Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa0041850 | 0.811188 | 7.932154e-51 | -8.615850e-47 |
| Msa0041850 | Msa0048510 | 0.820334 | 7.247642e-53 | -8.615850e-47 |
| Msa0041850 | Msa0077340 | 0.836394 | 9.600201e-57 | -8.615850e-47 |
| Msa0041850 | Msa0077560 | 0.836062 | 1.166093e-56 | -8.615850e-47 |
| Msa0041850 | Msa0094780 | 0.850158 | 2.034347e-60 | -8.615850e-47 |
| Msa0041850 | Msa0123070 | 0.814508 | 1.486360e-51 | -8.615850e-47 |
| Msa0041850 | Msa0125360 | 0.804405 | 2.194226e-49 | -8.615850e-47 |
| Msa0041850 | Msa0133280 | 0.802885 | 4.536003e-49 | -8.615850e-47 |
| Msa0041850 | Msa0179130 | 0.973544 | 1.310096e-136 | -8.615850e-47 |
| Msa0041850 | Msa0213030 | 0.819586 | 1.074251e-52 | -8.615850e-47 |
| Msa0041850 | Msa0225860 | 0.802420 | 5.656910e-49 | -8.615850e-47 |
| Msa0041850 | Msa0241610 | 0.833818 | 4.285671e-56 | -8.615850e-47 |
| Msa0041850 | Msa0260510 | 0.805325 | 1.409821e-49 | -8.615850e-47 |
| Msa0041850 | Msa0269210 | 0.819407 | 1.180400e-52 | -8.615850e-47 |
| Msa0041850 | Msa0300320 | 0.801511 | 8.698812e-49 | -8.615850e-47 |
| Msa0041850 | Msa0307270 | 0.835349 | 1.766904e-56 | -8.615850e-47 |
| Msa0041850 | Msa0330380 | 0.801401 | 9.163129e-49 | -8.615850e-47 |
| Msa0041850 | Msa0361910 | 0.867899 | 9.734051e-66 | -8.615850e-47 |
| Msa0041850 | Msa0377710 | 0.808020 | 3.801775e-50 | -8.615850e-47 |
| Msa0041850 | Msa0409830 | 0.846897 | 1.627605e-59 | -8.615850e-47 |
| Msa0041850 | Msa0436330 | 0.802011 | 6.869636e-49 | -8.615850e-47 |
| Msa0041850 | Msa0481890 | 0.823097 | 1.663883e-53 | -8.615850e-47 |
| Msa0041850 | Msa0483100 | 0.800972 | 1.121274e-48 | -8.615850e-47 |
| Msa0041850 | Msa0529030 | 0.824648 | 7.202460e-54 | -8.615850e-47 |
| Msa0041850 | Msa0534720 | 0.821028 | 5.018606e-53 | -8.615850e-47 |
| Msa0041850 | Msa0567170 | 0.811882 | 5.604441e-51 | -8.615850e-47 |
| Msa0041850 | Msa0580370 | 0.810515 | 1.109349e-50 | -8.615850e-47 |
| Msa0041850 | Msa0624900 | 0.830749 | 2.464047e-55 | -8.615850e-47 |
| Msa0041850 | Msa0658640 | 0.815085 | 1.107417e-51 | -8.615850e-47 |
| Msa0041850 | Msa0702720 | 0.802570 | 5.268592e-49 | -8.615850e-47 |
| Msa0041850 | Msa0703600 | 0.812303 | 4.536360e-51 | -8.615850e-47 |
| Msa0041850 | Msa0709200 | 0.812702 | 3.712701e-51 | -8.615850e-47 |
| Msa0041850 | Msa0709440 | 0.823507 | 1.334373e-53 | -8.615850e-47 |
| Msa0041850 | Msa0735780 | 0.834779 | 2.459707e-56 | -8.615850e-47 |
| Msa0041850 | Msa0777750 | 0.803406 | 3.539784e-49 | -8.615850e-47 |
| Msa0041850 | Msa0795870 | 0.815271 | 1.007068e-51 | -8.615850e-47 |
| Msa0041850 | Msa0815970 | 0.826960 | 2.036640e-54 | -8.615850e-47 |
| Msa0041850 | Msa0824450 | 0.803357 | 3.623861e-49 | -8.615850e-47 |
| Msa0041850 | Msa0828970 | 0.804985 | 1.660365e-49 | -8.615850e-47 |
| Msa0041850 | Msa0833650 | 0.807077 | 6.029537e-50 | -8.615850e-47 |
| Msa0041850 | Msa0878280 | 0.821577 | 3.750380e-53 | -8.615850e-47 |
| Msa0041850 | Msa0888790 | 0.800411 | 1.459658e-48 | -8.615850e-47 |
| Msa0041850 | Msa0941170 | 0.818266 | 2.144168e-52 | -8.615850e-47 |
| Msa0041850 | Msa0980290 | 0.818133 | 2.298114e-52 | -8.615850e-47 |
| Msa0041850 | Msa1072940 | 0.821823 | 3.290106e-53 | -8.615850e-47 |
| Msa0041850 | Msa1084530 | 0.815026 | 1.141303e-51 | -8.615850e-47 |
| Msa0041850 | Msa1125820 | 0.808521 | 2.972694e-50 | -8.615850e-47 |
| Msa0041850 | Msa1125990 | 0.811457 | 6.935688e-51 | -8.615850e-47 |
| Msa0041850 | Msa1132840 | 0.809820 | 1.566676e-50 | -8.615850e-47 |
| Msa0041850 | Msa1160920 | 0.824097 | 9.706012e-54 | -8.615850e-47 |
| Msa0041850 | Msa1171290 | 0.824284 | 8.771138e-54 | -8.615850e-47 |
| Msa0041850 | Msa1190590 | 0.802564 | 5.283468e-49 | -8.615850e-47 |
| Msa0041850 | Msa1192570 | 0.838340 | 3.047193e-57 | -8.615850e-47 |
| Msa0041850 | Msa1200890 | 0.815419 | 9.333238e-52 | -8.615850e-47 |
| Msa0041850 | Msa1208950 | 0.831945 | 1.251822e-55 | -8.615850e-47 |
| Msa0041850 | Msa1226520 | 0.808120 | 3.620643e-50 | -8.615850e-47 |
| Msa0041850 | Msa1341840 | 0.806577 | 7.687445e-50 | -8.615850e-47 |
| Msa0041850 | Msa1398810 | 0.807103 | 5.951829e-50 | -8.615850e-47 |
| Msa0041850 | Msa1405460 | 0.825828 | 3.787659e-54 | -8.615850e-47 |
| Msa0041850 | Msa1440880 | 0.820362 | 7.141640e-53 | -8.615850e-47 |
| Msa0041850 | Msa1461370 | 0.812007 | 5.265210e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041850 | MtrunA17_Chr1g0207541 | 95.549 | 719 | 28 | 3 | 1 | 719 | 1 | 715 | 0.0 | 1382 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0041850 | AT1G49870.1 | 44.103 | 814 | 303 | 23 | 28 | 711 | 32 | 823 | 3.85e-173 | 517 |
| Msa0041850 | AT1G49870.2 | 44.081 | 794 | 297 | 22 | 48 | 711 | 9 | 785 | 6.17e-171 | 510 |
Find 169 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCATTGGCTGTTCTCTTTC+TGG | -0.029662 | 1_1:+72423262 | None:intergenic |
| CGGACTTGAGTTCACTCTTT+TGG | 0.163007 | 1_1:+72423948 | None:intergenic |
| CGAAAATGATAATGTATTAT+TGG | 0.216712 | 1_1:+72425440 | None:intergenic |
