AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1185980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1185980 MtrunA17_Chr8g0352241 94.048 252 10 2 1 251 1 248 4.38e-166 459
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1185980 AT4G15030.1 61.268 284 68 4 1 251 1 275 1.56e-115 332
Msa1185980 AT4G15030.2 60.069 288 69 5 1 251 1 279 2.79e-112 324
Msa1185980 AT4G15030.3 60.069 288 69 5 1 251 1 279 2.79e-112 324

Find 69 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTCTCTCTTCACTTTCT+TGG 0.103766 8_1:-23884305 None:intergenic
AAGGAGCTACGATCAGATTT+TGG 0.151297 8_1:-23878682 None:intergenic
TTATCATATGTTTGTAATTT+AGG 0.183093 8_1:-23885168 None:intergenic
GTGCCTACAGTTAGTTTCTA+TGG 0.197234 8_1:+23880169 Msa1185980:intron
AACAAAGGTTTGAGATTTAT+TGG 0.205401 8_1:-23878658 None:intergenic
GCTAGTTGAAAATTTGTAAA+AGG 0.233730 8_1:+23878512 Msa1185980:five_prime_UTR
CGAAGAGAGGATTGCGAAAC+TGG 0.237898 8_1:+23878605 Msa1185980:five_prime_UTR
TATCAGGCTTTAATAAAATA+TGG 0.246167 8_1:+23885423 Msa1185980:three_prime_UTR
AGTAAATTTATCCATTTATC+AGG 0.248320 8_1:+23885407 Msa1185980:three_prime_UTR
CAAACAAGCTCTAGTTAAAT+TGG 0.261931 8_1:+23883038 Msa1185980:CDS
AATTTCATAACTGCATTAAT+AGG 0.277094 8_1:-23885332 None:intergenic
GAAGAATCTGCTACATGTTC+TGG 0.308849 8_1:+23885364 Msa1185980:three_prime_UTR
TGAAAATTTGTAAAAGGATA+AGG 0.316540 8_1:+23878518 Msa1185980:five_prime_UTR
TTGTAATTGCAGACAGTATC+AGG 0.337345 8_1:+23878842 Msa1185980:intron
GAGCTGGTAAACATGGAAAA+AGG 0.365567 8_1:+23885105 Msa1185980:three_prime_UTR
GAAAATTTGTAAAAGGATAA+GGG 0.391098 8_1:+23878519 Msa1185980:five_prime_UTR
ACAAAGGTTTGAGATTTATT+GGG 0.407887 8_1:-23878657 None:intergenic
ACACGCTAAGAGAGGGATAT+AGG 0.410948 8_1:+23880242 Msa1185980:CDS
CTAAAATTGCTTAATATACT+AGG 0.412296 8_1:+23885252 Msa1185980:three_prime_UTR
ATAGGCAACTTTAAGGTTGA+AGG 0.433714 8_1:-23880205 None:intergenic
AGTGAAGAGAGAAGGAGAAA+AGG 0.434606 8_1:+23884312 Msa1185980:CDS
ACCAGCCTTTGCTCCCATGA+TGG 0.442891 8_1:-23880912 None:intergenic
TCATTCACCATGACATCGTT+GGG 0.455151 8_1:+23878707 Msa1185980:exon
TTCGAAGAGTGATGATGATC+TGG 0.455182 8_1:+23884275 Msa1185980:CDS
ACGGTCAGAGGAAGATGATA+TGG 0.473518 8_1:+23880887 Msa1185980:CDS
TGCCTACAGTTAGTTTCTAT+GGG 0.476952 8_1:+23880170 Msa1185980:intron
TTCATTCACCATGACATCGT+TGG 0.490206 8_1:+23878706 Msa1185980:exon
AAGCATTGCAATGAGAAAGA+TGG 0.492067 8_1:+23882429 Msa1185980:CDS
AACATAGACGAGTTTCTTGA+GGG 0.498571 8_1:+23885021 Msa1185980:CDS
AATGTGTTGCAAGATTTATA+CGG 0.500196 8_1:+23880868 Msa1185980:intron
TCCATCATGGGAGCAAAGGC+TGG 0.509246 8_1:+23880911 Msa1185980:CDS
AAGATGATATGGATCCATCA+TGG 0.516160 8_1:+23880898 Msa1185980:CDS
ACAGAGAAGGAAGTCATGTC+TGG 0.518399 8_1:+23881802 Msa1185980:CDS
CAAAGGTTTGAGATTTATTG+GGG 0.529267 8_1:-23878656 None:intergenic
CAGTATCAGGCTCATATTCG+AGG 0.531781 8_1:+23878855 Msa1185980:CDS
ATGTAGCAGATTCTTCTACT+TGG 0.539283 8_1:-23885357 None:intergenic
GATGTCATGGTGAATGAAGA+AGG 0.541902 8_1:-23878701 None:intergenic
AGAAAGAAGACAACAAAAGC+TGG 0.545344 8_1:+23884143 Msa1185980:CDS
TGGATCCATCATGGGAGCAA+AGG 0.551016 8_1:+23880907 Msa1185980:CDS
GCGTTTCTTGAGACAAGAGC+TGG 0.553753 8_1:+23885089 Msa1185980:three_prime_UTR
TTTAGGGTCAACAAGTTCGA+AGG 0.556021 8_1:-23885234 None:intergenic
GAGACAAGAGCTGGTAAACA+TGG 0.557097 8_1:+23885098 Msa1185980:three_prime_UTR
TAGGCAGTGCTGGGAGCAAG+TGG 0.564184 8_1:+23885129 Msa1185980:three_prime_UTR
GCCAAGAAAGTGAAGAGAGA+AGG 0.566074 8_1:+23884304 Msa1185980:CDS
TAACATAGACGAGTTTCTTG+AGG 0.575423 8_1:+23885020 Msa1185980:CDS
CAGAGATCCCAACGATGTCA+TGG 0.577645 8_1:-23878714 None:intergenic
TGCAAGATTTATACGGTCAG+AGG 0.578191 8_1:+23880875 Msa1185980:intron
CTACAAGAGGCAGAAAGAGA+AGG 0.586951 8_1:+23884113 Msa1185980:CDS
CAGGGAAACTTAACTACAAG+AGG 0.589540 8_1:+23884100 Msa1185980:CDS
GAGTGATGATGATCTGGACG+AGG 0.591426 8_1:+23884281 Msa1185980:CDS
AGATGATATGGATCCATCAT+GGG 0.599854 8_1:+23880899 Msa1185980:CDS
AAGGTTTGAGATTTATTGGG+GGG 0.601439 8_1:-23878654 None:intergenic
CTCTTCTCTGTCGAATATCG+CGG 0.603692 8_1:-23878741 None:intergenic
TCAACTAGCACTTAAACGAG+TGG 0.605889 8_1:-23878498 None:intergenic
TGCTTAATATACTAGGCAGA+AGG 0.608974 8_1:+23885259 Msa1185980:three_prime_UTR
TGGGAGCAAGTGGATAATGC+AGG 0.609766 8_1:+23885139 Msa1185980:three_prime_UTR
TCTCAGATGGAGAACAGAGA+AGG 0.612843 8_1:+23881789 Msa1185980:CDS
AAGGAAGTCATGTCTGGCAA+AGG 0.614471 8_1:+23881808 Msa1185980:CDS
AGATAAAGACACGCTAAGAG+AGG 0.617719 8_1:+23880234 Msa1185980:CDS
AAAAGCTGGACAGAAGAAAG+AGG 0.623216 8_1:+23884157 Msa1185980:CDS
GATAAAGACACGCTAAGAGA+GGG 0.626505 8_1:+23880235 Msa1185980:CDS
GTCACAGTACAAGAGTGGTA+AGG 0.635278 8_1:+23881581 Msa1185980:CDS
ATTACAGGTCAGTTTATATG+CGG 0.641502 8_1:+23882402 Msa1185980:intron
TTAAATTGGTAGCATGTGAG+AGG 0.651772 8_1:+23883052 Msa1185980:CDS
GACATGTCACAGTACAAGAG+TGG 0.670486 8_1:+23881576 Msa1185980:CDS
AGTGATGATGATCTGGACGA+GGG 0.693469 8_1:+23884282 Msa1185980:CDS
