AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1031780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1031780 MtrunA17_Chr7g0253441 93.373 332 8 2 1 318 155 486 0.0 642
Msa1031780 MtrunA17_Chr5g0411991 43.030 330 163 6 1 311 90 413 2.03e-89 273
Msa1031780 MtrunA17_Chr7g0265451 39.583 336 164 11 1 308 186 510 2.57e-68 221
Msa1031780 MtrunA17_Chr7g0265461 37.609 343 171 10 1 313 69 398 2.04e-65 211
Msa1031780 MtrunA17_Chr1g0179651 37.798 336 171 11 1 308 9 334 2.87e-64 206
Msa1031780 MtrunA17_Chr3g0137491 37.609 343 176 11 1 314 59 392 2.01e-60 197
Msa1031780 MtrunA17_Chr3g0131051 35.799 338 184 8 1 313 162 491 9.65e-59 196
Msa1031780 MtrunA17_Chr4g0055991 34.503 342 180 9 1 308 200 531 1.79e-58 196
Msa1031780 MtrunA17_Chr3g0119721 35.965 342 174 12 1 311 15 342 2.34e-58 191
Msa1031780 MtrunA17_Chr7g0265381 35.569 343 169 12 1 308 44 369 1.14e-57 190
Msa1031780 MtrunA17_Chr4g0064471 35.756 344 172 10 1 308 135 465 1.55e-56 189
Msa1031780 MtrunA17_Chr3g0120131 35.569 343 178 12 1 313 153 482 3.86e-55 186
Msa1031780 MtrunA17_Chr8g0390121 35.673 342 171 12 1 308 279 605 1.11e-54 187
Msa1031780 MtrunA17_Chr1g0197381 36.202 337 175 12 1 310 222 545 1.60e-54 186
Msa1031780 MtrunA17_Chr3g0140131 36.152 343 167 14 1 308 264 589 2.90e-54 186
Msa1031780 MtrunA17_Chr3g0140141 35.191 341 173 12 1 308 222 547 3.34e-54 185
Msa1031780 MtrunA17_Chr1g0146181 35.756 344 167 13 1 308 257 582 1.10e-53 184
Msa1031780 MtrunA17_Chr4g0064461 33.140 344 181 10 1 308 130 460 4.12e-52 178
Msa1031780 MtrunA17_Chr4g0064411 33.618 351 182 13 1 315 129 464 8.43e-50 172
Msa1031780 MtrunA17_Chr5g0421571 40.394 203 102 5 1 189 143 340 1.66e-40 144
Msa1031780 MtrunA17_Chr5g0436111 27.900 319 154 13 1 311 49 299 1.93e-31 119
Msa1031780 MtrunA17_Chr2g0320251 27.302 315 183 10 33 304 115 426 1.43e-25 105
Msa1031780 MtrunA17_Chr4g0028201 26.266 316 185 12 33 304 133 444 2.39e-22 97.1
Msa1031780 MtrunA17_Chr8g0385671 25.397 315 185 9 33 304 77 384 6.29e-22 95.5
Msa1031780 MtrunA17_Chr8g0385651 25.079 315 186 9 33 304 77 384 6.73e-21 92.4
Msa1031780 MtrunA17_Chr4g0039811 27.143 280 166 12 43 290 173 446 1.39e-16 80.1
Msa1031780 MtrunA17_Chr3g0092341 24.490 294 186 9 50 311 188 477 2.56e-16 79.3
Msa1031780 MtrunA17_Chr6g0460631 25.000 288 167 11 51 300 185 461 3.23e-13 70.1
Msa1031780 MtrunA17_Chr1g0159421 25.965 285 166 12 4 248 73 352 5.25e-13 69.3
Msa1031780 MtrunA17_Chr4g0043801 24.638 276 166 11 52 290 163 433 2.55e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1031780 AT4G38040.1 45.706 326 152 7 1 307 100 419 2.07e-91 279
Msa1031780 AT4G38040.2 43.046 302 147 7 1 283 100 395 1.66e-73 232
Msa1031780 AT4G16745.1 37.758 339 167 10 1 305 196 524 8.33e-65 213
Msa1031780 AT5G03795.1 38.938 339 172 11 1 313 186 515 1.34e-63 209
Msa1031780 AT4G16745.2 37.764 331 162 10 1 297 196 516 1.67e-59 200
Msa1031780 AT5G37000.1 36.686 338 172 10 1 308 222 547 7.11e-59 198
Msa1031780 AT5G11130.2 34.957 349 182 11 1 317 1 336 1.12e-56 187
Msa1031780 AT5G11610.1 37.092 337 172 13 1 308 216 541 2.38e-56 191