| TAAGTTGATAACAAGGAATT+TGG | 0.228352 | 1_1:-72422475 | Msa0041850:three_prime_UTR |
| TCTATTTGACAATGCTTCTT+TGG | 0.229577 | 1_1:+72424232 | None:intergenic |
| TGATGGGTTGGAGAAGATTT+TGG | 0.232028 | 1_1:-72423153 | Msa0041850:CDS |
| AGCAGAAGCTCAACTATTAA+AGG | 0.244271 | 1_1:-72424329 | Msa0041850:CDS |
| ATAGAGACACCCTCTATTAA+TGG | 0.259371 | 1_1:-72424214 | Msa0041850:CDS |
| ACCTGATTTGGGAAGTATTC+TGG | 0.265806 | 1_1:-72423465 | Msa0041850:CDS |
| ATCGGAGTGCATACCTGATT+TGG | 0.296691 | 1_1:-72423477 | Msa0041850:CDS |
| GCAACTATAGTTGCAACTTA+TGG | 0.305864 | 1_1:-72423782 | Msa0041850:CDS |
| TTGCGCGGAAACCAGTTAAT+AGG | 0.308760 | 1_1:+72424834 | None:intergenic |
| AATGATAATGAAACAAAATT+AGG | 0.316246 | 1_1:-72423536 | Msa0041850:CDS |
| AATAAATTGACGAAGGAATT+AGG | 0.317425 | 1_1:-72424927 | Msa0041850:CDS |
| GTAAAACTTCTCCTATTAAC+TGG | 0.318045 | 1_1:-72424845 | Msa0041850:CDS |
| TGAGAGTTTGGATAAAGTTT+TGG | 0.321510 | 1_1:-72423018 | Msa0041850:CDS |
| TAGGGTTACCTTTCCGATCT+TGG | 0.327646 | 1_1:+72425292 | None:intergenic |
| TGATGACTTTCATCTGTATC+AGG | 0.330426 | 1_1:+72424028 | None:intergenic |
| AAGAGTATTGAGGGAGAAAA+TGG | 0.331424 | 1_1:-72424614 | Msa0041850:CDS |
| GAGGAAAATTAAGATGCTTC+AGG | 0.332559 | 1_1:-72424790 | Msa0041850:intron |
| GTCTTTCATTCTAGGCTGCC+TGG | 0.353720 | 1_1:-72422546 | Msa0041850:intron |
| CTTGGAGACACCAGGCTTCA+TGG | 0.355841 | 1_1:+72422719 | None:intergenic |
| CTTGCTGGAAAATTAATTGC+TGG | 0.359085 | 1_1:+72423713 | None:intergenic |
| TCTCATATTCAGGAAGTAGA+TGG | 0.359391 | 1_1:-72424688 | Msa0041850:intron |
| TCTCTTTCCAATCTGTGTAC+TGG | 0.361707 | 1_1:+72423125 | None:intergenic |
| AGAAGGAGAAAATGAAGTTC+GGG | 0.361814 | 1_1:-72422974 | Msa0041850:CDS |
| ACCTCGCGGCGCGTAAAATT+CGG | 0.362205 | 1_1:+72424524 | None:intergenic |
| AACAACATTTACATATTCAA+TGG | 0.367882 | 1_1:+72422450 | None:intergenic |
| AATGACGACATTCTTCTTGC+TGG | 0.390183 | 1_1:+72423698 | None:intergenic |
| TGGTGGTCTGGACCAAGTTT+TGG | 0.394084 | 1_1:-72422886 | Msa0041850:CDS |
| ATTGGAAAGAGAGAAGTTAC+AGG | 0.401255 | 1_1:-72423114 | Msa0041850:CDS |
| AAAAGTTATCGTCACAAATC+AGG | 0.404328 | 1_1:-72424881 | Msa0041850:CDS |
| ACAATGCTTCTTTGGACAAT+CGG | 0.405172 | 1_1:+72424240 | None:intergenic |
| AGCAAGAAGAATGTCGTCAT+TGG | 0.406742 | 1_1:-72423696 | Msa0041850:CDS |
| TGGAAAATTAATTGCTGGAT+TGG | 0.407077 | 1_1:+72423718 | None:intergenic |
| AACCTTGTCTTGTTCAAGCT+TGG | 0.407936 | 1_1:+72422701 | None:intergenic |
| GAGGTAGGAGAACGAGGAAG+AGG | 0.408997 | 1_1:+72425326 | None:intergenic |
| TTGTCTCCAAACGGTTGTTT+CGG | 0.409432 | 1_1:+72422922 | None:intergenic |
| AATTCATCTTTACTAAATGA+AGG | 0.411210 | 1_1:+72424082 | None:intergenic |
| GATTCCAAGATATCATTTCC+AGG | 0.413402 | 1_1:-72423917 | Msa0041850:CDS |
| CTCACAATCCGCCACATTAG+TGG | 0.415788 | 1_1:+72423037 | None:intergenic |
| ACCAGAATACTTCCCAAATC+AGG | 0.421631 | 1_1:+72423464 | None:intergenic |
| GGAAAATTAATTGCTGGATT+GGG | 0.421777 | 1_1:+72423719 | None:intergenic |
| TTGTTTCATTATCATTCCTA+TGG | 0.423963 | 1_1:+72423543 | None:intergenic |
| AATCCCTGGAAATGATATCT+TGG | 0.433501 | 1_1:+72423913 | None:intergenic |
| TGTGGCGGATTGTGAGAGTT+TGG | 0.433589 | 1_1:-72423030 | Msa0041850:CDS |
| TTATGGTTTAAATGCTGCAT+TGG | 0.435226 | 1_1:-72423765 | Msa0041850:CDS |
| CTGCTTTGGTGGAGGCATCT+TGG | 0.435917 | 1_1:-72424549 | Msa0041850:CDS |
| GGTAAAGCCAGTACACAGAT+TGG | 0.437713 | 1_1:-72423132 | Msa0041850:CDS |
| TGAAGAAGGTGGTGGTGGTC+TGG | 0.438089 | 1_1:-72422898 | Msa0041850:CDS |
| AATGAAGTTCGGGGATGAAT+GGG | 0.438179 | 1_1:-72422964 | Msa0041850:CDS |
| TCGGAGTGCATACCTGATTT+GGG | 0.438474 | 1_1:-72423476 | Msa0041850:CDS |
| ATGATAGAGGAAAACATTGA+TGG | 0.441913 | 1_1:-72423170 | Msa0041850:CDS |
| AGAGAGAGTTGGAAGAAGCC+TGG | 0.442819 | 1_1:-72422764 | Msa0041850:CDS |
| CAATGCTTCTTTGGACAATC+GGG | 0.443605 | 1_1:+72424241 | None:intergenic |
| TGAAGGGCGTGTTGCAAGCT+TGG | 0.443827 | 1_1:+72424099 | None:intergenic |
| CTTCTTCATTTGTCTCCAAA+CGG | 0.447190 | 1_1:+72422913 | None:intergenic |
| CGAAGATGAACTTTCTTCAC+TGG | 0.450063 | 1_1:-72423804 | Msa0041850:CDS |
| AAGTGCAACTGAAGCTTTCG+AGG | 0.450166 | 1_1:-72424299 | Msa0041850:CDS |
| GAGAGAGTTGGAAGAAGCCT+GGG | 0.453084 | 1_1:-72422763 | Msa0041850:CDS |
| AAATGAAGTTCGGGGATGAA+TGG | 0.455357 | 1_1:-72422965 | Msa0041850:CDS |
| GGAGGCTCGAAGAACTGCTT+TGG | 0.458895 | 1_1:-72424563 | Msa0041850:CDS |
| GAGAAGGAGAAAATGAAGTT+CGG | 0.459404 | 1_1:-72422975 | Msa0041850:CDS |
| TTTCGAGGCAGCTGAGGCTA+TGG | 0.459678 | 1_1:-72424284 | Msa0041850:CDS |
| ACACGTCTCAAGACTTGAAA+AGG | 0.460348 | 1_1:-72423297 | Msa0041850:CDS |
| TATAAATTTGAATATGATAG+AGG | 0.460587 | 1_1:-72423183 | Msa0041850:CDS |
| TTGACGCTTGATCAGACTCT+TGG | 0.460929 | 1_1:-72424658 | Msa0041850:CDS |
| ACGAGGAAGAGGAGGAGAAT+CGG | 0.462914 | 1_1:+72425337 | None:intergenic |
| ATACTAGCCCCTCTCAAACT+TGG | 0.464721 | 1_1:-72422351 | Msa0041850:three_prime_UTR |
| TGATCCTTCTCCATTAATAG+AGG | 0.474527 | 1_1:+72424204 | None:intergenic |
