Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179130 | A0A072VPU0 | 95.410 | 719 | 29 | 3 | 1 | 719 | 1 | 715 | 0.0 | 1332 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa0179130 | 0.814259 | 1.687151e-51 | -8.615850e-47 |
| Msa0041850 | Msa0179130 | 0.973544 | 1.310096e-136 | -8.615850e-47 |
| Msa0048510 | Msa0179130 | 0.816917 | 4.317906e-52 | -8.615850e-47 |
| Msa0077340 | Msa0179130 | 0.829822 | 4.152081e-55 | -8.615850e-47 |
| Msa0077560 | Msa0179130 | 0.823303 | 1.489673e-53 | -8.615850e-47 |
| Msa0094780 | Msa0179130 | 0.843289 | 1.535902e-58 | -8.615850e-47 |
| Msa0123070 | Msa0179130 | 0.800486 | 1.409102e-48 | -8.615850e-47 |
| Msa0133280 | Msa0179130 | 0.802957 | 4.384253e-49 | -8.615850e-47 |
| Msa0179130 | Msa0213030 | 0.807884 | 4.064562e-50 | -8.615850e-47 |
| Msa0179130 | Msa0225860 | 0.801494 | 8.767557e-49 | -8.615850e-47 |
| Msa0179130 | Msa0241610 | 0.827176 | 1.807490e-54 | -8.615850e-47 |
| Msa0179130 | Msa0300320 | 0.807276 | 5.469730e-50 | -8.615850e-47 |
| Msa0179130 | Msa0307270 | 0.819271 | 1.267667e-52 | -8.615850e-47 |
| Msa0179130 | Msa0330380 | 0.808448 | 3.081344e-50 | -8.615850e-47 |
| Msa0179130 | Msa0337700 | 0.801209 | 1.002949e-48 | -8.615850e-47 |
| Msa0179130 | Msa0361910 | 0.857303 | 1.789596e-62 | -8.615850e-47 |
| Msa0179130 | Msa0409830 | 0.832346 | 9.959557e-56 | -8.615850e-47 |
| Msa0179130 | Msa0481890 | 0.810209 | 1.291585e-50 | -8.615850e-47 |
| Msa0179130 | Msa0483100 | 0.806572 | 7.708376e-50 | -8.615850e-47 |
| Msa0179130 | Msa0529030 | 0.822876 | 1.873653e-53 | -8.615850e-47 |
| Msa0179130 | Msa0534720 | 0.820110 | 8.156921e-53 | -8.615850e-47 |
| Msa0179130 | Msa0567170 | 0.807864 | 4.104453e-50 | -8.615850e-47 |
| Msa0179130 | Msa0580370 | 0.813729 | 2.208261e-51 | -8.615850e-47 |
| Msa0179130 | Msa0624900 | 0.835928 | 1.260757e-56 | -8.615850e-47 |
| Msa0179130 | Msa0658640 | 0.812043 | 5.170740e-51 | -8.615850e-47 |
| Msa0179130 | Msa0702720 | 0.805531 | 1.276413e-49 | -8.615850e-47 |
| Msa0179130 | Msa0703600 | 0.803217 | 3.872641e-49 | -8.615850e-47 |
| Msa0179130 | Msa0709200 | 0.803721 | 3.044716e-49 | -8.615850e-47 |
| Msa0179130 | Msa0709440 | 0.811419 | 7.066216e-51 | -8.615850e-47 |
| Msa0179130 | Msa0735780 | 0.826948 | 2.049388e-54 | -8.615850e-47 |
| Msa0179130 | Msa0795870 | 0.817653 | 2.949706e-52 | -8.615850e-47 |
| Msa0179130 | Msa0815970 | 0.805897 | 1.069352e-49 | -8.615850e-47 |
| Msa0179130 | Msa0824450 | 0.805332 | 1.404621e-49 | -8.615850e-47 |
| Msa0179130 | Msa0833650 | 0.809815 | 1.570040e-50 | -8.615850e-47 |
| Msa0179130 | Msa0878280 | 0.812894 | 3.369756e-51 | -8.615850e-47 |
| Msa0179130 | Msa0941170 | 0.813403 | 2.605837e-51 | -8.615850e-47 |
| Msa0179130 | Msa1072940 | 0.807007 | 6.237842e-50 | -8.615850e-47 |
| Msa0179130 | Msa1084530 | 0.804419 | 2.179950e-49 | -8.615850e-47 |
| Msa0179130 | Msa1125990 | 0.800929 | 1.144396e-48 | -8.615850e-47 |
| Msa0179130 | Msa1132840 | 0.813476 | 2.510829e-51 | -8.615850e-47 |
| Msa0179130 | Msa1160920 | 0.811803 | 5.830412e-51 | -8.615850e-47 |
| Msa0179130 | Msa1171290 | 0.811900 | 5.554420e-51 | -8.615850e-47 |
| Msa0179130 | Msa1190590 | 0.808499 | 3.005489e-50 | -8.615850e-47 |
| Msa0179130 | Msa1192570 | 0.823801 | 1.139271e-53 | -8.615850e-47 |
| Msa0179130 | Msa1200890 | 0.808628 | 2.820637e-50 | -8.615850e-47 |
| Msa0179130 | Msa1208950 | 0.828177 | 1.039206e-54 | -8.615850e-47 |
| Msa0179130 | Msa1226520 | 0.806303 | 8.783478e-50 | -8.615850e-47 |
| Msa0179130 | Msa1320670 | 0.804890 | 1.738812e-49 | -8.615850e-47 |
| Msa0179130 | Msa1341840 | 0.806316 | 8.726630e-50 | -8.615850e-47 |
| Msa0179130 | Msa1348090 | 0.801508 | 8.711196e-49 | -8.615850e-47 |
| Msa0179130 | Msa1405460 | 0.823226 | 1.552489e-53 | -8.615850e-47 |
| Msa0179130 | Msa1440880 | 0.816384 | 5.686561e-52 | -8.615850e-47 |
| Msa0179130 | Msa1461370 | 0.806672 | 7.340086e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179130 | MtrunA17_Chr1g0207541 | 95.410 | 719 | 29 | 3 | 1 | 719 | 1 | 715 | 0.0 | 1332 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179130 | AT1G49870.1 | 44.103 | 814 | 303 | 23 | 28 | 711 | 32 | 823 | 4.38e-173 | 517 |
| Msa0179130 | AT1G49870.2 | 44.081 | 794 | 297 | 22 | 48 | 711 | 9 | 785 | 5.72e-171 | 510 |
Find 169 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCATTGGCTGTTCTCTTTC+TGG | -0.029662 | 1_4:-66546598 | None:intergenic |
| CGGACTTGAGTTCACTCTTT+TGG | 0.163007 | 1_4:-66545912 | None:intergenic |
| CGAAAATGATAATGTATTAT+TGG | 0.216712 | 1_4:-66544418 | None:intergenic |
| TAAGTTGATAACAAGGAATT+TGG | 0.228352 | 1_4:+66547385 | Msa0179130:three_prime_UTR |
| TCTATTTGACAATGCTTCTT+TGG | 0.229577 | 1_4:-66545628 | None:intergenic |
| TGATGGGTTGGAGAAGATTT+TGG | 0.232028 | 1_4:+66546707 | Msa0179130:CDS |
| AGCAGAAGCTCAACTATTAA+AGG | 0.244271 | 1_4:+66545531 | Msa0179130:CDS |
| ATAGAGACACCCTCTATTAA+TGG | 0.259371 | 1_4:+66545646 | Msa0179130:CDS |
| ACCTGATTTGGGAAGTATTC+TGG | 0.265806 | 1_4:+66546395 | Msa0179130:CDS |
