AlfalfaGEDB | Msa1233630

M. sativa cultivar zhongmu-4 / Msa1233630

KEGG: K00454|K15718
GO: -
PFAM: PF01477.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1233630	XP_003627187.1	95.517	870	38	1	1	869	1	870	0.0	1724

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1233630	sp\|P38414\|LOX1_LENCU	81.473	869	158	1	1	869	1	866	0.0	1513

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1233630	G7LIY2	95.517	870	38	1	1	869	1	870	0.0	1724

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0010150	Msa1233630	0.804497	2.100073e-49	-8.615850e-47
Msa0011100	Msa1233630	-0.800171	1.633077e-48	-8.615850e-47
Msa0013270	Msa1233630	0.812564	3.978647e-51	-8.615850e-47
Msa0014590	Msa1233630	0.806843	6.756311e-50	-8.615850e-47
Msa0024280	Msa1233630	0.803021	4.253003e-49	-8.615850e-47
Msa0063540	Msa1233630	0.828181	1.036779e-54	-8.615850e-47
Msa0106540	Msa1233630	0.831037	2.094435e-55	-8.615850e-47
Msa0121320	Msa1233630	0.801754	7.754840e-49	-8.615850e-47
Msa0132080	Msa1233630	-0.811421	7.059664e-51	-8.615850e-47
Msa0140270	Msa1233630	0.803114	4.068250e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1233630	MtrunA17_Chr8g0342971	95.517	870	38	1	1	869	1	870	1724
Msa1233630	MtrunA17_Chr8g0342951	86.191	869	119	1	1	869	1	868	1552
Msa1233630	MtrunA17_Chr8g0344211	82.048	869	155	1	1	869	1	868	1503
Msa1233630	MtrunA17_Chr8g0343011	80.597	871	161	3	1	869	1	865	1456
Msa1233630	MtrunA17_Chr8g0342891	79.094	861	175	2	9	869	6	861	1455
Msa1233630	MtrunA17_Chr8g0342921	77.497	871	192	4	1	869	1	869	1414
Msa1233630	MtrunA17_Chr8g0342931	83.222	751	125	1	119	869	1	750	1330
Msa1233630	MtrunA17_Chr8g0342901	72.106	864	197	8	9	869	6	828	1276
Msa1233630	MtrunA17_Chr2g0329911	70.345	870	248	5	1	869	1	861	1270
Msa1233630	MtrunA17_Chr8g0342881	69.560	864	255	3	6	869	1	856	1257

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1233630	AT1G55020.1	55.236	869	349	11	13	869	19	859	969
Msa1233630	AT3G22400.1	53.934	877	359	11	14	869	34	886	959
Msa1233630	AT1G72520.1	44.647	822	437	11	57	869	114	926	704
Msa1233630	AT1G17420.1	43.468	865	450	14	14	869	85	919	691
Msa1233630	AT3G45140.1	43.321	831	424	19	57	869	95	896	639
Msa1233630	AT3G45140.2	45.065	770	386	17	118	869	4	754	631
Msa1233630	AT1G67560.1	41.877	831	440	19	63	869	106	917	609