| CGCATTATTCAAGAGTATTG+AGG | 0.475279 | 1_1:-72424624 | Msa0041850:CDS |
| GGCTCGAAGAACTGCTTTGG+TGG | 0.478001 | 1_1:-72424560 | Msa0041850:CDS |
| TGAGCTTCTGCTTCATCACT+AGG | 0.478022 | 1_1:+72424340 | None:intergenic |
| TCCTAAGCTCAGTCCTCCCC+AGG | 0.483030 | 1_1:+72422746 | None:intergenic |
| AGAGGAAAACATTGATGGGT+TGG | 0.485344 | 1_1:-72423165 | Msa0041850:CDS |
| CTCAGCTTCAGCTTTAATCC+AGG | 0.486257 | 1_1:+72422528 | None:intergenic |
| GTAGGAGAACGAGGAAGAGG+AGG | 0.488886 | 1_1:+72425329 | None:intergenic |
| TGAACTCAAGTCCGAAGACT+TGG | 0.489746 | 1_1:-72423939 | Msa0041850:CDS |
| TAATGCTTCACCAGAAGAAA+AGG | 0.490641 | 1_1:+72423220 | None:intergenic |
| AGCTCTTGTAAATCTGTTGA+TGG | 0.490869 | 1_1:-72423506 | Msa0041850:CDS |
| GCAAGAAGAATGTCGTCATT+GGG | 0.491869 | 1_1:-72423695 | Msa0041850:CDS |
| AAGTTATCCACGCAATGTGC+TGG | 0.496221 | 1_1:+72422285 | None:intergenic |
| AATTGCTGGATTGGGCTGCT+TGG | 0.499178 | 1_1:+72423727 | None:intergenic |
| CAAGGCAAGGGAGAGAGAGT+TGG | 0.500413 | 1_1:-72422775 | Msa0041850:CDS |
| TATCTTGGAATCCAAGTCTT+CGG | 0.500436 | 1_1:+72423928 | None:intergenic |
| GCATTATTCAAGAGTATTGA+GGG | 0.503484 | 1_1:-72424623 | Msa0041850:CDS |
| AAGACTTGAAAAGGAAGTTC+AGG | 0.505605 | 1_1:-72423288 | Msa0041850:CDS |
| TGAAAGTCATCAGGACTTAA+CGG | 0.511572 | 1_1:-72424017 | Msa0041850:CDS |
| ACTAAGACCTTGTCTAAGCC+TGG | 0.511721 | 1_1:+72423323 | None:intergenic |
| ACAGAGTAACTGAGAAACTT+TGG | 0.512047 | 1_1:+72425505 | None:intergenic |
| CATTTCCAGGGATTATTGAA+AGG | 0.513095 | 1_1:-72423904 | Msa0041850:CDS |
| TGTTCAAGCTTGGAGACACC+AGG | 0.514480 | 1_1:+72422711 | None:intergenic |
| CTTTCTCGATGTTCCATCCA+AGG | 0.515891 | 1_1:+72423658 | None:intergenic |
| CTGTGGCTCGACGCAAGGCA+AGG | 0.519812 | 1_1:-72422788 | Msa0041850:CDS |
| GGATTATTGAAAGGAAAAGT+AGG | 0.522151 | 1_1:-72423895 | Msa0041850:CDS |
| CAGACTTGAGAGGGAAAAGA+TGG | 0.523808 | 1_1:-72422850 | Msa0041850:CDS |
| TCAATACTCTTGAATAATGC+GGG | 0.525190 | 1_1:+72424626 | None:intergenic |
| AGCTAGAGAAGCAGCACACA+AGG | 0.526135 | 1_1:-72424590 | Msa0041850:CDS |
| TGAAAATAGAATAAAACTTG+TGG | 0.526849 | 1_1:-72423858 | Msa0041850:CDS |
| CTTGGATGGAACATCGAGAA+AGG | 0.529370 | 1_1:-72423657 | Msa0041850:CDS |
| TGATACAGATGAAAGTCATC+AGG | 0.531714 | 1_1:-72424026 | Msa0041850:CDS |
| GCCTGGGGAGGACTGAGCTT+AGG | 0.533346 | 1_1:-72422747 | Msa0041850:CDS |
| AAGTCACCGAAACAACCGTT+TGG | 0.536970 | 1_1:-72422928 | Msa0041850:CDS |
| GACTTCTTTGTCTACATCAA+AGG | 0.537885 | 1_1:+72424147 | None:intergenic |
| CTCATATTCAGGAAGTAGAT+GGG | 0.539202 | 1_1:-72424687 | Msa0041850:intron |
| ATTCATCTTTACTAAATGAA+GGG | 0.540162 | 1_1:+72424083 | None:intergenic |
| TCGAAGAACTGCTTTGGTGG+AGG | 0.540303 | 1_1:-72424557 | Msa0041850:CDS |
| TTCGAGGCAGCTGAGGCTAT+GGG | 0.544887 | 1_1:-72424283 | Msa0041850:CDS |
| ACATAAATCCAGACTTGAGA+GGG | 0.547084 | 1_1:-72422859 | Msa0041850:CDS |
| CTCAATACTCTTGAATAATG+CGG | 0.547525 | 1_1:+72424625 | None:intergenic |
| TTGCGAAAGTCAGCCTTGGA+TGG | 0.549215 | 1_1:-72423671 | Msa0041850:CDS |
| TTAGGAAACTCCATGAAGCC+TGG | 0.549917 | 1_1:-72422729 | Msa0041850:CDS |
| AGAAGCAGCACACAAGGCAA+TGG | 0.550484 | 1_1:-72424584 | Msa0041850:CDS |
| GGGATTGCGAAAGTCAGCCT+TGG | 0.552736 | 1_1:-72423675 | Msa0041850:CDS |
| ATCTGTTGATGGAACTCCAT+CGG | 0.553036 | 1_1:-72423495 | Msa0041850:CDS |
| ACAAATGAAGAAGGTGGTGG+TGG | 0.556403 | 1_1:-72422903 | Msa0041850:CDS |
| GATGACTTTCATCTGTATCA+GGG | 0.556725 | 1_1:+72424029 | None:intergenic |
| AAGAGGAGGAGAATCGGAAT+CGG | 0.556799 | 1_1:+72425343 | None:intergenic |
| TAATGAAACAAAATTAGGTA+AGG | 0.560990 | 1_1:-72423531 | Msa0041850:CDS |
| TGTGGCTCGACGCAAGGCAA+GGG | 0.561334 | 1_1:-72422787 | Msa0041850:CDS |
| AAGTCAGCAAAGGAAATGCT+AGG | 0.566016 | 1_1:-72423392 | Msa0041850:CDS |
| TGATAGAGGAAAACATTGAT+GGG | 0.566252 | 1_1:-72423169 | Msa0041850:CDS |
| ATTCCAAGATATCATTTCCA+GGG | 0.570612 | 1_1:-72423916 | Msa0041850:CDS |
| AACGAAAACCAAGTTTGAGA+GGG | 0.578093 | 1_1:+72422343 | None:intergenic |
| ACACCCTCTATTAATGGAGA+AGG | 0.578628 | 1_1:-72424208 | Msa0041850:CDS |
| TTAGGTCAATCTACATCAAG+TGG | 0.579696 | 1_1:-72424909 | Msa0041850:CDS |
| GGAACATCGAGAAAGGATCA+TGG | 0.579814 | 1_1:-72423650 | Msa0041850:CDS |
| ATTTCGACCAGCACATTGCG+TGG | 0.580499 | 1_1:-72422292 | Msa0041850:three_prime_UTR |
| TCGGTGGAGTGATTCGTTGA+CGG | 0.581185 | 1_1:+72425362 | None:intergenic |
| AAGTGGATTCCTTCTTGGAG+AGG | 0.582173 | 1_1:-72424809 | Msa0041850:CDS |
| TTTGAGAATGAAGAGAACGA+TGG | 0.583104 | 1_1:+72425472 | None:intergenic |
| AAATCAGGTATGCACTCCGA+TGG | 0.585588 | 1_1:+72423479 | None:intergenic |
| TCCTCTGTCAGATCCAAGAT+CGG | 0.585811 | 1_1:-72425305 | Msa0041850:CDS |
| CTCCAAGCTTGAACAAGACA+AGG | 0.587799 | 1_1:-72422703 | Msa0041850:intron |
| TTAAAGCTGAAGCTGAGGAA+AGG | 0.588751 | 1_1:-72422522 | Msa0041850:CDS |
| AGCAGCACACAAGGCAATGG+AGG | 0.589770 | 1_1:-72424581 | Msa0041850:CDS |
| AGGAGGAGAATCGGAATCGG+TGG | 0.591234 | 1_1:+72425346 | None:intergenic |