| ATCGGAGTGCATACCTGATT+TGG | 0.296691 | 1_4:+66546383 | Msa0179130:CDS |
| GCAACTATAGTTGCAACTTA+TGG | 0.305864 | 1_4:+66546078 | Msa0179130:CDS |
| TTGCGCGGAAACCAGTTAAT+AGG | 0.308760 | 1_4:-66545026 | None:intergenic |
| AATGATAATGAAACAAAATT+AGG | 0.316246 | 1_4:+66546324 | Msa0179130:CDS |
| AATAAATTGACGAAGGAATT+AGG | 0.317425 | 1_4:+66544933 | Msa0179130:CDS |
| GTAAAACTTCTCCTATTAAC+TGG | 0.318045 | 1_4:+66545015 | Msa0179130:CDS |
| TGAGAGTTTGGATAAAGTTT+TGG | 0.321510 | 1_4:+66546842 | Msa0179130:CDS |
| TAGGGTTACCTTTCCGATCT+TGG | 0.327646 | 1_4:-66544566 | None:intergenic |
| TGATGACTTTCATCTGTATC+AGG | 0.330426 | 1_4:-66545832 | None:intergenic |
| AAGAGTATTGAGGGAGAAAA+TGG | 0.331424 | 1_4:+66545246 | Msa0179130:CDS |
| GAGGAAAATTAAGATGCTTC+AGG | 0.332559 | 1_4:+66545070 | Msa0179130:CDS |
| GTCTTTCATTCTAGGCTGCC+TGG | 0.353720 | 1_4:+66547314 | Msa0179130:intron |
| CTTGGAGACACCAGGCTTCA+TGG | 0.355841 | 1_4:-66547141 | None:intergenic |
| CTTGCTGGAAAATTAATTGC+TGG | 0.359085 | 1_4:-66546147 | None:intergenic |
| TCTCATATTCAGGAAGTAGA+TGG | 0.359391 | 1_4:+66545172 | Msa0179130:intron |
| TCTCTTTCCAATCTGTGTAC+TGG | 0.361707 | 1_4:-66546735 | None:intergenic |
| AGAAGGAGAAAATGAAGTTC+GGG | 0.361814 | 1_4:+66546886 | Msa0179130:CDS |
| ACCTCGCGGCGCGTAAAATT+CGG | 0.362205 | 1_4:-66545336 | None:intergenic |
| AACAACATTTACATATTCAA+TGG | 0.367882 | 1_4:-66547410 | None:intergenic |
| AATGACGACATTCTTCTTGC+TGG | 0.390183 | 1_4:-66546162 | None:intergenic |
| TGGTGGTCTGGACCAAGTTT+TGG | 0.394084 | 1_4:+66546974 | Msa0179130:CDS |
| ATTGGAAAGAGAGAAGTTAC+AGG | 0.401255 | 1_4:+66546746 | Msa0179130:CDS |
| AAAAGTTATCGTCACAAATC+AGG | 0.404328 | 1_4:+66544979 | Msa0179130:CDS |
| ACAATGCTTCTTTGGACAAT+CGG | 0.405172 | 1_4:-66545620 | None:intergenic |
| AGCAAGAAGAATGTCGTCAT+TGG | 0.406742 | 1_4:+66546164 | Msa0179130:CDS |
| TGGAAAATTAATTGCTGGAT+TGG | 0.407077 | 1_4:-66546142 | None:intergenic |
| AACCTTGTCTTGTTCAAGCT+TGG | 0.407936 | 1_4:-66547159 | None:intergenic |
| GAGGTAGGAGAACGAGGAAG+AGG | 0.408997 | 1_4:-66544532 | None:intergenic |
| TTGTCTCCAAACGGTTGTTT+CGG | 0.409432 | 1_4:-66546938 | None:intergenic |
| AATTCATCTTTACTAAATGA+AGG | 0.411210 | 1_4:-66545778 | None:intergenic |
| GATTCCAAGATATCATTTCC+AGG | 0.413402 | 1_4:+66545943 | Msa0179130:CDS |
| CTCACAATCCGCCACATTAG+TGG | 0.415788 | 1_4:-66546823 | None:intergenic |
| ACCAGAATACTTCCCAAATC+AGG | 0.421631 | 1_4:-66546396 | None:intergenic |
| GGAAAATTAATTGCTGGATT+GGG | 0.421777 | 1_4:-66546141 | None:intergenic |
| TTGTTTCATTATCATTCCTA+TGG | 0.423963 | 1_4:-66546317 | None:intergenic |
| AATCCCTGGAAATGATATCT+TGG | 0.433501 | 1_4:-66545947 | None:intergenic |
| TGTGGCGGATTGTGAGAGTT+TGG | 0.433589 | 1_4:+66546830 | Msa0179130:CDS |
| TTATGGTTTAAATGCTGCAT+TGG | 0.435226 | 1_4:+66546095 | Msa0179130:CDS |
| CTGCTTTGGTGGAGGCATCT+TGG | 0.435917 | 1_4:+66545311 | Msa0179130:CDS |
| GGTAAAGCCAGTACACAGAT+TGG | 0.437713 | 1_4:+66546728 | Msa0179130:CDS |
| TGAAGAAGGTGGTGGTGGTC+TGG | 0.438089 | 1_4:+66546962 | Msa0179130:CDS |
| AATGAAGTTCGGGGATGAAT+GGG | 0.438179 | 1_4:+66546896 | Msa0179130:CDS |
| TCGGAGTGCATACCTGATTT+GGG | 0.438474 | 1_4:+66546384 | Msa0179130:CDS |
| ATGATAGAGGAAAACATTGA+TGG | 0.441913 | 1_4:+66546690 | Msa0179130:CDS |
| AGAGAGAGTTGGAAGAAGCC+TGG | 0.442819 | 1_4:+66547096 | Msa0179130:CDS |
| CAATGCTTCTTTGGACAATC+GGG | 0.443605 | 1_4:-66545619 | None:intergenic |
| TGAAGGGCGTGTTGCAAGCT+TGG | 0.443827 | 1_4:-66545761 | None:intergenic |
| CTTCTTCATTTGTCTCCAAA+CGG | 0.447190 | 1_4:-66546947 | None:intergenic |
| CGAAGATGAACTTTCTTCAC+TGG | 0.450063 | 1_4:+66546056 | Msa0179130:CDS |
| AAGTGCAACTGAAGCTTTCG+AGG | 0.450166 | 1_4:+66545561 | Msa0179130:CDS |
| GAGAGAGTTGGAAGAAGCCT+GGG | 0.453084 | 1_4:+66547097 | Msa0179130:CDS |
| AAATGAAGTTCGGGGATGAA+TGG | 0.455357 | 1_4:+66546895 | Msa0179130:CDS |
| GGAGGCTCGAAGAACTGCTT+TGG | 0.458895 | 1_4:+66545297 | Msa0179130:CDS |
| ACATGTCTCAAGACTTGAAA+AGG | 0.459009 | 1_4:+66546563 | Msa0179130:CDS |
| GAGAAGGAGAAAATGAAGTT+CGG | 0.459404 | 1_4:+66546885 | Msa0179130:CDS |
| TTTCGAGGCAGCTGAGGCTA+TGG | 0.459678 | 1_4:+66545576 | Msa0179130:CDS |
| TATAAATTTGAATATGATAG+AGG | 0.460587 | 1_4:+66546677 | Msa0179130:CDS |
| TTGACGCTTGATCAGACTCT+TGG | 0.460929 | 1_4:+66545202 | Msa0179130:CDS |
| ACGAGGAAGAGGAGGAGAAT+CGG | 0.462914 | 1_4:-66544521 | None:intergenic |
| ATACTAGCCCCTCTCAAACT+TGG | 0.464721 | 1_4:+66547509 | Msa0179130:three_prime_UTR |
| TGATCCTTCTCCATTAATAG+AGG | 0.474527 | 1_4:-66545656 | None:intergenic |
| CGCATTATTCAAGAGTATTG+AGG | 0.475279 | 1_4:+66545236 | Msa0179130:CDS |
| GGCTCGAAGAACTGCTTTGG+TGG | 0.478001 | 1_4:+66545300 | Msa0179130:CDS |
| TGAGCTTCTGCTTCATCACT+AGG | 0.478022 | 1_4:-66545520 | None:intergenic |
| TCCTAAGCTCAGTCCTCCCC+AGG | 0.483030 | 1_4:-66547114 | None:intergenic |
| AGAGGAAAACATTGATGGGT+TGG | 0.485344 | 1_4:+66546695 | Msa0179130:CDS |
| CTCAGCTTCAGCTTTAATCC+AGG | 0.486257 | 1_4:-66547332 | None:intergenic |