Msa1031780 AT5G11130.1 34.957 349 182 11 1 317 145 480 2.63e-55 187
Msa1031780 AT4G32790.1 36.337 344 166 12 1 308 263 589 2.66e-54 187
Msa1031780 AT4G32790.3 36.337 344 166 12 1 308 263 589 2.66e-54 187
Msa1031780 AT4G32790.2 36.337 344 166 12 1 308 263 589 2.66e-54 187
Msa1031780 AT5G19670.1 34.493 345 171 12 1 308 277 603 2.15e-53 184
Msa1031780 AT5G19670.2 34.493 345 171 12 1 308 277 603 2.15e-53 184
Msa1031780 AT5G20260.1 34.412 340 185 12 1 311 1 331 5.16e-53 177
Msa1031780 AT5G20260.3 34.412 340 185 12 1 311 28 358 1.07e-52 177
Msa1031780 AT5G25310.1 34.582 347 181 9 1 314 147 480 1.08e-52 180
Msa1031780 AT3G07620.1 35.191 341 185 11 1 314 128 459 1.79e-52 179
Msa1031780 AT5G20260.2 34.718 337 182 12 1 308 133 460 5.78e-52 178
Msa1031780 AT5G25820.1 36.102 313 157 11 31 308 344 648 9.09e-52 181
Msa1031780 AT3G42180.4 34.628 309 172 8 31 311 31 337 1.72e-51 173
Msa1031780 AT3G42180.1 35.161 310 169 10 31 311 160 466 2.11e-50 174
Msa1031780 AT5G33290.1 33.628 339 188 12 1 308 161 493 1.25e-46 164
Msa1031780 AT5G11610.2 31.950 241 130 10 1 215 216 448 3.47e-23 99.8
Msa1031780 AT5G61840.1 25.397 315 185 9 33 304 76 383 1.50e-21 94.7
Msa1031780 AT2G28110.1 24.921 317 190 10 33 304 120 433 3.34e-21 94.0
Msa1031780 AT1G27440.1 24.444 315 188 9 33 304 73 380 1.82e-19 88.6
Msa1031780 AT5G11610.3 41.379 116 52 5 1 104 216 327 8.84e-16 77.4
Msa1031780 AT3G03650.1 26.224 286 168 11 51 301 195 472 4.22e-14 73.2
Msa1031780 AT3G45400.1 24.823 282 173 11 52 300 157 432 6.96e-13 69.3
Msa1031780 AT1G74680.1 25.781 256 139 9 51 266 151 395 1.07e-12 68.9

Find 52 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATGGTTATGTATGAATTA+TGG 0.236996 7_1:-66479000 Msa1031780:CDS
AAGTTCTATACCTATTGTTT+TGG 0.284491 7_1:-66478969 Msa1031780:CDS
TGACTTTGATGCATTCTATA+TGG 0.287970 7_1:-66479017 Msa1031780:CDS
ATGCATGCCTACCACAAATT+TGG 0.291197 7_1:-66479795 Msa1031780:CDS
CGTAGACTTGCTATGGAAAA+AGG 0.292417 7_1:+66480051 None:intergenic
ATTGGTGATTCATTATACTA+TGG 0.326408 7_1:-66479247 Msa1031780:CDS
CTGAAAGGTATAGTTAGTTC+TGG 0.366270 7_1:-66479109 Msa1031780:CDS
CCATACGGTGATGAGTTATT+AGG 0.385062 7_1:-66479319 Msa1031780:CDS
AAGTGGTTATATTGCTCATA+AGG 0.385596 7_1:-66479818 Msa1031780:CDS
TATGTGGCATGTCATTCAAT+TGG 0.444024 7_1:-66479916 Msa1031780:CDS
TCATCAAGTTATTTCTTAAG+TGG 0.445359 7_1:-66479835 Msa1031780:CDS
AGAAGAATGTGTTGAAGGTA+AGG 0.445791 7_1:-66479069 Msa1031780:CDS
TAATAGTTGGCAATGATCAC+TGG 0.452560 7_1:+66479217 None:intergenic
TTTCTTGAAGTAACTTTCAC+TGG 0.456582 7_1:+66480134 None:intergenic
AAAAGGAAGGTCATAATAGT+TGG 0.482102 7_1:+66479204 None:intergenic
ATGGCATTGAATTTCACATC+AGG 0.483309 7_1:+66479871 None:intergenic
TTCACTGGCATAATTGCCAC+CGG 0.483530 7_1:+66480149 None:intergenic
TGATGAACAAACAACTTGAA+TGG 0.484985 7_1:+66479852 None:intergenic
CTATTTGATGAAACAAGGTT+GGG 0.490527 7_1:+66479754 None:intergenic
TGATTCACAAGTATCCGTAT+TGG 0.495104 7_1:-66479966 Msa1031780:CDS
CCTATTTGATGAAACAAGGT+TGG 0.500790 7_1:+66479753 None:intergenic
CCACCGGTGCGGTTCCAATA+CGG 0.501589 7_1:+66479952 None:intergenic