| CGTTTGGAGACAAATGAAGA+AGG | 0.596460 | 1_1:-72422912 | Msa0041850:CDS |
| GCGCGTATCTAGGCTAGAGA+AGG | 0.598756 | 1_1:-72422991 | Msa0041850:CDS |
| AAACGAAAACCAAGTTTGAG+AGG | 0.607892 | 1_1:+72422342 | None:intergenic |
| TACAGACAAAGAAAGAGTCA+TGG | 0.609998 | 1_1:-72423062 | Msa0041850:CDS |
| AGCAAAGATTAAGTCAGCAA+AGG | 0.612039 | 1_1:-72423402 | Msa0041850:CDS |
| TCCGATCTTGGATCTGACAG+AGG | 0.612104 | 1_1:+72425304 | None:intergenic |
| AACATAAATCCAGACTTGAG+AGG | 0.616446 | 1_1:-72422860 | Msa0041850:CDS |
| CTGGATTAAAGCTGAAGCTG+AGG | 0.623687 | 1_1:-72422527 | Msa0041850:CDS |
| TGAAGCTTTCGAGGCAGCTG+AGG | 0.626348 | 1_1:-72424290 | Msa0041850:CDS |
| TTGGATCTGACAGAGGAGGT+AGG | 0.627509 | 1_1:+72425311 | None:intergenic |
| GATCCTTCTCCATTAATAGA+GGG | 0.628940 | 1_1:+72424205 | None:intergenic |
| ACAGAGGAGGTAGGAGAACG+AGG | 0.631376 | 1_1:+72425320 | None:intergenic |
| AAAGATCACACAGAAGTACC+AGG | 0.634275 | 1_1:-72423341 | Msa0041850:CDS |
| AATATGATAAGTTGATAACA+AGG | 0.637873 | 1_1:-72422482 | Msa0041850:exon |
| CATGACAAGACTTGAAAGAG+AGG | 0.639854 | 1_1:-72423585 | Msa0041850:CDS |
| ATGAAGTTCGGGGATGAATG+GGG | 0.640238 | 1_1:-72422963 | Msa0041850:CDS |
| GAGTCATGGAGCCACTAATG+TGG | 0.641853 | 1_1:-72423048 | Msa0041850:CDS |
| GAGACAAATGAAGAAGGTGG+TGG | 0.652713 | 1_1:-72422906 | Msa0041850:CDS |
| TGAGGAAAGGAATCAAGCAA+CGG | 0.654950 | 1_1:-72422509 | Msa0041850:CDS |
| GAAGGAGAAAATGAAGTTCG+GGG | 0.658054 | 1_1:-72422973 | Msa0041850:CDS |
| TCATGGAGCCACTAATGTGG+CGG | 0.660737 | 1_1:-72423045 | Msa0041850:CDS |
| GCATCAAGTGGCATGCCTAG+AGG | 0.661243 | 1_1:-72423368 | Msa0041850:CDS |
| GAGTTGGAAGAAGCCTGGGG+AGG | 0.665105 | 1_1:-72422759 | Msa0041850:CDS |
| TTGGAGACAAATGAAGAAGG+TGG | 0.672134 | 1_1:-72422909 | Msa0041850:CDS |
| AGAGAGTTGGAAGAAGCCTG+GGG | 0.672942 | 1_1:-72422762 | Msa0041850:CDS |
| TGTCAGATCCAAGATCGGAA+AGG | 0.677182 | 1_1:-72425300 | Msa0041850:intron |
| TGTGCAGAATAAATTGACGA+AGG | 0.678945 | 1_1:-72424934 | Msa0041850:intron |
| ACGAAAACCAAGTTTGAGAG+GGG | 0.683688 | 1_1:+72422344 | None:intergenic |
| AGAAGTACCAGGCTTAGACA+AGG | 0.689413 | 1_1:-72423330 | Msa0041850:CDS |
| GATCTTGGATCTGACAGAGG+AGG | 0.695341 | 1_1:+72425307 | None:intergenic |
| GAAATGCTAGGAGCATCAAG+TGG | 0.709128 | 1_1:-72423380 | Msa0041850:CDS |
| TTGTGGATATGATGATTGAG+CGG | 0.720856 | 1_1:-72423841 | Msa0041850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCATAAAATTGATATTTA+AGG | + | chr1_1:72422568-72422587 | None:intergenic | 10.0% |
| !! | TTATATTTATAAAGCTAAAT+TGG | - | chr1_1:72422768-72422787 | Msa0041850:CDS | 10.0% |
| !!! | AAAAGAAAAAACTTTAAAAT+GGG | + | chr1_1:72425188-72425207 | None:intergenic | 10.0% |
| !!! | AAAAAGAAAAAACTTTAAAA+TGG | + | chr1_1:72425189-72425208 | None:intergenic | 10.0% |
| !!! | AAATATAGTTTTCATTATAA+AGG | + | chr1_1:72425513-72425532 | None:intergenic | 10.0% |
| !!! | CAATAATACATTATCATTTT+CGG | - | chr1_1:72422382-72422401 | Msa0041850:three_prime_UTR | 15.0% |
| !! | TAAAATTGATATTTAAGGAA+TGG | + | chr1_1:72422563-72422582 | None:intergenic | 15.0% |
| !!! | AATGATAATGAAACAAAATT+AGG | - | chr1_1:72424285-72424304 | Msa0041850:CDS | 15.0% |
| !! | TATAAATTTGAATATGATAG+AGG | - | chr1_1:72424638-72424657 | Msa0041850:CDS | 15.0% |
| !! | AAAAAAAAATTGTTGCATAT+TGG | - | chr1_1:72425437-72425456 | Msa0041850:five_prime_UTR | 15.0% |
| !!! | CGAAAATGATAATGTATTAT+TGG | + | chr1_1:72422384-72422403 | None:intergenic | 20.0% |
| !! | AATTGAAACTCATCAATTTA+GGG | + | chr1_1:72422624-72422643 | None:intergenic | 20.0% |
| !! | AATATAACAAGTAATCTCTA+AGG | + | chr1_1:72422755-72422774 | None:intergenic | 20.0% |
| !! | AAGCTTAATGCAAATAAAAT+AGG | - | chr1_1:72423321-72423340 | Msa0041850:CDS | 20.0% |
| !! | ATGATTTACAATTTGAAAAC+AGG | - | chr1_1:72423376-72423395 | Msa0041850:CDS | 20.0% |
| !! | ATTCATCTTTACTAAATGAA+GGG | + | chr1_1:72423741-72423760 | None:intergenic | 20.0% |
| !! | AATTCATCTTTACTAAATGA+AGG | + | chr1_1:72423742-72423761 | None:intergenic | 20.0% |
| !! | TGAAAATAGAATAAAACTTG+TGG | - | chr1_1:72423963-72423982 | Msa0041850:CDS | 20.0% |
| !! | GCTTAACTAAAAATTTATCT+AGG | + | chr1_1:72424215-72424234 | None:intergenic | 20.0% |
| !! | TAATGAAACAAAATTAGGTA+AGG | - | chr1_1:72424290-72424309 | Msa0041850:CDS | 20.0% |
| !!! | ATTTATGTTTTACCAAAACT+TGG | + | chr1_1:72424950-72424969 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTTTTTGCTTTTC+TGG | - | chr1_1:72425199-72425218 | Msa0041850:intron | 20.0% |
| !!! | AATATGATAAGTTGATAACA+AGG | - | chr1_1:72425339-72425358 | Msa0041850:CDS | 20.0% |
| !! | AACAACATTTACATATTCAA+TGG | + | chr1_1:72425374-72425393 | None:intergenic | 20.0% |
| !! | GTAATCAGAATTTTCAACAA+TGG | - | chr1_1:72422416-72422435 | Msa0041850:three_prime_UTR | 25.0% |
| ! | AATTGATATTTAAGGAATGG+TGG | + | chr1_1:72422560-72422579 | None:intergenic | 25.0% |
| !!! | ATCAATTTAGGGTTTTGAAT+CGG | + | chr1_1:72422613-72422632 | None:intergenic | 25.0% |
| ! | CAATTGAAACTCATCAATTT+AGG | + | chr1_1:72422625-72422644 | None:intergenic | 25.0% |