AAAGGTTTGAGATTTATTGG+GGG 0.697684 8_1:-23878655 None:intergenic
ACATAGACGAGTTTCTTGAG+GGG 0.714392 8_1:+23885022 Msa1185980:CDS
AGATGGATTAGCAAGCTACG+AGG 0.761444 8_1:+23882446 Msa1185980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAAAAGATATTCATA+TGG - chr8_1:23880764-23880783 None:intergenic 10.0%
!!! TATGAATATCTTTTATTATT+TGG + chr8_1:23880764-23880783 Msa1185980:intron 10.0%
!! TTTACTAAATATTTATATTG+AGG + chr8_1:23880987-23881006 Msa1185980:intron 10.0%
!! ACTAAAAAAAATATATTATG+GGG - chr8_1:23881696-23881715 None:intergenic 10.0%
!! GACTAAAAAAAATATATTAT+GGG - chr8_1:23881697-23881716 None:intergenic 10.0%
!! AGACTAAAAAAAATATATTA+TGG - chr8_1:23881698-23881717 None:intergenic 10.0%
!!! AAAACAAAACCTAATTTTTT+TGG + chr8_1:23878576-23878595 Msa1185980:five_prime_UTR 15.0%
!! AAACAGGAAAAAATAAAAAA+TGG - chr8_1:23879520-23879539 None:intergenic 15.0%
!!! ATTTTTTATTTTTTCCTGTT+TGG + chr8_1:23879519-23879538 Msa1185980:intron 15.0%
!!! TTTTTTATTTTTTCCTGTTT+GGG + chr8_1:23879520-23879539 Msa1185980:intron 15.0%
!!! TAATAGATACAATTTGTTAA+TGG + chr8_1:23879754-23879773 Msa1185980:intron 15.0%
!!! AATAGATACAATTTGTTAAT+GGG + chr8_1:23879755-23879774 Msa1185980:intron 15.0%
!!! ACAACTTTTATATATTTTTC+AGG + chr8_1:23881171-23881190 Msa1185980:intron 15.0%
!!! TTTTATATATTTTTCAGGAT+TGG + chr8_1:23881176-23881195 Msa1185980:intron 15.0%
!!! TTTATATATTTTTCAGGATT+GGG + chr8_1:23881177-23881196 Msa1185980:intron 15.0%
!! CAAAATTTATACATTGTTTA+TGG + chr8_1:23881228-23881247 Msa1185980:intron 15.0%
!! TATCACATAAGTATAAAATA+GGG - chr8_1:23881305-23881324 None:intergenic 15.0%
!! ATATCACATAAGTATAAAAT+AGG - chr8_1:23881306-23881325 None:intergenic 15.0%
!!! ATTTTATACTTATGTGATAT+TGG + chr8_1:23881306-23881325 Msa1185980:intron 15.0%
!! TTATGAAGATGATTAAAAAT+TGG - chr8_1:23882180-23882199 None:intergenic 15.0%
!! ATTAAAAGTTAAAACATTTC+TGG + chr8_1:23883499-23883518 Msa1185980:intron 15.0%
!!! TATTTTCTATTTTTGAATGA+AGG - chr8_1:23883573-23883592 None:intergenic 15.0%
!! AGATTTAATTAAACTAATAC+AGG - chr8_1:23883643-23883662 None:intergenic 15.0%
!! AAATTACAAAAACAGATTTA+TGG - chr8_1:23883779-23883798 None:intergenic 15.0%
!!! TGTTCATTTAAAGATTATTT+TGG + chr8_1:23883915-23883934 Msa1185980:intron 15.0%
!! TGAAAATACATGTTAATTAA+AGG - chr8_1:23884935-23884954 None:intergenic 15.0%
!!! TTTAATTAACATGTATTTTC+AGG + chr8_1:23884934-23884953 Msa1185980:intron 15.0%
!! TTATCATATGTTTGTAATTT+AGG - chr8_1:23885171-23885190 None:intergenic 15.0%
!!! TAGTATATTAAGCAATTTTA+GGG - chr8_1:23885253-23885272 None:intergenic 15.0%
!! TGAAAATTTGTAAAAGGATA+AGG + chr8_1:23878518-23878537 Msa1185980:five_prime_UTR 20.0%
!! GAAAATTTGTAAAAGGATAA+GGG + chr8_1:23878519-23878538 Msa1185980:five_prime_UTR 20.0%
!! AAAAAGTTTATCAACGATTA+CGG + chr8_1:23878900-23878919 Msa1185980:CDS 20.0%
!!! CAATTTTCTTCTAAATAAGT+TGG + chr8_1:23879255-23879274 Msa1185980:intron 20.0%
!! ACAATAGGATTAATCAAATT+TGG + chr8_1:23879548-23879567 Msa1185980:intron 20.0%
!! CAAATTTCTTGTAATAAAAG+AGG - chr8_1:23880348-23880367 None:intergenic 20.0%
!!! ATTTTTCTATTTCTAAGCAA+AGG - chr8_1:23880587-23880606 None:intergenic 20.0%
!! TTTGCTTAGAAATAGAAAAA+TGG + chr8_1:23880586-23880605 Msa1185980:intron 20.0%
!! TTGCTTAGAAATAGAAAAAT+GGG + chr8_1:23880587-23880606 Msa1185980:intron 20.0%
!!! TTATTATGCTAAGCTTTTTA+AGG + chr8_1:23880941-23880960 Msa1185980:CDS 20.0%
!! GTAAAAAAATAATTGTGCAA+AGG - chr8_1:23880972-23880991 None:intergenic 20.0%
!!! CACTATTTTTGTTAAAAACA+TGG - chr8_1:23881119-23881138 None:intergenic 20.0%
!!! TGTTTTTATAGTCTATTACT+AGG + chr8_1:23881137-23881156 Msa1185980:intron 20.0%
!!! ATAAAATAGGGTGATATTTT+TGG - chr8_1:23881293-23881312 None:intergenic 20.0%
!!! ATTTATCTAAAATGGCTTAT+AGG + chr8_1:23881449-23881468 Msa1185980:intron 20.0%
!! TATGCAGATTATATCTTTAA+AGG + chr8_1:23881730-23881749 Msa1185980:intron 20.0%
!!! AATTGCATATTTTTGTAGAT+TGG + chr8_1:23881766-23881785 Msa1185980:intron 20.0%
!!! AAATAGTTCTAGTTAAACAT+GGG - chr8_1:23881890-23881909 None:intergenic 20.0%
!!! TTCAAAAAACAAATGCTTTT+TGG + chr8_1:23881908-23881927 Msa1185980:intron 20.0%
!!! CATCCTTTTTTTTTTTTTGT+GGG - chr8_1:23882016-23882035 None:intergenic 20.0%
!! AAATAGAAGATGTAAACTAT+GGG - chr8_1:23882088-23882107 None:intergenic 20.0%
!! AGATATAGCGTAAATTATAT+TGG + chr8_1:23882632-23882651 Msa1185980:intron 20.0%
!!! AATGCATTATGCTATTTATT+AGG + chr8_1:23882713-23882732 Msa1185980:intron 20.0%
!! TATTAATTGAGTTTGTGATA+TGG + chr8_1:23882814-23882833 Msa1185980:intron 20.0%
!! ATTTGAACACATCTAATTTA+AGG + chr8_1:23883365-23883384 Msa1185980:intron 20.0%
!! TTTGAACACATCTAATTTAA+GGG + chr8_1:23883366-23883385 Msa1185980:intron 20.0%
!! TAATAATAAGACATTTCCAA+AGG - chr8_1:23883483-23883502 None:intergenic 20.0%
!! AACAACTTGTAATATTATTG+AGG - chr8_1:23883691-23883710 None:intergenic 20.0%
!! CAAATTACAAAAATAGTACA+TGG - chr8_1:23883753-23883772 None:intergenic 20.0%
!! AAAATCACAAAAATAGTATG+TGG - chr8_1:23883802-23883821 None:intergenic 20.0%