| GTAGGAGAACGAGGAAGAGG+AGG | 0.488886 | 1_4:-66544529 | None:intergenic |
| TGAACTCAAGTCCGAAGACT+TGG | 0.489746 | 1_4:+66545921 | Msa0179130:CDS |
| TAATGCTTCACCAGAAGAAA+AGG | 0.490641 | 1_4:-66546640 | None:intergenic |
| AGCTCTTGTAAATCTGTTGA+TGG | 0.490869 | 1_4:+66546354 | Msa0179130:CDS |
| GCAAGAAGAATGTCGTCATT+GGG | 0.491869 | 1_4:+66546165 | Msa0179130:CDS |
| AAGTTATCCACGCAATGTGC+TGG | 0.496221 | 1_4:-66547575 | None:intergenic |
| AATTGCTGGATTGGGCTGCT+TGG | 0.499178 | 1_4:-66546133 | None:intergenic |
| CAAGGCAAGGGAGAGAGAGT+TGG | 0.500413 | 1_4:+66547085 | Msa0179130:CDS |
| TATCTTGGAATCCAAGTCTT+CGG | 0.500436 | 1_4:-66545932 | None:intergenic |
| GCATTATTCAAGAGTATTGA+GGG | 0.503484 | 1_4:+66545237 | Msa0179130:CDS |
| AAGACTTGAAAAGGAAGTTC+AGG | 0.505605 | 1_4:+66546572 | Msa0179130:CDS |
| TGAAAGTCATCAGGACTTAA+CGG | 0.511572 | 1_4:+66545843 | Msa0179130:CDS |
| ACTAAGACCTTGTCTAAGCC+TGG | 0.511721 | 1_4:-66546537 | None:intergenic |
| ACAGAGTAACTGAGAAACTT+TGG | 0.512047 | 1_4:-66544353 | None:intergenic |
| CATTTCCAGGGATTATTGAA+AGG | 0.513095 | 1_4:+66545956 | Msa0179130:CDS |
| TGTTCAAGCTTGGAGACACC+AGG | 0.514480 | 1_4:-66547149 | None:intergenic |
| CTTTCTCGATGTTCCATCCA+AGG | 0.515891 | 1_4:-66546202 | None:intergenic |
| CTGTGGCTCGACGCAAGGCA+AGG | 0.519812 | 1_4:+66547072 | Msa0179130:CDS |
| GGATTATTGAAAGGAAAAGT+AGG | 0.522151 | 1_4:+66545965 | Msa0179130:CDS |
| CAGACTTGAGAGGGAAAAGA+TGG | 0.523808 | 1_4:+66547010 | Msa0179130:CDS |
| TCAATACTCTTGAATAATGC+GGG | 0.525190 | 1_4:-66545234 | None:intergenic |
| AGCTAGAGAAGCAGCACACA+AGG | 0.526135 | 1_4:+66545270 | Msa0179130:CDS |
| TGAAAATAGAATAAAACTTG+TGG | 0.526849 | 1_4:+66546002 | Msa0179130:CDS |
| CTTGGATGGAACATCGAGAA+AGG | 0.529370 | 1_4:+66546203 | Msa0179130:CDS |
| TGATACAGATGAAAGTCATC+AGG | 0.531714 | 1_4:+66545834 | Msa0179130:CDS |
| GCCTGGGGAGGACTGAGCTT+AGG | 0.533346 | 1_4:+66547113 | Msa0179130:CDS |
| AAGTCACCGAAACAACCGTT+TGG | 0.536970 | 1_4:+66546932 | Msa0179130:CDS |
| GACTTCTTTGTCTACATCAA+AGG | 0.537885 | 1_4:-66545713 | None:intergenic |
| CTCATATTCAGGAAGTAGAT+GGG | 0.539202 | 1_4:+66545173 | Msa0179130:intron |
| ATTCATCTTTACTAAATGAA+GGG | 0.540162 | 1_4:-66545777 | None:intergenic |
| TCGAAGAACTGCTTTGGTGG+AGG | 0.540303 | 1_4:+66545303 | Msa0179130:CDS |
| TTCGAGGCAGCTGAGGCTAT+GGG | 0.544887 | 1_4:+66545577 | Msa0179130:CDS |
| ACATAAATCCAGACTTGAGA+GGG | 0.547084 | 1_4:+66547001 | Msa0179130:CDS |
| CTCAATACTCTTGAATAATG+CGG | 0.547525 | 1_4:-66545235 | None:intergenic |
| TTGCGAAAGTCAGCCTTGGA+TGG | 0.549215 | 1_4:+66546189 | Msa0179130:CDS |
| TTAGGAAACTCCATGAAGCC+TGG | 0.549917 | 1_4:+66547131 | Msa0179130:CDS |
| AGAAGCAGCACACAAGGCAA+TGG | 0.550484 | 1_4:+66545276 | Msa0179130:CDS |
| GGGATTGCGAAAGTCAGCCT+TGG | 0.552736 | 1_4:+66546185 | Msa0179130:CDS |
| ATCTGTTGATGGAACTCCAT+CGG | 0.553036 | 1_4:+66546365 | Msa0179130:CDS |
| ACAAATGAAGAAGGTGGTGG+TGG | 0.556403 | 1_4:+66546957 | Msa0179130:CDS |
| GATGACTTTCATCTGTATCA+GGG | 0.556725 | 1_4:-66545831 | None:intergenic |
| AAGAGGAGGAGAATCGGAAT+CGG | 0.556799 | 1_4:-66544515 | None:intergenic |
| TAATGAAACAAAATTAGGTA+AGG | 0.560990 | 1_4:+66546329 | Msa0179130:CDS |
| TGTGGCTCGACGCAAGGCAA+GGG | 0.561334 | 1_4:+66547073 | Msa0179130:CDS |
| AAGTCAGCAAAGGAAATGCT+AGG | 0.566016 | 1_4:+66546468 | Msa0179130:CDS |
| TGATAGAGGAAAACATTGAT+GGG | 0.566252 | 1_4:+66546691 | Msa0179130:CDS |
| ATTCCAAGATATCATTTCCA+GGG | 0.570612 | 1_4:+66545944 | Msa0179130:CDS |
| AACGAAAACCAAGTTTGAGA+GGG | 0.578093 | 1_4:-66547517 | None:intergenic |
| ACACCCTCTATTAATGGAGA+AGG | 0.578628 | 1_4:+66545652 | Msa0179130:CDS |
| TTAGGTCAATCTACATCAAG+TGG | 0.579696 | 1_4:+66544951 | Msa0179130:CDS |
| GGAACATCGAGAAAGGATCA+TGG | 0.579814 | 1_4:+66546210 | Msa0179130:CDS |
| ATTTCGACCAGCACATTGCG+TGG | 0.580499 | 1_4:+66547568 | Msa0179130:three_prime_UTR |
| TCGGTGGAGTGATTCGTTGA+CGG | 0.581185 | 1_4:-66544496 | None:intergenic |
| AAGTGGATTCCTTCTTGGAG+AGG | 0.582173 | 1_4:+66545051 | Msa0179130:CDS |
| TTTGAGAATGAAGAGAACGA+TGG | 0.583104 | 1_4:-66544386 | None:intergenic |
| AAATCAGGTATGCACTCCGA+TGG | 0.585588 | 1_4:-66546381 | None:intergenic |
| TCCTCTGTCAGATCCAAGAT+CGG | 0.585811 | 1_4:+66544553 | Msa0179130:CDS |
| CTCCAAGCTTGAACAAGACA+AGG | 0.587799 | 1_4:+66547157 | Msa0179130:CDS |
| TTAAAGCTGAAGCTGAGGAA+AGG | 0.588751 | 1_4:+66547338 | Msa0179130:CDS |
| AGCAGCACACAAGGCAATGG+AGG | 0.589770 | 1_4:+66545279 | Msa0179130:CDS |
| AGGAGGAGAATCGGAATCGG+TGG | 0.591234 | 1_4:-66544512 | None:intergenic |
| CGTTTGGAGACAAATGAAGA+AGG | 0.596460 | 1_4:+66546948 | Msa0179130:CDS |
| GCGCGTATCTAGGCTAGAGA+AGG | 0.598756 | 1_4:+66546869 | Msa0179130:CDS |
| AAACGAAAACCAAGTTTGAG+AGG | 0.607892 | 1_4:-66547518 | None:intergenic |
| TACAGACAAAGAAAGAGTCA+TGG | 0.609998 | 1_4:+66546798 | Msa0179130:CDS |
| AGCAAAGATTAAGTCAGCAA+AGG | 0.612039 | 1_4:+66546458 | Msa0179130:CDS |
| TCCGATCTTGGATCTGACAG+AGG | 0.612104 | 1_4:-66544554 | None:intergenic |
