AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0401500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0401500 MtrunA17_Chr3g0090331 86.922 497 41 2 1 473 1 497 0.0 894
Msa0401500 MtrunA17_Chr4g0020241 67.373 472 127 5 19 466 19 487 0.0 657
Msa0401500 MtrunA17_Chr3g0118851 54.481 424 160 8 66 462 69 486 6.41e-152 441
Msa0401500 MtrunA17_Chr3g0118881 50.913 438 174 9 66 468 69 500 1.21e-146 428
Msa0401500 MtrunA17_Chr3g0118841 52.448 429 172 8 66 468 70 492 1.71e-146 427
Msa0401500 MtrunA17_Chr3g0118831 54.612 412 165 9 61 466 64 459 2.44e-143 418
Msa0401500 MtrunA17_Chr1g0153881 47.059 493 216 13 6 466 18 497 4.34e-139 409
Msa0401500 MtrunA17_Chr3g0118891 50.215 466 198 13 8 462 11 453 2.79e-138 405
Msa0401500 MtrunA17_Chr7g0219051 47.500 440 188 8 67 466 28 464 1.87e-137 404
Msa0401500 MtrunA17_Chr3g0118861 51.551 419 177 9 63 468 64 469 2.59e-136 401
Msa0401500 MtrunA17_Chr1g0199991 46.512 430 196 8 70 466 28 456 4.41e-135 397
Msa0401500 MtrunA17_Chr4g0038311 45.872 436 195 7 70 466 30 463 1.36e-131 389
Msa0401500 MtrunA17_Chr1g0199971 45.116 430 202 8 70 466 28 456 1.27e-128 380
Msa0401500 MtrunA17_Chr2g0309511 44.111 433 208 10 70 469 34 465 5.33e-126 374
Msa0401500 MtrunA17_Chr2g0309521 44.009 434 209 10 69 469 33 465 1.01e-125 374
Msa0401500 MtrunA17_Chr1g0153941 42.157 510 230 12 13 466 12 512 2.60e-124 372
Msa0401500 MtrunA17_Chr2g0309541 42.794 451 217 12 56 471 24 468 7.86e-122 364
Msa0401500 MtrunA17_Chr2g0318911 42.241 464 225 11 42 465 2 462 1.10e-120 361
Msa0401500 MtrunA17_Chr4g0047861 44.545 440 198 10 73 469 52 488 1.02e-118 356
Msa0401500 MtrunA17_Chr4g0068841 43.177 447 203 11 71 468 35 479 3.82e-112 339
Msa0401500 MtrunA17_Chr2g0281621 40.919 457 228 7 53 469 14 468 6.67e-111 336
Msa0401500 MtrunA17_Chr5g0431301 42.377 446 213 9 67 470 22 465 3.01e-110 334
Msa0401500 MtrunA17_Chr3g0126031 41.176 442 220 8 67 470 21 460 1.65e-107 327
Msa0401500 MtrunA17_Chr3g0126051 40.950 442 223 8 67 470 26 467 2.81e-107 327
Msa0401500 MtrunA17_Chr7g0221551 41.379 435 208 10 73 466 29 457 3.15e-103 316
Msa0401500 MtrunA17_Chr3g0131731 41.324 438 208 12 73 466 29 461 3.31e-102 313
Msa0401500 MtrunA17_Chr3g0094811 40.724 442 210 10 67 466 23 454 2.29e-101 311
Msa0401500 MtrunA17_Chr2g0304931 40.091 439 217 10 69 468 33 464 1.52e-97 301
Msa0401500 MtrunA17_Chr8g0385871 39.954 438 212 12 73 466 32 462 1.79e-95 296
Msa0401500 MtrunA17_Chr4g0068861 43.094 362 181 8 71 409 81 440 1.62e-93 291
Msa0401500 MtrunA17_Chr2g0281641 42.298 383 177 8 126 466 7 387 1.61e-92 286
Msa0401500 MtrunA17_Chr1g0153931 53.101 258 109 5 6 254 3 257 1.52e-84 261
Msa0401500 MtrunA17_Chr8g0338461 31.144 472 245 9 71 465 27 495 1.67e-70 232
Msa0401500 MtrunA17_Chr1g0165811 46.502 243 120 5 71 311 27 261 1.51e-66 214