!!! GTAATCTCAATTTTGTAAAA+AGG - chr8_1:23883946-23883965 None:intergenic 20.0%
!! AACCAATAAATAAATGAAAC+CGG - chr8_1:23884064-23884083 None:intergenic 20.0%
!! AATCAAAATGCTAAAATAAC+CGG - chr8_1:23884423-23884442 None:intergenic 20.0%
!! TAATAGTTAACTTAAGTGTT+TGG + chr8_1:23884854-23884873 Msa1185980:intron 20.0%
!!! AACAGATTAGTTAAAAATCA+GGG - chr8_1:23885054-23885073 None:intergenic 20.0%
!!! CTAGTATATTAAGCAATTTT+AGG - chr8_1:23885254-23885273 None:intergenic 20.0%
!! CTAAAATTGCTTAATATACT+AGG + chr8_1:23885252-23885271 Msa1185980:three_prime_UTR 20.0%
!! AATTTCATAACTGCATTAAT+AGG - chr8_1:23885335-23885354 None:intergenic 20.0%
!! AGTAAATTTATCCATTTATC+AGG + chr8_1:23885407-23885426 Msa1185980:three_prime_UTR 20.0%
!!! TTTTATTAAAGCCTGATAAA+TGG - chr8_1:23885421-23885440 None:intergenic 20.0%
!!! TATCAGGCTTTAATAAAATA+TGG + chr8_1:23885423-23885442 Msa1185980:three_prime_UTR 20.0%
!! ACAAAAAATGTCTGATTATT+TGG + chr8_1:23885456-23885475 Msa1185980:three_prime_UTR 20.0%
! GCTAGTTGAAAATTTGTAAA+AGG + chr8_1:23878512-23878531 Msa1185980:five_prime_UTR 25.0%
!!! AAATTAGGTTTTGTTTTTGC+TGG - chr8_1:23878573-23878592 None:intergenic 25.0%
! TCGATTCTACCAAAAAAATT+AGG - chr8_1:23878588-23878607 None:intergenic 25.0%
!! ACAAAGGTTTGAGATTTATT+GGG - chr8_1:23878660-23878679 None:intergenic 25.0%
!! AACAAAGGTTTGAGATTTAT+TGG - chr8_1:23878661-23878680 None:intergenic 25.0%
!!! AATCGTTGATAAACTTTTTG+TGG - chr8_1:23878899-23878918 None:intergenic 25.0%
! ATTACAGTAACCAATGAAAT+CGG - chr8_1:23879015-23879034 None:intergenic 25.0%
! GAAAACAACTTACAACTTAT+AGG - chr8_1:23879104-23879123 None:intergenic 25.0%
!!! GTTGTTTTCATAAGCTATTT+TGG + chr8_1:23879115-23879134 Msa1185980:intron 25.0%
! TTCAAATAAGTCAATCCTAA+TGG + chr8_1:23879215-23879234 Msa1185980:intron 25.0%
! ATAAATGATAAGTGTCCATT+AGG - chr8_1:23879233-23879252 None:intergenic 25.0%
!!! TTTCTTCTAAATAAGTTGGT+TGG + chr8_1:23879259-23879278 Msa1185980:intron 25.0%
!!! TGATATTCGAACTGTTTTTT+TGG + chr8_1:23879491-23879510 Msa1185980:intron 25.0%
!! CAAATTTGGAGATATTGATT+TGG + chr8_1:23879562-23879581 Msa1185980:intron 25.0%
! AAAAACAAAAATGACATGCA+CGG - chr8_1:23879694-23879713 None:intergenic 25.0%
! AAATCTTTCTGTTCTTGAAT+TGG - chr8_1:23879729-23879748 None:intergenic 25.0%
!!! ATAAAAGTCCTTTTTCAATG+TGG - chr8_1:23879925-23879944 None:intergenic 25.0%
! TTAATCTCAGAAGAATTCAT+CGG - chr8_1:23880143-23880162 None:intergenic 25.0%
!!! TGTTTTAATAGGCAACTTTA+AGG - chr8_1:23880215-23880234 None:intergenic 25.0%
!!! GTGTCTTTATCTGTTTTAAT+AGG - chr8_1:23880226-23880245 None:intergenic 25.0%
! GGAAAAATAAGACAATATTG+AGG - chr8_1:23880327-23880346 None:intergenic 25.0%
! TACTGGTATTAAAAAGAAGA+TGG - chr8_1:23880431-23880450 None:intergenic 25.0%
!!! GATCTTTGGTGTATTTTATT+TGG + chr8_1:23880544-23880563 Msa1185980:intron 25.0%
! AAAAATAAAACAGAACCCTA+AGG + chr8_1:23880675-23880694 Msa1185980:intron 25.0%
! TATAAATCTTGCAACACATT+TGG - chr8_1:23880868-23880887 None:intergenic 25.0%
! AATGTGTTGCAAGATTTATA+CGG + chr8_1:23880868-23880887 Msa1185980:intron 25.0%
!!! ATTTGCCCAATTTTGTTTAT+TGG + chr8_1:23881265-23881284 Msa1185980:intron 25.0%
!!! TTTGCCCAATTTTGTTTATT+GGG + chr8_1:23881266-23881285 Msa1185980:intron 25.0%
!!! TTGGGTTTTGATTATAGATT+TGG + chr8_1:23881331-23881350 Msa1185980:intron 25.0%
!! ATAGATTTGGTTGAATTAGT+TGG + chr8_1:23881344-23881363 Msa1185980:intron 25.0%
! CAGTATCTTAAAAGGATTTA+AGG - chr8_1:23881549-23881568 None:intergenic 25.0%
!!! GCATTTAGAATATTTTTTCG+TGG + chr8_1:23881617-23881636 Msa1185980:intron 25.0%
! CAAGGTTCAAAATTACTAAA+AGG - chr8_1:23881659-23881678 None:intergenic 25.0%
!!! GAAATAGTTCTAGTTAAACA+TGG - chr8_1:23881891-23881910 None:intergenic 25.0%
! TCTCCCACAAAAAAAAAAAA+AGG + chr8_1:23882010-23882029 Msa1185980:intron 25.0%
!!! CCATCCTTTTTTTTTTTTTG+TGG - chr8_1:23882017-23882036 None:intergenic 25.0%
! CCACAAAAAAAAAAAAAGGA+TGG + chr8_1:23882014-23882033 Msa1185980:intron 25.0%
! GAAATAGAAGATGTAAACTA+TGG - chr8_1:23882089-23882108 None:intergenic 25.0%
! TATAACAAATTAAAGACAGC+TGG - chr8_1:23882337-23882356 None:intergenic 25.0%
! CGTTAACTTCAAAATTGAAT+AGG - chr8_1:23882371-23882390 None:intergenic 25.0%
! AACGTTTCACATAATATTAC+AGG + chr8_1:23882387-23882406 Msa1185980:intron 25.0%
!! GTTTTTCCTAATGTTTTCTA+CGG - chr8_1:23882570-23882589 None:intergenic 25.0%
! GATCATCAGAAATTATAGTA+AGG - chr8_1:23882605-23882624 None:intergenic 25.0%
! AAGCAAATAGAATAAAAGAG+TGG - chr8_1:23882976-23882995 None:intergenic 25.0%
!!! AACTTTTGTTATTTTGAAGC+AGG + chr8_1:23883009-23883028 Msa1185980:CDS 25.0%
!!! ATCAGTTGATGAAGAAATTA+AGG + chr8_1:23883163-23883182 Msa1185980:intron 25.0%
! AAACATTTAACAAATATGGC+AGG - chr8_1:23883303-23883322 None:intergenic 25.0%
! GAGCAAACATTTAACAAATA+TGG - chr8_1:23883307-23883326 None:intergenic 25.0%
! TTATATACAATAACCAGAAG+AGG - chr8_1:23883329-23883348 None:intergenic 25.0%
! TTGATTATATCATTATCACC+TGG + chr8_1:23883436-23883455 Msa1185980:intron 25.0%