| AACATAAATCCAGACTTGAG+AGG | 0.616446 | 1_4:+66547000 | Msa0179130:CDS |
| CTGGATTAAAGCTGAAGCTG+AGG | 0.623687 | 1_4:+66547333 | Msa0179130:CDS |
| TGAAGCTTTCGAGGCAGCTG+AGG | 0.626348 | 1_4:+66545570 | Msa0179130:CDS |
| TTGGATCTGACAGAGGAGGT+AGG | 0.627509 | 1_4:-66544547 | None:intergenic |
| GATCCTTCTCCATTAATAGA+GGG | 0.628940 | 1_4:-66545655 | None:intergenic |
| ACAGAGGAGGTAGGAGAACG+AGG | 0.631376 | 1_4:-66544538 | None:intergenic |
| AAAGATCACACAGAAGTACC+AGG | 0.634275 | 1_4:+66546519 | Msa0179130:CDS |
| AATATGATAAGTTGATAACA+AGG | 0.637873 | 1_4:+66547378 | Msa0179130:exon |
| CATGACAAGACTTGAAAGAG+AGG | 0.639854 | 1_4:+66546275 | Msa0179130:CDS |
| ATGAAGTTCGGGGATGAATG+GGG | 0.640238 | 1_4:+66546897 | Msa0179130:CDS |
| GAGTCATGGAGCCACTAATG+TGG | 0.641853 | 1_4:+66546812 | Msa0179130:CDS |
| GAGACAAATGAAGAAGGTGG+TGG | 0.652713 | 1_4:+66546954 | Msa0179130:CDS |
| TGAGGAAAGGAATCAAGCAA+CGG | 0.654950 | 1_4:+66547351 | Msa0179130:CDS |
| GAAGGAGAAAATGAAGTTCG+GGG | 0.658054 | 1_4:+66546887 | Msa0179130:CDS |
| TCATGGAGCCACTAATGTGG+CGG | 0.660737 | 1_4:+66546815 | Msa0179130:CDS |
| GCATCAAGTGGCATGCCTAG+AGG | 0.661243 | 1_4:+66546492 | Msa0179130:CDS |
| GAGTTGGAAGAAGCCTGGGG+AGG | 0.665105 | 1_4:+66547101 | Msa0179130:CDS |
| TTGGAGACAAATGAAGAAGG+TGG | 0.672134 | 1_4:+66546951 | Msa0179130:CDS |
| AGAGAGTTGGAAGAAGCCTG+GGG | 0.672942 | 1_4:+66547098 | Msa0179130:CDS |
| TGTCAGATCCAAGATCGGAA+AGG | 0.677182 | 1_4:+66544558 | Msa0179130:CDS |
| TGTGCAGAATAAATTGACGA+AGG | 0.678945 | 1_4:+66544926 | Msa0179130:intron |
| ACGAAAACCAAGTTTGAGAG+GGG | 0.683688 | 1_4:-66547516 | None:intergenic |
| AGAAGTACCAGGCTTAGACA+AGG | 0.689413 | 1_4:+66546530 | Msa0179130:CDS |
| GATCTTGGATCTGACAGAGG+AGG | 0.695341 | 1_4:-66544551 | None:intergenic |
| GAAATGCTAGGAGCATCAAG+TGG | 0.709128 | 1_4:+66546480 | Msa0179130:CDS |
| TTGTGGATATGATGATTGAG+CGG | 0.720856 | 1_4:+66546019 | Msa0179130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCATAAAATTGATATTTA+AGG | - | chr1_4:66544605-66544624 | None:intergenic | 10.0% |
| !! | TTATATTTATAAAGCTAAAT+TGG | + | chr1_4:66544807-66544826 | Msa0179130:intron | 10.0% |
| !!! | AAAAGAAAAAACTTTAAAAT+GGG | - | chr1_4:66547227-66547246 | None:intergenic | 10.0% |
| !!! | AAAAAGAAAAAACTTTAAAA+TGG | - | chr1_4:66547228-66547247 | None:intergenic | 10.0% |
| !!! | AAATATAGTTTTCATTATAA+AGG | - | chr1_4:66547552-66547571 | None:intergenic | 10.0% |
| !!! | CAATAATACATTATCATTTT+CGG | + | chr1_4:66544419-66544438 | Msa0179130:five_prime_UTR | 15.0% |
| !! | TAAAATTGATATTTAAGGAA+TGG | - | chr1_4:66544600-66544619 | None:intergenic | 15.0% |
| !!! | AATGATAATGAAACAAAATT+AGG | + | chr1_4:66546324-66546343 | Msa0179130:CDS | 15.0% |
| !! | TATAAATTTGAATATGATAG+AGG | + | chr1_4:66546677-66546696 | Msa0179130:CDS | 15.0% |
| !! | AAAAAAAAATTGTTGCATAT+TGG | + | chr1_4:66547476-66547495 | Msa0179130:three_prime_UTR | 15.0% |
| !!! | CGAAAATGATAATGTATTAT+TGG | - | chr1_4:66544421-66544440 | None:intergenic | 20.0% |
| !! | AATTGAAACTCATCAATTTA+GGG | - | chr1_4:66544660-66544679 | None:intergenic | 20.0% |
| !! | AATATAACAAGTAATCTCTA+AGG | - | chr1_4:66544794-66544813 | None:intergenic | 20.0% |
| !! | AAGCTTAATGCAAATAAAAT+AGG | + | chr1_4:66545360-66545379 | Msa0179130:intron | 20.0% |
| !! | ATGATTTACAATTTGAAAAC+AGG | + | chr1_4:66545415-66545434 | Msa0179130:intron | 20.0% |
| !! | ATTCATCTTTACTAAATGAA+GGG | - | chr1_4:66545780-66545799 | None:intergenic | 20.0% |
| !! | AATTCATCTTTACTAAATGA+AGG | - | chr1_4:66545781-66545800 | None:intergenic | 20.0% |
| !! | TGAAAATAGAATAAAACTTG+TGG | + | chr1_4:66546002-66546021 | Msa0179130:CDS | 20.0% |
| !! | GCTTAACTAAAAATTTATCT+AGG | - | chr1_4:66546254-66546273 | None:intergenic | 20.0% |
| !! | TAATGAAACAAAATTAGGTA+AGG | + | chr1_4:66546329-66546348 | Msa0179130:CDS | 20.0% |
| !!! | ATTTATGTTTTACCAAAACT+TGG | - | chr1_4:66546989-66547008 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTTTTTGCTTTTC+TGG | + | chr1_4:66547238-66547257 | Msa0179130:intron | 20.0% |
| !!! | AATATGATAAGTTGATAACA+AGG | + | chr1_4:66547378-66547397 | Msa0179130:exon | 20.0% |
| !! | AACAACATTTACATATTCAA+TGG | - | chr1_4:66547413-66547432 | None:intergenic | 20.0% |
| !! | GTAATCAGAATTTTCAACAA+TGG | + | chr1_4:66544453-66544472 | Msa0179130:exon | 25.0% |
| ! | AATTGATATTTAAGGAATGG+TGG | - | chr1_4:66544597-66544616 | None:intergenic | 25.0% |
| !!! | ATCAATTTAGGGTTTTGAAT+CGG | - | chr1_4:66544649-66544668 | None:intergenic | 25.0% |
| ! | CAATTGAAACTCATCAATTT+AGG | - | chr1_4:66544661-66544680 | None:intergenic | 25.0% |
| ! | AATAAATTGACGAAGGAATT+AGG | + | chr1_4:66544933-66544952 | Msa0179130:CDS | 25.0% |
| !! | AGTTAATAGGAGAAGTTTTA+CGG | - | chr1_4:66545016-66545035 | None:intergenic | 25.0% |
| ! | TTAATGCAAATAAAATAGGC+TGG | + | chr1_4:66545364-66545383 | Msa0179130:intron | 25.0% |
| ! | TTTGTCACATAACATTCAAT+TGG | - | chr1_4:66545444-66545463 | None:intergenic | 25.0% |