CAATTCAAAATATCTGCAAA+AGG 0.508336 7_1:+66479187 None:intergenic
ATCATGCCGTAGACTTGCTA+TGG 0.511496 7_1:+66480044 None:intergenic
TCGACAAGATTTATCCGTAC+TGG 0.518253 7_1:+66479394 None:intergenic
GGTAATAGCACATTTGCAAA+AGG 0.529147 7_1:+66480186 None:intergenic
TTCAATTGGAAGGTCTGCTA+TGG 0.532886 7_1:-66479902 Msa1031780:CDS
GCATGATCGTCGAGTTGGTG+TGG 0.534409 7_1:-66480028 Msa1031780:CDS
GAAGTGAACACAGCACGTAT+TGG 0.536936 7_1:-66479265 Msa1031780:CDS
GAAGAATGTGTTGAAGGTAA+GGG 0.537595 7_1:-66479068 Msa1031780:CDS
TTCTTGGCCAAATTTGTGGT+AGG 0.544146 7_1:+66479788 None:intergenic
ATAAAAGTGATCCGCGCCAC+CGG 0.547434 7_1:+66479936 None:intergenic
GAGAAGTGAATTCGCCAGTA+CGG 0.551348 7_1:-66479408 Msa1031780:CDS
GCTACAGAAGAATGTGTTGA+AGG 0.551649 7_1:-66479074 Msa1031780:CDS
CCTAATAACTCATCACCGTA+TGG 0.554944 7_1:+66479319 None:intergenic
GGATAAATCTTGTCGAGACA+TGG 0.555807 7_1:-66479387 Msa1031780:CDS
TTGGAACCGCACCGGTGGCG+CGG 0.557524 7_1:-66479947 Msa1031780:CDS
TCAAAATATCTGCAAAAGGA+AGG 0.557935 7_1:+66479191 None:intergenic
TTTGATGAAACAAGGTTGGG+TGG 0.562781 7_1:+66479757 None:intergenic
TACTGGCGAATTCACTTCTC+CGG 0.566201 7_1:+66479411 None:intergenic
CTACGGCATGATCGTCGAGT+TGG 0.573970 7_1:-66480033 Msa1031780:CDS
ACAGAAATCTTTGTTCACAA+TGG 0.577531 7_1:-66479355 Msa1031780:CDS
CATGATCGTCGAGTTGGTGT+GGG 0.578419 7_1:-66480027 Msa1031780:CDS
CCGTATTGGAACCGCACCGG+TGG 0.597029 7_1:-66479952 Msa1031780:CDS
TGGCATGTCATTCAATTGGA+AGG 0.599398 7_1:-66479912 Msa1031780:CDS
TATCCGTATTGGAACCGCAC+CGG 0.608918 7_1:-66479955 Msa1031780:CDS
TAGAATGCATCAAAGTCAAG+TGG 0.609625 7_1:+66479022 None:intergenic
GATCGTCGAGTTGGTGTGGG+AGG 0.616478 7_1:-66480024 Msa1031780:intron
AATGCATCAAAGTCAAGTGG+AGG 0.658492 7_1:+66479025 None:intergenic
TTACCCGTGAAAACTGAACC+CGG 0.660789 7_1:-66480168 Msa1031780:CDS
TCACTGGCATAATTGCCACC+GGG 0.685601 7_1:+66480150 None:intergenic
CCCGTGAAAACTGAACCCGG+TGG 0.789625 7_1:-66480165 Msa1031780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATTTAAAATCTAGTTT+TGG + chr7_1:66479609-66479628 None:intergenic 10.0%
!!! ATTAATTTAAAATCTAGTTT+TGG + chr7_1:66479609-66479628 None:intergenic 10.0%
!!! ACTAGATTTTAAATTAATAG+AGG - chr7_1:66479611-66479630 Msa1031780:intron 15.0%
!!! ACTAGATTTTAAATTAATAG+AGG - chr7_1:66479611-66479630 Msa1031780:intron 15.0%
!!! ATCAACATGTTTTATATCAT+CGG - chr7_1:66479530-66479549 Msa1031780:intron 20.0%
!!! TTCAGAATCTTTTTCAATAA+AGG + chr7_1:66480068-66480087 None:intergenic 20.0%
!! TTATTGAAAAAGATTCTGAA+AGG - chr7_1:66480068-66480087 Msa1031780:CDS 20.0%
!! ATATGGTTATGTATGAATTA+TGG - chr7_1:66480192-66480211 Msa1031780:CDS 20.0%
!!! ATCAACATGTTTTATATCAT+CGG - chr7_1:66479530-66479549 Msa1031780:intron 20.0%
!!! TTCAGAATCTTTTTCAATAA+AGG + chr7_1:66480068-66480087 None:intergenic 20.0%
!! TTATTGAAAAAGATTCTGAA+AGG - chr7_1:66480068-66480087 Msa1031780:CDS 20.0%
!! ATATGGTTATGTATGAATTA+TGG - chr7_1:66480192-66480211 Msa1031780:CDS 20.0%
!! TTGGATCTTTTGTAATGAAA+TGG + chr7_1:66479098-66479117 None:intergenic 25.0%
!!! TCATCAAGTTATTTCTTAAG+TGG - chr7_1:66479357-66479376 Msa1031780:CDS 25.0%