!! AATATGATAATGTATGTTCG+TGG + chr8_1:23883589-23883608 Msa1185980:intron 25.0%
! ACAAAAATAGTACATGGAAA+TGG - chr8_1:23883747-23883766 None:intergenic 25.0%
! TAAATGAACACATAAATAGC+AGG - chr8_1:23883905-23883924 None:intergenic 25.0%
! AAAAACCTTAATGACTTGAA+AGG - chr8_1:23883993-23884012 None:intergenic 25.0%
! TTAAATAATTGAAGGTTGTC+AGG + chr8_1:23884027-23884046 Msa1185980:intron 25.0%
! TTCCGGTTTCATTTATTTAT+TGG + chr8_1:23884059-23884078 Msa1185980:intron 25.0%
!! TTATTTTCAATAGATGTGCA+GGG + chr8_1:23884082-23884101 Msa1185980:intron 25.0%
! AATAAGAGGAAAATAAGAAG+GGG - chr8_1:23884212-23884231 None:intergenic 25.0%
! CAATAAGAGGAAAATAAGAA+GGG - chr8_1:23884213-23884232 None:intergenic 25.0%
! TCAATAAGAGGAAAATAAGA+AGG - chr8_1:23884214-23884233 None:intergenic 25.0%
!! ACGTATTTTCATTCAATAAG+AGG - chr8_1:23884226-23884245 None:intergenic 25.0%
! TGATGTAAAATAGCCATAAA+AGG - chr8_1:23884347-23884366 None:intergenic 25.0%
!!! TTTTATGGCTATTTTACATC+AGG + chr8_1:23884346-23884365 Msa1185980:intron 25.0%
!! GATATGAAACTCTGTATTTT+CGG + chr8_1:23884368-23884387 Msa1185980:intron 25.0%
!! CTAGTTCTTACTAAAAGAAA+CGG - chr8_1:23884537-23884556 None:intergenic 25.0%
!! TGTATTTGCATCTTTTGTAA+TGG + chr8_1:23884660-23884679 Msa1185980:intron 25.0%
! ACAATGTTTCACATCATAAT+AGG - chr8_1:23884722-23884741 None:intergenic 25.0%
! AAAACATTTCCTAGTAGTAT+TGG - chr8_1:23884748-23884767 None:intergenic 25.0%
!! AATGTTTTATATGCCAACAA+TGG + chr8_1:23884760-23884779 Msa1185980:intron 25.0%
!! ATGTTTTATATGCCAACAAT+GGG + chr8_1:23884761-23884780 Msa1185980:intron 25.0%
!! ATCATCAATTTTATGATCAC+TGG - chr8_1:23884980-23884999 None:intergenic 25.0%
!! CAACAGATTAGTTAAAAATC+AGG - chr8_1:23885055-23885074 None:intergenic 25.0%
!!! TTTGTTTTTGCTGGTTATAC+AGG - chr8_1:23878564-23878583 None:intergenic 30.0%
! AAAGGTTTGAGATTTATTGG+GGG - chr8_1:23878658-23878677 None:intergenic 30.0%
! CAAAGGTTTGAGATTTATTG+GGG - chr8_1:23878659-23878678 None:intergenic 30.0%
GATTTATCGAAGAATGAATG+AGG - chr8_1:23878801-23878820 None:intergenic 30.0%
ATGAGAAACAGAAACAAGTT+AGG - chr8_1:23878823-23878842 None:intergenic 30.0%
!! TGTTTTTGAACCGATTTCAT+TGG + chr8_1:23879002-23879021 Msa1185980:intron 30.0%
ACTTATTTGAACTTCTCAAC+TGG - chr8_1:23879206-23879225 None:intergenic 30.0%
AACTTATAAGCTCTCTCAAA+CGG + chr8_1:23879397-23879416 Msa1185980:intron 30.0%
!!! TATTTTTTCCTGTTTGGGAA+TGG + chr8_1:23879525-23879544 Msa1185980:intron 30.0%
!! TTTGGAGATATTGATTTGGT+TGG + chr8_1:23879566-23879585 Msa1185980:intron 30.0%
TCTTAATGTCCTACAGTAAA+TGG + chr8_1:23879589-23879608 Msa1185980:intron 30.0%
!! ATGCTTATATTGGTTTCCTA+CGG + chr8_1:23879790-23879809 Msa1185980:intron 30.0%
!! TTTTGATTCAAATGACCTTC+AGG + chr8_1:23879889-23879908 Msa1185980:intron 30.0%
ATCTTGCCATATGTATGATA+AGG + chr8_1:23880275-23880294 Msa1185980:intron 30.0%
!! TTTTAATACCAGTAGCTTGT+TGG + chr8_1:23880437-23880456 Msa1185980:intron 30.0%
!! TTTAATACCAGTAGCTTGTT+GGG + chr8_1:23880438-23880457 Msa1185980:intron 30.0%
AAATTGTACTATGACACCAA+AGG - chr8_1:23880468-23880487 None:intergenic 30.0%
! CTGATTTTTCTCTTATAGCA+AGG - chr8_1:23880524-23880543 None:intergenic 30.0%
! CTTGCTATAAGAGAAAAATC+AGG + chr8_1:23880522-23880541 Msa1185980:intron 30.0%
AAGAGAAAAATCAGGATCTT+TGG + chr8_1:23880530-23880549 Msa1185980:intron 30.0%
ATTTCAATAGTCATGCCTTA+GGG - chr8_1:23880693-23880712 None:intergenic 30.0%
TCAACATTTGCTCAATTTCT+AGG - chr8_1:23881062-23881081 None:intergenic 30.0%
TGGTCCCAATAAACAAAATT+GGG - chr8_1:23881273-23881292 None:intergenic 30.0%
TTGGTCCCAATAAACAAAAT+TGG - chr8_1:23881274-23881293 None:intergenic 30.0%
TACTTATGTGATATTGGCAT+TGG + chr8_1:23881312-23881331 Msa1185980:intron 30.0%
ACTTATGTGATATTGGCATT+GGG + chr8_1:23881313-23881332 Msa1185980:intron 30.0%
! AATCCATTAGCTCTTACATA+CGG - chr8_1:23881376-23881395 None:intergenic 30.0%
! AAGCTCTGTTTACTAGATTT+TGG + chr8_1:23881412-23881431 Msa1185980:intron 30.0%
! TCTAAAATGGCTTATAGGAA+AGG + chr8_1:23881454-23881473 Msa1185980:intron 30.0%
GATGGTAATTGTGAGTTTAA+TGG - chr8_1:23881984-23882003 None:intergenic 30.0%
TGTAAACTATGGGATTCATA+CGG - chr8_1:23882078-23882097 None:intergenic 30.0%
! ATTTAAAACTCAACTCTTGC+AGG + chr8_1:23882216-23882235 Msa1185980:intron 30.0%
GACAGGTAAGTGAAAAATAT+AGG - chr8_1:23882285-23882304 None:intergenic 30.0%
ATTACAGGTCAGTTTATATG+CGG + chr8_1:23882402-23882421 Msa1185980:intron 30.0%
TTGAAGTTAACCCAATCAAA+AGG + chr8_1:23882533-23882552 Msa1185980:intron 30.0%
TGAAGTTAACCCAATCAAAA+GGG + chr8_1:23882534-23882553 Msa1185980:intron 30.0%
AATTATAGTAAGGTTCTTCC+TGG - chr8_1:23882595-23882614 None:intergenic 30.0%
ATCACATTTACATGAAACAC+TGG - chr8_1:23882763-23882782 None:intergenic 30.0%
AGAATAAAAGAGTGGAAACA+TGG - chr8_1:23882968-23882987 None:intergenic 30.0%
TTCTATTTGCTTCATGTTAC+AGG + chr8_1:23882984-23883003 Msa1185980:intron 30.0%
! CAAACAAGCTCTAGTTAAAT+TGG + chr8_1:23883038-23883057 Msa1185980:CDS 30.0%