| !! | CTGAAAACCAACAATTTTAT+TGG | + | chr1_4:66545484-66545503 | Msa0179130:intron | 25.0% |
| ! | GAAAACACCAATAAAATTGT+TGG | - | chr1_4:66545494-66545513 | None:intergenic | 25.0% |
| !!! | ACAATTTTATTGGTGTTTTC+AGG | + | chr1_4:66545494-66545513 | Msa0179130:intron | 25.0% |
| ! | ACTAAAAATTTATCTAGGCT+TGG | - | chr1_4:66546249-66546268 | None:intergenic | 25.0% |
| ! | TTGTTTCATTATCATTCCTA+TGG | - | chr1_4:66546320-66546339 | None:intergenic | 25.0% |
| !! | TTTCAAACTTTTGTTCTCAT+TGG | - | chr1_4:66546616-66546635 | None:intergenic | 25.0% |
| !!! | TAAGTTGATAACAAGGAATT+TGG | + | chr1_4:66547385-66547404 | Msa0179130:three_prime_UTR | 25.0% |
| ! | TCAGAATTTTCAACAATGGA+TGG | + | chr1_4:66544457-66544476 | Msa0179130:exon | 30.0% |
| ! | ATATTTAAGGAATGGTGGAA+TGG | - | chr1_4:66544592-66544611 | None:intergenic | 30.0% |
| AACAAACTATGATCCATATC+TGG | - | chr1_4:66544694-66544713 | None:intergenic | 30.0% | |
| ! | TTGATAGTTTAGGGACTAAA+TGG | + | chr1_4:66544837-66544856 | Msa0179130:intron | 30.0% |
| AAAAGTTATCGTCACAAATC+AGG | + | chr1_4:66544979-66544998 | Msa0179130:CDS | 30.0% | |
| GTAAAACTTCTCCTATTAAC+TGG | + | chr1_4:66545015-66545034 | Msa0179130:CDS | 30.0% | |
| ! | AAATTAAGATGCTTCAGGTT+TGG | + | chr1_4:66545075-66545094 | Msa0179130:intron | 30.0% |
| GATATACGTTTCTCATATTC+AGG | + | chr1_4:66545162-66545181 | Msa0179130:intron | 30.0% | |
| TCAATACTCTTGAATAATGC+GGG | - | chr1_4:66545237-66545256 | None:intergenic | 30.0% | |
| CTCAATACTCTTGAATAATG+CGG | - | chr1_4:66545238-66545257 | None:intergenic | 30.0% | |
| !! | GCATTATTCAAGAGTATTGA+GGG | + | chr1_4:66545237-66545256 | Msa0179130:CDS | 30.0% |
| TCTATTTGACAATGCTTCTT+TGG | - | chr1_4:66545631-66545650 | None:intergenic | 30.0% | |
| ATTCCAAGATATCATTTCCA+GGG | + | chr1_4:66545944-66545963 | Msa0179130:CDS | 30.0% | |
| GGATTATTGAAAGGAAAAGT+AGG | + | chr1_4:66545965-66545984 | Msa0179130:CDS | 30.0% | |
| TTATGGTTTAAATGCTGCAT+TGG | + | chr1_4:66546095-66546114 | Msa0179130:CDS | 30.0% | |
| GGAAAATTAATTGCTGGATT+GGG | - | chr1_4:66546144-66546163 | None:intergenic | 30.0% | |
| TGGAAAATTAATTGCTGGAT+TGG | - | chr1_4:66546145-66546164 | None:intergenic | 30.0% | |
| ! | ATCATTCCTATGGTTTTTCT+TGG | - | chr1_4:66546310-66546329 | None:intergenic | 30.0% |
| ATGATAGAGGAAAACATTGA+TGG | + | chr1_4:66546690-66546709 | Msa0179130:CDS | 30.0% | |
| TGATAGAGGAAAACATTGAT+GGG | + | chr1_4:66546691-66546710 | Msa0179130:CDS | 30.0% | |
| !! | AAGTTACAGGTTTTATCACA+GGG | + | chr1_4:66546759-66546778 | Msa0179130:CDS | 30.0% |
| ! | TGAGAGTTTGGATAAAGTTT+TGG | + | chr1_4:66546842-66546861 | Msa0179130:CDS | 30.0% |
| !!! | TAATCCAGTTAGTTTTTCTG+TGG | + | chr1_4:66547055-66547074 | Msa0179130:CDS | 30.0% |
| !! | TTTAGTGTTGTTTGACACTT+TGG | + | chr1_4:66547184-66547203 | Msa0179130:intron | 30.0% |
| ACAGAGTAACTGAGAAACTT+TGG | - | chr1_4:66544356-66544375 | None:intergenic | 35.0% | |
| TTTGAGAATGAAGAGAACGA+TGG | - | chr1_4:66544389-66544408 | None:intergenic | 35.0% | |
| TTGTTCACTGAATCCAGATA+TGG | + | chr1_4:66544678-66544697 | Msa0179130:intron | 35.0% | |
| !! | TGGAGAGATGTTGATAGTTT+AGG | + | chr1_4:66544827-66544846 | Msa0179130:intron | 35.0% |
| !! | GGAGAGATGTTGATAGTTTA+GGG | + | chr1_4:66544828-66544847 | Msa0179130:intron | 35.0% |
| TAGTTTAGGGACTAAATGGA+TGG | + | chr1_4:66544841-66544860 | Msa0179130:intron | 35.0% | |
| TGTGCAGAATAAATTGACGA+AGG | + | chr1_4:66544926-66544945 | Msa0179130:intron | 35.0% | |
| TTAGGTCAATCTACATCAAG+TGG | + | chr1_4:66544951-66544970 | Msa0179130:CDS | 35.0% | |
| ! | CAAAAAAGTGGATTCCTTCT+TGG | + | chr1_4:66545046-66545065 | Msa0179130:CDS | 35.0% |
| ! | CTTAATTTTCCTCTCCAAGA+AGG | - | chr1_4:66545063-66545082 | None:intergenic | 35.0% |
| GAGGAAAATTAAGATGCTTC+AGG | + | chr1_4:66545070-66545089 | Msa0179130:CDS | 35.0% | |
| TCTCATATTCAGGAAGTAGA+TGG | + | chr1_4:66545172-66545191 | Msa0179130:intron | 35.0% | |
| CTCATATTCAGGAAGTAGAT+GGG | + | chr1_4:66545173-66545192 | Msa0179130:intron | 35.0% | |
| !! | CGCATTATTCAAGAGTATTG+AGG | + | chr1_4:66545236-66545255 | Msa0179130:CDS | 35.0% |
| !! | AAGAGTATTGAGGGAGAAAA+TGG | + | chr1_4:66545246-66545265 | Msa0179130:CDS | 35.0% |
| AGCAGAAGCTCAACTATTAA+AGG | + | chr1_4:66545531-66545550 | Msa0179130:CDS | 35.0% | |
| ACAATGCTTCTTTGGACAAT+CGG | - | chr1_4:66545623-66545642 | None:intergenic | 35.0% | |
| ATAGAGACACCCTCTATTAA+TGG | + | chr1_4:66545646-66545665 | Msa0179130:CDS | 35.0% | |
| GATCCTTCTCCATTAATAGA+GGG | - | chr1_4:66545658-66545677 | None:intergenic | 35.0% | |
| TGATCCTTCTCCATTAATAG+AGG | - | chr1_4:66545659-66545678 | None:intergenic | 35.0% | |
| GACTTCTTTGTCTACATCAA+AGG | - | chr1_4:66545716-66545735 | None:intergenic | 35.0% | |
| GATGACTTTCATCTGTATCA+GGG | - | chr1_4:66545834-66545853 | None:intergenic | 35.0% | |
| TGATGACTTTCATCTGTATC+AGG | - | chr1_4:66545835-66545854 | None:intergenic | 35.0% | |
| TGATACAGATGAAAGTCATC+AGG | + | chr1_4:66545834-66545853 | Msa0179130:CDS | 35.0% | |