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Find 226 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAGCTGATGGTTCCA+TGG	0.534625	8_2:+10486323	None:intergenic
AAACCGTCAATTACACCACC+GGG	0.577826	8_2:+10487035	None:intergenic
AAACTATCACCTTGAGGGTG+TGG	0.543185	8_2:+10484566	None:intergenic
AAAGAGTCCTTTAAAAGGTT+TGG	0.276421	8_2:-10483166	Msa1233630:CDS
AAATAATAAACTGTTCATAC+TGG	0.414321	8_2:-10484720	Msa1233630:CDS
AACAAATAGGCATCTTAGTG+TGG	0.616014	8_2:-10484293	Msa1233630:CDS
AACATGACGATATACGTAGG+GGG	0.738326	8_2:+10482912	None:intergenic
AACCGTCAATTACACCACCG+GGG	0.780189	8_2:+10487036	None:intergenic
AACTGGAGAGCGTAAGGAAT+GGG	0.501583	8_2:-10486047	Msa1233630:CDS
AACTTGCAGCCAAACATGGT+TGG	0.482429	8_2:-10484844	Msa1233630:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCATTAAAGATGAGTTCAT+TGG	-	chr8_2:10482873-10482892	Msa1233630:three_prime_UTR	30.0%
TATATCGAGAATTATCTGCA+AGG	-	chr8_2:10483638-10483657	Msa1233630:CDS	30.0%
TTACGATGTCTACAATGATT+TGG	-	chr8_2:10484018-10484037	Msa1233630:intron	30.0%
TACGATGTCTACAATGATTT+GGG	-	chr8_2:10484019-10484038	Msa1233630:intron	30.0%
AGTCTTAGTAAACAACATCA+GGG	+	chr8_2:10484288-10484307	None:intergenic	30.0%
AAGTCTTAGTAAACAACATC+AGG	+	chr8_2:10484289-10484308	None:intergenic	30.0%
TTCCAAGAGATGAATCATTT+GGG	-	chr8_2:10484525-10484544	Msa1233630:CDS	30.0%
AGTTCACTTAGTATTTCAGT+AGG	+	chr8_2:10484707-10484726	None:intergenic	30.0%
AAATTTCTTACTATGAGCAG+TGG	-	chr8_2:10484889-10484908	Msa1233630:CDS	30.0%
ACACATCATCAAAAAACTCA+CGG	-	chr8_2:10484973-10484992	Msa1233630:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	10482743	10487308	10482743	ID=Msa1233630;Name=Msa1233630
chr8_2	mRNA	10482743	10487308	10482743	ID=Msa1233630-mRNA-1;Parent=Msa1233630;Name=Msa1233630-mRNA-1;_AED=0.28;_eAED=0.28;_QI=140\|1\|1\|1\|1\|1\|9\|263\|869
chr8_2	exon	10482743	10483762	10482743	ID=Msa1233630-mRNA-1:exon:4143;Parent=Msa1233630-mRNA-1
chr8_2	exon	10484091	10484354	10484091	ID=Msa1233630-mRNA-1:exon:4142;Parent=Msa1233630-mRNA-1
chr8_2	exon	10484446	10484750	10484446	ID=Msa1233630-mRNA-1:exon:4141;Parent=Msa1233630-mRNA-1
chr8_2	exon	10484828	10484935	10484828	ID=Msa1233630-mRNA-1:exon:4140;Parent=Msa1233630-mRNA-1
chr8_2	exon	10485057	10485142	10485057	ID=Msa1233630-mRNA-1:exon:4139;Parent=Msa1233630-mRNA-1
chr8_2	exon	10485242	10485562	10485242	ID=Msa1233630-mRNA-1:exon:4138;Parent=Msa1233630-mRNA-1
chr8_2	exon	10485906	10486146	10485906	ID=Msa1233630-mRNA-1:exon:4137;Parent=Msa1233630-mRNA-1
chr8_2	exon	10486261	10486550	10486261	ID=Msa1233630-mRNA-1:exon:4136;Parent=Msa1233630-mRNA-1
chr8_2	exon	10486931	10487308	10486931	ID=Msa1233630-mRNA-1:exon:4135;Parent=Msa1233630-mRNA-1
chr8_2	five_prime_UTR	10487169	10487308	10487169	ID=Msa1233630-mRNA-1:five_prime_utr;Parent=Msa1233630-mRNA-1
chr8_2	CDS	10486931	10487168	10486931	ID=Msa1233630-mRNA-1:cds;Parent=Msa1233630-mRNA-1
chr8_2	CDS	10486261	10486550	10486261	ID=Msa1233630-mRNA-1:cds;Parent=Msa1233630-mRNA-1
chr8_2	CDS	10485906	10486146	10485906	ID=Msa1233630-mRNA-1:cds;Parent=Msa1233630-mRNA-1
chr8_2	CDS	10485242	10485562	10485242	ID=Msa1233630-mRNA-1:cds;Parent=Msa1233630-mRNA-1
chr8_2	CDS	10485057	10485142	10485057	ID=Msa1233630-mRNA-1:cds;Parent=Msa1233630-mRNA-1
chr8_2	CDS	10484828	10484935	10484828	ID=Msa1233630-mRNA-1:cds;Parent=Msa1233630-mRNA-1
chr8_2	CDS	10484446	10484750	10484446	ID=Msa1233630-mRNA-1:cds;Parent=Msa1233630-mRNA-1
chr8_2	CDS	10484091	10484354	10484091	ID=Msa1233630-mRNA-1:cds;Parent=Msa1233630-mRNA-1
chr8_2	CDS	10483006	10483762	10483006	ID=Msa1233630-mRNA-1:cds;Parent=Msa1233630-mRNA-1
chr8_2	three_prime_UTR	10482743	10483005	10482743	ID=Msa1233630-mRNA-1:three_prime_utr;Parent=Msa1233630-mRNA-1