ATGGATTCAGAAGAAAACAA+TGG - chr8_1:23883117-23883136 None:intergenic 30.0%
GTGTACCAATAACAAATCAT+CGG + chr8_1:23883199-23883218 Msa1185980:intron 30.0%
!! ATACACCGATGATTTGTTAT+TGG - chr8_1:23883207-23883226 None:intergenic 30.0%
AAAGTTCTTGTTAGTTGCAT+GGG + chr8_1:23883410-23883429 Msa1185980:intron 30.0%
!!! GCATATACTGATTTTTTTCC+AGG - chr8_1:23883457-23883476 None:intergenic 30.0%
! GTGATTTTTAATGATTGCCT+TGG + chr8_1:23883814-23883833 Msa1185980:intron 30.0%
TGTAAATTCAAATTCGTCCA+AGG - chr8_1:23883834-23883853 None:intergenic 30.0%
ATTGAGATTACTCATCACTT+TGG + chr8_1:23883955-23883974 Msa1185980:intron 30.0%
TTGTCAGGTAAATCAAATTC+CGG + chr8_1:23884042-23884061 Msa1185980:intron 30.0%
!! GTTATTTTCAATAGATGTGC+AGG + chr8_1:23884081-23884100 Msa1185980:intron 30.0%
ATAAGAGGAAAATAAGAAGG+GGG - chr8_1:23884211-23884230 None:intergenic 30.0%
GATTGAATCCTTTCAATTGT+AGG + chr8_1:23884247-23884266 Msa1185980:intron 30.0%
!! AAGGTTTGAAGTTCCTTTTA+TGG + chr8_1:23884331-23884350 Msa1185980:intron 30.0%
!!! TCATCATTTGTTTTTGTTGC+AGG + chr8_1:23884392-23884411 Msa1185980:intron 30.0%
! CGTTTCTTTTAGTAAGAACT+AGG + chr8_1:23884535-23884554 Msa1185980:intron 30.0%
! TCTTTTAGTAAGAACTAGGA+AGG + chr8_1:23884539-23884558 Msa1185980:intron 30.0%
GCACTTATCATTGTAAATCT+AGG - chr8_1:23884565-23884584 None:intergenic 30.0%
CATTGTTTACCAATACTACT+AGG + chr8_1:23884736-23884755 Msa1185980:intron 30.0%
AGTTCATAGCAGTAAATGTT+AGG - chr8_1:23884909-23884928 None:intergenic 30.0%
!! AACATGTATTTTCAGGAAAG+AGG + chr8_1:23884941-23884960 Msa1185980:intron 30.0%
!! ACATGTATTTTCAGGAAAGA+GGG + chr8_1:23884942-23884961 Msa1185980:intron 30.0%
!! TTTTGCTGGTTATACAGGTA+AGG - chr8_1:23878559-23878578 None:intergenic 35.0%
!! TTTTTGGTAGAATCGAAGAG+AGG + chr8_1:23878592-23878611 Msa1185980:five_prime_UTR 35.0%
! AAGGTTTGAGATTTATTGGG+GGG - chr8_1:23878657-23878676 None:intergenic 35.0%
TATCGAAGAATGAATGAGGA+GGG - chr8_1:23878797-23878816 None:intergenic 35.0%
TTATCGAAGAATGAATGAGG+AGG - chr8_1:23878798-23878817 None:intergenic 35.0%
TTGTAATTGCAGACAGTATC+AGG + chr8_1:23878842-23878861 Msa1185980:intron 35.0%
!!! AAGCTATTTTGGTGAGCTTA+TGG + chr8_1:23879126-23879145 Msa1185980:intron 35.0%
GTTCATCATCCATTTACTGT+AGG - chr8_1:23879601-23879620 None:intergenic 35.0%
ATGAACAGTCTTCTCCATTA+AGG + chr8_1:23879615-23879634 Msa1185980:intron 35.0%
AGTCTTCTCCATTAAGGAAA+AGG + chr8_1:23879621-23879640 Msa1185980:intron 35.0%
TTCTCCATTAAGGAAAAGGA+AGG + chr8_1:23879625-23879644 Msa1185980:intron 35.0%
TCTTTCTGTTCTTGAATTGG+TGG - chr8_1:23879726-23879745 None:intergenic 35.0%
!! TTTGTTAATGGGTTTGTGAC+TGG + chr8_1:23879766-23879785 Msa1185980:intron 35.0%
!! TTGTTAATGGGTTTGTGACT+GGG + chr8_1:23879767-23879786 Msa1185980:intron 35.0%
TTCAAATGACCTTCAGGATT+TGG + chr8_1:23879895-23879914 Msa1185980:intron 35.0%
ATGTCAGAATCAGATTTCCA+TGG + chr8_1:23880070-23880089 Msa1185980:intron 35.0%
! TGCCTACAGTTAGTTTCTAT+GGG + chr8_1:23880170-23880189 Msa1185980:intron 35.0%
TTCCCATAGAAACTAACTGT+AGG - chr8_1:23880175-23880194 None:intergenic 35.0%
!! ATAGGCAACTTTAAGGTTGA+AGG - chr8_1:23880208-23880227 None:intergenic 35.0%
TGCCATATGTATGATAAGGA+TGG + chr8_1:23880279-23880298 Msa1185980:intron 35.0%
CACCATCCTTATCATACATA+TGG - chr8_1:23880284-23880303 None:intergenic 35.0%
GATTTCAATAGTCATGCCTT+AGG - chr8_1:23880694-23880713 None:intergenic 35.0%
TCCTAAAAGGATCTTCAGTA+GGG - chr8_1:23880737-23880756 None:intergenic 35.0%
TTCATATGGAAGCTCCTAAA+AGG - chr8_1:23880750-23880769 None:intergenic 35.0%
AGTTGAGAGAAAAGATGGTA+AGG - chr8_1:23880809-23880828 None:intergenic 35.0%
! AGACAAGTTGAGAGAAAAGA+TGG - chr8_1:23880814-23880833 None:intergenic 35.0%
AAGATGATATGGATCCATCA+TGG + chr8_1:23880898-23880917 Msa1185980:CDS 35.0%
AGATGATATGGATCCATCAT+GGG + chr8_1:23880899-23880918 Msa1185980:CDS 35.0%
GATACAAGTAACGCTAACAA+AGG - chr8_1:23881032-23881051 None:intergenic 35.0%
GTTAGCGTTACTTGTATCTT+TGG + chr8_1:23881034-23881053 Msa1185980:intron 35.0%
! GATTTGGTTGAATTAGTTGG+AGG + chr8_1:23881347-23881366 Msa1185980:intron 35.0%
AATCCGTATGTAAGAGCTAA+TGG + chr8_1:23881370-23881389 Msa1185980:intron 35.0%
CAGCAAGACAGTATCTTAAA+AGG - chr8_1:23881557-23881576 None:intergenic 35.0%
!!! TTTTGTAGATTGGTCTCAGA+TGG + chr8_1:23881776-23881795 Msa1185980:intron 35.0%
CATAACCAAGCAAAACTAGT+CGG - chr8_1:23881851-23881870 None:intergenic 35.0%
TCTAGTTAAACATGGGATGA+AGG - chr8_1:23881883-23881902 None:intergenic 35.0%
! TTTTGTGGGAGAAAAACAGA+TGG - chr8_1:23882002-23882021 None:intergenic 35.0%
! TTCCTTGTCATTTCCTATGA+TGG + chr8_1:23882106-23882125 Msa1185980:intron 35.0%
! AATATCTTGGTGACCATCAT+AGG - chr8_1:23882122-23882141 None:intergenic 35.0%
TCTGACAGTCTCAAATATCT+TGG - chr8_1:23882135-23882154 None:intergenic 35.0%
TGCAACAATGCAGTTAGAAT+AGG - chr8_1:23882307-23882326 None:intergenic 35.0%
! AAGCATTGCAATGAGAAAGA+TGG + chr8_1:23882429-23882448 Msa1185980:CDS 35.0%
!! ATTTGACTAGTCTGTTAGAG+AGG + chr8_1:23882502-23882521 Msa1185980:intron 35.0%