| TGAAAGTCATCAGGACTTAA+CGG | + | chr1_4:66545843-66545862 | Msa0179130:CDS | 35.0% | |
| TATCTTGGAATCCAAGTCTT+CGG | - | chr1_4:66545935-66545954 | None:intergenic | 35.0% | |
| GATTCCAAGATATCATTTCC+AGG | + | chr1_4:66545943-66545962 | Msa0179130:CDS | 35.0% | |
| AATCCCTGGAAATGATATCT+TGG | - | chr1_4:66545950-66545969 | None:intergenic | 35.0% | |
| CATTTCCAGGGATTATTGAA+AGG | + | chr1_4:66545956-66545975 | Msa0179130:CDS | 35.0% | |
| ! | CTTTTCCTTTCAATAATCCC+TGG | - | chr1_4:66545964-66545983 | None:intergenic | 35.0% |
| TTGTGGATATGATGATTGAG+CGG | + | chr1_4:66546019-66546038 | Msa0179130:CDS | 35.0% | |
| GCAACTATAGTTGCAACTTA+TGG | + | chr1_4:66546078-66546097 | Msa0179130:CDS | 35.0% | |
| CTTGCTGGAAAATTAATTGC+TGG | - | chr1_4:66546150-66546169 | None:intergenic | 35.0% | |
| AGCTCTTGTAAATCTGTTGA+TGG | + | chr1_4:66546354-66546373 | Msa0179130:CDS | 35.0% | |
| AGCAAAGATTAAGTCAGCAA+AGG | + | chr1_4:66546458-66546477 | Msa0179130:CDS | 35.0% | |
| ! | GTACTTCTGTGTGATCTTTT+TGG | - | chr1_4:66546518-66546537 | None:intergenic | 35.0% |
| ACATGTCTCAAGACTTGAAA+AGG | + | chr1_4:66546563-66546582 | Msa0179130:CDS | 35.0% | |
| AAGACTTGAAAAGGAAGTTC+AGG | + | chr1_4:66546572-66546591 | Msa0179130:CDS | 35.0% | |
| ! | TTGAAATCGACCTTTTCTTC+TGG | + | chr1_4:66546630-66546649 | Msa0179130:CDS | 35.0% |
| TAATGCTTCACCAGAAGAAA+AGG | - | chr1_4:66546643-66546662 | None:intergenic | 35.0% | |
| ATTGGAAAGAGAGAAGTTAC+AGG | + | chr1_4:66546746-66546765 | Msa0179130:CDS | 35.0% | |
| !! | GAAGTTACAGGTTTTATCAC+AGG | + | chr1_4:66546758-66546777 | Msa0179130:CDS | 35.0% |
| ! | TTTGTCTGTAGTTTTCGACT+CGG | - | chr1_4:66546788-66546807 | None:intergenic | 35.0% |
| TACAGACAAAGAAAGAGTCA+TGG | + | chr1_4:66546798-66546817 | Msa0179130:CDS | 35.0% | |
| GAGAAGGAGAAAATGAAGTT+CGG | + | chr1_4:66546885-66546904 | Msa0179130:CDS | 35.0% | |
| AGAAGGAGAAAATGAAGTTC+GGG | + | chr1_4:66546886-66546905 | Msa0179130:CDS | 35.0% | |
| CTTCTTCATTTGTCTCCAAA+CGG | - | chr1_4:66546950-66546969 | None:intergenic | 35.0% | |
| AACATAAATCCAGACTTGAG+AGG | + | chr1_4:66547000-66547019 | Msa0179130:CDS | 35.0% | |
| ACATAAATCCAGACTTGAGA+GGG | + | chr1_4:66547001-66547020 | Msa0179130:CDS | 35.0% | |
| !! | ACTTTAAAATGGGAACACGA+GGG | - | chr1_4:66547217-66547236 | None:intergenic | 35.0% |
| !! | AACTTTAAAATGGGAACACG+AGG | - | chr1_4:66547218-66547237 | None:intergenic | 35.0% |
| CTAGAATGAAAGACAAAGAC+AGG | - | chr1_4:66547308-66547327 | None:intergenic | 35.0% | |
| CTGTCTTTGTCTTTCATTCT+AGG | + | chr1_4:66547306-66547325 | Msa0179130:intron | 35.0% | |
| AACGAAAACCAAGTTTGAGA+GGG | - | chr1_4:66547520-66547539 | None:intergenic | 35.0% | |
| AAACGAAAACCAAGTTTGAG+AGG | - | chr1_4:66547521-66547540 | None:intergenic | 35.0% | |
| ! | TAAGGAATGGTGGAATGGTA+GGG | - | chr1_4:66544587-66544606 | None:intergenic | 40.0% |
| ! | TTAAGGAATGGTGGAATGGT+AGG | - | chr1_4:66544588-66544607 | None:intergenic | 40.0% |
| !!! | GGGTTTTGAATCGGTAAACA+AGG | - | chr1_4:66544640-66544659 | None:intergenic | 40.0% |
| !!! | AAGGAATCCACTTTTTTGCG+CGG | - | chr1_4:66545044-66545063 | None:intergenic | 40.0% |
| TTGCATTAAGCTTTACCTCG+CGG | - | chr1_4:66545353-66545372 | None:intergenic | 40.0% | |
| ATAGGCTGGACATTAGTTGA+CGG | + | chr1_4:66545378-66545397 | Msa0179130:intron | 40.0% | |
| CAATGCTTCTTTGGACAATC+GGG | - | chr1_4:66545622-66545641 | None:intergenic | 40.0% | |
| ACACCCTCTATTAATGGAGA+AGG | + | chr1_4:66545652-66545671 | Msa0179130:CDS | 40.0% | |
| ! | GGACTTGAGTTCACTCTTTT+GGG | - | chr1_4:66545914-66545933 | None:intergenic | 40.0% |
| CGAAGATGAACTTTCTTCAC+TGG | + | chr1_4:66546056-66546075 | Msa0179130:CDS | 40.0% | |
| AATGACGACATTCTTCTTGC+TGG | - | chr1_4:66546165-66546184 | None:intergenic | 40.0% | |
| AGCAAGAAGAATGTCGTCAT+TGG | + | chr1_4:66546164-66546183 | Msa0179130:CDS | 40.0% | |
| GCAAGAAGAATGTCGTCATT+GGG | + | chr1_4:66546165-66546184 | Msa0179130:CDS | 40.0% | |
| CATGACAAGACTTGAAAGAG+AGG | + | chr1_4:66546275-66546294 | Msa0179130:CDS | 40.0% | |
| GTGAAGCCAAGAAAAACCAT+AGG | + | chr1_4:66546301-66546320 | Msa0179130:CDS | 40.0% | |
| ! | ATCTGTTGATGGAACTCCAT+CGG | + | chr1_4:66546365-66546384 | Msa0179130:CDS | 40.0% |
| !! | ACCTGATTTGGGAAGTATTC+TGG | + | chr1_4:66546395-66546414 | Msa0179130:CDS | 40.0% |
| ACCAGAATACTTCCCAAATC+AGG | - | chr1_4:66546399-66546418 | None:intergenic | 40.0% | |
| AAGTCAGCAAAGGAAATGCT+AGG | + | chr1_4:66546468-66546487 | Msa0179130:CDS | 40.0% | |
| !! | AAAGATCACACAGAAGTACC+AGG | + | chr1_4:66546519-66546538 | Msa0179130:CDS | 40.0% |
| ! | AGAGGAAAACATTGATGGGT+TGG | + | chr1_4:66546695-66546714 | Msa0179130:CDS | 40.0% |
| !!! | TGATGGGTTGGAGAAGATTT+TGG | + | chr1_4:66546707-66546726 | Msa0179130:CDS | 40.0% |
| TCTCTTTCCAATCTGTGTAC+TGG | - | chr1_4:66546738-66546757 | None:intergenic | 40.0% | |
| !! | TTTTGGTTAAGCGCGTATCT+AGG | + | chr1_4:66546859-66546878 | Msa0179130:CDS | 40.0% |
| GAAGGAGAAAATGAAGTTCG+GGG | + | chr1_4:66546887-66546906 | Msa0179130:CDS | 40.0% | |