Msa0401500 MtrunA17_Chr7g0234051 31.290 473 244 10 71 465 26 495 2.33e-65 218
Msa0401500 MtrunA17_Chr7g0249431 34.461 473 220 18 75 462 28 495 6.35e-64 214
Msa0401500 MtrunA17_Chr1g0204191 31.938 454 226 13 57 466 76 490 3.29e-63 213
Msa0401500 MtrunA17_Chr4g0028271 29.524 420 232 14 86 462 95 493 4.53e-44 162
Msa0401500 MtrunA17_Chr7g0234041 43.192 213 107 4 75 281 27 231 6.24e-44 160
Msa0401500 MtrunA17_Chr2g0285371 28.345 441 261 15 75 465 34 469 4.01e-43 158
Msa0401500 MtrunA17_Chr1g0171411 30.935 417 233 17 86 463 81 481 8.62e-43 158
Msa0401500 MtrunA17_Chr2g0327401 28.878 419 239 16 85 462 97 497 2.18e-42 157
Msa0401500 MtrunA17_Chr4g0028261 29.787 423 241 18 80 462 109 515 7.20e-41 153
Msa0401500 MtrunA17_Chr4g0028281 28.412 447 268 13 53 462 60 491 2.11e-39 149
Msa0401500 MtrunA17_Chr1g0199171 29.060 468 256 20 51 463 41 487 1.17e-38 147
Msa0401500 MtrunA17_Chr4g0009701 26.471 442 265 16 74 465 39 470 9.49e-38 144
Msa0401500 MtrunA17_Chr2g0285351 26.364 440 272 14 75 465 33 469 1.24e-37 143
Msa0401500 MtrunA17_Chr1g0153921 38.117 223 107 6 268 466 1 216 2.24e-37 136
Msa0401500 MtrunA17_Chr2g0327381 26.407 462 240 14 85 462 91 536 1.11e-36 142
Msa0401500 MtrunA17_Chr4g0009681 26.879 439 267 13 74 465 36 467 1.47e-36 140
Msa0401500 MtrunA17_Chr4g0028241 27.737 411 245 13 91 462 92 489 5.92e-36 139
Msa0401500 MtrunA17_Chr2g0285381 27.982 436 262 17 75 465 37 465 1.74e-35 137
Msa0401500 MtrunA17_Chr4g0009711 26.077 441 272 14 72 465 37 470 2.86e-35 137
Msa0401500 MtrunA17_Chr5g0447441 28.218 404 233 15 91 456 44 428 1.15e-34 135
Msa0401500 MtrunA17_Chr4g0009661 25.624 441 270 14 74 465 39 470 1.62e-33 132
Msa0401500 MtrunA17_Chr3g0133011 27.293 447 265 15 75 465 54 496 2.16e-33 132
Msa0401500 MtrunA17_Chr4g0009641 25.968 439 247 15 74 465 39 446 1.19e-32 129
Msa0401500 MtrunA17_Chr2g0327371 27.816 435 221 18 102 462 97 512 2.49e-32 129
Msa0401500 MtrunA17_Chr4g0009671 25.404 433 266 15 81 465 12 435 1.03e-30 123
Msa0401500 MtrunA17_Chr4g0044051 27.751 418 235 16 82 456 39 432 1.24e-30 123
Msa0401500 MtrunA17_Chr4g0009651 31.696 224 142 7 74 290 39 258 2.81e-28 117
Msa0401500 MtrunA17_Chr3g0093971 23.898 431 277 15 75 461 27 450 2.87e-26 110
Msa0401500 MtrunA17_Chr2g0279371 34.737 190 99 5 57 241 14 183 1.15e-23 98.2
Msa0401500 MtrunA17_Chr7g0229631 48.454 97 47 2 72 168 31 124 3.44e-23 95.5
Msa0401500 MtrunA17_Chr7g0229611 50.000 76 37 1 74 149 25 99 5.20e-19 82.0
Msa0401500 MtrunA17_Chr4g0009721 22.782 417 265 15 74 465 35 419 1.91e-18 87.4
Msa0401500 MtrunA17_Chr7g0229621 47.436 78 40 1 72 149 23 99 1.16e-17 78.6
Msa0401500 MtrunA17_Chr4g0027731 22.449 441 258 13 87 461 32 454 1.52e-15 78.6
Msa0401500 MtrunA17_Chr1g0165821 30.519 154 75 4 342 466 28 178 2.22e-13 68.6
Msa0401500 MtrunA17_Chr2g0281631 50.000 56 28 0 71 126 42 97 9.96e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0401500 AT3G63470.1 57.054 482 171 7 21 470 24 501 0.0 561