Gene Sequence

>Msa1233630

ATGAGTTCATTGGTGATAAGTCTCTTTGATAGGCACCAAAAGGTGAAGGGAACTGTGGTGTTGATGCAAAAGAATGTGTTGGACATTAACGAACTCACTGCAGCTCAAAGCCCCGGTGGTGTAATTGACGGTTTCTTCGATTTTGCTGGTGATGTTGCCGGTAATGTACTTGACAGCGCCACCGCCTTGTTCCGCCGTTCTGTGGCTCTCTGGCTGATTAGTGCTACCGTTGTTGATGGAACTGGAAAAGGCAAAGTGGGAGAGAAAACGTTTCTGAAATCTGTTATTACCTCCTTACCAACATTGGGAGATAAACAAAATGCTTTCAGTATTGAATTTGAATGGGACAATGACATGGGAACTCCAGGAGCTTTTTATATCGAGAATTATCTGCAAGGCGGTGAATTCTTCCTTGTGAGCTTGACTCTTGAAGATGTTCCAAACCATGGAACCATCAGCTTTGTTTGCAACTCATGGGTTTACAATGCTAAAAATTACAAAACTAAACGCATTTTCTTTGCCAACAAGACATACCTTCCAAGTGAAACACCAGCTCCATTAGTGTACTACAGACAAGAAGAACTGAAGACTTTAAGAGGAGATGGAACTGGAGAGCGTAAGGAATGGGAAAGAATATATGATTACGATGTCTACAATGATTTGGGTGAGCCTGACAAGAACGCTAGTTTGGCTCGTCCTGTTGTTGGAGGATCTAGCACCTTCCCTTACCCTCGAAGGGGGAGAACCGGCAGGAAACCAGCTAGGAAAGATCCTAAGAGTGAGAGTCGAAGTGACACTGTTTACCTTCCAAGAGATGAATCATTTGGGCACACAAAGTCATCAGACTTTCTTGTTCACATACTCAAATCTGCATCACAAAATGTCATACCTCGGTTGAGATCTATAGTTACATTACAATTCAATCAGCCTGAGTTAAACACTTTTGAAGATGTGCGCTCGCTCTATGAAGGTGGAATTAAGCTTCCTACTGAAATACTAAGTGAACTTAGCCCAATACCATTGTTCAAGGAACTTTTCCGAACTGATGGTGAAGCGGCCCTTAGGTTTCCACCACCAAAAGTGATTCAAGTGGATCATTCTGCATGGATGACTGATGATGAATTTGCAAGGGAGATGATTGCTGGTGTGAATCCACACATCATCAAAAAACTCACGGAGTTTCCACCAAAGAGCAAGTTAGATACCCAACTCTTTGGTAATAATACCAGCACCATAACCAAAGAAAACTTGCAGCCAAACATGGTTGGGGTCACTGTAGAACAGGCTATCCAAAATAATAAACTGTTCATACTGGATCACCACGACCCACTCTTTCCATATTTGAGGAAAATAAATGCAACCGAGACAAAGGCCTATGCTACTAGAACCATCCTTTTCTTGCAAGATGATGGAACTTTGAAGCCATTGGCGATTGAACTAAGTAGGCCACACCCTCAAGGTGATAGTTTTGGTCCTGTTAGCAATGTTTACTTGCCCGCAAGTGAAGGTGTTGAAGCTTCAATTTGGCTCCTTGCCAAGGCTTACGTAATTGTAAATGATTCATGTTATCACCAACTTGTTAGCCATTGGTTGAACACTCATGCTGTTGTTGAGCCATTCGTCATAGCAACAAATAGGCATCTTAGTGTGGTTCACCCTATTCATAAACTTCTGCTTCCACATTATCGTGACACAATGAACATAAATGCATTAGCACGAAATGTGTTGGTTAATGCAGACGGTATTATTGAGTCAACTTTCTTGTGGGGAAAGTATGCTTTGGAAATGTCTTCGGTGGTTTACAAGGATTGGGTTTTCACTGAGCAAGGCCTACCTAATGATCTAATCAAAAGAGGAGTGGCTGCTGAGGACCCTACTTATGCATATGGTCTTCGACTTCTAATAGAGGACTACCCGTATGCTTCAGATGGACTAGAAATATGGGCTGCTATTAAGACATGGGTTGATGAATATGTCAACTTCTACTACAAGTCAGATGCATCTATTGCACAAGATTCTGAACTCCAAGCATTCTGGAAAGAACTTGTAGAGGTCGGTCATGGTGACTTGAAGAATGCAACGTGGTGGTTTAAGATGCAAACTCGTGTGGAGTTGATTGAAGCTTGCACCACCCTCATATGGATTGCTTCAGCACTTCATGCAGCAGTTAATTTTGGACAGTATCCGTATGGAGGATATATCGTTAACCGACCAACTAAAAGCAGAAGATTCATGCCTGAGCAGGGATCCCCCGAGTACGATGAACTTGCTAAGGATTACCAAAAGACCTATTTGAGGACAATCACTCCCAAGAATGATACTCTTACTGACTTGACCATTATAGAGGTCTTGTCTAGGCATGCTTCTGATGAGCAATACCTTGGGGAGAGAATTGAAGGTGATCTCTGGACTTCTGATTCACAGCCAAAAGAGTCCTTTAAAAGGTTTGGAAAGAAGTTAGCTGAAATTGAGCAAAAACTCATTCAAAGGAACAACGATGAGACACTGATGAATCGTAACGGACCAGTGAAGATGCCTTACACTCTGCTTCATCCTTCTAGTGAGGAAGGATTGACTTGCAGAGGCATTCCCAACAGTGTCTCCATCTAA