!!! CTCCTATTTTTAATCACTAA+CGG + chr7_1:66479644-66479663 None:intergenic 25.0%
!!! TTTGCTTTTGTAAAAATGAC+AGG - chr7_1:66479739-66479758 Msa1031780:intron 25.0%
!! ATTGGTGATTCATTATACTA+TGG - chr7_1:66479945-66479964 Msa1031780:CDS 25.0%
! CAATTCAAAATATCTGCAAA+AGG + chr7_1:66480008-66480027 None:intergenic 25.0%
!!! CTTTTGCAGATATTTTGAAT+TGG - chr7_1:66480006-66480025 Msa1031780:intron 25.0%
!! AAGTTCTATACCTATTGTTT+TGG - chr7_1:66480223-66480242 Msa1031780:CDS 25.0%
!! AGTTCTATACCTATTGTTTT+GGG - chr7_1:66480224-66480243 Msa1031780:CDS 25.0%
!! TTGGATCTTTTGTAATGAAA+TGG + chr7_1:66479098-66479117 None:intergenic 25.0%
!!! TCATCAAGTTATTTCTTAAG+TGG - chr7_1:66479357-66479376 Msa1031780:CDS 25.0%
!!! CTCCTATTTTTAATCACTAA+CGG + chr7_1:66479644-66479663 None:intergenic 25.0%
!!! TTTGCTTTTGTAAAAATGAC+AGG - chr7_1:66479739-66479758 Msa1031780:intron 25.0%
!! ATTGGTGATTCATTATACTA+TGG - chr7_1:66479945-66479964 Msa1031780:CDS 25.0%
! CAATTCAAAATATCTGCAAA+AGG + chr7_1:66480008-66480027 None:intergenic 25.0%
!!! CTTTTGCAGATATTTTGAAT+TGG - chr7_1:66480006-66480025 Msa1031780:intron 25.0%
!! AAGTTCTATACCTATTGTTT+TGG - chr7_1:66480223-66480242 Msa1031780:CDS 25.0%
!! AGTTCTATACCTATTGTTTT+GGG - chr7_1:66480224-66480243 Msa1031780:CDS 25.0%
TTTCTTGAAGTAACTTTCAC+TGG + chr7_1:66479061-66479080 None:intergenic 30.0%
!! AAGAAAAGATCTGCTTTTGT+TGG + chr7_1:66479117-66479136 None:intergenic 30.0%
CATAGTCTCTAATGAAATCT+TGG + chr7_1:66479197-66479216 None:intergenic 30.0%
TGATGAACAAACAACTTGAA+TGG + chr7_1:66479343-66479362 None:intergenic 30.0%
AAGTGGTTATATTGCTCATA+AGG - chr7_1:66479374-66479393 Msa1031780:CDS 30.0%
CTATTTGATGAAACAAGGTT+GGG + chr7_1:66479441-66479460 None:intergenic 30.0%
TAGTAAATGTACCTAGAAAG+AGG + chr7_1:66479476-66479495 None:intergenic 30.0%
!!! CATATTTTTAGACCCAAAAG+TGG + chr7_1:66479576-66479595 None:intergenic 30.0%
! TTTTTAATCACTAACGGAGT+TGG + chr7_1:66479638-66479657 None:intergenic 30.0%
CTCCGTTAGTGATTAAAAAT+AGG - chr7_1:66479639-66479658 Msa1031780:intron 30.0%
CGTTAGTGATTAAAAATAGG+AGG - chr7_1:66479642-66479661 Msa1031780:intron 30.0%
ACAGAAATCTTTGTTCACAA+TGG - chr7_1:66479837-66479856 Msa1031780:CDS 30.0%
! AAGTTCTGTTTTCATGTTAG+AGG - chr7_1:66479900-66479919 Msa1031780:CDS 30.0%
AAAAGGAAGGTCATAATAGT+TGG + chr7_1:66479991-66480010 None:intergenic 30.0%
TCAAAATATCTGCAAAAGGA+AGG + chr7_1:66480004-66480023 None:intergenic 30.0%
TGACTTTGATGCATTCTATA+TGG - chr7_1:66480175-66480194 Msa1031780:CDS 30.0%
!! GTTCTATACCTATTGTTTTG+GGG - chr7_1:66480225-66480244 Msa1031780:CDS 30.0%
!!! TTCTATACCTATTGTTTTGG+GGG - chr7_1:66480226-66480245 Msa1031780:CDS 30.0%
TTTCTTGAAGTAACTTTCAC+TGG + chr7_1:66479061-66479080 None:intergenic 30.0%
!! AAGAAAAGATCTGCTTTTGT+TGG + chr7_1:66479117-66479136 None:intergenic 30.0%
CATAGTCTCTAATGAAATCT+TGG + chr7_1:66479197-66479216 None:intergenic 30.0%
TGATGAACAAACAACTTGAA+TGG + chr7_1:66479343-66479362 None:intergenic 30.0%
AAGTGGTTATATTGCTCATA+AGG - chr7_1:66479374-66479393 Msa1031780:CDS 30.0%
CTATTTGATGAAACAAGGTT+GGG + chr7_1:66479441-66479460 None:intergenic 30.0%