Msa0401500 AT3G52020.1 45.161 496 227 14 12 468 11 500 3.38e-143 420
Msa0401500 AT3G52000.1 45.783 498 223 13 1 468 1 481 2.34e-140 412
Msa0401500 AT4G30610.1 49.543 438 177 9 70 466 28 462 8.07e-140 410
Msa0401500 AT5G08260.1 46.756 447 193 6 65 466 30 476 1.46e-135 399
Msa0401500 AT3G07990.1 47.209 430 193 8 72 468 31 459 5.34e-134 395
Msa0401500 AT3G02110.1 44.912 452 197 11 63 466 24 471 1.49e-133 394
Msa0401500 AT2G35780.1 46.882 433 190 11 70 467 25 452 3.38e-133 392
Msa0401500 AT3G52010.1 43.713 501 234 12 1 468 1 486 4.08e-133 394
Msa0401500 AT2G05850.1 43.452 504 231 13 1 468 1 486 1.92e-132 392
Msa0401500 AT5G23210.1 45.796 452 187 8 70 466 47 495 1.04e-131 390
Msa0401500 AT4G30810.1 44.419 430 204 7 70 465 33 461 8.06e-131 387
Msa0401500 AT2G24010.1 46.404 431 192 9 70 466 26 451 9.06e-131 386
Msa0401500 AT2G24000.1 45.205 438 195 8 70 465 26 460 8.97e-128 379
Msa0401500 AT2G35770.1 46.380 442 204 7 57 466 18 458 2.31e-125 373
Msa0401500 AT2G24010.2 44.619 446 193 10 70 466 26 466 2.65e-125 373
Msa0401500 AT1G61130.1 43.237 451 215 9 58 469 15 463 1.39e-121 363
Msa0401500 AT4G15100.1 44.144 444 197 11 70 465 40 480 4.66e-119 358
Msa0401500 AT5G23210.3 48.378 370 160 5 70 409 47 415 5.27e-119 357
Msa0401500 AT1G11080.1 43.750 448 201 9 71 469 47 492 1.12e-118 357
Msa0401500 AT1G11080.2 43.750 448 201 9 71 469 47 492 1.78e-118 356
Msa0401500 AT2G24010.3 42.275 466 190 11 75 466 2 462 3.63e-118 355
Msa0401500 AT2G12480.3 42.529 435 214 5 67 466 24 457 7.03e-111 336
Msa0401500 AT5G42240.1 42.630 441 209 9 68 466 26 464 5.52e-109 331
Msa0401500 AT2G24010.4 45.961 359 165 7 75 408 2 356 2.36e-107 323
Msa0401500 AT1G43780.1 40.950 442 218 8 67 466 30 470 2.65e-107 327
Msa0401500 AT5G23210.5 44.612 399 163 8 123 466 5 400 5.51e-107 324
Msa0401500 AT5G23210.2 44.557 395 161 8 127 466 8 399 7.48e-106 321
Msa0401500 AT2G12480.4 41.628 430 201 6 67 466 24 433 2.76e-105 321
Msa0401500 AT3G17180.1 41.892 444 209 11 70 466 34 475 3.83e-105 322
Msa0401500 AT2G12480.1 41.492 429 201 6 67 466 24 431 8.16e-105 320
Msa0401500 AT2G12480.2 41.628 430 200 7 67 466 24 432 1.27e-104 319
Msa0401500 AT2G33530.1 40.455 440 215 9 69 466 28 462 5.14e-104 318
Msa0401500 AT5G42230.1 41.723 441 213 8 68 466 22 460 6.25e-104 318
Msa0401500 AT5G42230.2 41.723 441 213 8 68 466 22 460 6.25e-104 318
Msa0401500 AT1G28110.1 41.244 434 210 9 73 466 30 458 1.14e-103 317
Msa0401500 AT1G28110.2 41.244 434 210 9 73 466 30 458 1.14e-103 317
Msa0401500 AT5G23210.4 47.284 313 134 5 127 409 8 319 5.28e-93 286
Msa0401500 AT3G17180.2 42.700 363 183 8 70 409 34 394 8.45e-92 286
Msa0401500 AT3G56540.1 56.223 233 96 2 1 228 1 232 1.11e-86 266
Msa0401500 AT4G12910.1 33.191 470 236 10 71 465 31 497 4.33e-73 239
