AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0548790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548790 MtrunA17_Chr4g0033311 96.987 531 16 0 1 531 1 531 0.0 1072
Msa0548790 MtrunA17_Chr3g0088441 88.136 531 62 1 1 531 1 530 0.0 995
Msa0548790 MtrunA17_Chr4g0033401 74.472 521 125 2 3 522 4 517 0.0 830
Msa0548790 MtrunA17_Chr4g0033321 74.038 520 128 2 3 522 4 516 0.0 828
Msa0548790 MtrunA17_Chr4g0033331 75.952 499 119 1 21 519 22 519 0.0 820
Msa0548790 MtrunA17_Chr2g0329201 70.291 515 145 1 1 515 1 507 0.0 770
Msa0548790 MtrunA17_Chr2g0329191 70.693 505 147 1 11 515 6 509 0.0 761
Msa0548790 MtrunA17_Chr6g0482131 67.311 517 166 2 1 517 1 514 0.0 741
Msa0548790 MtrunA17_Chr4g0033191 65.192 520 178 1 2 518 3 522 0.0 732
Msa0548790 MtrunA17_Chr4g0033341 67.525 505 160 2 12 515 42 543 0.0 729
Msa0548790 MtrunA17_Chr4g0033201 66.272 507 171 0 9 515 6 512 0.0 729
Msa0548790 MtrunA17_Chr6g0482071 66.859 519 164 3 1 516 1 514 0.0 728
Msa0548790 MtrunA17_Chr4g0033271 65.759 514 171 1 2 515 3 511 0.0 727
Msa0548790 MtrunA17_Chr2g0329321 64.865 518 149 4 1 515 1 488 0.0 705
Msa0548790 MtrunA17_Chr6g0482081 66.211 512 170 2 6 516 5 514 0.0 702
Msa0548790 MtrunA17_Chr4g0033261 61.612 521 168 4 1 516 1 494 0.0 659
Msa0548790 MtrunA17_Chr5g0430451 61.905 525 163 4 1 515 1 498 0.0 631
Msa0548790 MtrunA17_Chr4g0033231 59.960 502 169 4 21 516 19 494 0.0 630
Msa0548790 MtrunA17_Chr4g0010501 59.708 479 187 3 37 515 22 494 0.0 609
Msa0548790 MtrunA17_Chr4g0006111 58.012 493 167 7 35 515 61 525 0.0 580
Msa0548790 MtrunA17_Chr3g0087261 54.207 511 224 6 6 515 8 509 0.0 558
Msa0548790 MtrunA17_Chr4g0006131 55.859 512 183 10 16 514 19 500 0.0 553
Msa0548790 MtrunA17_Chr3g0087271 53.516 512 231 4 4 515 6 510 0.0 552
Msa0548790 MtrunA17_Chr4g0043091 52.342 491 224 6 28 514 18 502 0.0 535
Msa0548790 MtrunA17_Chr4g0042171 50.518 483 233 4 38 517 23 502 7.44e-171 493
Msa0548790 MtrunA17_Chr6g0482941 47.656 512 257 6 5 516 13 513 2.83e-168 486
Msa0548790 MtrunA17_Chr6g0482951 46.289 512 264 6 5 516 13 513 1.35e-164 477
Msa0548790 MtrunA17_Chr2g0301231 56.802 419 144 6 107 515 1 392 1.98e-162 467
Msa0548790 MtrunA17_Chr3g0090111 47.934 484 228 7 39 517 19 483 4.83e-160 464
Msa0548790 MtrunA17_Chr3g0090131 47.917 480 235 5 36 514 18 483 6.86e-160 464
Msa0548790 MtrunA17_Chr2g0317841 45.866 508 257 7 10 513 10 503 1.29e-157 459
Msa0548790 MtrunA17_Chr2g0317821 46.654 508 253 7 10 513 10 503 2.56e-157 459
Msa0548790 MtrunA17_Chr4g0074561 47.468 474 242 5 44 513 40 510 1.26e-156 457
Msa0548790 MtrunA17_Chr2g0288071 47.401 481 246 5 48 525 76 552 4.02e-153 449
Msa0548790 MtrunA17_Chr4g0074551 47.368 475 244 5 44 516 55 525 3.14e-152 447
Msa0548790 MtrunA17_Chr2g0288021 44.123 519 271 7 5 519 10 513 3.93e-150 440
Msa0548790 MtrunA17_Chr7g0242691 46.473 482 240 7 38 516 30 496 2.18e-149 438
Msa0548790 MtrunA17_Chr5g0428831 45.418 491 237 10 33 514 21 489 1.51e-145 428
Msa0548790 MtrunA17_Chr7g0242681 46.694 484 229 9 39 514 38 500 2.24e-145 428
Msa0548790 MtrunA17_Chr4g0006971 44.715 492 254 7 38 526 26 502 7.98e-144 424
Msa0548790 MtrunA17_Chr1g0195611 46.012 489 236 11 33 514 21 488 2.07e-142 420
Msa0548790 MtrunA17_Chr3g0087201 57.958 333 135 2 183 515 17 344 2.78e-139 406
Msa0548790 MtrunA17_Chr5g0418871 57.525 299 124 2 58 356 2 297 7.64e-126 371
Msa0548790 MtrunA17_Chr7g0234091 43.064 483 249 8 40 518 76 536 3.87e-123 372
Msa0548790 MtrunA17_Chr7g0234111 43.933 478 248 6 40 516 76 534 4.41e-123 371
Msa0548790 MtrunA17_Chr1g0195641 48.855 393 176 9 41 425 29 404 9.41e-123 366
Msa0548790 MtrunA17_Chr7g0234131 42.887 478 248 7 40 513 76 532 3.12e-121 367
Msa0548790 MtrunA17_Chr7g0230651 43.733 375 195 4 86 460 18 376 4.06e-100 307
Msa0548790 MtrunA17_Chr3g0087191 71.918 146 41 0 37 182 20 165 6.33e-76 237
Msa0548790 MtrunA17_Chr7g0227561 40.221 271 123 5 41 308 48 282 5.33e-61 203
Msa0548790 MtrunA17_Chr7g0236731 46.383 235 119 2 127 360 27 255 1.03e-59 199
Msa0548790 MtrunA17_Chr4g0068871 27.670 412 219 13 103 505 183 524 2.49e-30 125
Msa0548790 MtrunA17_Chr5g0418861 50.000 90 44 1 425 513 1 90 8.44e-24 95.5
Msa0548790 MtrunA17_Chr8g0352881 45.833 96 52 0 265 360 57 152 1.74e-23 97.1
Msa0548790 MtrunA17_Chr8g0352881 47.143 70 36 1 48 117 7 75 4.26e-13 67.4
Msa0548790 MtrunA17_Chr7g0227591 51.923 52 25 0 462 513 14 65 2.81e-11 59.3
