AlfalfaGEDB | Msa1292590

M. sativa cultivar zhongmu-4 / Msa1292590

KEGG: K20283|K20478
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1292590	XP_013446111.1	92.568	767	56	1	1	767	1	766	0.0	1387

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1292590	sp\|P0CB23\|Y4862_ARATH	47.018	570	286	5	1	569	1	555	3.33e-129	413
Msa1292590	sp\|P0CB23\|Y4862_ARATH	42.991	214	78	2	481	666	634	831	2.20e-29	129

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1292590	A0A072TTF3	92.568	767	56	1	1	767	1	766	0.0	1387

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005890	Msa1292590	0.843707	1.187331e-58	-8.615850e-47
Msa0017950	Msa1292590	0.809474	1.858704e-50	-8.615850e-47
Msa0036870	Msa1292590	0.802010	6.872635e-49	-8.615850e-47
Msa0048510	Msa1292590	0.808114	3.631329e-50	-8.615850e-47
Msa0052480	Msa1292590	0.804720	1.886183e-49	-8.615850e-47
Msa0081570	Msa1292590	0.803876	2.827545e-49	-8.615850e-47
Msa0094780	Msa1292590	0.839691	1.361606e-57	-8.615850e-47
Msa0097770	Msa1292590	0.816124	6.501080e-52	-8.615850e-47
Msa0133280	Msa1292590	0.811673	6.223194e-51	-8.615850e-47
Msa0190570	Msa1292590	0.821467	3.974719e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1292590	MtrunA17_Chr8g0367551	92.568	767	56	1	1	767	1	766	0.0	1387
Msa1292590	MtrunA17_Chr2g0279621	33.384	656	371	7	5	646	6	609	2.56e-81	278
Msa1292590	MtrunA17_Chr5g0412231	52.966	236	95	3	206	441	95	314	1.17e-58	212
Msa1292590	MtrunA17_Chr5g0412231	51.754	114	52	2	1	114	1	111	1.27e-17	87.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1292590	AT4G38062.1	47.018	570	286	5	1	569	1	555	3.38e-130	413
Msa1292590	AT4G38062.1	42.991	214	78	2	481	666	634	831	2.23e-30	129

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Find 111 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAACTAAGTGAAAGAGA+TGG	0.616970	8_3:+48925405	Msa1292590:CDS
AAAGGCGGACGAAATTGCCG+AGG	0.683072	8_3:+48925095	Msa1292590:CDS
AAATGCTGGAAGAATCAACT+AGG	0.629687	8_3:+48926519	Msa1292590:CDS
AACAAAACTGTCCTTAGAAA+GGG	0.503674	8_3:+48926940	Msa1292590:CDS
AACTGCAGAACGAACTTGAT+AGG	0.483851	8_3:+48926489	Msa1292590:CDS
AAGAATCAACTAGGTGTCAG+CGG	0.678694	8_3:+48926528	Msa1292590:CDS
AAGCCTGAAAAGTTGTCTAT+CGG	0.522014	8_3:+48925335	Msa1292590:CDS
AAGTTGAAGTTTCAGAATTT+AGG	0.309272	8_3:+48925709	Msa1292590:CDS
AATTTGCGAAAGAAGTGAAA+TGG	0.449523	8_3:+48926652	Msa1292590:CDS
ACTCAACAAAGAGAAAGAAG+GGG	0.682960	8_3:+48926283	Msa1292590:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAACTAAGTGAAAGAGA+TGG	+	chr8_3:48925405-48925424	Msa1292590:CDS	30.0%
AGTTGGAAGATCAATTAAAG+TGG	+	chr8_3:48925460-48925479	Msa1292590:CDS	30.0%
AGATCAATTAAAGTGGAAGA+AGG	+	chr8_3:48925467-48925486	Msa1292590:CDS	30.0%
GAAGCATATGAGAAAGTTAA+AGG	+	chr8_3:48925510-48925529	Msa1292590:CDS	30.0%
CTTTCTTGCTAGACTTAAAT+TGG	-	chr8_3:48925536-48925555	None:intergenic	30.0%
GATCCATCTCATCTTTATAA+TGG	-	chr8_3:48926262-48926281	None:intergenic	30.0%
TACTCAACAAAGAGAAAGAA+GGG	+	chr8_3:48926282-48926301	Msa1292590:CDS	30.0%
ATGAAAGATGATGCTTTGAT+CGG	+	chr8_3:48926335-48926354	Msa1292590:CDS	30.0%
AATTTGCGAAAGAAGTGAAA+TGG	+	chr8_3:48926652-48926671	Msa1292590:CDS	30.0%
AACAAAACTGTCCTTAGAAA+GGG	+	chr8_3:48926940-48926959	Msa1292590:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	48924919	48927225	48924919	ID=Msa1292590;Name=Msa1292590
chr8_3	mRNA	48924919	48927225	48924919	ID=Msa1292590-mRNA-1;Parent=Msa1292590;Name=Msa1292590-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|768
chr8_3	exon	48924919	48927225	48924919	ID=Msa1292590-mRNA-1:exon:13567;Parent=Msa1292590-mRNA-1
chr8_3	CDS	48924919	48927225	48924919	ID=Msa1292590-mRNA-1:cds;Parent=Msa1292590-mRNA-1