TAGTAAATGTACCTAGAAAG+AGG + chr7_1:66479476-66479495 None:intergenic 30.0%
!!! CATATTTTTAGACCCAAAAG+TGG + chr7_1:66479576-66479595 None:intergenic 30.0%
! TTTTTAATCACTAACGGAGT+TGG + chr7_1:66479638-66479657 None:intergenic 30.0%
CTCCGTTAGTGATTAAAAAT+AGG - chr7_1:66479639-66479658 Msa1031780:intron 30.0%
CGTTAGTGATTAAAAATAGG+AGG - chr7_1:66479642-66479661 Msa1031780:intron 30.0%
ACAGAAATCTTTGTTCACAA+TGG - chr7_1:66479837-66479856 Msa1031780:CDS 30.0%
! AAGTTCTGTTTTCATGTTAG+AGG - chr7_1:66479900-66479919 Msa1031780:CDS 30.0%
AAAAGGAAGGTCATAATAGT+TGG + chr7_1:66479991-66480010 None:intergenic 30.0%
TCAAAATATCTGCAAAAGGA+AGG + chr7_1:66480004-66480023 None:intergenic 30.0%
TGACTTTGATGCATTCTATA+TGG - chr7_1:66480175-66480194 Msa1031780:CDS 30.0%
!! GTTCTATACCTATTGTTTTG+GGG - chr7_1:66480225-66480244 Msa1031780:CDS 30.0%
!!! TTCTATACCTATTGTTTTGG+GGG - chr7_1:66480226-66480245 Msa1031780:CDS 30.0%
! AAAGGATCATCTTTTCTGTG+AGG + chr7_1:66478991-66479010 None:intergenic 35.0%
GGTAATAGCACATTTGCAAA+AGG + chr7_1:66479009-66479028 None:intergenic 35.0%
! CTTTTTCCATAGCAAGTCTA+CGG - chr7_1:66479142-66479161 Msa1031780:CDS 35.0%
TGATTCACAAGTATCCGTAT+TGG - chr7_1:66479226-66479245 Msa1031780:CDS 35.0%
TATGTGGCATGTCATTCAAT+TGG - chr7_1:66479276-66479295 Msa1031780:CDS 35.0%
! ATGGCATTGAATTTCACATC+AGG + chr7_1:66479324-66479343 None:intergenic 35.0%
! TCTTTTCTTGGCCAAATTTG+TGG + chr7_1:66479411-66479430 None:intergenic 35.0%
!! TTGGGTGGATTTTCTTTTCT+TGG + chr7_1:66479423-66479442 None:intergenic 35.0%
CCTATTTGATGAAACAAGGT+TGG + chr7_1:66479442-66479461 None:intergenic 35.0%
! CCAACCTTGTTTCATCAAAT+AGG - chr7_1:66479439-66479458 Msa1031780:intron 35.0%
GGTACCTATTTGATGAAACA+AGG + chr7_1:66479446-66479465 None:intergenic 35.0%
TACCATTTCTTCCTCTTTCT+AGG - chr7_1:66479462-66479481 Msa1031780:intron 35.0%
TACCTAGAAAGAGGAAGAAA+TGG + chr7_1:66479467-66479486 None:intergenic 35.0%
ATGTTGATGTCGAATCAATC+AGG + chr7_1:66479518-66479537 None:intergenic 35.0%
!! AAAAAGCTAGCTTTCTTTGC+CGG - chr7_1:66479762-66479781 Msa1031780:intron 35.0%
GGAAGACTAAAAACACCATA+CGG - chr7_1:66479858-66479877 Msa1031780:CDS 35.0%
TAATAGTTGGCAATGATCAC+TGG + chr7_1:66479978-66479997 None:intergenic 35.0%
! CTGAAAGGTATAGTTAGTTC+TGG - chr7_1:66480083-66480102 Msa1031780:CDS 35.0%
AGAAGAATGTGTTGAAGGTA+AGG - chr7_1:66480123-66480142 Msa1031780:CDS 35.0%
GAAGAATGTGTTGAAGGTAA+GGG - chr7_1:66480124-66480143 Msa1031780:CDS 35.0%
TAGAATGCATCAAAGTCAAG+TGG + chr7_1:66480173-66480192 None:intergenic 35.0%
TATGAATCCCCCAAAACAAT+AGG + chr7_1:66480236-66480255 None:intergenic 35.0%
! AAAGGATCATCTTTTCTGTG+AGG + chr7_1:66478991-66479010 None:intergenic 35.0%
GGTAATAGCACATTTGCAAA+AGG + chr7_1:66479009-66479028 None:intergenic 35.0%
! CTTTTTCCATAGCAAGTCTA+CGG - chr7_1:66479142-66479161 Msa1031780:CDS 35.0%
TGATTCACAAGTATCCGTAT+TGG - chr7_1:66479226-66479245 Msa1031780:CDS 35.0%
TATGTGGCATGTCATTCAAT+TGG - chr7_1:66479276-66479295 Msa1031780:CDS 35.0%
! ATGGCATTGAATTTCACATC+AGG + chr7_1:66479324-66479343 None:intergenic 35.0%
! TCTTTTCTTGGCCAAATTTG+TGG + chr7_1:66479411-66479430 None:intergenic 35.0%