Msa0548790 MtrunA17_Chr2g0288031 49.153 59 29 1 190 248 3 60 4.54e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0548790 AT2G44480.1 57.380 481 204 1 37 517 33 512 0.0 594
Msa0548790 AT2G44480.3 57.380 481 204 1 37 517 64 543 0.0 594
Msa0548790 AT5G44640.1 53.229 511 226 4 9 518 8 506 0.0 575
Msa0548790 AT5G42260.1 54.762 504 215 4 7 509 6 497 0.0 573
Msa0548790 AT2G44450.1 56.067 478 205 2 39 516 31 503 0.0 571
Msa0548790 AT3G60130.1 55.556 477 206 3 39 514 30 501 0.0 558
Msa0548790 AT3G60140.1 50.685 511 236 5 8 515 7 504 0.0 545
Msa0548790 AT5G24550.1 53.455 492 216 6 39 522 32 518 0.0 542
Msa0548790 AT2G25630.1 54.054 481 196 5 39 516 30 488 0.0 536
Msa0548790 AT5G24540.1 53.292 486 222 5 39 520 32 516 0.0 528
Msa0548790 AT1G51470.1 53.125 480 211 7 38 515 44 511 0.0 527
Msa0548790 AT1G47600.1 52.708 480 213 7 38 515 44 511 0.0 522
Msa0548790 AT1G47600.2 52.708 480 212 7 38 515 44 510 0.0 520
Msa0548790 AT2G44470.3 50.208 480 235 4 39 515 29 507 7.21e-179 516
Msa0548790 AT1G26560.1 50.103 487 233 5 36 517 29 510 3.20e-178 511
Msa0548790 AT3G60120.1 51.559 481 228 5 38 515 13 491 3.29e-178 513
Msa0548790 AT2G44490.1 51.452 482 228 5 38 514 13 493 2.11e-177 511
Msa0548790 AT2G44480.2 55.718 411 181 1 107 517 1 410 2.89e-175 500
Msa0548790 AT2G44460.1 50.000 498 244 5 35 529 25 520 1.98e-174 504
Msa0548790 AT5G54570.1 50.936 481 227 4 38 513 29 505 8.50e-174 501
Msa0548790 AT3G18080.1 50.000 486 235 6 34 518 34 512 1.84e-168 487
Msa0548790 AT5G25980.2 46.139 531 275 9 3 529 15 538 1.39e-165 481
Msa0548790 AT3G60130.2 54.458 415 183 3 101 514 40 449 5.44e-164 474
Msa0548790 AT5G36890.2 49.583 480 229 4 40 518 17 484 2.09e-161 468
Msa0548790 AT5G36890.1 49.583 480 229 4 40 518 17 484 2.53e-161 468
Msa0548790 AT3G18070.3 46.708 486 243 7 34 518 25 495 3.84e-161 468
Msa0548790 AT2G32860.1 47.119 486 251 5 38 519 93 576 1.49e-160 470
Msa0548790 AT3G09260.1 46.939 490 253 6 39 524 35 521 1.59e-160 467
Msa0548790 AT3G18070.1 46.708 486 249 7 34 518 25 501 5.60e-160 465
Msa0548790 AT2G32860.2 46.392 485 257 3 38 519 93 577 3.69e-159 467
Msa0548790 AT3G03640.1 44.084 524 274 6 1 515 1 514 5.58e-158 461
Msa0548790 AT3G60130.3 53.494 415 176 4 101 514 40 438 4.35e-157 456
Msa0548790 AT1G75940.1 47.143 490 245 8 39 518 37 522 1.18e-156 457
Msa0548790 AT3G21370.1 46.721 488 242 9 38 514 32 512 1.27e-155 454
Msa0548790 AT5G24540.2 52.123 424 199 4 39 459 32 454 9.65e-154 447
Msa0548790 AT5G28510.1 46.901 484 245 7 39 513 39 519 3.93e-153 449
Msa0548790 AT1G66280.1 46.602 515 253 9 6 513 11 510 5.38e-153 448
Msa0548790 AT5G26000.1 46.169 522 253 11 7 513 3 511 7.29e-153 448
Msa0548790 AT2G44470.1 48.463 423 215 3 39 459 29 450 3.40e-152 443
Msa0548790 AT1G52400.3 46.074 484 251 8 39 516 39 518 1.14e-151 444
Msa0548790 AT1G52400.1 46.074 484 251 8 39 516 39 518 1.14e-151 444
Msa0548790 AT1G66270.1 45.472 508 267 7 22 524 19 521 1.25e-151 444
Msa0548790 AT3G60140.2 48.926 419 199 4 8 424 7 412 9.75e-151 440
Msa0548790 AT5G54570.3 50.117 427 205 3 38 460 29 451 3.03e-150 438
Msa0548790 AT1G66270.2 45.079 508 267 8 22 524 19 519 3.61e-148 436
Msa0548790 AT1G02850.2 46.960 477 234 7 40 514 27 486 5.38e-148 434
Msa0548790 AT5G54570.2 50.728 412 194 4 107 513 1 408 7.74e-144 421
Msa0548790 AT4G27830.1 45.342 483 243 7 35 513 19 484 8.33e-144 424
Msa0548790 AT1G61820.1 43.878 490 269 6 33 519 24 510 1.35e-143 424
Msa0548790 AT1G02850.5 45.000 500 233 8 40 514 27 509 8.45e-143 422
Msa0548790 AT5G25980.3 45.870 460 240 7 3 460 15 467 2.69e-142 418
Msa0548790 AT5G25980.1 45.870 460 240 7 3 460 15 467 2.69e-142 418
Msa0548790 AT1G60090.2 43.275 513 256 9 12 520 8 489 1.07e-141 418
Msa0548790 AT1G02850.4 45.309 501 231 9 40 514 27 510 1.14e-141 419
Msa0548790 AT2G44480.4 63.245 302 110 1 37 338 64 364 1.25e-141 414
Msa0548790 AT4G21760.2 41.779 517 286 8 5 519 24 527 1.93e-140 416
Msa0548790 AT1G60090.1 41.843 521 259 10 12 520 8 496 1.99e-137 407
Msa0548790 AT2G44450.2 53.221 357 162 2 160 516 1 352 2.34e-137 402
Msa0548790 AT4G27820.1 45.833 480 237 7 38 513 22 482 1.31e-136 405
Msa0548790 AT1G02850.1 45.073 477 216 8 40 514 27 459 9.63e-136 402
Msa0548790 AT1G61810.1 43.182 484 265 6 39 517 33 511 1.66e-135 403
Msa0548790 AT3G62750.1 43.361 482 241 8 36 513 20 473 4.56e-135 401
Msa0548790 AT3G62750.2 43.361 482 241 8 36 513 46 499 1.08e-134 401