Gene Sequence

>Msa1292590

ATGGAAAAAGTTTATGAAGAGCTGGATGAAGCAAAAGCTGAGATTGAGAAACTCAAGGCAGAACTAAGAGCAAAATCAGATTCACTTGAGAATTTGAAGAGATCCCTTAATGCACAAGTCAACCAAACACAAGAAGCAAAGTCCAAATCTGAGAAGCTTGATCATGAACTGCTTCAAAAGGCGGACGAAATTGCCGAGGCGAAGAGTTTATATGAAAATCTCAAAGGGAATTTGAAAGAACAAGATTCCATCATCAAACATCTCAAAGCTGCAAACGATAAACTTCGAGTTGATTTCGATGAAAAGATTAAAATGTGGGAAGATGAGAAAAGAGGGTTGGTGTTGGCCTTAGAGGAAGCAAATGACAAGGCAGAGAATCAAGAACAGAAGGTTTGTCAATACAGAAAAGAAATTGAAAGCCTGAAAAGTTGTCTATCGGTTTCGAAGCAGAAGTGTTCGGAATCACAGAAAAAATTAAAATCATCCAAAGAACTAAGTGAAAGAGATGGCATGTTTCAGAAGTTGGAGGAGGAAAAAGAGAAGTTGGAAGATCAATTAAAGTGGAAGAAGGAACAGTTTAAACATCTAGAAGAAGCATATGAGAAAGTTAAAGGCCAATTTAAGTCTAGCAAGAAAGAGTGGGAGATGGAAAAATCTACACTGCTTGATGAGATTTTTTCACTTGAAACTAAATTAGATTCTCAGATCAGAATATCAGAAGATCTTCGACATCAGTTACAGACCTGCCACCAAGCTCTTGCTCATGTAGAAAGTCAGAAAAAGCGACTCGAAGTTGAAGTTTCAGAATTTAGGCTGCAGCTTGATAATGCCGGTAGCGAGTACCACAATGCTAGACTACAGCTCGATTGCTTAAACTCTGATCGTGTCAAAGATATTGCTGATTTGAGATACTTGCTGAAAACAAAAGAGGCGCATATTAAAGAAGCAAAGTACCAAACTGAGAAGCTAGAGCAAGAAAATCAAGAGTTGAGGATGTCTCTCAAAGAACTACAGGAAGCTCAAATTCAAGAAGCAGGTGCTTCATATTCGCAGTCGAAGTTGAGGACCAAGCTTAAAAATTTAGAACAAACACATAAAGAGTGTTCCTTGACTCTTAAGGCTAGAGAGGCCGAATGGGACTCTCGGATAGAACAATTGACTGGACAACTGAATATGTGTCAGTCTGAGCTGGAAGCTAAAATTGCAGCAGTGGAAGAGCTTCAGATGGAGTTGGAAAGTTCTCATTCGATAGCCGTTGAGACAAGGTTGTTGAATGAGGAGATGTCTGTGATGCTGCTAGTGTTGAAACAAGGAATTTCTGAGGCTCAGTTAAGGCTTGCCCATTATAAAGATGAGATGGATCTACTCAACAAAGAGAAAGAAGGGGAAATTTTTCAACTGATGAAGCAGTTGGAGATGAAAGATGATGCTTTGATCGGTGCTCAAAAAGGCTTAAATGAAGAACGCGAGAAAGCAACATGTTTGATGAGGAAGATTGAGTCCTATGGATCCAACAAAGAATTGCAGCACTCACTTCAAAATGAACTTGAGTCCAATGAATGCAACAAAGAACTGCAGAACGAACTTGATAGGTACAAGGAAATGCTGGAAGAATCAACTAGGTGTCAGCGGATCCTCGAAGAGAAGGTTTTGCAGATTGAATGTGAATCAAAAGAACAACTTAGAGAAACACATGAAGCTTTAGACATTGCTATCAATGAACTGGATGAGAGAATTTGCGAAAGAAGTGAAATGGAATTTGAATTGCAAATATGGAAGTCAATTCTCGATCGTTTGAAGAATGATCTTGAAGAAAGCCATTTGATGCGTAAAGAACTAGAAGCTTCACTTCTTGCACAAGTAGATGTTGGTGAAAGCATCAAGCAAGAGAAAGATAAGGCTGTCGAGGAGCTTCAGAAAGAGGCTGTTTTGTTGGAACAAGAATCAATTAGAAGAGAACTTGAGAGTGTTGTGATTGCAAAAGGCACTATGGAAAGAGCCTGTGAGCTGAATGAAAATGCAACAAAACTGTCCTTAGAAAGGGAAAATTTGTTGGCTTTTGTTCAAGGGTTGTATGATAGAATCTACGATTTGTCTAATGCAGACACTCAACTGAGGGACATGTTGAGAAGCATGGAGGAATCTTTTGAGATTGATGGTGCTGGAATGAATTTGAAAAAGGATAATAGCTTTTTCCATGTGAAAGAGAATATGCAAGTTCAAGTTTCTCCTACTAGTAGGATAAAGAAAGTTGAAGCCATTTCTGATACAAGATCTCCATTCAAGGAGCTAAACAGTAGTTGCTAG