Protein sequence

>Msa1233630

MSSLVISLFDRHQKVKGTVVLMQKNVLDINELTAAQSPGGVIDGFFDFAGDVAGNVLDSATALFRRSVALWLISATVVDGTGKGKVGEKTFLKSVITSLPTLGDKQNAFSIEFEWDNDMGTPGAFYIENYLQGGEFFLVSLTLEDVPNHGTISFVCNSWVYNAKNYKTKRIFFANKTYLPSETPAPLVYYRQEELKTLRGDGTGERKEWERIYDYDVYNDLGEPDKNASLARPVVGGSSTFPYPRRGRTGRKPARKDPKSESRSDTVYLPRDESFGHTKSSDFLVHILKSASQNVIPRLRSIVTLQFNQPELNTFEDVRSLYEGGIKLPTEILSELSPIPLFKELFRTDGEAALRFPPPKVIQVDHSAWMTDDEFAREMIAGVNPHIIKKLTEFPPKSKLDTQLFGNNTSTITKENLQPNMVGVTVEQAIQNNKLFILDHHDPLFPYLRKINATETKAYATRTILFLQDDGTLKPLAIELSRPHPQGDSFGPVSNVYLPASEGVEASIWLLAKAYVIVNDSCYHQLVSHWLNTHAVVEPFVIATNRHLSVVHPIHKLLLPHYRDTMNINALARNVLVNADGIIESTFLWGKYALEMSSVVYKDWVFTEQGLPNDLIKRGVAAEDPTYAYGLRLLIEDYPYASDGLEIWAAIKTWVDEYVNFYYKSDASIAQDSELQAFWKELVEVGHGDLKNATWWFKMQTRVELIEACTTLIWIASALHAAVNFGQYPYGGYIVNRPTKSRRFMPEQGSPEYDELAKDYQKTYLRTITPKNDTLTDLTIIEVLSRHASDEQYLGERIEGDLWTSDSQPKESFKRFGKKLAEIEQKLIQRNNDETLMNRNGPVKMPYTLLHPSSEEGLTCRGIPNSVSI*