Msa0401500 AT3G25420.1 33.118 465 231 13 75 462 30 491 1.27e-67 224
Msa0401500 AT4G12910.2 33.846 390 204 8 71 409 31 417 2.51e-62 209
Msa0401500 AT2G22990.1 28.806 427 252 12 75 465 23 433 1.04e-47 170
Msa0401500 AT2G24000.2 36.525 282 135 7 225 465 119 397 1.23e-46 167
Msa0401500 AT2G24000.2 58.696 92 37 1 70 160 26 117 4.07e-31 124
Msa0401500 AT3G45010.1 30.024 423 240 16 80 462 92 498 7.85e-46 167
Msa0401500 AT2G23000.1 29.302 430 248 15 75 465 25 437 1.33e-45 165
Msa0401500 AT2G23000.2 29.302 430 248 15 75 465 25 437 1.33e-45 165
Msa0401500 AT2G22970.1 29.604 429 244 15 75 465 25 433 3.05e-45 164
Msa0401500 AT2G22920.2 30.140 428 239 16 75 462 25 432 9.41e-45 162
Msa0401500 AT1G73290.1 29.040 427 247 14 75 465 32 438 6.16e-44 160
Msa0401500 AT2G22990.3 28.846 416 245 11 75 454 23 423 2.17e-43 159
Msa0401500 AT2G22990.4 29.000 400 233 11 75 438 23 407 5.01e-43 157
Msa0401500 AT1G73270.2 27.804 428 253 13 75 465 33 441 6.34e-43 157
Msa0401500 AT1G73270.1 27.804 428 253 13 75 465 33 441 8.09e-43 157
Msa0401500 AT1G73300.1 28.406 433 244 16 75 465 33 441 2.89e-42 155
Msa0401500 AT1G73300.2 28.406 433 244 16 75 465 33 441 2.89e-42 155
Msa0401500 AT1G33540.1 26.667 450 277 14 65 465 19 464 3.82e-42 156
Msa0401500 AT3G10450.1 26.869 428 257 12 75 465 29 437 7.20e-42 154
Msa0401500 AT2G22990.5 27.869 427 247 13 75 465 23 424 8.92e-42 154
Msa0401500 AT2G22970.3 29.975 407 228 14 75 443 25 412 1.46e-41 154
Msa0401500 AT1G33540.2 26.540 422 258 13 92 465 4 421 8.56e-41 151
Msa0401500 AT3G10450.2 26.829 410 245 11 92 465 4 394 9.14e-41 150
Msa0401500 AT5G36180.1 27.674 430 251 15 75 465 33 441 9.58e-41 152
Msa0401500 AT2G22920.1 32.075 318 184 10 75 378 25 324 1.09e-40 150
Msa0401500 AT1G73280.1 27.714 433 247 14 75 465 33 441 1.13e-40 151
Msa0401500 AT5G22980.1 29.216 421 240 16 82 462 91 493 1.27e-40 152
Msa0401500 AT2G22970.4 29.703 404 227 14 75 440 25 409 1.38e-40 150
Msa0401500 AT2G23010.2 27.273 440 278 13 58 465 8 437 1.45e-40 151
Msa0401500 AT2G23010.1 27.273 440 278 13 58 465 8 437 2.53e-40 150
Msa0401500 AT3G12203.1 28.352 455 257 14 51 465 12 437 3.29e-40 150
Msa0401500 AT2G22920.4 32.353 306 176 9 75 366 25 313 4.48e-40 147
Msa0401500 AT2G22980.1 27.700 426 252 14 75 465 26 430 5.38e-40 149
Msa0401500 AT3G12203.3 28.538 431 245 13 75 465 9 416 9.37e-40 148
Msa0401500 AT3G10410.1 30.260 423 233 20 80 460 90 492 4.20e-39 148
Msa0401500 AT3G12220.1 31.148 427 240 17 75 465 27 435 2.22e-38 145
Msa0401500 AT2G22970.2 32.353 306 175 10 75 366 25 312 2.27e-38 142
Msa0401500 AT3G12230.1 29.977 427 245 16 75 465 27 435 8.30e-38 143
Msa0401500 AT1G73290.2 31.298 262 172 5 75 330 32 291 9.46e-38 140
Msa0401500 AT1G73290.3 29.395 347 214 10 75 409 32 359 2.26e-37 141
Msa0401500 AT5G09640.1 26.432 454 256 16 75 465 27 465 4.10e-37 142