!! TTGGGTGGATTTTCTTTTCT+TGG + chr7_1:66479423-66479442 None:intergenic 35.0%
CCTATTTGATGAAACAAGGT+TGG + chr7_1:66479442-66479461 None:intergenic 35.0%
! CCAACCTTGTTTCATCAAAT+AGG - chr7_1:66479439-66479458 Msa1031780:intron 35.0%
GGTACCTATTTGATGAAACA+AGG + chr7_1:66479446-66479465 None:intergenic 35.0%
TACCATTTCTTCCTCTTTCT+AGG - chr7_1:66479462-66479481 Msa1031780:intron 35.0%
TACCTAGAAAGAGGAAGAAA+TGG + chr7_1:66479467-66479486 None:intergenic 35.0%
ATGTTGATGTCGAATCAATC+AGG + chr7_1:66479518-66479537 None:intergenic 35.0%
!! AAAAAGCTAGCTTTCTTTGC+CGG - chr7_1:66479762-66479781 Msa1031780:intron 35.0%
GGAAGACTAAAAACACCATA+CGG - chr7_1:66479858-66479877 Msa1031780:CDS 35.0%
TAATAGTTGGCAATGATCAC+TGG + chr7_1:66479978-66479997 None:intergenic 35.0%
! CTGAAAGGTATAGTTAGTTC+TGG - chr7_1:66480083-66480102 Msa1031780:CDS 35.0%
AGAAGAATGTGTTGAAGGTA+AGG - chr7_1:66480123-66480142 Msa1031780:CDS 35.0%
GAAGAATGTGTTGAAGGTAA+GGG - chr7_1:66480124-66480143 Msa1031780:CDS 35.0%
TAGAATGCATCAAAGTCAAG+TGG + chr7_1:66480173-66480192 None:intergenic 35.0%
TATGAATCCCCCAAAACAAT+AGG + chr7_1:66480236-66480255 None:intergenic 35.0%
!! CGTAGACTTGCTATGGAAAA+AGG + chr7_1:66479144-66479163 None:intergenic 40.0%
TGGCATGTCATTCAATTGGA+AGG - chr7_1:66479280-66479299 Msa1031780:CDS 40.0%
TTCAATTGGAAGGTCTGCTA+TGG - chr7_1:66479290-66479309 Msa1031780:CDS 40.0%
ATGCATGCCTACCACAAATT+TGG - chr7_1:66479397-66479416 Msa1031780:CDS 40.0%
TTCTTGGCCAAATTTGTGGT+AGG + chr7_1:66479407-66479426 None:intergenic 40.0%
TTTGATGAAACAAGGTTGGG+TGG + chr7_1:66479438-66479457 None:intergenic 40.0%
! TCGAATCAATCAGGTGGATT+AGG + chr7_1:66479509-66479528 None:intergenic 40.0%
TTGATGTCGAATCAATCAGG+TGG + chr7_1:66479515-66479534 None:intergenic 40.0%
! AACTTGACCATCACCACTTT+TGG - chr7_1:66479560-66479579 Msa1031780:intron 40.0%
!! ACTTGACCATCACCACTTTT+GGG - chr7_1:66479561-66479580 Msa1031780:intron 40.0%
TTTAGACCCAAAAGTGGTGA+TGG + chr7_1:66479570-66479589 None:intergenic 40.0%
TCGACAAGATTTATCCGTAC+TGG + chr7_1:66479801-66479820 None:intergenic 40.0%
GGATAAATCTTGTCGAGACA+TGG - chr7_1:66479805-66479824 Msa1031780:CDS 40.0%
CCTAATAACTCATCACCGTA+TGG + chr7_1:66479876-66479895 None:intergenic 40.0%
CCATACGGTGATGAGTTATT+AGG - chr7_1:66479873-66479892 Msa1031780:CDS 40.0%
GCTACAGAAGAATGTGTTGA+AGG - chr7_1:66480118-66480137 Msa1031780:CDS 40.0%
!!! AGGTAAGGGAGCATTTTCAA+TGG - chr7_1:66480138-66480157 Msa1031780:CDS 40.0%
AATGCATCAAAGTCAAGTGG+AGG + chr7_1:66480170-66480189 None:intergenic 40.0%
!! CGTAGACTTGCTATGGAAAA+AGG + chr7_1:66479144-66479163 None:intergenic 40.0%
TGGCATGTCATTCAATTGGA+AGG - chr7_1:66479280-66479299 Msa1031780:CDS 40.0%
TTCAATTGGAAGGTCTGCTA+TGG - chr7_1:66479290-66479309 Msa1031780:CDS 40.0%
ATGCATGCCTACCACAAATT+TGG - chr7_1:66479397-66479416 Msa1031780:CDS 40.0%
TTCTTGGCCAAATTTGTGGT+AGG + chr7_1:66479407-66479426 None:intergenic 40.0%
TTTGATGAAACAAGGTTGGG+TGG + chr7_1:66479438-66479457 None:intergenic 40.0%
! TCGAATCAATCAGGTGGATT+AGG + chr7_1:66479509-66479528 None:intergenic 40.0%