Protein sequence

>Msa1292590

MEKVYEELDEAKAEIEKLKAELRAKSDSLENLKRSLNAQVNQTQEAKSKSEKLDHELLQKADEIAEAKSLYENLKGNLKEQDSIIKHLKAANDKLRVDFDEKIKMWEDEKRGLVLALEEANDKAENQEQKVCQYRKEIESLKSCLSVSKQKCSESQKKLKSSKELSERDGMFQKLEEEKEKLEDQLKWKKEQFKHLEEAYEKVKGQFKSSKKEWEMEKSTLLDEIFSLETKLDSQIRISEDLRHQLQTCHQALAHVESQKKRLEVEVSEFRLQLDNAGSEYHNARLQLDCLNSDRVKDIADLRYLLKTKEAHIKEAKYQTEKLEQENQELRMSLKELQEAQIQEAGASYSQSKLRTKLKNLEQTHKECSLTLKAREAEWDSRIEQLTGQLNMCQSELEAKIAAVEELQMELESSHSIAVETRLLNEEMSVMLLVLKQGISEAQLRLAHYKDEMDLLNKEKEGEIFQLMKQLEMKDDALIGAQKGLNEEREKATCLMRKIESYGSNKELQHSLQNELESNECNKELQNELDRYKEMLEESTRCQRILEEKVLQIECESKEQLRETHEALDIAINELDERICERSEMEFELQIWKSILDRLKNDLEESHLMRKELEASLLAQVDVGESIKQEKDKAVEELQKEAVLLEQESIRRELESVVIAKGTMERACELNENATKLSLERENLLAFVQGLYDRIYDLSNADTQLRDMLRSMEESFEIDGAGMNLKKDNSFFHVKENMQVQVSPTSRIKKVEAISDTRSPFKELNSSC*