| ! | AACAAACTATGATCTATATC+TGG | + | chr1_1:72422658-72422677 | None:intergenic | 25.0% |
| ! | AATAAATTGACGAAGGAATT+AGG | - | chr1_1:72422894-72422913 | Msa0041850:CDS | 25.0% |
| !! | AGTTAATAGGAGAAGTTTTA+CGG | + | chr1_1:72422977-72422996 | None:intergenic | 25.0% |
| ! | TTAATGCAAATAAAATAGGC+TGG | - | chr1_1:72423325-72423344 | Msa0041850:CDS | 25.0% |
| ! | TTTGTCACATAACATTCAAT+TGG | + | chr1_1:72423405-72423424 | None:intergenic | 25.0% |
| !! | CTGAAAACCAACAATTTTAT+TGG | - | chr1_1:72423445-72423464 | Msa0041850:CDS | 25.0% |
| ! | GAAAACACCAATAAAATTGT+TGG | + | chr1_1:72423455-72423474 | None:intergenic | 25.0% |
| !!! | ACAATTTTATTGGTGTTTTC+AGG | - | chr1_1:72423455-72423474 | Msa0041850:CDS | 25.0% |
| ! | ACTAAAAATTTATCTAGGCT+TGG | + | chr1_1:72424210-72424229 | None:intergenic | 25.0% |
| ! | TTGTTTCATTATCATTCCTA+TGG | + | chr1_1:72424281-72424300 | None:intergenic | 25.0% |
| !! | TTTCAAACTTTTGTTCTCAT+TGG | + | chr1_1:72424577-72424596 | None:intergenic | 25.0% |
| !!! | TAAGTTGATAACAAGGAATT+TGG | - | chr1_1:72425346-72425365 | Msa0041850:CDS | 25.0% |
| ! | ATATTTAAGGAATGGTGGAA+TGG | + | chr1_1:72422555-72422574 | None:intergenic | 30.0% |
| ! | TTGATAGTTTAGGGACTAAA+TGG | - | chr1_1:72422798-72422817 | Msa0041850:CDS | 30.0% |
| AAAAGTTATCGTCACAAATC+AGG | - | chr1_1:72422940-72422959 | Msa0041850:CDS | 30.0% | |
| GTAAAACTTCTCCTATTAAC+TGG | - | chr1_1:72422976-72422995 | Msa0041850:CDS | 30.0% | |
| ! | AAATTAAGATGCTTCAGGTT+TGG | - | chr1_1:72423036-72423055 | Msa0041850:CDS | 30.0% |
| GATATACGTTTCTCATATTC+AGG | - | chr1_1:72423123-72423142 | Msa0041850:CDS | 30.0% | |
| TCAATACTCTTGAATAATGC+GGG | + | chr1_1:72423198-72423217 | None:intergenic | 30.0% | |
| CTCAATACTCTTGAATAATG+CGG | + | chr1_1:72423199-72423218 | None:intergenic | 30.0% | |
| !! | GCATTATTCAAGAGTATTGA+GGG | - | chr1_1:72423198-72423217 | Msa0041850:CDS | 30.0% |
| TCTATTTGACAATGCTTCTT+TGG | + | chr1_1:72423592-72423611 | None:intergenic | 30.0% | |
| ATTCCAAGATATCATTTCCA+GGG | - | chr1_1:72423905-72423924 | Msa0041850:CDS | 30.0% | |
| GGATTATTGAAAGGAAAAGT+AGG | - | chr1_1:72423926-72423945 | Msa0041850:CDS | 30.0% | |
| TTATGGTTTAAATGCTGCAT+TGG | - | chr1_1:72424056-72424075 | Msa0041850:CDS | 30.0% | |
| GGAAAATTAATTGCTGGATT+GGG | + | chr1_1:72424105-72424124 | None:intergenic | 30.0% | |
| TGGAAAATTAATTGCTGGAT+TGG | + | chr1_1:72424106-72424125 | None:intergenic | 30.0% | |
| ! | ATCATTCCTATGGTTTTTCT+TGG | + | chr1_1:72424271-72424290 | None:intergenic | 30.0% |
| ATGATAGAGGAAAACATTGA+TGG | - | chr1_1:72424651-72424670 | Msa0041850:CDS | 30.0% | |
| TGATAGAGGAAAACATTGAT+GGG | - | chr1_1:72424652-72424671 | Msa0041850:CDS | 30.0% | |
| !! | AAGTTACAGGTTTTATCACA+GGG | - | chr1_1:72424720-72424739 | Msa0041850:intron | 30.0% |
| ! | TGAGAGTTTGGATAAAGTTT+TGG | - | chr1_1:72424803-72424822 | Msa0041850:CDS | 30.0% |
| !!! | TAATCCAGTTAGTTTTTCTG+TGG | - | chr1_1:72425016-72425035 | Msa0041850:intron | 30.0% |
| !! | TTTAGTGTTGTTTGACACTT+TGG | - | chr1_1:72425145-72425164 | Msa0041850:intron | 30.0% |
| ACAGAGTAACTGAGAAACTT+TGG | + | chr1_1:72422319-72422338 | None:intergenic | 35.0% | |
| TTTGAGAATGAAGAGAACGA+TGG | + | chr1_1:72422352-72422371 | None:intergenic | 35.0% | |
| !! | TGGAGAGATGTTGATAGTTT+AGG | - | chr1_1:72422788-72422807 | Msa0041850:CDS | 35.0% |
| !! | GGAGAGATGTTGATAGTTTA+GGG | - | chr1_1:72422789-72422808 | Msa0041850:CDS | 35.0% |
| TAGTTTAGGGACTAAATGGA+TGG | - | chr1_1:72422802-72422821 | Msa0041850:CDS | 35.0% | |
| TGTGCAGAATAAATTGACGA+AGG | - | chr1_1:72422887-72422906 | Msa0041850:CDS | 35.0% | |
| TTAGGTCAATCTACATCAAG+TGG | - | chr1_1:72422912-72422931 | Msa0041850:CDS | 35.0% | |
| ! | CAAAAAAGTGGATTCCTTCT+TGG | - | chr1_1:72423007-72423026 | Msa0041850:CDS | 35.0% |
| ! | CTTAATTTTCCTCTCCAAGA+AGG | + | chr1_1:72423024-72423043 | None:intergenic | 35.0% |
| GAGGAAAATTAAGATGCTTC+AGG | - | chr1_1:72423031-72423050 | Msa0041850:CDS | 35.0% | |
| TCTCATATTCAGGAAGTAGA+TGG | - | chr1_1:72423133-72423152 | Msa0041850:CDS | 35.0% | |
| CTCATATTCAGGAAGTAGAT+GGG | - | chr1_1:72423134-72423153 | Msa0041850:CDS | 35.0% | |
| !! | CGCATTATTCAAGAGTATTG+AGG | - | chr1_1:72423197-72423216 | Msa0041850:CDS | 35.0% |
| !! | AAGAGTATTGAGGGAGAAAA+TGG | - | chr1_1:72423207-72423226 | Msa0041850:CDS | 35.0% |
| AGCAGAAGCTCAACTATTAA+AGG | - | chr1_1:72423492-72423511 | Msa0041850:CDS | 35.0% | |
| ACAATGCTTCTTTGGACAAT+CGG | + | chr1_1:72423584-72423603 | None:intergenic | 35.0% | |
| ATAGAGACACCCTCTATTAA+TGG | - | chr1_1:72423607-72423626 | Msa0041850:CDS | 35.0% | |
| GATCCTTCTCCATTAATAGA+GGG | + | chr1_1:72423619-72423638 | None:intergenic | 35.0% | |
| TGATCCTTCTCCATTAATAG+AGG | + | chr1_1:72423620-72423639 | None:intergenic | 35.0% | |
| GACTTCTTTGTCTACATCAA+AGG | + | chr1_1:72423677-72423696 | None:intergenic | 35.0% | |
| GATGACTTTCATCTGTATCA+GGG | + | chr1_1:72423795-72423814 | None:intergenic | 35.0% | |
| TGATGACTTTCATCTGTATC+AGG | + | chr1_1:72423796-72423815 | None:intergenic | 35.0% | |