TTGATGTCGAATCAATCAGG+TGG + chr7_1:66479515-66479534 None:intergenic 40.0%
! AACTTGACCATCACCACTTT+TGG - chr7_1:66479560-66479579 Msa1031780:intron 40.0%
!! ACTTGACCATCACCACTTTT+GGG - chr7_1:66479561-66479580 Msa1031780:intron 40.0%
TTTAGACCCAAAAGTGGTGA+TGG + chr7_1:66479570-66479589 None:intergenic 40.0%
TCGACAAGATTTATCCGTAC+TGG + chr7_1:66479801-66479820 None:intergenic 40.0%
GGATAAATCTTGTCGAGACA+TGG - chr7_1:66479805-66479824 Msa1031780:CDS 40.0%
CCTAATAACTCATCACCGTA+TGG + chr7_1:66479876-66479895 None:intergenic 40.0%
CCATACGGTGATGAGTTATT+AGG - chr7_1:66479873-66479892 Msa1031780:CDS 40.0%
GCTACAGAAGAATGTGTTGA+AGG - chr7_1:66480118-66480137 Msa1031780:CDS 40.0%
!!! AGGTAAGGGAGCATTTTCAA+TGG - chr7_1:66480138-66480157 Msa1031780:CDS 40.0%
AATGCATCAAAGTCAAGTGG+AGG + chr7_1:66480170-66480189 None:intergenic 40.0%
TTACCCGTGAAAACTGAACC+CGG - chr7_1:66479024-66479043 Msa1031780:CDS 45.0%
TTCACTGGCATAATTGCCAC+CGG + chr7_1:66479046-66479065 None:intergenic 45.0%
!! ATCATGCCGTAGACTTGCTA+TGG + chr7_1:66479151-66479170 None:intergenic 45.0%
TACTGGCGAATTCACTTCTC+CGG + chr7_1:66479784-66479803 None:intergenic 45.0%
GAGAAGTGAATTCGCCAGTA+CGG - chr7_1:66479784-66479803 Msa1031780:CDS 45.0%
GAAGTGAACACAGCACGTAT+TGG - chr7_1:66479927-66479946 Msa1031780:CDS 45.0%
TTACCCGTGAAAACTGAACC+CGG - chr7_1:66479024-66479043 Msa1031780:CDS 45.0%
TTCACTGGCATAATTGCCAC+CGG + chr7_1:66479046-66479065 None:intergenic 45.0%
!! ATCATGCCGTAGACTTGCTA+TGG + chr7_1:66479151-66479170 None:intergenic 45.0%
TACTGGCGAATTCACTTCTC+CGG + chr7_1:66479784-66479803 None:intergenic 45.0%
GAGAAGTGAATTCGCCAGTA+CGG - chr7_1:66479784-66479803 Msa1031780:CDS 45.0%
GAAGTGAACACAGCACGTAT+TGG - chr7_1:66479927-66479946 Msa1031780:CDS 45.0%
TCACTGGCATAATTGCCACC+GGG + chr7_1:66479045-66479064 None:intergenic 50.0%
!! CATGATCGTCGAGTTGGTGT+GGG - chr7_1:66479165-66479184 Msa1031780:CDS 50.0%
TATCCGTATTGGAACCGCAC+CGG - chr7_1:66479237-66479256 Msa1031780:CDS 50.0%
ATAAAAGTGATCCGCGCCAC+CGG + chr7_1:66479259-66479278 None:intergenic 50.0%
!! TGGCGCGGATCACTTTTATG+TGG - chr7_1:66479260-66479279 Msa1031780:CDS 50.0%
TCACTGGCATAATTGCCACC+GGG + chr7_1:66479045-66479064 None:intergenic 50.0%
!! CATGATCGTCGAGTTGGTGT+GGG - chr7_1:66479165-66479184 Msa1031780:CDS 50.0%
TATCCGTATTGGAACCGCAC+CGG - chr7_1:66479237-66479256 Msa1031780:CDS 50.0%
ATAAAAGTGATCCGCGCCAC+CGG + chr7_1:66479259-66479278 None:intergenic 50.0%
!! TGGCGCGGATCACTTTTATG+TGG - chr7_1:66479260-66479279 Msa1031780:CDS 50.0%
! CCACCGGGTTCAGTTTTCAC+GGG + chr7_1:66479030-66479049 None:intergenic 55.0%
! GCCACCGGGTTCAGTTTTCA+CGG + chr7_1:66479031-66479050 None:intergenic 55.0%
CTACGGCATGATCGTCGAGT+TGG - chr7_1:66479159-66479178 Msa1031780:CDS 55.0%
!! GCATGATCGTCGAGTTGGTG+TGG - chr7_1:66479164-66479183 Msa1031780:CDS 55.0%
! CCACCGGGTTCAGTTTTCAC+GGG + chr7_1:66479030-66479049 None:intergenic 55.0%
! GCCACCGGGTTCAGTTTTCA+CGG + chr7_1:66479031-66479050 None:intergenic 55.0%
CTACGGCATGATCGTCGAGT+TGG - chr7_1:66479159-66479178 Msa1031780:CDS 55.0%
!! GCATGATCGTCGAGTTGGTG+TGG - chr7_1:66479164-66479183 Msa1031780:CDS 55.0%