!! TTTGACTAGTCTGTTAGAGA+GGG + chr8_1:23882503-23882522 Msa1185980:intron 35.0%
AGAAGACCGTAGAAAACATT+AGG + chr8_1:23882561-23882580 Msa1185980:intron 35.0%
AAACATTAGGAAAAACCACC+AGG + chr8_1:23882574-23882593 Msa1185980:intron 35.0%
!!! GCTGTTGTTTGTCTTGTTTT+AGG + chr8_1:23882690-23882709 Msa1185980:intron 35.0%
ATTAACTTCAGCTCTTCTTG+AGG + chr8_1:23882910-23882929 Msa1185980:intron 35.0%
TTAACTTCAGCTCTTCTTGA+GGG + chr8_1:23882911-23882930 Msa1185980:intron 35.0%
! TTAAATTGGTAGCATGTGAG+AGG + chr8_1:23883052-23883071 Msa1185980:CDS 35.0%
TCAGAAGAAAACAATGGCAT+GGG - chr8_1:23883111-23883130 None:intergenic 35.0%
TTCAGAAGAAAACAATGGCA+TGG - chr8_1:23883112-23883131 None:intergenic 35.0%
AATCCATATCCTCTAGTGAA+GGG + chr8_1:23883130-23883149 Msa1185980:intron 35.0%
ACATTCTACAATTCTCCTTC+TGG + chr8_1:23883268-23883287 Msa1185980:intron 35.0%
TTAAATGTTTGCTCCTCTTC+TGG + chr8_1:23883313-23883332 Msa1185980:intron 35.0%
AACTAACAAGAACTTTGCAC+GGG - chr8_1:23883406-23883425 None:intergenic 35.0%
CAACTAACAAGAACTTTGCA+CGG - chr8_1:23883407-23883426 None:intergenic 35.0%
CAAAGTTCTTGTTAGTTGCA+TGG + chr8_1:23883409-23883428 Msa1185980:intron 35.0%
AATCAGTATATGCTGACCTT+TGG + chr8_1:23883464-23883483 Msa1185980:intron 35.0%
TAATTTCTGTAGTCTGTCTC+TGG + chr8_1:23883535-23883554 Msa1185980:intron 35.0%
TCCTGAATGTCAAAGCATAT+TGG - chr8_1:23883865-23883884 None:intergenic 35.0%
! TGTCTCCTTTCAAGTCATTA+AGG + chr8_1:23883985-23884004 Msa1185980:intron 35.0%
AGAAAGAAGACAACAAAAGC+TGG + chr8_1:23884143-23884162 Msa1185980:CDS 35.0%
! TAGTAGTCTTACAAGTATGC+TGG + chr8_1:23884622-23884641 Msa1185980:intron 35.0%
GTTTCACATCATAATAGGCA+AGG - chr8_1:23884717-23884736 None:intergenic 35.0%
! TCAGCTTTTAAGCATGATCA+TGG + chr8_1:23884801-23884820 Msa1185980:intron 35.0%
! GACAGAATTTTCAGAGTAGA+AGG - chr8_1:23884887-23884906 None:intergenic 35.0%
TAACATAGACGAGTTTCTTG+AGG + chr8_1:23885020-23885039 Msa1185980:CDS 35.0%
AACATAGACGAGTTTCTTGA+GGG + chr8_1:23885021-23885040 Msa1185980:CDS 35.0%
!!! AAGAAACGCTTTTCAGGTAA+TGG - chr8_1:23885078-23885097 None:intergenic 35.0%
GGTAAACATGGAAAAAGGTT+AGG + chr8_1:23885110-23885129 Msa1185980:three_prime_UTR 35.0%
TGCTTAATATACTAGGCAGA+AGG + chr8_1:23885259-23885278 Msa1185980:three_prime_UTR 35.0%
ATGTAGCAGATTCTTCTACT+TGG - chr8_1:23885360-23885379 None:intergenic 35.0%
TCAACTAGCACTTAAACGAG+TGG - chr8_1:23878501-23878520 None:intergenic 40.0%
!! CGATCAGATTTTGGGAACAA+AGG - chr8_1:23878676-23878695 None:intergenic 40.0%
! AGGAGCTACGATCAGATTTT+GGG - chr8_1:23878684-23878703 None:intergenic 40.0%
! AAGGAGCTACGATCAGATTT+TGG - chr8_1:23878685-23878704 None:intergenic 40.0%
GATGTCATGGTGAATGAAGA+AGG - chr8_1:23878704-23878723 None:intergenic 40.0%
TTCATTCACCATGACATCGT+TGG + chr8_1:23878706-23878725 Msa1185980:exon 40.0%
TCATTCACCATGACATCGTT+GGG + chr8_1:23878707-23878726 Msa1185980:exon 40.0%
GAGGAGGGAATGAAAAGAAA+CGG - chr8_1:23878782-23878801 None:intergenic 40.0%
TCCATTAAGGAAAAGGAAGG+AGG + chr8_1:23879628-23879647 Msa1185980:intron 40.0%
TGTGACTGGGATGCTTATAT+TGG + chr8_1:23879780-23879799 Msa1185980:intron 40.0%
!! TATATTGGTTTCCTACGGCT+TGG + chr8_1:23879795-23879814 Msa1185980:intron 40.0%
! AGATTTTATCACCAAGCCGT+AGG - chr8_1:23879809-23879828 None:intergenic 40.0%
! AATGACCTTCAGGATTTGGT+TGG + chr8_1:23879899-23879918 Msa1185980:intron 40.0%
! TTGGTTGGCCACATTGAAAA+AGG + chr8_1:23879914-23879933 Msa1185980:intron 40.0%
! GCAAGTTCCTTTTACCATCT+TGG + chr8_1:23880033-23880052 Msa1185980:intron 40.0%
AGCAGTACCAAGATGGTAAA+AGG - chr8_1:23880043-23880062 None:intergenic 40.0%
ATTCTCTAGCAGTACCAAGA+TGG - chr8_1:23880050-23880069 None:intergenic 40.0%
! GTGCCTACAGTTAGTTTCTA+TGG + chr8_1:23880169-23880188 Msa1185980:intron 40.0%
AGATAAAGACACGCTAAGAG+AGG + chr8_1:23880234-23880253 Msa1185980:CDS 40.0%
GATAAAGACACGCTAAGAGA+GGG + chr8_1:23880235-23880254 Msa1185980:CDS 40.0%
!! TAGCTTGTTGGGTTATCCTT+TGG + chr8_1:23880449-23880468 Msa1185980:intron 40.0%
TAAAAGGATCTTCAGTAGGG+TGG - chr8_1:23880734-23880753 None:intergenic 40.0%
! ACCCTACTGAAGATCCTTTT+AGG + chr8_1:23880733-23880752 Msa1185980:intron 40.0%
CTCCTAAAAGGATCTTCAGT+AGG - chr8_1:23880738-23880757 None:intergenic 40.0%
GAAAAGATGGTAAGGAAGAG+CGG - chr8_1:23880801-23880820 None:intergenic 40.0%
TGCAAGATTTATACGGTCAG+AGG + chr8_1:23880875-23880894 Msa1185980:intron 40.0%
CAGGATTGGGACATTCTATT+TGG + chr8_1:23881190-23881209 Msa1185980:intron 40.0%
GGGGAAATTGACAAATCACA+AGG - chr8_1:23881677-23881696 None:intergenic 40.0%
!!! TTTCACCGACTAGTTTTGCT+TGG + chr8_1:23881843-23881862 Msa1185980:intron 40.0%
AACTATGGGATTCATACGGA+TGG - chr8_1:23882074-23882093 None:intergenic 40.0%
GACCATCATAGGAAATGACA+AGG - chr8_1:23882111-23882130 None:intergenic 40.0%
CAATGCAGTTAGAATAGGAC+AGG - chr8_1:23882302-23882321 None:intergenic 40.0%
GTTAACCCAATCAAAAGGGA+AGG + chr8_1:23882538-23882557 Msa1185980:intron 40.0%
!! CTTCTCCTTCCCTTTTGATT+GGG - chr8_1:23882546-23882565 None:intergenic 40.0%
