAC+TGG | - | chr6_3:14662846-14662865 | Msa0941170:intron | 50.0% |
| TGGCAGAACCTGATGACACA+AGG | + | chr6_3:14663100-14663119 | None:intergenic | 50.0% | |
| GCCACAAATGCCTCTTGAAC+AGG | - | chr6_3:14663116-14663135 | Msa0941170:intron | 50.0% | |
| GGGAACCAAACCTGTTCAAG+AGG | + | chr6_3:14663129-14663148 | None:intergenic | 50.0% | |
| ATATGGGGAAAAGGCGGAAG+AGG | - | chr6_3:14663263-14663282 | Msa0941170:intron | 50.0% | |
| TCTATCGTGGGAACCTGAGA+AGG | - | chr6_3:14663793-14663812 | Msa0941170:CDS | 50.0% | |
| CTTTCCAACGGAGTTTCCGA+TGG | - | chr6_3:14663956-14663975 | Msa0941170:intron | 50.0% | |
| ATCACCATCGGAAACTCCGT+TGG | + | chr6_3:14663963-14663982 | None:intergenic | 50.0% | |
| !! | TTAGGAGCATCCATCTGACC+AGG | + | chr6_3:14664046-14664065 | None:intergenic | 50.0% |
| TGGTCAGATGGATGCTCCTA+AGG | - | chr6_3:14664045-14664064 | Msa0941170:CDS | 50.0% | |
| TTGGTCATCTCAGTGCCAAG+GGG | + | chr6_3:14664229-14664248 | None:intergenic | 50.0% | |
| CATCTTCGGGTGCAAACTCA+AGG | + | chr6_3:14664261-14664280 | None:intergenic | 50.0% | |
| GAGTTTGCACCCGAAGATGT+TGG | - | chr6_3:14664262-14664281 | Msa0941170:CDS | 50.0% | |
| ACGTGGACAAAATGCCTTGG+TGG | - | chr6_3:14664850-14664869 | Msa0941170:intron | 50.0% | |
| !! | CCGGAGGATTGGCTCAATAA+AGG | - | chr6_3:14665134-14665153 | Msa0941170:intron | 50.0% |
| GGTCGCTGAAGCTAAGGAAA+AGG | - | chr6_3:14665453-14665472 | Msa0941170:intron | 50.0% | |
| AGCTCGTACTGAGTTGCTTG+AGG | - | chr6_3:14665694-14665713 | Msa0941170:intron | 50.0% | |
| TCCCGCCACATCACACAAAG+TGG | - | chr6_3:14660686-14660705 | Msa0941170:three_prime_UTR | 55.0% | |
| CCCACTTTGTGTGATGTGGC+GGG | + | chr6_3:14660690-14660709 | None:intergenic | 55.0% | |
| CCCGCCACATCACACAAAGT+GGG | - | chr6_3:14660687-14660706 | Msa0941170:three_prime_UTR | 55.0% | |
| ACACAAGGCTTCCCACCTCT+TGG | + | chr6_3:14663085-14663104 | None:intergenic | 55.0% | |
| ! | GTGGGAAGCCTTGTGTCATC+AGG | - | chr6_3:14663089-14663108 | Msa0941170:intron | 55.0% |
| ! | GTTCATTCGGCCAAGGCATC+TGG | - | chr6_3:14663481-14663500 | Msa0941170:CDS | 55.0% |
| ATCTCAGTGCCAAGGGGCAA+AGG | + | chr6_3:14664223-14664242 | None:intergenic | 55.0% | |
| GCGACGTGGACAAAATGCCT+TGG | - | chr6_3:14664847-14664866 | Msa0941170:intron | 55.0% | |
| TGGAGCTGTGCAGAAGGATG+AGG | - | chr6_3:14666742-14666761 | Msa0941170:exon | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 14660679 | 14666921 | 14660679 | ID=Msa0941170;Name=Msa0941170 |
| chr6_3 | mRNA | 14660679 | 14666921 | 14660679 | ID=Msa0941170-mRNA-1;Parent=Msa0941170;Name=Msa0941170-mRNA-1;_AED=0.14;_eAED=0.14;_QI=171|1|1|1|1|1|11|101|633 |