CCCGTGAAAACTGAACCCGG+TGG - chr7_1:66479027-66479046 Msa1031780:CDS 60.0%
!! GATCGTCGAGTTGGTGTGGG+AGG - chr7_1:66479168-66479187 Msa1031780:CDS 60.0%
CCACCGGTGCGGTTCCAATA+CGG + chr7_1:66479243-66479262 None:intergenic 60.0%
CCCGTGAAAACTGAACCCGG+TGG - chr7_1:66479027-66479046 Msa1031780:CDS 60.0%
!! GATCGTCGAGTTGGTGTGGG+AGG - chr7_1:66479168-66479187 Msa1031780:CDS 60.0%
CCACCGGTGCGGTTCCAATA+CGG + chr7_1:66479243-66479262 None:intergenic 60.0%
CCGTATTGGAACCGCACCGG+TGG - chr7_1:66479240-66479259 Msa1031780:CDS 65.0%
CCGTATTGGAACCGCACCGG+TGG - chr7_1:66479240-66479259 Msa1031780:CDS 65.0%
! TTGGAACCGCACCGGTGGCG+CGG - chr7_1:66479245-66479264 Msa1031780:CDS 70.0%
AGTGATCCGCGCCACCGGTG+CGG + chr7_1:66479254-66479273 None:intergenic 70.0%
! TTGGAACCGCACCGGTGGCG+CGG - chr7_1:66479245-66479264 Msa1031780:CDS 70.0%
AGTGATCCGCGCCACCGGTG+CGG + chr7_1:66479254-66479273 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 66478958 66480256 66478958 ID=Msa1031780;Name=Msa1031780
chr7_1 mRNA 66478958 66480256 66478958 ID=Msa1031780-mRNA-1;Parent=Msa1031780;Name=Msa1031780-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0|0|3|0|318
chr7_1 exon 66480025 66480256 66480025 ID=Msa1031780-mRNA-1:exon:14990;Parent=Msa1031780-mRNA-1
chr7_1 exon 66479768 66480003 66479768 ID=Msa1031780-mRNA-1:exon:14989;Parent=Msa1031780-mRNA-1
chr7_1 exon 66478958 66479446 66478958 ID=Msa1031780-mRNA-1:exon:14988;Parent=Msa1031780-mRNA-1
chr7_1 CDS 66480025 66480256 66480025 ID=Msa1031780-mRNA-1:cds;Parent=Msa1031780-mRNA-1
chr7_1 CDS 66479768 66480003 66479768 ID=Msa1031780-mRNA-1:cds;Parent=Msa1031780-mRNA-1
chr7_1 CDS 66478958 66479446 66478958 ID=Msa1031780-mRNA-1:cds;Parent=Msa1031780-mRNA-1
Gene Sequence

>Msa1031780

ATGAATAGAAGCTTTAAGATATATGTTTATCCTCACAGAAAAGATGATCCTTTTGCAAATGTGCTATTACCCGTGAAAACTGAACCCGGTGGCAATTATGCCAGTGAAAGTTACTTCAAGAAAGCGCTTATGAAGAGCCATTTCATTACAAAAGATCCAACAAAAGCAGATCTTTTCTTCATGCCTTTTTCCATAGCAAGTCTACGGCATGATCGTCGAGTTGGTGTGGGAGACTATGTTCAGAATATGATTCACAAGTATCCGTATTGGAACCGCACCGGTGGCGCGGATCACTTTTATGTGGCATGTCATTCAATTGGAAGGTCTGCTATGGATAAAGCACCTGATGTGAAATTCAATGCCATTCAAGTTGTTTGTTCATCAAGTTATTTCTTAAGTGGTTATATTGCTCATAAGGATGCATGCCTACCACAAATTTGGCCAAGAAAAGAAAATCCACCCAACCTTCTAGCTTTCTTTGCCGGAGAAGTGAATTCGCCAGTACGGATAAATCTTGTCGAGACATGGAAAAATGATACAGAAATCTTTGTTCACAATGGAAGACTAAAAACACCATACGGTGATGAGTTATTAGGAAGCAAGTTCTGTTTTCATGTTAGAGGCTATGAAGTGAACACAGCACGTATTGGTGATTCATTATACTATGGTTGTGTTCCAGTGATCATTGCCAACTATTATGACCTTCCTTTTGCAGATATTTTGAATTGGAAAAGTTTTTCTGTTGTTGTCACTACTTTAGATATACCTTTATTGAAAAAGATTCTGAAAGGTATAGTTAGTTCTGGTGAGTATTTGATGCTACAGAAGAATGTGTTGAAGGTAAGGGAGCATTTTCAATGGCATTCACCTCCACTTGACTTTGATGCATTCTATATGGTTATGTATGAATTATGGCTTAGACGAAGTTCTATACCTATTGTTTTGGGGGATTCATAG

Protein sequence

>Msa1031780

MNRSFKIYVYPHRKDDPFANVLLPVKTEPGGNYASESYFKKALMKSHFITKDPTKADLFFMPFSIASLRHDRRVGVGDYVQNMIHKYPYWNRTGGADHFYVACHSIGRSAMDKAPDVKFNAIQVVCSSSYFLSGYIAHKDACLPQIWPRKENPPNLLAFFAGEVNSPVRINLVETWKNDTEIFVHNGRLKTPYGDELLGSKFCFHVRGYEVNTARIGDSLYYGCVPVIIANYYDLPFADILNWKSFSVVVTTLDIPLLKKILKGIVSSGEYLMLQKNVLKVREHFQWHSPPLDFDAFYMVMYELWLRRSSIPIVLGDS*