| AAATGAAGTTCGGGGATGAA+TGG | + | chr1_4:66546895-66546914 | Msa0179130:CDS | 40.0% | |
| AATGAAGTTCGGGGATGAAT+GGG | + | chr1_4:66546896-66546915 | Msa0179130:CDS | 40.0% | |
| TTGTCTCCAAACGGTTGTTT+CGG | - | chr1_4:66546941-66546960 | None:intergenic | 40.0% | |
| CGTTTGGAGACAAATGAAGA+AGG | + | chr1_4:66546948-66546967 | Msa0179130:CDS | 40.0% | |
| TTGGAGACAAATGAAGAAGG+TGG | + | chr1_4:66546951-66546970 | Msa0179130:CDS | 40.0% | |
| ! | AACCTTGTCTTGTTCAAGCT+TGG | - | chr1_4:66547162-66547181 | None:intergenic | 40.0% |
| TTAAAGCTGAAGCTGAGGAA+AGG | + | chr1_4:66547338-66547357 | Msa0179130:CDS | 40.0% | |
| TGAGGAAAGGAATCAAGCAA+CGG | + | chr1_4:66547351-66547370 | Msa0179130:CDS | 40.0% | |
| ACGAAAACCAAGTTTGAGAG+GGG | - | chr1_4:66547519-66547538 | None:intergenic | 40.0% | |
| AAGAGGAGGAGAATCGGAAT+CGG | - | chr1_4:66544518-66544537 | None:intergenic | 45.0% | |
| TCCTCTGTCAGATCCAAGAT+CGG | + | chr1_4:66544553-66544572 | Msa0179130:CDS | 45.0% | |
| TGTCAGATCCAAGATCGGAA+AGG | + | chr1_4:66544558-66544577 | Msa0179130:CDS | 45.0% | |
| TAGGGTTACCTTTCCGATCT+TGG | - | chr1_4:66544569-66544588 | None:intergenic | 45.0% | |
| ! | ATAGGAGAAGTTTTACGGCG+TGG | - | chr1_4:66545011-66545030 | None:intergenic | 45.0% |
| TTGCGCGGAAACCAGTTAAT+AGG | - | chr1_4:66545029-66545048 | None:intergenic | 45.0% | |
| ! | AAGTGGATTCCTTCTTGGAG+AGG | + | chr1_4:66545051-66545070 | Msa0179130:CDS | 45.0% |
| TTGACGCTTGATCAGACTCT+TGG | + | chr1_4:66545202-66545221 | Msa0179130:CDS | 45.0% | |
| TGAGCTTCTGCTTCATCACT+AGG | - | chr1_4:66545523-66545542 | None:intergenic | 45.0% | |
| AAGTGCAACTGAAGCTTTCG+AGG | + | chr1_4:66545561-66545580 | Msa0179130:CDS | 45.0% | |
| !!! | AGTTCACTCTTTTGGGACAC+TGG | - | chr1_4:66545907-66545926 | None:intergenic | 45.0% |
| ! | CGGACTTGAGTTCACTCTTT+TGG | - | chr1_4:66545915-66545934 | None:intergenic | 45.0% |
| TGAACTCAAGTCCGAAGACT+TGG | + | chr1_4:66545921-66545940 | Msa0179130:CDS | 45.0% | |
| CTTTCTCGATGTTCCATCCA+AGG | - | chr1_4:66546205-66546224 | None:intergenic | 45.0% | |
| CTTGGATGGAACATCGAGAA+AGG | + | chr1_4:66546203-66546222 | Msa0179130:CDS | 45.0% | |
| GGAACATCGAGAAAGGATCA+TGG | + | chr1_4:66546210-66546229 | Msa0179130:CDS | 45.0% | |
| AAATCAGGTATGCACTCCGA+TGG | - | chr1_4:66546384-66546403 | None:intergenic | 45.0% | |
| ATCGGAGTGCATACCTGATT+TGG | + | chr1_4:66546383-66546402 | Msa0179130:CDS | 45.0% | |
| TCGGAGTGCATACCTGATTT+GGG | + | chr1_4:66546384-66546403 | Msa0179130:CDS | 45.0% | |
| !! | GAAATGCTAGGAGCATCAAG+TGG | + | chr1_4:66546480-66546499 | Msa0179130:CDS | 45.0% |
| !! | GTGTGATCTTTTTGGCCTCT+AGG | - | chr1_4:66546510-66546529 | None:intergenic | 45.0% |
| !! | AGAAGTACCAGGCTTAGACA+AGG | + | chr1_4:66546530-66546549 | Msa0179130:CDS | 45.0% |
| ACTAAGACCTTGTCTAAGCC+TGG | - | chr1_4:66546540-66546559 | None:intergenic | 45.0% | |
| ! | CTCATTGGCTGTTCTCTTTC+TGG | - | chr1_4:66546601-66546620 | None:intergenic | 45.0% |
| GGTAAAGCCAGTACACAGAT+TGG | + | chr1_4:66546728-66546747 | Msa0179130:CDS | 45.0% | |
| ATGAAGTTCGGGGATGAATG+GGG | + | chr1_4:66546897-66546916 | Msa0179130:CDS | 45.0% | |
| AAGTCACCGAAACAACCGTT+TGG | + | chr1_4:66546932-66546951 | Msa0179130:CDS | 45.0% | |
| GAGACAAATGAAGAAGGTGG+TGG | + | chr1_4:66546954-66546973 | Msa0179130:CDS | 45.0% | |
| ! | ACAAATGAAGAAGGTGGTGG+TGG | + | chr1_4:66546957-66546976 | Msa0179130:CDS | 45.0% |
| ! | CATCTTTTCCCTCTCAAGTC+TGG | - | chr1_4:66547012-66547031 | None:intergenic | 45.0% |
| CAGACTTGAGAGGGAAAAGA+TGG | + | chr1_4:66547010-66547029 | Msa0179130:CDS | 45.0% | |
| CGAGCCACAGAAAAACTAAC+TGG | - | chr1_4:66547062-66547081 | None:intergenic | 45.0% | |
| TTAGGAAACTCCATGAAGCC+TGG | + | chr1_4:66547131-66547150 | Msa0179130:CDS | 45.0% | |
| CTCCAAGCTTGAACAAGACA+AGG | + | chr1_4:66547157-66547176 | Msa0179130:CDS | 45.0% | |
| ! | CTCAGCTTCAGCTTTAATCC+AGG | - | chr1_4:66547335-66547354 | None:intergenic | 45.0% |
| CTGGATTAAAGCTGAAGCTG+AGG | + | chr1_4:66547333-66547352 | Msa0179130:CDS | 45.0% | |
| ATACTAGCCCCTCTCAAACT+TGG | + | chr1_4:66547509-66547528 | Msa0179130:three_prime_UTR | 45.0% | |
| TCGGTGGAGTGATTCGTTGA+CGG | - | chr1_4:66544499-66544518 | None:intergenic | 50.0% | |
| ACGAGGAAGAGGAGGAGAAT+CGG | - | chr1_4:66544524-66544543 | None:intergenic | 50.0% | |
| TTGGATCTGACAGAGGAGGT+AGG | - | chr1_4:66544550-66544569 | None:intergenic | 50.0% | |
| GATCTTGGATCTGACAGAGG+AGG | - | chr1_4:66544554-66544573 | None:intergenic | 50.0% | |
| TCCGATCTTGGATCTGACAG+AGG | - | chr1_4:66544557-66544576 | None:intergenic | 50.0% | |
| CTGGTTTCCGCGCAAAAAAG+TGG | + | chr1_4:66545034-66545053 | Msa0179130:CDS | 50.0% | |
| AGCTAGAGAAGCAGCACACA+AGG | + | chr1_4:66545270-66545289 | Msa0179130:CDS | 50.0% | |
| AGAAGCAGCACACAAGGCAA+TGG | + | chr1_4:66545276-66545295 | Msa0179130:CDS | 50.0% | |
| TCGAAGAACTGCTTTGGTGG+AGG | + | chr1_4:66545303-66545322 | Msa0179130:CDS | 50.0% | |
| ! | AATTGCTGGATTGGGCTGCT+TGG | - | chr1_4:66546136-66546155 | None:intergenic | 50.0% |