Msa0548790 AT4G21760.1 41.553 515 280 10 5 519 24 517 1.30e-134 401
Msa0548790 AT5G26000.2 45.824 467 227 9 7 460 3 456 2.51e-134 398
Msa0548790 AT4G22100.1 42.887 485 255 8 40 520 23 489 2.38e-133 397
Msa0548790 AT1G61810.3 43.469 467 254 6 39 500 33 494 2.85e-130 390
Msa0548790 AT1G45191.4 42.400 500 250 10 40 531 30 499 3.51e-129 386
Msa0548790 AT2G44470.2 50.448 335 164 2 39 372 29 362 3.99e-129 382
Msa0548790 AT1G45191.2 41.649 485 261 9 40 520 30 496 1.28e-126 380
Msa0548790 AT1G52400.2 45.305 426 224 7 39 459 39 460 3.10e-126 377
Msa0548790 AT1G45191.6 41.988 493 253 10 40 520 30 501 3.39e-126 379
Msa0548790 AT1G45191.1 41.551 503 253 11 40 520 30 513 4.25e-124 374
Msa0548790 AT3G62740.1 40.530 491 263 10 28 513 12 478 2.46e-122 369
Msa0548790 AT1G02850.3 45.966 409 186 6 40 424 27 424 2.34e-121 363
Msa0548790 AT3G62750.4 42.791 430 215 7 36 462 46 447 2.67e-117 354
Msa0548790 AT5G48375.1 42.184 467 200 9 17 481 17 415 2.78e-117 353
Msa0548790 AT2G44460.2 49.333 375 186 4 158 529 1 374 6.83e-117 352
Msa0548790 AT1G51490.1 50.143 349 157 7 46 391 27 361 3.49e-113 342
Msa0548790 AT4G27830.2 43.796 411 212 6 107 513 1 396 5.84e-113 342
Msa0548790 AT1G61810.5 43.269 416 226 6 107 517 1 411 3.14e-111 337
Msa0548790 AT2G44480.5 50.662 302 148 1 216 517 6 306 5.31e-111 333
Msa0548790 AT3G18070.4 47.147 333 170 4 34 366 25 351 1.89e-109 331
Msa0548790 AT1G60270.1 46.532 346 176 4 39 382 24 362 4.58e-109 330
Msa0548790 AT3G62750.7 47.692 325 154 4 36 360 20 328 1.36e-108 328
Msa0548790 AT3G62750.8 47.692 325 154 4 36 360 20 328 1.36e-108 328
Msa0548790 AT3G62750.3 47.385 325 155 3 36 360 46 354 1.31e-107 328
Msa0548790 AT3G62740.2 40.596 436 231 9 28 459 12 423 2.64e-107 327
Msa0548790 AT1G61810.4 42.455 391 216 5 39 424 33 419 6.40e-107 326
Msa0548790 AT1G45191.5 47.962 319 158 3 40 358 30 340 1.52e-106 325
Msa0548790 AT1G45191.3 47.962 319 158 3 40 358 30 340 1.76e-106 325
Msa0548790 AT4G27820.2 43.796 411 213 6 107 513 1 397 1.23e-105 323
Msa0548790 AT4G27820.3 43.796 411 213 6 107 513 1 397 1.23e-105 323
Msa0548790 AT3G18070.2 46.061 330 173 4 190 518 99 424 2.01e-102 315
Msa0548790 AT3G18070.2 47.059 68 35 1 34 101 25 91 6.44e-14 74.3
Msa0548790 AT3G62750.6 40.389 411 218 7 107 513 1 388 5.04e-101 311
Msa0548790 AT3G62750.5 40.389 411 218 7 107 513 1 388 5.04e-101 311
Msa0548790 AT1G61820.3 42.162 370 209 5 153 519 4 371 6.23e-99 304
Msa0548790 AT3G18070.7 45.570 316 167 4 204 518 1 312 9.03e-97 296
Msa0548790 AT1G61810.2 47.037 270 141 2 39 308 33 300 2.76e-86 269
Msa0548790 AT1G60270.2 45.683 278 146 3 107 382 1 275 7.60e-81 254
Msa0548790 AT3G18070.5 45.570 237 127 2 191 426 100 335 3.63e-69 226
Msa0548790 AT3G18070.5 47.059 68 35 1 34 101 25 91 4.17e-14 74.3
Msa0548790 AT3G18070.6 44.843 223 121 2 204 425 1 222 1.39e-63 207
Msa0548790 AT5G16580.1 36.755 302 158 7 179 470 21 299 2.83e-51 177
Msa0548790 AT3G06510.2 27.477 444 233 19 102 514 159 544 2.13e-29 123
Msa0548790 AT3G06510.1 25.943 424 231 14 102 514 159 510 8.11e-29 121

Find 105 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTATTTATTTCAGGTTTA+TGG 0.091209 4_1:+43065518 Msa0548790:intron
GTTTGCTTTGTATTGAATTT+TGG 0.170509 4_1:-43065600 None:intergenic
GAACTTTGTTTCAAGGAATT+TGG 0.174740 4_1:+43065086 Msa0548790:CDS
TTCCCTCAAGGCTTTATCTT+TGG 0.178608 4_1:+43063987 Msa0548790:CDS
TCCCTCAAGGCTTTATCTTT+GGG 0.200749 4_1:+43063988 Msa0548790:CDS
TCTATTTACATCACAGAAAA+TGG 0.202373 4_1:+43065966 Msa0548790:CDS
GCCCATTTGCATAGCCATTT+TGG 0.215929 4_1:-43065157 None:intergenic
GAATCACCTCCGGTACAATT+TGG 0.240733 4_1:-43065215 None:intergenic
AAATCTCAAAAGGGCGTAAT+AGG 0.261458 4_1:+43065320 Msa0548790:CDS
TAGTTACTTAACAGATTCTT+TGG 0.293237 4_1:+43065716 Msa0548790:CDS
ACCACAAAGCAGACAACTTC+TGG 0.332456 4_1:-43066430 None:intergenic
TCCGGTTATAGCGTCAGATT+TGG 0.349931 4_1:+43066368 Msa0548790:CDS
TTCTGCGATCGAGCCCTATT+TGG 0.357111 4_1:+43065235 Msa0548790:CDS
CCATGGAGCTACAGCCAAAA+TGG 0.357660 4_1:+43065143 Msa0548790:CDS
GAATTGCAGTTGAGCGCAAC+GGG 0.358303 4_1:+43065844 Msa0548790:intron
GTGGTAGAACACCAAGTATA+TGG 0.359362 4_1:+43064179 Msa0548790:CDS
ACCTTTGTTGATTATAAGAA+TGG 0.360730 4_1:+43066395 Msa0548790:CDS
TTGGTAATGCGTAACCAAAT+AGG 0.369016 4_1:-43065249 None:intergenic
TTTATCTTCGATCTGCCATT+AGG 0.377497 4_1:+43066187 Msa0548790:CDS
CACCGGGTCGTTGCTCTAGT+TGG 0.384109 4_1:+43065186 Msa0548790:CDS