Msa0401500 AT3G12203.2 28.358 402 226 12 103 465 1 379 5.02e-37 140
Msa0401500 AT3G12220.2 31.051 409 229 16 92 465 15 405 7.37e-37 140
Msa0401500 AT3G12240.1 29.742 427 246 16 75 465 28 436 7.97e-37 140
Msa0401500 AT1G15000.1 29.064 406 258 10 82 465 29 426 1.10e-36 140
Msa0401500 AT2G22980.2 27.930 401 234 13 75 440 26 406 1.78e-36 139
Msa0401500 AT2G22980.4 27.970 404 236 13 75 443 26 409 2.15e-36 139
Msa0401500 AT1G73310.1 26.526 426 261 13 75 465 33 441 5.76e-36 138
Msa0401500 AT3G10450.4 26.551 403 241 11 75 440 29 413 7.06e-36 137
Msa0401500 AT3G10450.3 26.494 385 229 10 92 440 4 370 9.55e-35 134
Msa0401500 AT1G73280.2 30.935 278 182 6 57 326 15 290 1.53e-34 133
Msa0401500 AT2G22980.3 29.968 317 187 11 75 377 26 321 3.52e-33 129
Msa0401500 AT3G12220.3 37.089 213 126 6 75 281 27 237 2.27e-31 124
Msa0401500 AT1G73310.2 31.174 247 160 6 75 313 33 277 1.32e-30 123
Msa0401500 AT2G22990.2 27.327 333 197 9 163 465 2 319 2.57e-29 117
Msa0401500 AT2G22990.6 27.327 333 197 9 163 465 2 319 4.02e-29 117
Msa0401500 AT5G36180.5 26.149 348 204 11 151 465 12 339 7.56e-26 108
Msa0401500 AT5G36180.3 26.149 348 204 11 151 465 12 339 7.56e-26 108
Msa0401500 AT1G73280.4 25.356 351 203 10 151 465 12 339 4.79e-25 105
Msa0401500 AT5G22960.1 34.682 173 88 6 80 250 25 174 2.41e-23 97.4
Msa0401500 AT1G73280.3 24.926 337 194 10 165 465 1 314 7.62e-22 96.3
Msa0401500 AT5G36180.2 25.387 323 189 10 151 440 12 315 1.51e-20 92.8
Msa0401500 AT5G36180.4 28.099 242 145 8 151 382 12 234 2.76e-19 89.4
Msa0401500 AT2G22980.5 25.081 307 182 9 163 440 2 289 9.92e-19 87.0
Msa0401500 AT1G73310.3 29.697 165 113 2 151 313 12 175 1.40e-16 81.3
Msa0401500 AT2G27920.1 28.249 177 118 4 87 260 33 203 2.56e-15 78.6
Msa0401500 AT2G22920.3 26.103 272 149 11 228 465 3 256 7.78e-11 62.8

Find 107 sgRNAs with CRISPR-Local

Find 436 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAATCATGCATTTCTTAAA+TGG 0.183548 3_2:-27622435 Msa0401500:CDS
ATCTCCTAAATAATGGATTA+AGG 0.216846 3_2:-27623550 Msa0401500:CDS
AAACCCTTAATCCATTATTT+AGG 0.226803 3_2:+27623546 None:intergenic
TCATATAATCTTTGAGTAAT+AGG 0.237761 3_2:+27622402 None:intergenic
TATTTAGGAGATCATGTAAA+AGG 0.240154 3_2:+27623561 None:intergenic
AAACATTGCCTCTTCTTCTT+TGG 0.241096 3_2:-27630868 Msa0401500:CDS
CCTCTTCTTCTTTGGCTCAA+TGG 0.255465 3_2:-27630860 Msa0401500:CDS
TAAATAATGGATTAAGGGTT+TGG 0.276467 3_2:-27623544 Msa0401500:CDS
TTACATGATCTCCTAAATAA+TGG 0.284485 3_2:-27623557 Msa0401500:CDS
CTCTACTTTGTTTGCTTCCA+TGG 0.284619 3_2:+27631143 None:intergenic
TATCAACCTCAAAGGAATTA+TGG 0.285850 3_2:-27626618 Msa0401500:intron
TTTCAACCGGGTTGATGTTC+AGG 0.293969 3_2:-27623681 Msa0401500:CDS
TTCCACAAAGTAATAGTAAA+AGG 0.309727 3_2:+27630907 None:intergenic
TATTCTCTACCATAATAAAA+AGG 0.316186 3_2:-27626654 Msa0401500:CDS