! TCTTCTCCTTCCCTTTTGAT+TGG - chr8_1:23882547-23882566 None:intergenic 40.0%
TATAGTAAGGTTCTTCCTGG+TGG - chr8_1:23882592-23882611 None:intergenic 40.0%
AACAGCAACACCCACTAAAT+GGG - chr8_1:23882676-23882695 None:intergenic 40.0%
GAATCCATATCCTCTAGTGA+AGG + chr8_1:23883129-23883148 Msa1185980:intron 40.0%
GATATTAGTCCCTTCACTAG+AGG - chr8_1:23883142-23883161 None:intergenic 40.0%
GCCAATATGCTTTGACATTC+AGG + chr8_1:23883861-23883880 Msa1185980:intron 40.0%
CAGGGAAACTTAACTACAAG+AGG + chr8_1:23884100-23884119 Msa1185980:CDS 40.0%
AAAAGCTGGACAGAAGAAAG+AGG + chr8_1:23884157-23884176 Msa1185980:CDS 40.0%
GAGGTGAGAAATGAGAACAT+TGG + chr8_1:23884176-23884195 Msa1185980:intron 40.0%
AGGAAAATAAGAAGGGGGTT+GGG - chr8_1:23884206-23884225 None:intergenic 40.0%
GAACGACTCCTACAATTGAA+AGG - chr8_1:23884258-23884277 None:intergenic 40.0%
! TTCGAAGAGTGATGATGATC+TGG + chr8_1:23884275-23884294 Msa1185980:CDS 40.0%
TCCTTCTCTCTTCACTTTCT+TGG - chr8_1:23884308-23884327 None:intergenic 40.0%
AGTGAAGAGAGAAGGAGAAA+AGG + chr8_1:23884312-23884331 Msa1185980:CDS 40.0%
! GTTTTTGTTGCAGGATAGAC+CGG + chr8_1:23884401-23884420 Msa1185980:intron 40.0%
! TAATGGTTTGCCAAATCGCT+AGG + chr8_1:23884677-23884696 Msa1185980:intron 40.0%
ACTTTCCTAACCTAGCGATT+TGG - chr8_1:23884690-23884709 None:intergenic 40.0%
GCTTAAATCTGACCCATTGT+TGG - chr8_1:23884776-23884795 None:intergenic 40.0%
CAATGGGTCAGATTTAAGCA+AGG + chr8_1:23884777-23884796 Msa1185980:intron 40.0%
!! ATTTTCAGGAAAGAGGGCTT+TGG + chr8_1:23884948-23884967 Msa1185980:intron 40.0%
ACATAGACGAGTTTCTTGAG+GGG + chr8_1:23885022-23885041 Msa1185980:CDS 40.0%
! TGTCTCAAGAAACGCTTTTC+AGG - chr8_1:23885084-23885103 None:intergenic 40.0%
GAGCTGGTAAACATGGAAAA+AGG + chr8_1:23885105-23885124 Msa1185980:three_prime_UTR 40.0%
! TTTAGGGTCAACAAGTTCGA+AGG - chr8_1:23885237-23885256 None:intergenic 40.0%
GAAGAATCTGCTACATGTTC+TGG + chr8_1:23885364-23885383 Msa1185980:three_prime_UTR 40.0%
CTCTTCTCTGTCGAATATCG+CGG - chr8_1:23878744-23878763 None:intergenic 45.0%
CAGTATCAGGCTCATATTCG+AGG + chr8_1:23878855-23878874 Msa1185980:CDS 45.0%
CCTATTGTCCATTCCCAAAC+AGG - chr8_1:23879536-23879555 None:intergenic 45.0%
CCTGTTTGGGAATGGACAAT+AGG + chr8_1:23879533-23879552 Msa1185980:intron 45.0%
! GCCTCCTTCCTTTTCCTTAA+TGG - chr8_1:23879632-23879651 None:intergenic 45.0%
CAGGGGGTTGTTTGAATTTC+CGG - chr8_1:23879664-23879683 None:intergenic 45.0%
ACATGCACGGTTTATAGCAG+GGG - chr8_1:23879681-23879700 None:intergenic 45.0%
GACATGCACGGTTTATAGCA+GGG - chr8_1:23879682-23879701 None:intergenic 45.0%
TGACATGCACGGTTTATAGC+AGG - chr8_1:23879683-23879702 None:intergenic 45.0%
GTGATCTGTCAGAAGTCTGA+TGG + chr8_1:23879848-23879867 Msa1185980:intron 45.0%
CACAGTAAGCTGAAATGCCA+TGG - chr8_1:23880090-23880109 None:intergenic 45.0%
ACACGCTAAGAGAGGGATAT+AGG + chr8_1:23880242-23880261 Msa1185980:CDS 45.0%
AGGATAACCCAACAAGCTAC+TGG - chr8_1:23880448-23880467 None:intergenic 45.0%
ACGGTCAGAGGAAGATGATA+TGG + chr8_1:23880887-23880906 Msa1185980:CDS 45.0%
GACATGTCACAGTACAAGAG+TGG + chr8_1:23881576-23881595 Msa1185980:CDS 45.0%
GTCACAGTACAAGAGTGGTA+AGG + chr8_1:23881581-23881600 Msa1185980:CDS 45.0%
TCTCAGATGGAGAACAGAGA+AGG + chr8_1:23881789-23881808 Msa1185980:CDS 45.0%
ACAGAGAAGGAAGTCATGTC+TGG + chr8_1:23881802-23881821 Msa1185980:CDS 45.0%
AAGGAAGTCATGTCTGGCAA+AGG + chr8_1:23881808-23881827 Msa1185980:CDS 45.0%
! GTCATGTCTGGCAAAGGTAT+TGG + chr8_1:23881814-23881833 Msa1185980:intron 45.0%
!! AGATGGATTAGCAAGCTACG+AGG + chr8_1:23882446-23882465 Msa1185980:CDS 45.0%
GATTAGCAAGCTACGAGGTA+AGG + chr8_1:23882451-23882470 Msa1185980:intron 45.0%
ACTAAATGGGGACAGCTACA+TGG - chr8_1:23882663-23882682 None:intergenic 45.0%
ATGTAGCTGTCCCCATTTAG+TGG + chr8_1:23882662-23882681 Msa1185980:intron 45.0%
TGTAGCTGTCCCCATTTAGT+GGG + chr8_1:23882663-23882682 Msa1185980:intron 45.0%
ACAGCAACACCCACTAAATG+GGG - chr8_1:23882675-23882694 None:intergenic 45.0%
CAACAGCAACACCCACTAAA+TGG - chr8_1:23882677-23882696 None:intergenic 45.0%
ATGGCATGGGCAACAAAACT+TGG - chr8_1:23883098-23883117 None:intergenic 45.0%
AGTCCCTTCACTAGAGGATA+TGG - chr8_1:23883136-23883155 None:intergenic 45.0%
CTACAAGAGGCAGAAAGAGA+AGG + chr8_1:23884113-23884132 Msa1185980:CDS 45.0%
GAAAATAAGAAGGGGGTTGG+GGG - chr8_1:23884204-23884223 None:intergenic 45.0%
GGAAAATAAGAAGGGGGTTG+GGG - chr8_1:23884205-23884224 None:intergenic 45.0%
GAGGAAAATAAGAAGGGGGT+TGG - chr8_1:23884207-23884226 None:intergenic 45.0%
! AGTGATGATGATCTGGACGA+GGG + chr8_1:23884282-23884301 Msa1185980:CDS 45.0%
GCCAAGAAAGTGAAGAGAGA+AGG + chr8_1:23884304-23884323 Msa1185980:CDS 45.0%
GTTTGCCAAATCGCTAGGTT+AGG + chr8_1:23884682-23884701 Msa1185980:intron 45.0%
GAGACAAGAGCTGGTAAACA+TGG + chr8_1:23885098-23885117 Msa1185980:three_prime_UTR 45.0%
GAAAAAGGTTAGGCAGTGCT+GGG + chr8_1:23885120-23885139 Msa1185980:three_prime_UTR 45.0%
!!! TTTTATTTTTTTTCTTTTTT+TGG - chr8_1:23880665-23880684 None:intergenic 5.0%