CAATATTCTAGACCAGGATA+TGG 0.394308 4_1:-43064561 None:intergenic
TGCAAATGGGCGAATGGCAC+CGG 0.395385 4_1:+43065169 Msa0548790:CDS
TTGGATACTCACACTATAAG+AGG 0.395389 4_1:-43064957 None:intergenic
AGCCAAAATGGCTATGCAAA+TGG 0.396136 4_1:+43065155 Msa0548790:CDS
GAAGCAATCTTGATACCAAT+AGG 0.412553 4_1:-43065870 None:intergenic
GGATAATCTCCTGATGTTAG+TGG 0.412747 4_1:-43065543 None:intergenic
TGGTAATGCGTAACCAAATA+GGG 0.414370 4_1:-43065248 None:intergenic
CTATGCGGAACTTTGTTTCA+AGG 0.415130 4_1:+43065079 Msa0548790:CDS
ACCAGAAGTTGTCTGCTTTG+TGG 0.415274 4_1:+43066429 Msa0548790:CDS
TACTCTTCTTCTAAAGTTTG+AGG 0.419592 4_1:-43064918 None:intergenic
TTGACATTGCTTCATTGAAT+CGG 0.421400 4_1:+43063958 Msa0548790:CDS
TGGTGATAGAGTCAAGTATT+GGG 0.427511 4_1:+43065106 Msa0548790:CDS
CAAGGCTTTATCTTTGGGGC+TGG 0.428623 4_1:+43063993 Msa0548790:CDS
AAAGTACAAGAAATCTCAAA+AGG 0.432795 4_1:+43065310 Msa0548790:CDS
TCCAAATCTGACGCTATAAC+CGG 0.438855 4_1:-43066369 None:intergenic
GCATAACCTTAGTAGCGAAT+TGG 0.439687 4_1:+43065342 Msa0548790:CDS
GCTTATGTTTCTAATGAGAA+AGG 0.441605 4_1:+43066481 Msa0548790:CDS
CCCCAAAGATAAAGCCTTGA+GGG 0.442020 4_1:-43063989 None:intergenic
TTGGTGATAGAGTCAAGTAT+TGG 0.444972 4_1:+43065105 Msa0548790:CDS
CAAACTTTAGAAGAAGAGTA+TGG 0.448230 4_1:+43064921 Msa0548790:CDS
ATCAGTTGAGGAATCACTCT+TGG 0.455004 4_1:+43066128 Msa0548790:CDS
AATGAAGCAATGTCAAGAAT+AGG 0.456359 4_1:-43063951 None:intergenic
TGTTTGTATGATTAGTTTGA+AGG 0.458490 4_1:+43064142 Msa0548790:intron
ACTCTTCTTCTAAAGTTTGA+GGG 0.459763 4_1:-43064917 None:intergenic
CCCTCAAGGCTTTATCTTTG+GGG 0.461443 4_1:+43063989 Msa0548790:CDS
AAGCAAACTAAACTACTCAT+TGG 0.461970 4_1:+43065615 Msa0548790:CDS
GCCAAAATGGCTATGCAAAT+GGG 0.463040 4_1:+43065156 Msa0548790:CDS
CAAACAGATGGAAAGCTTAG+TGG 0.481170 4_1:+43064700 Msa0548790:intron
ATCAACGAGCTACTAGCTAA+TGG 0.482370 4_1:+43064763 Msa0548790:CDS
ATGTCAAGGGTTATTATGTA+TGG 0.483435 4_1:+43066318 Msa0548790:CDS
AAAAGATCACGAATTCCTCT+TGG 0.485304 4_1:-43065912 None:intergenic
GGCTGGTTCATCTTCCTACC+AGG 0.487180 4_1:+43064010 Msa0548790:CDS
GAGCGCAACGGGAAACCTAT+TGG 0.489460 4_1:+43065855 Msa0548790:CDS
AAGATACCAATTCGCTACTA+AGG 0.501344 4_1:-43065348 None:intergenic
CAAAAGTAATAAAGAAGAGA+AGG 0.503252 4_1:-43063872 None:intergenic
TGGATAAACGTACAACCATT+CGG 0.510822 4_1:-43065892 None:intergenic
CAATGGAAAAGAGTCACTAA+TGG 0.516481 4_1:-43064888 None:intergenic
CAGCGGCATGTGCAAGAAGT+TGG 0.521028 4_1:-43065268 None:intergenic
TTTATGGATCCACTAACATC+AGG 0.523193 4_1:+43065534 Msa0548790:CDS
AAGATCAAGGATGGAAGCAA+TGG 0.523398 4_1:+43064331 Msa0548790:CDS
GATAAAATAGATGACGGTAA+TGG 0.527360 4_1:-43066170 None:intergenic
ACATTCACTCATAGATATCC+TGG 0.528617 4_1:+43064205 Msa0548790:CDS
TGGTAGAACACCAAGTATAT+GGG 0.535693 4_1:+43064180 Msa0548790:CDS
AAAGAATCTGTTAAGTAACT+AGG 0.540529 4_1:-43065714 None:intergenic
TATTTAATTAATTACCTGGT+AGG 0.543420 4_1:-43064024 None:intergenic
GGGTTACTTTGAATGAGCCA+TGG 0.549157 4_1:+43065126 Msa0548790:CDS
TGAGAGCCCTCGTTGGTGCT+AGG 0.551450 4_1:+43065574 Msa0548790:CDS
TTGACATGCAGAAAAGATCA+AGG 0.553913 4_1:+43064318 Msa0548790:intron
TGGTTGAATCCAAATTGTAC+CGG 0.562770 4_1:+43065206 Msa0548790:CDS
CATGCAGAAAAGATCAAGGA+TGG 0.572632 4_1:+43064322 Msa0548790:intron
AATCGGAATAGTTTCCCTCA+AGG 0.572952 4_1:+43063975 Msa0548790:CDS
TTTGAAGGTGCAGCAACAGA+AGG 0.574188 4_1:+43064157 Msa0548790:CDS
TGGATACTCACACTATAAGA+GGG 0.574493 4_1:-43064956 None:intergenic
GTATCAAGATTGCTTCCGAA+TGG 0.575219 4_1:+43065877 Msa0548790:CDS
GCAAATGGGCGAATGGCACC+GGG 0.577373 4_1:+43065170 Msa0548790:CDS
GTATTGATGATATGTGTCAA+TGG 0.577465 4_1:-43064362 None:intergenic
TGGCTATGCAAATGGGCGAA+TGG 0.578351 4_1:+43065163 Msa0548790:CDS
CTCGATCGCAGAATCACCTC+CGG 0.582972 4_1:-43065225 None:intergenic
CAGGGAAGGTGTGAATGTCA+AGG 0.585708 4_1:+43066304 Msa0548790:intron
CGATTCTACATTATCAGTTG+AGG 0.589230 4_1:+43066116 Msa0548790:CDS
GGTTAACAATGGTGCATCAG+AGG 0.590321 4_1:-43065682 None:intergenic
AACCAACTAGAGCAACGACC+CGG 0.592189 4_1:-43065188 None:intergenic
ATCGAAGATAAAATAGATGA+CGG 0.593478 4_1:-43066176 None:intergenic
AAGTACAAGAAATCTCAAAA+GGG 0.596464 4_1:+43065311 Msa0548790:CDS
TCGGATTTGGAATTTGAGAG+TGG 0.600864 4_1:-43065371 None:intergenic
AGTGGTGGTGTCAATCAAGA+AGG 0.603295 4_1:+43064718 Msa0548790:CDS
GTGAATGTGTCCCATATACT+TGG 0.603407 4_1:-43064190 None:intergenic
AGGGAAGGTGTGAATGTCAA+GGG 0.604977 4_1:+43066305 Msa0548790:intron