| TGATACAGATGAAAGTCATC+AGG | - | chr1_1:72423795-72423814 | Msa0041850:CDS | 35.0% | |
| TGAAAGTCATCAGGACTTAA+CGG | - | chr1_1:72423804-72423823 | Msa0041850:CDS | 35.0% | |
| TATCTTGGAATCCAAGTCTT+CGG | + | chr1_1:72423896-72423915 | None:intergenic | 35.0% | |
| GATTCCAAGATATCATTTCC+AGG | - | chr1_1:72423904-72423923 | Msa0041850:CDS | 35.0% | |
| AATCCCTGGAAATGATATCT+TGG | + | chr1_1:72423911-72423930 | None:intergenic | 35.0% | |
| CATTTCCAGGGATTATTGAA+AGG | - | chr1_1:72423917-72423936 | Msa0041850:CDS | 35.0% | |
| ! | CTTTTCCTTTCAATAATCCC+TGG | + | chr1_1:72423925-72423944 | None:intergenic | 35.0% |
| TTGTGGATATGATGATTGAG+CGG | - | chr1_1:72423980-72423999 | Msa0041850:CDS | 35.0% | |
| GCAACTATAGTTGCAACTTA+TGG | - | chr1_1:72424039-72424058 | Msa0041850:CDS | 35.0% | |
| CTTGCTGGAAAATTAATTGC+TGG | + | chr1_1:72424111-72424130 | None:intergenic | 35.0% | |
| AGCTCTTGTAAATCTGTTGA+TGG | - | chr1_1:72424315-72424334 | Msa0041850:CDS | 35.0% | |
| AGCAAAGATTAAGTCAGCAA+AGG | - | chr1_1:72424419-72424438 | Msa0041850:intron | 35.0% | |
| ! | GTACTTCTGTGTGATCTTTT+TGG | + | chr1_1:72424479-72424498 | None:intergenic | 35.0% |
| AAGACTTGAAAAGGAAGTTC+AGG | - | chr1_1:72424533-72424552 | Msa0041850:CDS | 35.0% | |
| ! | TTGAAATCGACCTTTTCTTC+TGG | - | chr1_1:72424591-72424610 | Msa0041850:CDS | 35.0% |
| TAATGCTTCACCAGAAGAAA+AGG | + | chr1_1:72424604-72424623 | None:intergenic | 35.0% | |
| ATTGGAAAGAGAGAAGTTAC+AGG | - | chr1_1:72424707-72424726 | Msa0041850:intron | 35.0% | |
| !! | GAAGTTACAGGTTTTATCAC+AGG | - | chr1_1:72424719-72424738 | Msa0041850:intron | 35.0% |
| ! | TTTGTCTGTAGTTTTCGACT+CGG | + | chr1_1:72424749-72424768 | None:intergenic | 35.0% |
| TACAGACAAAGAAAGAGTCA+TGG | - | chr1_1:72424759-72424778 | Msa0041850:intron | 35.0% | |
| GAGAAGGAGAAAATGAAGTT+CGG | - | chr1_1:72424846-72424865 | Msa0041850:CDS | 35.0% | |
| AGAAGGAGAAAATGAAGTTC+GGG | - | chr1_1:72424847-72424866 | Msa0041850:CDS | 35.0% | |
| CTTCTTCATTTGTCTCCAAA+CGG | + | chr1_1:72424911-72424930 | None:intergenic | 35.0% | |
| AACATAAATCCAGACTTGAG+AGG | - | chr1_1:72424961-72424980 | Msa0041850:intron | 35.0% | |
| ACATAAATCCAGACTTGAGA+GGG | - | chr1_1:72424962-72424981 | Msa0041850:intron | 35.0% | |
| CTAGAATGAAAGACAAAGAC+AGG | + | chr1_1:72425269-72425288 | None:intergenic | 35.0% | |
| CTGTCTTTGTCTTTCATTCT+AGG | - | chr1_1:72425267-72425286 | Msa0041850:intron | 35.0% | |
| AACGAAAACCAAGTTTGAGA+GGG | + | chr1_1:72425481-72425500 | None:intergenic | 35.0% | |
| AAACGAAAACCAAGTTTGAG+AGG | + | chr1_1:72425482-72425501 | None:intergenic | 35.0% | |
| ! | TAAGGAATGGTGGAATGGTA+GGG | + | chr1_1:72422550-72422569 | None:intergenic | 40.0% |
| ! | TTAAGGAATGGTGGAATGGT+AGG | + | chr1_1:72422551-72422570 | None:intergenic | 40.0% |
| !!! | GGGTTTTGAATCGGTAAACA+AGG | + | chr1_1:72422604-72422623 | None:intergenic | 40.0% |
| !!! | AAGGAATCCACTTTTTTGCG+CGG | + | chr1_1:72423005-72423024 | None:intergenic | 40.0% |
| TTGCATTAAGCTTTACCTCG+CGG | + | chr1_1:72423314-72423333 | None:intergenic | 40.0% | |
| ATAGGCTGGACATTAGTTGA+CGG | - | chr1_1:72423339-72423358 | Msa0041850:CDS | 40.0% | |
| CAATGCTTCTTTGGACAATC+GGG | + | chr1_1:72423583-72423602 | None:intergenic | 40.0% | |
| ACACCCTCTATTAATGGAGA+AGG | - | chr1_1:72423613-72423632 | Msa0041850:CDS | 40.0% | |
| ! | GGACTTGAGTTCACTCTTTT+GGG | + | chr1_1:72423875-72423894 | None:intergenic | 40.0% |
| CGAAGATGAACTTTCTTCAC+TGG | - | chr1_1:72424017-72424036 | Msa0041850:CDS | 40.0% | |
| AATGACGACATTCTTCTTGC+TGG | + | chr1_1:72424126-72424145 | None:intergenic | 40.0% | |
| AGCAAGAAGAATGTCGTCAT+TGG | - | chr1_1:72424125-72424144 | Msa0041850:CDS | 40.0% | |
| GCAAGAAGAATGTCGTCATT+GGG | - | chr1_1:72424126-72424145 | Msa0041850:CDS | 40.0% | |
| CATGACAAGACTTGAAAGAG+AGG | - | chr1_1:72424236-72424255 | Msa0041850:CDS | 40.0% | |
| GTGAAGCCAAGAAAAACCAT+AGG | - | chr1_1:72424262-72424281 | Msa0041850:CDS | 40.0% | |
| ! | ATCTGTTGATGGAACTCCAT+CGG | - | chr1_1:72424326-72424345 | Msa0041850:CDS | 40.0% |
| !! | ACCTGATTTGGGAAGTATTC+TGG | - | chr1_1:72424356-72424375 | Msa0041850:intron | 40.0% |
| ACCAGAATACTTCCCAAATC+AGG | + | chr1_1:72424360-72424379 | None:intergenic | 40.0% | |
| AAGTCAGCAAAGGAAATGCT+AGG | - | chr1_1:72424429-72424448 | Msa0041850:intron | 40.0% | |
| !! | AAAGATCACACAGAAGTACC+AGG | - | chr1_1:72424480-72424499 | Msa0041850:intron | 40.0% |
| ACACGTCTCAAGACTTGAAA+AGG | - | chr1_1:72424524-72424543 | Msa0041850:intron | 40.0% | |
| ! | AGAGGAAAACATTGATGGGT+TGG | - | chr1_1:72424656-72424675 | Msa0041850:CDS | 40.0% |
| !!! | TGATGGGTTGGAGAAGATTT+TGG | - | chr1_1:72424668-72424687 | Msa0041850:CDS | 40.0% |
| TCTCTTTCCAATCTGTGTAC+TGG | + | chr1_1:72424699-72424718 | None:intergenic | 40.0% | |
| !! | TTTTGGTTAAGCGCGTATCT+AGG | - | chr1_1:72424820-72424839 | Msa0041850:CDS | 40.0% |
| GAAGGAGAAAATGAAGTTCG+GGG | - | chr1_1:72424848-72424867 | Msa0041850:CDS | 40.0% | |
| AAATGAAGTTCGGGGATGAA+TGG | - | chr1_1:72424856-72424875 | Msa0041850:CDS | 40.0% | |