TTGTTCCTTGAGTCCCCAGC+TGG 0.329304 3_2:-27626860 Msa0401500:CDS
AAATCTCTATTCTTATATTC+AGG 0.337407 3_2:+27626731 None:intergenic
AATAGAGATTTCTACATTGC+TGG 0.337904 3_2:-27626719 Msa0401500:CDS
TACTTTATTGTAAAGTTGTA+TGG 0.345819 3_2:-27623433 Msa0401500:intron
GAATCTTACCGAGACCTTCT+TGG 0.349259 3_2:+27624250 None:intergenic
TCTCATTATAACTCTCTTTG+TGG 0.359996 3_2:-27631173 Msa0401500:CDS
AATCTTACCGAGACCTTCTT+GGG 0.360461 3_2:+27624251 None:intergenic
AATAACTATTCATGGAACTA+TGG 0.364693 3_2:-27627199 Msa0401500:intron
GCAGTACTATCATTCCAAAC+TGG 0.365422 3_2:-27623610 Msa0401500:CDS
GAGCAAACCAAGTTCTTCAT+TGG 0.372961 3_2:-27631209 Msa0401500:CDS
TCTCCTAAATAATGGATTAA+GGG 0.381516 3_2:-27623549 Msa0401500:CDS
ATGTACAAGCATATTTCAAC+CGG 0.389738 3_2:-27623694 Msa0401500:CDS
AATGTGAAATTCTCTCAATA+TGG 0.394122 3_2:-27630965 Msa0401500:CDS
CACATACCATAATTCCTTTG+AGG 0.398233 3_2:+27626612 None:intergenic
ATTGTGTTAATTTGTTATGA+AGG 0.407568 3_2:+27631232 None:intergenic
GCTCTTGCTGGTTGATAGCT+TGG 0.415412 3_2:+27622465 None:intergenic
GACAAAATTGAGAAGCTACC+AGG 0.417850 3_2:-27630995 Msa0401500:CDS
TATTGAGAGAATTTCACATT+TGG 0.420138 3_2:+27630968 None:intergenic
ATTAGAGAGAGGGCTCTTGC+TGG 0.432630 3_2:+27622453 None:intergenic
TGTTGATATTATATGCTGTT+TGG 0.433083 3_2:+27624414 None:intergenic
CCCTTCCGTGTGAAGAGTAA+TGG 0.445262 3_2:-27627238 Msa0401500:CDS
CCTTCCGTGTGAAGAGTAAT+GGG 0.448180 3_2:-27627237 Msa0401500:CDS
AGCTGTTCTTCTATCTCCAT+TGG 0.449883 3_2:+27626796 None:intergenic
ACTGCACTCAGTAGTTTGAT+TGG 0.450007 3_2:+27624367 None:intergenic
ATTTAGGAGATCATGTAAAA+GGG 0.453835 3_2:+27623562 None:intergenic
AAAAGGGGAATGATTGTTGT+AGG 0.458938 3_2:+27623578 None:intergenic
GGATGCTCATCTCTTGCCTA+TGG 0.462686 3_2:-27627280 Msa0401500:CDS
AAAGAGAGTTATAATGAGAA+TGG 0.463293 3_2:+27631177 None:intergenic
GAATATTGTGTGCAAGTTGA+GGG 0.463337 3_2:+27626672 None:intergenic
TTTCATGTGAAACAGGTTGC+TGG 0.463493 3_2:-27622552 Msa0401500:intron
TATGAATATCCTACCCCAGC+TGG 0.466534 3_2:+27626845 None:intergenic
TCACGAAACTCGAGTATGAC+TGG 0.477651 3_2:-27623640 Msa0401500:CDS
AACTTCTTGCATTGCTCCAT+AGG 0.478248 3_2:+27627264 None:intergenic
CTCTTTGTGGCTGAAATCCA+TGG 0.486471 3_2:-27631160 Msa0401500:CDS
CAGTACTATCATTCCAAACT+GGG 0.497009 3_2:-27623609 Msa0401500:CDS
AATCTTTGAGTAATAGGAAG+AGG 0.499019 3_2:+27622408 None:intergenic
CCCATTACTCTTCACACGGA+AGG 0.500696 3_2:+27627237 None:intergenic
TGTTCCTTGAGTCCCCAGCT+GGG 0.502648 3_2:-27626859 Msa0401500:CDS
TGGCTATGCCGAAGTATACA+AGG 0.510829 3_2:-27622532 Msa0401500:CDS
AGGTTGTGATTAGTGCAGAC+TGG 0.512317 3_2:+27624284 None:intergenic
TTTCGTGACATTGGCATGGA+GGG 0.517346 3_2:+27623655 None:intergenic
CTTGAGTCCCCAGCTGGGGT+AGG 0.518621 3_2:-27626854 Msa0401500:CDS
TAGGCAAGAGATGAGCATCC+AGG 0.518987 3_2:+27627283 None:intergenic
GTTTGGAATGATAGTACTGC+AGG 0.522006 3_2:+27623613 None:intergenic