TGAATTGCAGTTGAGCGCAA+CGG 0.606152 4_1:+43065843 Msa0548790:intron
TAAGTAACTAGGTCTAGCAT+TGG 0.612411 4_1:-43065703 None:intergenic
GCCATTCTTATAATCAACAA+AGG 0.615945 4_1:-43066396 None:intergenic
ACTTGGCAATATTCTAGACC+AGG 0.618905 4_1:-43064567 None:intergenic
GAAGGTGCAGCAACAGAAGG+TGG 0.627337 4_1:+43064160 Msa0548790:CDS
TTGAATCCAAATTGTACCGG+AGG 0.632737 4_1:+43065209 Msa0548790:CDS
AAGTTTGAGGGAGATCCCAA+TGG 0.634673 4_1:-43064905 None:intergenic
TGGTTGTACGTTTATCCAAG+AGG 0.645166 4_1:+43065897 Msa0548790:CDS
AAAAGCATGAGAGCCCTCGT+TGG 0.645860 4_1:+43065567 Msa0548790:CDS
GGTCTAGCATTGGTTAACAA+TGG 0.647381 4_1:-43065693 None:intergenic
GCCCCAAAGATAAAGCCTTG+AGG 0.657999 4_1:-43063990 None:intergenic
CTTGTACACATCAACAACAG+CGG 0.662238 4_1:-43065285 None:intergenic
ACAGATGGAAAGCTTAGTGG+TGG 0.663853 4_1:+43064703 Msa0548790:intron
TGACACATATCATCAATACA+AGG 0.667772 4_1:+43064366 Msa0548790:CDS
ACTTTAGAAGAAGAGTATGG+TGG 0.678058 4_1:+43064924 Msa0548790:CDS
TGGTAACCTAGCACCAACGA+GGG 0.696965 4_1:-43065580 None:intergenic
TTGGTAACCTAGCACCAACG+AGG 0.706174 4_1:-43065581 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATTTAATTAATTACC+TGG - chr4_1:43064031-43064050 None:intergenic 10.0%
!! AATTGATTATCAAATATTAT+AGG + chr4_1:43064858-43064877 Msa0548790:intron 10.0%
!!! TTTTTTAAGATACATAAAAA+TGG - chr4_1:43065463-43065482 None:intergenic 10.0%
!! AATTCAAATTTATTTATTTC+AGG + chr4_1:43065511-43065530 Msa0548790:intron 10.0%
!!! AAGTATTTTAGTAAATTATA+GGG - chr4_1:43065778-43065797 None:intergenic 10.0%
!! AAAACTATGATTATATATAA+AGG - chr4_1:43066004-43066023 None:intergenic 10.0%
!! AAAAAAAAATGACAAATTTG+TGG + chr4_1:43065477-43065496 Msa0548790:intron 15.0%
!!! ATTTATTTATTTCAGGTTTA+TGG + chr4_1:43065518-43065537 Msa0548790:intron 15.0%
!!! GAAGTATTTTAGTAAATTAT+AGG - chr4_1:43065779-43065798 None:intergenic 15.0%
!! TATTTAATTAATTACCTGGT+AGG - chr4_1:43064027-43064046 None:intergenic 20.0%
!! AATTTACAATTTGTACAACT+TGG + chr4_1:43064294-43064313 Msa0548790:intron 20.0%
!! ACTTCAATAATTATGTGTAT+AGG + chr4_1:43064411-43064430 Msa0548790:intron 20.0%
!!! TTGTTGTTCATTTGTATTAT+AGG + chr4_1:43064490-43064509 Msa0548790:intron 20.0%
!! AATTAATTTATCCAAACAGA+TGG + chr4_1:43064688-43064707 Msa0548790:intron 20.0%
!!! ATTGGTTCATTTGATTTTAT+TGG + chr4_1:43065633-43065652 Msa0548790:CDS 20.0%
!! TAAATTATAGGGTTGTAAAA+TGG - chr4_1:43065767-43065786 None:intergenic 20.0%
!!! AATTCAATGTTTTTTGACAA+TGG + chr4_1:43065800-43065819 Msa0548790:intron 20.0%
!! CTATGATTATATATAAAGGT+AGG - chr4_1:43066000-43066019 None:intergenic 20.0%
!!! ATTCTGCATATTTTAATTGT+AGG + chr4_1:43066078-43066097 Msa0548790:intron 20.0%
!! TGCATCTAATTATATATTAC+AGG + chr4_1:43066285-43066304 Msa0548790:intron 20.0%
!! GCATCTAATTATATATTACA+GGG + chr4_1:43066286-43066305 Msa0548790:intron 20.0%
! CAAAAGTAATAAAGAAGAGA+AGG - chr4_1:43063875-43063894 None:intergenic 25.0%
!!! TGTTTGTATGATTAGTTTGA+AGG + chr4_1:43064142-43064161 Msa0548790:intron 25.0%
! AAGATTTATTTGTTCATACC+AGG - chr4_1:43064226-43064245 None:intergenic 25.0%
!!! ATATATTGACTTGACTTACT+TGG - chr4_1:43064587-43064606 None:intergenic 25.0%
! AGTCAAGTCAATATATATGA+TGG + chr4_1:43064591-43064610 Msa0548790:intron 25.0%
!! GAAGACAATAAACAATGTTT+TGG - chr4_1:43064979-43064998 None:intergenic 25.0%
!!! AAAAGATTTTCAAGACTATG+CGG + chr4_1:43065064-43065083 Msa0548790:CDS 25.0%
! AAAGTACAAGAAATCTCAAA+AGG + chr4_1:43065310-43065329 Msa0548790:CDS 25.0%
! AAGTACAAGAAATCTCAAAA+GGG + chr4_1:43065311-43065330 Msa0548790:CDS 25.0%
!!! AGAGCAATTGATTTTATGTA+TGG + chr4_1:43065410-43065429 Msa0548790:CDS 25.0%
!!! CAATTGATTTTATGTATGGA+TGG + chr4_1:43065414-43065433 Msa0548790:CDS 25.0%
!! GTTTGCTTTGTATTGAATTT+TGG - chr4_1:43065603-43065622 None:intergenic 25.0%
! AAAGAATCTGTTAAGTAACT+AGG - chr4_1:43065717-43065736 None:intergenic 25.0%
! TAGTTACTTAACAGATTCTT+TGG + chr4_1:43065716-43065735 Msa0548790:CDS 25.0%
!! AGGATTATTGTACTTTTCTT+TGG - chr4_1:43065946-43065965 None:intergenic 25.0%
!! TTTTCTGTGATGTAAATAGA+AGG - chr4_1:43065966-43065985 None:intergenic 25.0%
! TCTATTTACATCACAGAAAA+TGG + chr4_1:43065966-43065985 Msa0548790:CDS 25.0%
! ATCGAAGATAAAATAGATGA+CGG - chr4_1:43066179-43066198 None:intergenic 25.0%
!! GAACAATAGAGAAATCTTTT+GGG - chr4_1:43066227-43066246 None:intergenic 25.0%
!! TGAACAATAGAGAAATCTTT+TGG - chr4_1:43066228-43066247 None:intergenic 25.0%