| AATGAAGTTCGGGGATGAAT+GGG | - | chr1_1:72424857-72424876 | Msa0041850:CDS | 40.0% | |
| TTGTCTCCAAACGGTTGTTT+CGG | + | chr1_1:72424902-72424921 | None:intergenic | 40.0% | |
| CGTTTGGAGACAAATGAAGA+AGG | - | chr1_1:72424909-72424928 | Msa0041850:CDS | 40.0% | |
| TTGGAGACAAATGAAGAAGG+TGG | - | chr1_1:72424912-72424931 | Msa0041850:CDS | 40.0% | |
| ! | AACCTTGTCTTGTTCAAGCT+TGG | + | chr1_1:72425123-72425142 | None:intergenic | 40.0% |
| TTAAAGCTGAAGCTGAGGAA+AGG | - | chr1_1:72425299-72425318 | Msa0041850:intron | 40.0% | |
| TGAGGAAAGGAATCAAGCAA+CGG | - | chr1_1:72425312-72425331 | Msa0041850:CDS | 40.0% | |
| ACGAAAACCAAGTTTGAGAG+GGG | + | chr1_1:72425480-72425499 | None:intergenic | 40.0% | |
| AAGAGGAGGAGAATCGGAAT+CGG | + | chr1_1:72422481-72422500 | None:intergenic | 45.0% | |
| TCCTCTGTCAGATCCAAGAT+CGG | - | chr1_1:72422516-72422535 | Msa0041850:CDS | 45.0% | |
| TGTCAGATCCAAGATCGGAA+AGG | - | chr1_1:72422521-72422540 | Msa0041850:CDS | 45.0% | |
| TAGGGTTACCTTTCCGATCT+TGG | + | chr1_1:72422532-72422551 | None:intergenic | 45.0% | |
| ! | ATAGGAGAAGTTTTACGGCG+TGG | + | chr1_1:72422972-72422991 | None:intergenic | 45.0% |
| TTGCGCGGAAACCAGTTAAT+AGG | + | chr1_1:72422990-72423009 | None:intergenic | 45.0% | |
| ! | AAGTGGATTCCTTCTTGGAG+AGG | - | chr1_1:72423012-72423031 | Msa0041850:CDS | 45.0% |
| TTGACGCTTGATCAGACTCT+TGG | - | chr1_1:72423163-72423182 | Msa0041850:CDS | 45.0% | |
| TGAGCTTCTGCTTCATCACT+AGG | + | chr1_1:72423484-72423503 | None:intergenic | 45.0% | |
| AAGTGCAACTGAAGCTTTCG+AGG | - | chr1_1:72423522-72423541 | Msa0041850:CDS | 45.0% | |
| !!! | AGTTCACTCTTTTGGGACAC+TGG | + | chr1_1:72423868-72423887 | None:intergenic | 45.0% |
| ! | CGGACTTGAGTTCACTCTTT+TGG | + | chr1_1:72423876-72423895 | None:intergenic | 45.0% |
| TGAACTCAAGTCCGAAGACT+TGG | - | chr1_1:72423882-72423901 | Msa0041850:CDS | 45.0% | |
| CTTTCTCGATGTTCCATCCA+AGG | + | chr1_1:72424166-72424185 | None:intergenic | 45.0% | |
| CTTGGATGGAACATCGAGAA+AGG | - | chr1_1:72424164-72424183 | Msa0041850:CDS | 45.0% | |
| GGAACATCGAGAAAGGATCA+TGG | - | chr1_1:72424171-72424190 | Msa0041850:CDS | 45.0% | |
| AAATCAGGTATGCACTCCGA+TGG | + | chr1_1:72424345-72424364 | None:intergenic | 45.0% | |
| ATCGGAGTGCATACCTGATT+TGG | - | chr1_1:72424344-72424363 | Msa0041850:CDS | 45.0% | |
| TCGGAGTGCATACCTGATTT+GGG | - | chr1_1:72424345-72424364 | Msa0041850:CDS | 45.0% | |
| !! | GAAATGCTAGGAGCATCAAG+TGG | - | chr1_1:72424441-72424460 | Msa0041850:intron | 45.0% |
| !! | GTGTGATCTTTTTGGCCTCT+AGG | + | chr1_1:72424471-72424490 | None:intergenic | 45.0% |
| !! | AGAAGTACCAGGCTTAGACA+AGG | - | chr1_1:72424491-72424510 | Msa0041850:intron | 45.0% |
| ACTAAGACCTTGTCTAAGCC+TGG | + | chr1_1:72424501-72424520 | None:intergenic | 45.0% | |
| ! | CTCATTGGCTGTTCTCTTTC+TGG | + | chr1_1:72424562-72424581 | None:intergenic | 45.0% |
| GGTAAAGCCAGTACACAGAT+TGG | - | chr1_1:72424689-72424708 | Msa0041850:intron | 45.0% | |
| ATGAAGTTCGGGGATGAATG+GGG | - | chr1_1:72424858-72424877 | Msa0041850:CDS | 45.0% | |
| AAGTCACCGAAACAACCGTT+TGG | - | chr1_1:72424893-72424912 | Msa0041850:CDS | 45.0% | |
| GAGACAAATGAAGAAGGTGG+TGG | - | chr1_1:72424915-72424934 | Msa0041850:CDS | 45.0% | |
| ! | ACAAATGAAGAAGGTGGTGG+TGG | - | chr1_1:72424918-72424937 | Msa0041850:CDS | 45.0% |
| ! | CATCTTTTCCCTCTCAAGTC+TGG | + | chr1_1:72424973-72424992 | None:intergenic | 45.0% |
| CAGACTTGAGAGGGAAAAGA+TGG | - | chr1_1:72424971-72424990 | Msa0041850:intron | 45.0% | |
| CGAGCCACAGAAAAACTAAC+TGG | + | chr1_1:72425023-72425042 | None:intergenic | 45.0% | |
| TTAGGAAACTCCATGAAGCC+TGG | - | chr1_1:72425092-72425111 | Msa0041850:intron | 45.0% | |
| CTCCAAGCTTGAACAAGACA+AGG | - | chr1_1:72425118-72425137 | Msa0041850:intron | 45.0% | |
| ! | CTCAGCTTCAGCTTTAATCC+AGG | + | chr1_1:72425296-72425315 | None:intergenic | 45.0% |
| CTGGATTAAAGCTGAAGCTG+AGG | - | chr1_1:72425294-72425313 | Msa0041850:intron | 45.0% | |
| ATACTAGCCCCTCTCAAACT+TGG | - | chr1_1:72425470-72425489 | Msa0041850:five_prime_UTR | 45.0% | |
| TCGGTGGAGTGATTCGTTGA+CGG | + | chr1_1:72422462-72422481 | None:intergenic | 50.0% | |
| ACGAGGAAGAGGAGGAGAAT+CGG | + | chr1_1:72422487-72422506 | None:intergenic | 50.0% | |
| TTGGATCTGACAGAGGAGGT+AGG | + | chr1_1:72422513-72422532 | None:intergenic | 50.0% | |
| GATCTTGGATCTGACAGAGG+AGG | + | chr1_1:72422517-72422536 | None:intergenic | 50.0% | |
| TCCGATCTTGGATCTGACAG+AGG | + | chr1_1:72422520-72422539 | None:intergenic | 50.0% | |
| CTGGTTTCCGCGCAAAAAAG+TGG | - | chr1_1:72422995-72423014 | Msa0041850:CDS | 50.0% | |
| AGCTAGAGAAGCAGCACACA+AGG | - | chr1_1:72423231-72423250 | Msa0041850:CDS | 50.0% | |
| AGAAGCAGCACACAAGGCAA+TGG | - | chr1_1:72423237-72423256 | Msa0041850:CDS | 50.0% | |
| TCGAAGAACTGCTTTGGTGG+AGG | - | chr1_1:72423264-72423283 | Msa0041850:CDS | 50.0% | |
| ! | AATTGCTGGATTGGGCTGCT+TGG | + | chr1_1:72424097-72424116 | None:intergenic | 50.0% |
| TTGCGAAAGTCAGCCTTGGA+TGG | - | chr1_1:72424150-72424169 | Msa0041850:CDS | 50.0% | |