TATGGAGCAATGCAAGAAGT+TGG 0.522491 3_2:-27627262 Msa0401500:CDS
GTGAAATTCTCTCAATATGG+AGG 0.524656 3_2:-27630962 Msa0401500:CDS
TTTGCCACAGTGAGAGAAGC+AGG 0.525820 3_2:-27622498 Msa0401500:CDS
AGAAATGCATGATTAGAGAG+AGG 0.526076 3_2:+27622442 None:intergenic
ATGAATATCCTACCCCAGCT+GGG 0.526810 3_2:+27626846 None:intergenic
AATTTCACATTTGGTTGCCC+TGG 0.527499 3_2:+27630977 None:intergenic
AGATGAACCAATGAAGAACT+TGG 0.530035 3_2:+27631202 None:intergenic
ATTGCTGGAGAAAGCTATGC+TGG 0.531812 3_2:-27626704 Msa0401500:CDS
CTACCCCAGCTGGGGACTCA+AGG 0.535108 3_2:+27626855 None:intergenic
CTTCTTCTTTGGCTCAATGG+AGG 0.537092 3_2:-27630857 Msa0401500:intron
TAAACCTCCCTTGTATACTT+CGG 0.540226 3_2:+27622524 None:intergenic
AGAATATTGTGTGCAAGTTG+AGG 0.547975 3_2:+27626671 None:intergenic
CCATTACTCTTCACACGGAA+GGG 0.549561 3_2:+27627238 None:intergenic
TTTAGGAGATCATGTAAAAG+GGG 0.554157 3_2:+27623563 None:intergenic
GTTACAGTGGACAAAATAGC+TGG 0.555119 3_2:-27630935 Msa0401500:CDS
CCATTGAGCCAAAGAAGAAG+AGG 0.565040 3_2:+27630860 None:intergenic
GGTTGTGATTAGTGCAGACT+GGG 0.565721 3_2:+27624285 None:intergenic
GAATATTGTGCTTGATGCAA+TGG 0.567607 3_2:-27631047 Msa0401500:CDS
CGAGTTTCGTGACATTGGCA+TGG 0.569027 3_2:+27623651 None:intergenic
GCAATGGTTCATTCTCAAGA+TGG 0.570538 3_2:-27631031 Msa0401500:CDS
TAACCGTCCCAAGAAGGTCT+CGG 0.571130 3_2:-27624258 Msa0401500:intron
CCTTCTTGGGACGGTTAGTG+AGG 0.573681 3_2:+27624264 None:intergenic
CAACCGGGTTGATGTTCAGG+AGG 0.574894 3_2:-27623678 Msa0401500:CDS
ATACTCGAGTTTCGTGACAT+TGG 0.578017 3_2:+27623646 None:intergenic
GTTCCTTGAGTCCCCAGCTG+GGG 0.580944 3_2:-27626858 Msa0401500:CDS
TTACCGAGACCTTCTTGGGA+CGG 0.584125 3_2:+27624255 None:intergenic
ACAAAATTGAGAAGCTACCA+GGG 0.584817 3_2:-27630994 Msa0401500:CDS
CACGAAACTCGAGTATGACT+GGG 0.587080 3_2:-27623639 Msa0401500:CDS
GAAATGCATGATTAGAGAGA+GGG 0.590622 3_2:+27622443 None:intergenic
TGTACATAATCGTCACTGCA+TGG 0.591663 3_2:+27623710 None:intergenic
TCATCTGATTATGACACCAA+TGG 0.596555 3_2:-27626812 Msa0401500:CDS
AGGACAATTATCAACCTCAA+AGG 0.606041 3_2:-27626626 Msa0401500:CDS
CCTCACTAACCGTCCCAAGA+AGG 0.610012 3_2:-27624264 Msa0401500:CDS
GTTTCGTGACATTGGCATGG+AGG 0.612367 3_2:+27623654 None:intergenic
TGAAATTCTCTCAATATGGA+GGG 0.612482 3_2:-27630961 Msa0401500:CDS
GTACTATCATTCCAAACTGG+GGG 0.624512 3_2:-27623607 Msa0401500:CDS
CTAAGATTGACAGAATAACA+AGG 0.626776 3_2:+27623408 None:intergenic
GGGCCTCCTGAACATCAACC+CGG 0.632537 3_2:+27623675 None:intergenic
AATGATGACACAGATGAGCA+AGG 0.634580 3_2:-27624476 Msa0401500:CDS
TGTACAAGCATATTTCAACC+GGG 0.635868 3_2:-27623693 Msa0401500:CDS
TGAATATCCTACCCCAGCTG+GGG 0.656224 3_2:+27626847 None:intergenic
ATATGGAGGGTATGTTACAG+TGG 0.667375 3_2:-27630948 Msa0401500:CDS
TAAGATTGACAGAATAACAA+GGG 0.668021 3_2:+27623409 None:intergenic