! CTAATTATATATTACAGGGA+AGG + chr4_1:43066290-43066309 Msa0548790:intron 25.0%
!! ACCTTTGTTGATTATAAGAA+TGG + chr4_1:43066395-43066414 Msa0548790:CDS 25.0%
AATGAAGCAATGTCAAGAAT+AGG - chr4_1:43063954-43063973 None:intergenic 30.0%
TTGACATTGCTTCATTGAAT+CGG + chr4_1:43063958-43063977 Msa0548790:CDS 30.0%
! GTATTGATGATATGTGTCAA+TGG - chr4_1:43064365-43064384 None:intergenic 30.0%
TGACACATATCATCAATACA+AGG + chr4_1:43064366-43064385 Msa0548790:CDS 30.0%
! ATTAGTGACTCTTTTCCATT+GGG + chr4_1:43064890-43064909 Msa0548790:CDS 30.0%
!! ACTCTTCTTCTAAAGTTTGA+GGG - chr4_1:43064920-43064939 None:intergenic 30.0%
!! TACTCTTCTTCTAAAGTTTG+AGG - chr4_1:43064921-43064940 None:intergenic 30.0%
! CAAACTTTAGAAGAAGAGTA+TGG + chr4_1:43064921-43064940 Msa0548790:CDS 30.0%
! GAACTTTGTTTCAAGGAATT+TGG + chr4_1:43065086-43065105 Msa0548790:CDS 30.0%
AAGCAAACTAAACTACTCAT+TGG + chr4_1:43065615-43065634 Msa0548790:CDS 30.0%
TATAGGGTTGTAAAATGGAT+TGG - chr4_1:43065762-43065781 None:intergenic 30.0%
AATTCATCGCGAATAGAAAA+GGG - chr4_1:43065829-43065848 None:intergenic 30.0%
TTTCAGCAAGTCATAGAAAA+TGG - chr4_1:43066036-43066055 None:intergenic 30.0%
! GATAAAATAGATGACGGTAA+TGG - chr4_1:43066173-43066192 None:intergenic 30.0%
ATGTCAAGGGTTATTATGTA+TGG + chr4_1:43066318-43066337 Msa0548790:CDS 30.0%
! CATTGTTCGACAATTTTGAA+TGG + chr4_1:43066342-43066361 Msa0548790:CDS 30.0%
GCCATTCTTATAATCAACAA+AGG - chr4_1:43066399-43066418 None:intergenic 30.0%
! GCTTATGTTTCTAATGAGAA+AGG + chr4_1:43066481-43066500 Msa0548790:CDS 30.0%
TGGTAGAACACCAAGTATAT+GGG + chr4_1:43064180-43064199 Msa0548790:CDS 35.0%
ACATTCACTCATAGATATCC+TGG + chr4_1:43064205-43064224 Msa0548790:CDS 35.0%
TTGACATGCAGAAAAGATCA+AGG + chr4_1:43064318-43064337 Msa0548790:intron 35.0%
! CATACAGATTTTCCATATCC+TGG + chr4_1:43064549-43064568 Msa0548790:CDS 35.0%
CAATATTCTAGACCAGGATA+TGG - chr4_1:43064564-43064583 None:intergenic 35.0%
CAATGGAAAAGAGTCACTAA+TGG - chr4_1:43064891-43064910 None:intergenic 35.0%
! CATTAGTGACTCTTTTCCAT+TGG + chr4_1:43064889-43064908 Msa0548790:CDS 35.0%
! ACTTTAGAAGAAGAGTATGG+TGG + chr4_1:43064924-43064943 Msa0548790:CDS 35.0%
TGGATACTCACACTATAAGA+GGG - chr4_1:43064959-43064978 None:intergenic 35.0%
TTGGATACTCACACTATAAG+AGG - chr4_1:43064960-43064979 None:intergenic 35.0%
! TTGGTGATAGAGTCAAGTAT+TGG + chr4_1:43065105-43065124 Msa0548790:CDS 35.0%
TGGTGATAGAGTCAAGTATT+GGG + chr4_1:43065106-43065125 Msa0548790:CDS 35.0%
TGGTTGAATCCAAATTGTAC+CGG + chr4_1:43065206-43065225 Msa0548790:CDS 35.0%
! TGGTAATGCGTAACCAAATA+GGG - chr4_1:43065251-43065270 None:intergenic 35.0%
!! TTGGTAATGCGTAACCAAAT+AGG - chr4_1:43065252-43065271 None:intergenic 35.0%
! AAATCTCAAAAGGGCGTAAT+AGG + chr4_1:43065320-43065339 Msa0548790:CDS 35.0%
AAGATACCAATTCGCTACTA+AGG - chr4_1:43065351-43065370 None:intergenic 35.0%
TTTATGGATCCACTAACATC+AGG + chr4_1:43065534-43065553 Msa0548790:CDS 35.0%
TAAGTAACTAGGTCTAGCAT+TGG - chr4_1:43065706-43065725 None:intergenic 35.0%
CAATTCATCGCGAATAGAAA+AGG - chr4_1:43065830-43065849 None:intergenic 35.0%
GAAGCAATCTTGATACCAAT+AGG - chr4_1:43065873-43065892 None:intergenic 35.0%
TGGATAAACGTACAACCATT+CGG - chr4_1:43065895-43065914 None:intergenic 35.0%
AAAAGATCACGAATTCCTCT+TGG - chr4_1:43065915-43065934 None:intergenic 35.0%
CGATTCTACATTATCAGTTG+AGG + chr4_1:43066116-43066135 Msa0548790:CDS 35.0%
TTTATCTTCGATCTGCCATT+AGG + chr4_1:43066187-43066206 Msa0548790:CDS 35.0%
! GAAGATGAAGTGTTACCTAA+TGG - chr4_1:43066205-43066224 None:intergenic 35.0%
! GACAATTTTGAATGGTCATC+CGG + chr4_1:43066350-43066369 Msa0548790:CDS 35.0%
AATCGGAATAGTTTCCCTCA+AGG + chr4_1:43063975-43063994 Msa0548790:CDS 40.0%
! TTCCCTCAAGGCTTTATCTT+TGG + chr4_1:43063987-43064006 Msa0548790:CDS 40.0%
! TCCCTCAAGGCTTTATCTTT+GGG + chr4_1:43063988-43064007 Msa0548790:CDS 40.0%
GTGGTAGAACACCAAGTATA+TGG + chr4_1:43064179-43064198 Msa0548790:CDS 40.0%
GTGAATGTGTCCCATATACT+TGG - chr4_1:43064193-43064212 None:intergenic 40.0%
CATGCAGAAAAGATCAAGGA+TGG + chr4_1:43064322-43064341 Msa0548790:intron 40.0%
AAGATCAAGGATGGAAGCAA+TGG + chr4_1:43064331-43064350 Msa0548790:CDS 40.0%
ACTTGGCAATATTCTAGACC+AGG - chr4_1:43064570-43064589 None:intergenic 40.0%
CACTAAGCTTTCCATCTGTT+TGG - chr4_1:43064702-43064721 None:intergenic 40.0%
CAAACAGATGGAAAGCTTAG+TGG + chr4_1:43064700-43064719 Msa0548790:intron 40.0%
ATCAACGAGCTACTAGCTAA+TGG + chr4_1:43064763-43064782 Msa0548790:CDS 40.0%