| chr6_3 | exon | 14660679 | 14660913 | 14660679 | ID=Msa0941170-mRNA-1:exon:4536;Parent=Msa0941170-mRNA-1 |
| chr6_3 | exon | 14661005 | 14661115 | 14661005 | ID=Msa0941170-mRNA-1:exon:4535;Parent=Msa0941170-mRNA-1 |
| chr6_3 | exon | 14661863 | 14662028 | 14661863 | ID=Msa0941170-mRNA-1:exon:4534;Parent=Msa0941170-mRNA-1 |
| chr6_3 | exon | 14662126 | 14662216 | 14662126 | ID=Msa0941170-mRNA-1:exon:4533;Parent=Msa0941170-mRNA-1 |
| chr6_3 | exon | 14662363 | 14662560 | 14662363 | ID=Msa0941170-mRNA-1:exon:4532;Parent=Msa0941170-mRNA-1 |
| chr6_3 | exon | 14662676 | 14662818 | 14662676 | ID=Msa0941170-mRNA-1:exon:4531;Parent=Msa0941170-mRNA-1 |
| chr6_3 | exon | 14663273 | 14663821 | 14663273 | ID=Msa0941170-mRNA-1:exon:4530;Parent=Msa0941170-mRNA-1 |
| chr6_3 | exon | 14663997 | 14664153 | 14663997 | ID=Msa0941170-mRNA-1:exon:4529;Parent=Msa0941170-mRNA-1 |
| chr6_3 | exon | 14664251 | 14664337 | 14664251 | ID=Msa0941170-mRNA-1:exon:4528;Parent=Msa0941170-mRNA-1 |
| chr6_3 | exon | 14664463 | 14664560 | 14664463 | ID=Msa0941170-mRNA-1:exon:4527;Parent=Msa0941170-mRNA-1 |
| chr6_3 | exon | 14666583 | 14666921 | 14666583 | ID=Msa0941170-mRNA-1:exon:4526;Parent=Msa0941170-mRNA-1 |
| chr6_3 | five_prime_UTR | 14666751 | 14666921 | 14666751 | ID=Msa0941170-mRNA-1:five_prime_utr;Parent=Msa0941170-mRNA-1 |
| chr6_3 | CDS | 14666583 | 14666750 | 14666583 | ID=Msa0941170-mRNA-1:cds;Parent=Msa0941170-mRNA-1 |
| chr6_3 | CDS | 14664463 | 14664560 | 14664463 | ID=Msa0941170-mRNA-1:cds;Parent=Msa0941170-mRNA-1 |
| chr6_3 | CDS | 14664251 | 14664337 | 14664251 | ID=Msa0941170-mRNA-1:cds;Parent=Msa0941170-mRNA-1 |
| chr6_3 | CDS | 14663997 | 14664153 | 14663997 | ID=Msa0941170-mRNA-1:cds;Parent=Msa0941170-mRNA-1 |
| chr6_3 | CDS | 14663273 | 14663821 | 14663273 | ID=Msa0941170-mRNA-1:cds;Parent=Msa0941170-mRNA-1 |
| chr6_3 | CDS | 14662676 | 14662818 | 14662676 | ID=Msa0941170-mRNA-1:cds;Parent=Msa0941170-mRNA-1 |
| chr6_3 | CDS | 14662363 | 14662560 | 14662363 | ID=Msa0941170-mRNA-1:cds;Parent=Msa0941170-mRNA-1 |
| chr6_3 | CDS | 14662126 | 14662216 | 14662126 | ID=Msa0941170-mRNA-1:cds;Parent=Msa0941170-mRNA-1 |
| chr6_3 | CDS | 14661863 | 14662028 | 14661863 | ID=Msa0941170-mRNA-1:cds;Parent=Msa0941170-mRNA-1 |
| chr6_3 | CDS | 14661005 | 14661115 | 14661005 | ID=Msa0941170-mRNA-1:cds;Parent=Msa0941170-mRNA-1 |
| chr6_3 | CDS | 14660780 | 14660913 | 14660780 | ID=Msa0941170-mRNA-1:cds;Parent=Msa0941170-mRNA-1 |
| chr6_3 | three_prime_UTR | 14660679 | 14660779 | 14660679 | ID=Msa0941170-mRNA-1:three_prime_utr;Parent=Msa0941170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