!! ATATAATAATTTATCTAAAA+TGG + chr8_1:23881441-23881460 Msa1185980:intron 5.0%
!!! TTTTTTTTTTAAATAATTGA+AGG + chr8_1:23884019-23884038 Msa1185980:intron 5.0%
CGAAGAGAGGATTGCGAAAC+TGG + chr8_1:23878605-23878624 Msa1185980:five_prime_UTR 50.0%
CAGAGATCCCAACGATGTCA+TGG - chr8_1:23878717-23878736 None:intergenic 50.0%
CATGCACGGTTTATAGCAGG+GGG - chr8_1:23879680-23879699 None:intergenic 50.0%
TGTGGCCAACCAAATCCTGA+AGG - chr8_1:23879907-23879926 None:intergenic 50.0%
TGGATCCATCATGGGAGCAA+AGG + chr8_1:23880907-23880926 Msa1185980:CDS 50.0%
TCAGCTCTTCTTGAGGGCTA+AGG + chr8_1:23882917-23882936 Msa1185980:intron 50.0%
!! GGCAGGAAGCATTATCCAGA+AGG - chr8_1:23883286-23883305 None:intergenic 50.0%
! GAGTGATGATGATCTGGACG+AGG + chr8_1:23884281-23884300 Msa1185980:CDS 50.0%
GCGTTTCTTGAGACAAGAGC+TGG + chr8_1:23885089-23885108 Msa1185980:three_prime_UTR 50.0%
GGAAAAAGGTTAGGCAGTGC+TGG + chr8_1:23885119-23885138 Msa1185980:three_prime_UTR 50.0%
TGGGAGCAAGTGGATAATGC+AGG + chr8_1:23885139-23885158 Msa1185980:three_prime_UTR 50.0%
GGAAGGAGGCTACAGTCATC+CGG + chr8_1:23879642-23879661 Msa1185980:intron 55.0%
TCCATCATGGGAGCAAAGGC+TGG + chr8_1:23880911-23880930 Msa1185980:CDS 55.0%
ACCAGCCTTTGCTCCCATGA+TGG - chr8_1:23880915-23880934 None:intergenic 55.0%
! TAGGCAGTGCTGGGAGCAAG+TGG + chr8_1:23885129-23885148 Msa1185980:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 23878494 23885484 23878494 ID=Msa1185980;Name=Msa1185980
chr8_1 mRNA 23878494 23885484 23878494 ID=Msa1185980-mRNA-1;Parent=Msa1185980;Name=Msa1185980-mRNA-1;_AED=0.09;_eAED=0.09;_QI=222|1|1|1|0.9|0.90|11|428|251
chr8_1 exon 23878494 23878771 23878494 ID=Msa1185980-mRNA-1:exon:8649;Parent=Msa1185980-mRNA-1
chr8_1 exon 23878854 23878921 23878854 ID=Msa1185980-mRNA-1:exon:8650;Parent=Msa1185980-mRNA-1
chr8_1 exon 23880179 23880263 23880179 ID=Msa1185980-mRNA-1:exon:8651;Parent=Msa1185980-mRNA-1
chr8_1 exon 23880881 23880964 23880881 ID=Msa1185980-mRNA-1:exon:8652;Parent=Msa1185980-mRNA-1
chr8_1 exon 23881563 23881602 23881563 ID=Msa1185980-mRNA-1:exon:8653;Parent=Msa1185980-mRNA-1
chr8_1 exon 23881784 23881829 23881784 ID=Msa1185980-mRNA-1:exon:8654;Parent=Msa1185980-mRNA-1
chr8_1 exon 23882409 23882467 23882409 ID=Msa1185980-mRNA-1:exon:8655;Parent=Msa1185980-mRNA-1
chr8_1 exon 23883006 23883073 23883006 ID=Msa1185980-mRNA-1:exon:8656;Parent=Msa1185980-mRNA-1
chr8_1 exon 23884095 23884178 23884095 ID=Msa1185980-mRNA-1:exon:8657;Parent=Msa1185980-mRNA-1
chr8_1 exon 23884269 23884333 23884269 ID=Msa1185980-mRNA-1:exon:8658;Parent=Msa1185980-mRNA-1
chr8_1 exon 23884956 23885484 23884956 ID=Msa1185980-mRNA-1:exon:8659;Parent=Msa1185980-mRNA-1
chr8_1 five_prime_UTR 23878494 23878715 23878494 ID=Msa1185980-mRNA-1:five_prime_utr;Parent=Msa1185980-mRNA-1
chr8_1 CDS 23878716 23878771 23878716 ID=Msa1185980-mRNA-1:cds;Parent=Msa1185980-mRNA-1
chr8_1 CDS 23878854 23878921 23878854 ID=Msa1185980-mRNA-1:cds;Parent=Msa1185980-mRNA-1
chr8_1 CDS 23880179 23880263 23880179 ID=Msa1185980-mRNA-1:cds;Parent=Msa1185980-mRNA-1
chr8_1 CDS 23880881 23880964 23880881 ID=Msa1185980-mRNA-1:cds;Parent=Msa1185980-mRNA-1
chr8_1 CDS 23881563 23881602 23881563 ID=Msa1185980-mRNA-1:cds;Parent=Msa1185980-mRNA-1
chr8_1 CDS 23881784 23881829 23881784 ID=Msa1185980-mRNA-1:cds;Parent=Msa1185980-mRNA-1
chr8_1 CDS 23882409 23882467 23882409 ID=Msa1185980-mRNA-1:cds;Parent=Msa1185980-mRNA-1
chr8_1 CDS 23883006 23883073 23883006 ID=Msa1185980-mRNA-1:cds;Parent=Msa1185980-mRNA-1
chr8_1 CDS 23884095 23884178 23884095 ID=Msa1185980-mRNA-1:cds;Parent=Msa1185980-mRNA-1
chr8_1 CDS 23884269 23884333 23884269 ID=Msa1185980-mRNA-1:cds;Parent=Msa1185980-mRNA-1
chr8_1 CDS 23884956 23885056 23884956 ID=Msa1185980-mRNA-1:cds;Parent=Msa1185980-mRNA-1
chr8_1 three_prime_UTR 23885057 23885484 23885057 ID=Msa1185980-mRNA-1:three_prime_utr;Parent=Msa1185980-mRNA-1
Gene Sequence

>Msa1185980

ATGACATCGTTGGGATCTCTGAAATCCGCGATATTCGACAGAGAAGAGAGAAAACAACAGTATCAGGCTCATATTCGAGGTCTTAATGCATACGATCGCCACAAAAAGTTTATCAACGATTACGTTAGTTTCTATGGGAAAGAAGAAAAACCTTCAACCTTAAAGTTGCCTATTAAAACAGATAAAGACACGCTAAGAGAGGGATATAGATTTATACGGTCAGAGGAAGATGATATGGATCCATCATGGGAGCAAAGGCTGGTGAAGCGTTATTATGCTAAGCTTTTTAAGGAATACTGTCTTGCTGACATGTCACAGTACAAGAGTGGTAAGATTGGTCTCAGATGGAGAACAGAGAAGGAAGTCATGTCTGGCAAAGGTCAGTTTATATGCGGCAACAAGCATTGCAATGAGAAAGATGGATTAGCAAGCTACGAGGTGAACTTTTGTTATTTTGAAGCAGGAGAGAACAAACAAGCTCTAGTTAAATTGGTAGCATGTGAGAGATGTGCAGGGAAACTTAACTACAAGAGGCAGAAAGAGAAGGAGCAATTAGAAAGAAGACAACAAAAGCTGGACAGAAGAAAGAGGAGTCGTTCGAAGAGTGATGATGATCTGGACGAGGGCCAAGAAAGTGAAGAGAGAAGGAGAAAAGGAAAGAGGGCTTTGGTTTCAGCCAGTGATCATAAAATTGATGATGATAATGATTCTGATGATGATAACATAGACGAGTTTCTTGAGGGGATGTTTCCCTGA

Protein sequence

>Msa1185980

MTSLGSLKSAIFDREERKQQYQAHIRGLNAYDRHKKFINDYVSFYGKEEKPSTLKLPIKTDKDTLREGYRFIRSEEDDMDPSWEQRLVKRYYAKLFKEYCLADMSQYKSGKIGLRWRTEKEVMSGKGQFICGNKHCNEKDGLASYEVNFCYFEAGENKQALVKLVACERCAGKLNYKRQKEKEQLERRQQKLDRRKRSRSKSDDDLDEGQESEERRRKGKRALVSASDHKIDDDNDSDDDNIDEFLEGMFP*