! CTATGCGGAACTTTGTTTCA+AGG + chr4_1:43065079-43065098 Msa0548790:CDS 40.0%
AGCCAAAATGGCTATGCAAA+TGG + chr4_1:43065155-43065174 Msa0548790:CDS 40.0%
GCCAAAATGGCTATGCAAAT+GGG + chr4_1:43065156-43065175 Msa0548790:CDS 40.0%
TTGAATCCAAATTGTACCGG+AGG + chr4_1:43065209-43065228 Msa0548790:CDS 40.0%
CTTGTACACATCAACAACAG+CGG - chr4_1:43065288-43065307 None:intergenic 40.0%
GCATAACCTTAGTAGCGAAT+TGG + chr4_1:43065342-43065361 Msa0548790:CDS 40.0%
! TCGGATTTGGAATTTGAGAG+TGG - chr4_1:43065374-43065393 None:intergenic 40.0%
!!! TCTTTCTGCTGCTTTTTGGT+CGG - chr4_1:43065393-43065412 None:intergenic 40.0%
!!! TTGCTCTTTCTGCTGCTTTT+TGG - chr4_1:43065397-43065416 None:intergenic 40.0%
GGATAATCTCCTGATGTTAG+TGG - chr4_1:43065546-43065565 None:intergenic 40.0%
!! GGTCTAGCATTGGTTAACAA+TGG - chr4_1:43065696-43065715 None:intergenic 40.0%
TTTGGTCAATCCAGCATGTA+AGG + chr4_1:43065734-43065753 Msa0548790:intron 40.0%
GTATCAAGATTGCTTCCGAA+TGG + chr4_1:43065877-43065896 Msa0548790:CDS 40.0%
TGGTTGTACGTTTATCCAAG+AGG + chr4_1:43065897-43065916 Msa0548790:CDS 40.0%
ATCAGTTGAGGAATCACTCT+TGG + chr4_1:43066128-43066147 Msa0548790:CDS 40.0%
TCCAAATCTGACGCTATAAC+CGG - chr4_1:43066372-43066391 None:intergenic 40.0%
CCCCAAAGATAAAGCCTTGA+GGG - chr4_1:43063992-43064011 None:intergenic 45.0%
! CCCTCAAGGCTTTATCTTTG+GGG + chr4_1:43063989-43064008 Msa0548790:CDS 45.0%
! TTTGAAGGTGCAGCAACAGA+AGG + chr4_1:43064157-43064176 Msa0548790:CDS 45.0%
ACAGATGGAAAGCTTAGTGG+TGG + chr4_1:43064703-43064722 Msa0548790:intron 45.0%
! AGTGGTGGTGTCAATCAAGA+AGG + chr4_1:43064718-43064737 Msa0548790:CDS 45.0%
AAGTTTGAGGGAGATCCCAA+TGG - chr4_1:43064908-43064927 None:intergenic 45.0%
! GGGTTACTTTGAATGAGCCA+TGG + chr4_1:43065126-43065145 Msa0548790:CDS 45.0%
! GCCCATTTGCATAGCCATTT+TGG - chr4_1:43065160-43065179 None:intergenic 45.0%
GAATCACCTCCGGTACAATT+TGG - chr4_1:43065218-43065237 None:intergenic 45.0%
!!! TGCTGCTTTTTGGTCGGATT+TGG - chr4_1:43065387-43065406 None:intergenic 45.0%
GGTTAACAATGGTGCATCAG+AGG - chr4_1:43065685-43065704 None:intergenic 45.0%
!! TGGATTGGTTCCTTACATGC+TGG - chr4_1:43065747-43065766 None:intergenic 45.0%
TGAATTGCAGTTGAGCGCAA+CGG + chr4_1:43065843-43065862 Msa0548790:intron 45.0%
! AGGGAAGGTGTGAATGTCAA+GGG + chr4_1:43066305-43066324 Msa0548790:intron 45.0%
TCCGGTTATAGCGTCAGATT+TGG + chr4_1:43066368-43066387 Msa0548790:CDS 45.0%
ACCAGAAGTTGTCTGCTTTG+TGG + chr4_1:43066429-43066448 Msa0548790:CDS 45.0%
ACCACAAAGCAGACAACTTC+TGG - chr4_1:43066433-43066452 None:intergenic 45.0%
!!! ATAAATTTGAATTAAATTTT+TGG - chr4_1:43065504-43065523 None:intergenic 5.0%
GCCCCAAAGATAAAGCCTTG+AGG - chr4_1:43063993-43064012 None:intergenic 50.0%
!! CAAGGCTTTATCTTTGGGGC+TGG + chr4_1:43063993-43064012 Msa0548790:CDS 50.0%
!!! CCATTTTGGCTGTAGCTCCA+TGG - chr4_1:43065146-43065165 None:intergenic 50.0%
CCATGGAGCTACAGCCAAAA+TGG + chr4_1:43065143-43065162 Msa0548790:CDS 50.0%
TGGCTATGCAAATGGGCGAA+TGG + chr4_1:43065163-43065182 Msa0548790:CDS 50.0%
AACCAACTAGAGCAACGACC+CGG - chr4_1:43065191-43065210 None:intergenic 50.0%
TTCTGCGATCGAGCCCTATT+TGG + chr4_1:43065235-43065254 Msa0548790:CDS 50.0%
! ACGAGGGCTCTCATGCTTTT+AGG - chr4_1:43065567-43065586 None:intergenic 50.0%
! AAAAGCATGAGAGCCCTCGT+TGG + chr4_1:43065567-43065586 Msa0548790:CDS 50.0%
TGGTAACCTAGCACCAACGA+GGG - chr4_1:43065583-43065602 None:intergenic 50.0%
! TTGGTAACCTAGCACCAACG+AGG - chr4_1:43065584-43065603 None:intergenic 50.0%
GAATTGCAGTTGAGCGCAAC+GGG + chr4_1:43065844-43065863 Msa0548790:intron 50.0%
! CAGGGAAGGTGTGAATGTCA+AGG + chr4_1:43066304-43066323 Msa0548790:intron 50.0%
! GGCTGGTTCATCTTCCTACC+AGG + chr4_1:43064010-43064029 Msa0548790:CDS 55.0%
! GAAGGTGCAGCAACAGAAGG+TGG + chr4_1:43064160-43064179 Msa0548790:CDS 55.0%
TGCAAATGGGCGAATGGCAC+CGG + chr4_1:43065169-43065188 Msa0548790:CDS 55.0%
CTCGATCGCAGAATCACCTC+CGG - chr4_1:43065228-43065247 None:intergenic 55.0%
CAGCGGCATGTGCAAGAAGT+TGG - chr4_1:43065271-43065290 None:intergenic 55.0%
GAGCGCAACGGGAAACCTAT+TGG + chr4_1:43065855-43065874 Msa0548790:CDS 55.0%
GCAAATGGGCGAATGGCACC+GGG + chr4_1:43065170-43065189 Msa0548790:CDS 60.0%
CACCGGGTCGTTGCTCTAGT+TGG + chr4_1:43065186-43065205 Msa0548790:CDS 60.0%
! TGAGAGCCCTCGTTGGTGCT+AGG + chr4_1:43065574-43065593 Msa0548790:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 43063858 43066523 43063858 ID=Msa0548790;Name=Msa0548790