| TTGCGAAAGTCAGCCTTGGA+TGG | + | chr1_4:66546189-66546208 | Msa0179130:CDS | 50.0% | |
| GAGTCATGGAGCCACTAATG+TGG | + | chr1_4:66546812-66546831 | Msa0179130:CDS | 50.0% | |
| TCATGGAGCCACTAATGTGG+CGG | + | chr1_4:66546815-66546834 | Msa0179130:CDS | 50.0% | |
| CTCACAATCCGCCACATTAG+TGG | - | chr1_4:66546826-66546845 | None:intergenic | 50.0% | |
| !! | TGTGGCGGATTGTGAGAGTT+TGG | + | chr1_4:66546830-66546849 | Msa0179130:CDS | 50.0% |
| ! | TGGTGGTCTGGACCAAGTTT+TGG | + | chr1_4:66546974-66546993 | Msa0179130:CDS | 50.0% |
| ! | TTTTTCTGTGGCTCGACGCA+AGG | + | chr1_4:66547067-66547086 | Msa0179130:CDS | 50.0% |
| AGAGAGAGTTGGAAGAAGCC+TGG | + | chr1_4:66547096-66547115 | Msa0179130:CDS | 50.0% | |
| GAGAGAGTTGGAAGAAGCCT+GGG | + | chr1_4:66547097-66547116 | Msa0179130:CDS | 50.0% | |
| AGAGAGTTGGAAGAAGCCTG+GGG | + | chr1_4:66547098-66547117 | Msa0179130:CDS | 50.0% | |
| TGTTCAAGCTTGGAGACACC+AGG | - | chr1_4:66547152-66547171 | None:intergenic | 50.0% | |
| GTCTTTCATTCTAGGCTGCC+TGG | + | chr1_4:66547314-66547333 | Msa0179130:intron | 50.0% | |
| AGGAGGAGAATCGGAATCGG+TGG | - | chr1_4:66544515-66544534 | None:intergenic | 55.0% | |
| GTAGGAGAACGAGGAAGAGG+AGG | - | chr1_4:66544532-66544551 | None:intergenic | 55.0% | |
| GAGGTAGGAGAACGAGGAAG+AGG | - | chr1_4:66544535-66544554 | None:intergenic | 55.0% | |
| ACAGAGGAGGTAGGAGAACG+AGG | - | chr1_4:66544541-66544560 | None:intergenic | 55.0% | |
| ! | GGAGAAGTTTTACGGCGTGG+AGG | - | chr1_4:66545008-66545027 | None:intergenic | 55.0% |
| AGCAGCACACAAGGCAATGG+AGG | + | chr1_4:66545279-66545298 | Msa0179130:CDS | 55.0% | |
| GGAGGCTCGAAGAACTGCTT+TGG | + | chr1_4:66545297-66545316 | Msa0179130:CDS | 55.0% | |
| GGCTCGAAGAACTGCTTTGG+TGG | + | chr1_4:66545300-66545319 | Msa0179130:CDS | 55.0% | |
| !! | CTGCTTTGGTGGAGGCATCT+TGG | + | chr1_4:66545311-66545330 | Msa0179130:CDS | 55.0% |
| ACCTCGCGGCGCGTAAAATT+CGG | - | chr1_4:66545339-66545358 | None:intergenic | 55.0% | |
| TGAAGCTTTCGAGGCAGCTG+AGG | + | chr1_4:66545570-66545589 | Msa0179130:CDS | 55.0% | |
| TTTCGAGGCAGCTGAGGCTA+TGG | + | chr1_4:66545576-66545595 | Msa0179130:CDS | 55.0% | |
| TTCGAGGCAGCTGAGGCTAT+GGG | + | chr1_4:66545577-66545596 | Msa0179130:CDS | 55.0% | |
| ! | TGAAGGGCGTGTTGCAAGCT+TGG | - | chr1_4:66545764-66545783 | None:intergenic | 55.0% |
| GGGATTGCGAAAGTCAGCCT+TGG | + | chr1_4:66546185-66546204 | Msa0179130:CDS | 55.0% | |
| GCATCAAGTGGCATGCCTAG+AGG | + | chr1_4:66546492-66546511 | Msa0179130:CDS | 55.0% | |
| GCGCGTATCTAGGCTAGAGA+AGG | + | chr1_4:66546869-66546888 | Msa0179130:CDS | 55.0% | |
| !! | TGAAGAAGGTGGTGGTGGTC+TGG | + | chr1_4:66546962-66546981 | Msa0179130:CDS | 55.0% |
| CAAGGCAAGGGAGAGAGAGT+TGG | + | chr1_4:66547085-66547104 | Msa0179130:CDS | 55.0% | |
| CTTGGAGACACCAGGCTTCA+TGG | - | chr1_4:66547144-66547163 | None:intergenic | 55.0% | |
| TGTGGCTCGACGCAAGGCAA+GGG | + | chr1_4:66547073-66547092 | Msa0179130:CDS | 60.0% | |
| GAGTTGGAAGAAGCCTGGGG+AGG | + | chr1_4:66547101-66547120 | Msa0179130:CDS | 60.0% | |
| TCCTAAGCTCAGTCCTCCCC+AGG | - | chr1_4:66547117-66547136 | None:intergenic | 60.0% | |
| ! | GCCGAATTTTACGCGCCGCG+AGG | + | chr1_4:66545335-66545354 | Msa0179130:CDS | 65.0% |
| CTGTGGCTCGACGCAAGGCA+AGG | + | chr1_4:66547072-66547091 | Msa0179130:CDS | 65.0% | |
| GCCTGGGGAGGACTGAGCTT+AGG | + | chr1_4:66547113-66547132 | Msa0179130:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 66544329 | 66547590 | 66544329 | ID=Msa0179130;Name=Msa0179130 |
| chr1_4 | mRNA | 66544329 | 66547590 | 66544329 | ID=Msa0179130-mRNA-1;Parent=Msa0179130;Name=Msa0179130-mRNA-1;_AED=0.01;_eAED=0.01;_QI=143|1|1|1|1|1|5|206|719 |
| chr1_4 | exon | 66544329 | 66544579 | 66544329 | ID=Msa0179130-mRNA-1:exon:21788;Parent=Msa0179130-mRNA-1 |
| chr1_4 | exon | 66544933 | 66545091 | 66544933 | ID=Msa0179130-mRNA-1:exon:21789;Parent=Msa0179130-mRNA-1 |
| chr1_4 | exon | 66545184 | 66545356 | 66545184 | ID=Msa0179130-mRNA-1:exon:21790;Parent=Msa0179130-mRNA-1 |
| chr1_4 | exon | 66545516 | 66547178 | 66545516 | ID=Msa0179130-mRNA-1:exon:21791;Parent=Msa0179130-mRNA-1 |
| chr1_4 | exon | 66547328 | 66547590 | 66547328 | ID=Msa0179130-mRNA-1:exon:21792;Parent=Msa0179130-mRNA-1 |
| chr1_4 | five_prime_UTR | 66544329 | 66544471 | 66544329 | ID=Msa0179130-mRNA-1:five_prime_utr;Parent=Msa0179130-mRNA-1 |
| chr1_4 | CDS | 66544472 | 66544579 | 66544472 | ID=Msa0179130-mRNA-1:cds;Parent=Msa0179130-mRNA-1 |
| chr1_4 | CDS | 66544933 | 66545091 | 66544933 | ID=Msa0179130-mRNA-1:cds;Parent=Msa0179130-mRNA-1 |
| chr1_4 | CDS | 66545184 | 66545356 | 66545184 | ID=Msa0179130-mRNA-1:cds;Parent=Msa0179130-mRNA-1 |
| chr1_4 | CDS | 66545516 | 66547178 | 66545516 | ID=Msa0179130-mRNA-1:cds;Parent=Msa0179130-mRNA-1 |
| chr1_4 | CDS | 66547328 | 66547384 | 66547328 | ID=Msa0179130-mRNA-1:cds;Parent=Msa0179130-mRNA-1 |
| chr1_4 | three_prime_UTR | 66547385 | 66547590 | 66547385 | ID=Msa0179130-mRNA-1:three_prime_utr;Parent=Msa0179130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