| GAGTCATGGAGCCACTAATG+TGG | - | chr1_1:72424773-72424792 | Msa0041850:intron | 50.0% | |
| TCATGGAGCCACTAATGTGG+CGG | - | chr1_1:72424776-72424795 | Msa0041850:intron | 50.0% | |
| CTCACAATCCGCCACATTAG+TGG | + | chr1_1:72424787-72424806 | None:intergenic | 50.0% | |
| !! | TGTGGCGGATTGTGAGAGTT+TGG | - | chr1_1:72424791-72424810 | Msa0041850:CDS | 50.0% |
| ! | TGGTGGTCTGGACCAAGTTT+TGG | - | chr1_1:72424935-72424954 | Msa0041850:intron | 50.0% |
| ! | TTTTTCTGTGGCTCGACGCA+AGG | - | chr1_1:72425028-72425047 | Msa0041850:intron | 50.0% |
| AGAGAGAGTTGGAAGAAGCC+TGG | - | chr1_1:72425057-72425076 | Msa0041850:intron | 50.0% | |
| GAGAGAGTTGGAAGAAGCCT+GGG | - | chr1_1:72425058-72425077 | Msa0041850:intron | 50.0% | |
| AGAGAGTTGGAAGAAGCCTG+GGG | - | chr1_1:72425059-72425078 | Msa0041850:intron | 50.0% | |
| TGTTCAAGCTTGGAGACACC+AGG | + | chr1_1:72425113-72425132 | None:intergenic | 50.0% | |
| GTCTTTCATTCTAGGCTGCC+TGG | - | chr1_1:72425275-72425294 | Msa0041850:intron | 50.0% | |
| AGGAGGAGAATCGGAATCGG+TGG | + | chr1_1:72422478-72422497 | None:intergenic | 55.0% | |
| GTAGGAGAACGAGGAAGAGG+AGG | + | chr1_1:72422495-72422514 | None:intergenic | 55.0% | |
| GAGGTAGGAGAACGAGGAAG+AGG | + | chr1_1:72422498-72422517 | None:intergenic | 55.0% | |
| ACAGAGGAGGTAGGAGAACG+AGG | + | chr1_1:72422504-72422523 | None:intergenic | 55.0% | |
| ! | GGAGAAGTTTTACGGCGTGG+AGG | + | chr1_1:72422969-72422988 | None:intergenic | 55.0% |
| AGCAGCACACAAGGCAATGG+AGG | - | chr1_1:72423240-72423259 | Msa0041850:CDS | 55.0% | |
| GGAGGCTCGAAGAACTGCTT+TGG | - | chr1_1:72423258-72423277 | Msa0041850:CDS | 55.0% | |
| GGCTCGAAGAACTGCTTTGG+TGG | - | chr1_1:72423261-72423280 | Msa0041850:CDS | 55.0% | |
| !! | CTGCTTTGGTGGAGGCATCT+TGG | - | chr1_1:72423272-72423291 | Msa0041850:CDS | 55.0% |
| ACCTCGCGGCGCGTAAAATT+CGG | + | chr1_1:72423300-72423319 | None:intergenic | 55.0% | |
| TGAAGCTTTCGAGGCAGCTG+AGG | - | chr1_1:72423531-72423550 | Msa0041850:CDS | 55.0% | |
| TTTCGAGGCAGCTGAGGCTA+TGG | - | chr1_1:72423537-72423556 | Msa0041850:CDS | 55.0% | |
| TTCGAGGCAGCTGAGGCTAT+GGG | - | chr1_1:72423538-72423557 | Msa0041850:CDS | 55.0% | |
| ! | TGAAGGGCGTGTTGCAAGCT+TGG | + | chr1_1:72423725-72423744 | None:intergenic | 55.0% |
| GGGATTGCGAAAGTCAGCCT+TGG | - | chr1_1:72424146-72424165 | Msa0041850:CDS | 55.0% | |
| GCATCAAGTGGCATGCCTAG+AGG | - | chr1_1:72424453-72424472 | Msa0041850:intron | 55.0% | |
| GCGCGTATCTAGGCTAGAGA+AGG | - | chr1_1:72424830-72424849 | Msa0041850:CDS | 55.0% | |
| !! | TGAAGAAGGTGGTGGTGGTC+TGG | - | chr1_1:72424923-72424942 | Msa0041850:CDS | 55.0% |
| CAAGGCAAGGGAGAGAGAGT+TGG | - | chr1_1:72425046-72425065 | Msa0041850:intron | 55.0% | |
| CTTGGAGACACCAGGCTTCA+TGG | + | chr1_1:72425105-72425124 | None:intergenic | 55.0% | |
| TGTGGCTCGACGCAAGGCAA+GGG | - | chr1_1:72425034-72425053 | Msa0041850:intron | 60.0% | |
| GAGTTGGAAGAAGCCTGGGG+AGG | - | chr1_1:72425062-72425081 | Msa0041850:intron | 60.0% | |
| TCCTAAGCTCAGTCCTCCCC+AGG | + | chr1_1:72425078-72425097 | None:intergenic | 60.0% | |
| ! | GCCGAATTTTACGCGCCGCG+AGG | - | chr1_1:72423296-72423315 | Msa0041850:CDS | 65.0% |
| CTGTGGCTCGACGCAAGGCA+AGG | - | chr1_1:72425033-72425052 | Msa0041850:intron | 65.0% | |
| GCCTGGGGAGGACTGAGCTT+AGG | - | chr1_1:72425074-72425093 | Msa0041850:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 72422292 | 72425551 | 72422292 | ID=Msa0041850;Name=Msa0041850 |
| chr1_1 | mRNA | 72422292 | 72425551 | 72422292 | ID=Msa0041850-mRNA-1;Parent=Msa0041850;Name=Msa0041850-mRNA-1;_AED=0.01;_eAED=0.01;_QI=143|1|1|1|1|1|5|206|719 |
| chr1_1 | exon | 72422292 | 72422554 | 72422292 | ID=Msa0041850-mRNA-1:exon:24091;Parent=Msa0041850-mRNA-1 |
| chr1_1 | exon | 72422704 | 72424366 | 72422704 | ID=Msa0041850-mRNA-1:exon:24090;Parent=Msa0041850-mRNA-1 |
| chr1_1 | exon | 72424526 | 72424698 | 72424526 | ID=Msa0041850-mRNA-1:exon:24089;Parent=Msa0041850-mRNA-1 |
| chr1_1 | exon | 72424791 | 72424949 | 72424791 | ID=Msa0041850-mRNA-1:exon:24088;Parent=Msa0041850-mRNA-1 |
| chr1_1 | exon | 72425301 | 72425551 | 72425301 | ID=Msa0041850-mRNA-1:exon:24087;Parent=Msa0041850-mRNA-1 |
| chr1_1 | five_prime_UTR | 72425409 | 72425551 | 72425409 | ID=Msa0041850-mRNA-1:five_prime_utr;Parent=Msa0041850-mRNA-1 |
| chr1_1 | CDS | 72425301 | 72425408 | 72425301 | ID=Msa0041850-mRNA-1:cds;Parent=Msa0041850-mRNA-1 |
| chr1_1 | CDS | 72424791 | 72424949 | 72424791 | ID=Msa0041850-mRNA-1:cds;Parent=Msa0041850-mRNA-1 |
| chr1_1 | CDS | 72424526 | 72424698 | 72424526 | ID=Msa0041850-mRNA-1:cds;Parent=Msa0041850-mRNA-1 |
| chr1_1 | CDS | 72422704 | 72424366 | 72422704 | ID=Msa0041850-mRNA-1:cds;Parent=Msa0041850-mRNA-1 |
| chr1_1 | CDS | 72422498 | 72422554 | 72422498 | ID=Msa0041850-mRNA-1:cds;Parent=Msa0041850-mRNA-1 |
| chr1_1 | three_prime_UTR | 72422292 | 72422497 | 72422292 | ID=Msa0041850-mRNA-1:three_prime_utr;Parent=Msa0041850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