chr4_1 mRNA 43063858 43066523 43063858 ID=Msa0548790-mRNA-1;Parent=Msa0548790;Name=Msa0548790-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|11|0|531
chr4_1 exon 43063858 43064031 43063858 ID=Msa0548790-mRNA-1:exon:11135;Parent=Msa0548790-mRNA-1
chr4_1 exon 43064157 43064226 43064157 ID=Msa0548790-mRNA-1:exon:11136;Parent=Msa0548790-mRNA-1
chr4_1 exon 43064329 43064387 43064329 ID=Msa0548790-mRNA-1:exon:11137;Parent=Msa0548790-mRNA-1
chr4_1 exon 43064512 43064587 43064512 ID=Msa0548790-mRNA-1:exon:11138;Parent=Msa0548790-mRNA-1
chr4_1 exon 43064707 43064784 43064707 ID=Msa0548790-mRNA-1:exon:11139;Parent=Msa0548790-mRNA-1
chr4_1 exon 43064880 43064967 43064880 ID=Msa0548790-mRNA-1:exon:11140;Parent=Msa0548790-mRNA-1
chr4_1 exon 43065064 43065435 43065064 ID=Msa0548790-mRNA-1:exon:11141;Parent=Msa0548790-mRNA-1
chr4_1 exon 43065533 43065750 43065533 ID=Msa0548790-mRNA-1:exon:11142;Parent=Msa0548790-mRNA-1
chr4_1 exon 43065853 43065987 43065853 ID=Msa0548790-mRNA-1:exon:11143;Parent=Msa0548790-mRNA-1
chr4_1 exon 43066100 43066208 43066100 ID=Msa0548790-mRNA-1:exon:11144;Parent=Msa0548790-mRNA-1
chr4_1 exon 43066307 43066523 43066307 ID=Msa0548790-mRNA-1:exon:11145;Parent=Msa0548790-mRNA-1
chr4_1 CDS 43063858 43064031 43063858 ID=Msa0548790-mRNA-1:cds;Parent=Msa0548790-mRNA-1
chr4_1 CDS 43064157 43064226 43064157 ID=Msa0548790-mRNA-1:cds;Parent=Msa0548790-mRNA-1
chr4_1 CDS 43064329 43064387 43064329 ID=Msa0548790-mRNA-1:cds;Parent=Msa0548790-mRNA-1
chr4_1 CDS 43064512 43064587 43064512 ID=Msa0548790-mRNA-1:cds;Parent=Msa0548790-mRNA-1
chr4_1 CDS 43064707 43064784 43064707 ID=Msa0548790-mRNA-1:cds;Parent=Msa0548790-mRNA-1
chr4_1 CDS 43064880 43064967 43064880 ID=Msa0548790-mRNA-1:cds;Parent=Msa0548790-mRNA-1
chr4_1 CDS 43065064 43065435 43065064 ID=Msa0548790-mRNA-1:cds;Parent=Msa0548790-mRNA-1
chr4_1 CDS 43065533 43065750 43065533 ID=Msa0548790-mRNA-1:cds;Parent=Msa0548790-mRNA-1
chr4_1 CDS 43065853 43065987 43065853 ID=Msa0548790-mRNA-1:cds;Parent=Msa0548790-mRNA-1
chr4_1 CDS 43066100 43066208 43066100 ID=Msa0548790-mRNA-1:cds;Parent=Msa0548790-mRNA-1
chr4_1 CDS 43066307 43066523 43066307 ID=Msa0548790-mRNA-1:cds;Parent=Msa0548790-mRNA-1
Gene Sequence

>Msa0548790

ATGGCATTCAATTACCTTCTCTTCTTTATTACTTTTGTTATTTTTCTTAGCAAATCAAATATTGTGAATTGCACAGAAAGTGTTGAAGTTGAACCTATTCTTGACATTGCTTCATTGAATCGGAATAGTTTCCCTCAAGGCTTTATCTTTGGGGCTGGTTCATCTTCCTACCAGTTTGAAGGTGCAGCAACAGAAGGTGGTAGAACACCAAGTATATGGGACACATTCACTCATAGATATCCTGAAAAGATCAAGGATGGAAGCAATGGAGATGTAGCCATTGACACATATCATCAATACAAGGAAGATGTTAAGATCATGAAAGATATGAACTTAGATTCATACAGATTTTCCATATCCTGGTCTAGAATATTGCCAAATGGAAAGCTTAGTGGTGGTGTCAATCAAGAAGGAATTAACTATTACAACAATCTCATCAACGAGCTACTAGCTAATGGTATACAACCATTAGTGACTCTTTTCCATTGGGATCTCCCTCAAACTTTAGAAGAAGAGTATGGTGGCTTCTTAAGCCCTCTTATAGTAAAAGATTTTCAAGACTATGCGGAACTTTGTTTCAAGGAATTTGGTGATAGAGTCAAGTATTGGGTTACTTTGAATGAGCCATGGAGCTACAGCCAAAATGGCTATGCAAATGGGCGAATGGCACCGGGTCGTTGCTCTAGTTGGTTGAATCCAAATTGTACCGGAGGTGATTCTGCGATCGAGCCCTATTTGGTTACGCATTACCAACTTCTTGCACATGCCGCTGTTGTTGATGTGTACAAGAAAAAGTACAAGAAATCTCAAAAGGGCGTAATAGGCATAACCTTAGTAGCGAATTGGTATCTTCCACTCTCAAATTCCAAATCCGACCAAAAAGCAGCAGAAAGAGCAATTGATTTTATGTATGGATGGTTTATGGATCCACTAACATCAGGAGATTATCCTAAAAGCATGAGAGCCCTCGTTGGTGCTAGGTTACCAAAATTCAATACAAAGCAAACTAAACTACTCATTGGTTCATTTGATTTTATTGGTCTAAACTATTACTCTTCAACTTATGCCTCTGATGCACCATTGTTAACCAATGCTAGACCTAGTTACTTAACAGATTCTTTGGTCAATCCAGCATTTGAGCGCAACGGGAAACCTATTGGTATCAAGATTGCTTCCGAATGGTTGTACGTTTATCCAAGAGGAATTCGTGATCTTTTGTTATACACCAAAGAAAAGTACAATAATCCTTCTATTTACATCACAGAAAATGGTATAAATGAATACGACGATTCTACATTATCAGTTGAGGAATCACTCTTGGATACTTTTCGAATTGATTACCATTACCGTCATCTATTTTATCTTCGATCTGCCATTAGGGAAGGTGTGAATGTCAAGGGTTATTATGTATGGTCATTGTTCGACAATTTTGAATGGTCATCCGGTTATAGCGTCAGATTTGGAATGACCTTTGTTGATTATAAGAATGGCTTGAAAAGATACCAGAAGTTGTCTGCTTTGTGGTTTAAGAATTTTCTCAAAAAAGAAACTAAGCTTATGTTTCTAATGAGAAAGGTTATGAGATTCATTCATTAA
Protein sequence

>Msa0548790

MAFNYLLFFITFVIFLSKSNIVNCTESVEVEPILDIASLNRNSFPQGFIFGAGSSSYQFEGAATEGGRTPSIWDTFTHRYPEKIKDGSNGDVAIDTYHQYKEDVKIMKDMNLDSYRFSISWSRILPNGKLSGGVNQEGINYYNNLINELLANGIQPLVTLFHWDLPQTLEEEYGGFLSPLIVKDFQDYAELCFKEFGDRVKYWVTLNEPWSYSQNGYANGRMAPGRCSSWLNPNCTGGDSAIEPYLVTHYQLLAHAAVVDVYKKKYKKSQKGVIGITLVANWYLPLSNSKSDQKAAERAIDFMYGWFMDPLTSGDYPKSMRALVGARLPKFNTKQTKLLIGSFDFIGLNYYSSTYASDAPLLTNARPSYLTDSLVNPAFERNGKPIGIKIASEWLYVYPRGIRDLLLYTKEKYNNPSIYITENGINEYDDSTLSVEESLLDTFRIDYHYRHLFYLRSAIREGVNVKGYYVWSLFDNFEWSSGYSVRFGMTFVDYKNGLKRYQKLSALWFKNFLKKETKLMFLMRKVMRFIH*