GGCTATGCCGAAGTATACAA+GGG 0.668921 3_2:-27622531 Msa0401500:CDS
AGTACTATCATTCCAAACTG+GGG 0.684965 3_2:-27623608 Msa0401500:CDS
ATGTCCTGCTTCTCTCACTG+TGG 0.691209 3_2:+27622494 None:intergenic
TACTATCATTCCAAACTGGG+GGG 0.708793 3_2:-27623606 Msa0401500:CDS
TATGCCGAAGTATACAAGGG+AGG 0.735010 3_2:-27622528 Msa0401500:CDS
GTTGTGATTAGTGCAGACTG+GGG 0.781531 3_2:+27624286 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAAAATTATTTAATTTT+GGG + chr3_2:27623895-27623914 None:intergenic 0.0%
!!! TTTAAAAAATTATTTAATTT+TGG + chr3_2:27623896-27623915 None:intergenic 0.0%
!!! AAAATTAATTTTAATTATAA+TGG - chr3_2:27628241-27628260 Msa0401500:intron 0.0%
!! AGTTAAATATTAAGATAAAT+GGG + chr3_2:27623200-27623219 None:intergenic 10.0%
!! AAGTTAAATATTAAGATAAA+TGG + chr3_2:27623201-27623220 None:intergenic 10.0%
!! ATTTATCTTAATATTTAACT+TGG - chr3_2:27623200-27623219 Msa0401500:intron 10.0%
!! AAGTAAATACTTATATAATT+TGG + chr3_2:27623967-27623986 None:intergenic 10.0%
!!! AATATAATTTTGTATACTAT+TGG + chr3_2:27624311-27624330 None:intergenic 10.0%
!!! TTTTCTTCAAAAAAATTTTT+TGG - chr3_2:27624433-27624452 Msa0401500:CDS 10.0%
!!! ATTTAAACAAAAATAACTTT+TGG + chr3_2:27625202-27625221 None:intergenic 10.0%
!! AATATTGAGTAATATATTTA+GGG + chr3_2:27625393-27625412 None:intergenic 10.0%
!! AAATATTGAGTAATATATTT+AGG + chr3_2:27625394-27625413 None:intergenic 10.0%
!! GACTATAAATTAAAAATAAA+GGG + chr3_2:27625815-27625834 None:intergenic 10.0%
!! TGACTATAAATTAAAAATAA+AGG + chr3_2:27625816-27625835 None:intergenic 10.0%
!! TATATCTTATATTCATATTT+CGG + chr3_2:27626037-27626056 None:intergenic 10.0%
!! GAAATAAAAAATATTAAATG+TGG + chr3_2:27627456-27627475 None:intergenic 10.0%
!! TAGTTGAATAATAAATAATA+AGG - chr3_2:27628354-27628373 Msa0401500:intron 10.0%
!!! ATTTAATTTTTCCATTTATT+TGG + chr3_2:27629844-27629863 None:intergenic 10.0%
!! ATAATAATCAAAATTATAGA+AGG + chr3_2:27630752-27630771 None:intergenic 10.0%
!!! CAATATTAACATTTTTTTTA+GGG + chr3_2:27630861-27630880 None:intergenic 10.0%
!!! ACAATATTAACATTTTTTTT+AGG + chr3_2:27630862-27630881 None:intergenic 10.0%
!!! TTTTGAATTTATATTGTACT+TGG + chr3_2:27622543-27622562 None:intergenic 15.0%
!! GTTAAATATTAAGATAAATG+GGG + chr3_2:27623199-27623218 None:intergenic 15.0%
!! TTGTGACAAATTATTTATAT+GGG + chr3_2:27623685-27623704 None:intergenic 15.0%
!! TTTGTGACAAATTATTTATA+TGG + chr3_2:27623686-27623705 None:intergenic 15.0%
!!! AGTTTAATTTTTTTGTTTAG+AGG - chr3_2:27623711-27623730 Msa0401500:CDS 15.0%
!! ATAAAGTAAAAACAGAAAAT+TGG - chr3_2:27623935-27623954 Msa0401500:intron 15.0%
!! AAATACTTATATAATTTGGT+TGG + chr3_2:27623963-27623982 None:intergenic 15.0%
!!! CTAATTTGTCTATAAAATTT+TGG - chr3_2:27624406-27624425 Msa0401500:CDS 15.0%
!!! AATATTTTCCTTCATTTATT+TGG - chr3_2:27625033-27625052 Msa0401500:intron 15.0%
!!! ACTCTTTTTTTTTTTTTTGA+GGG + chr3_2:27625168-27625187 None:intergenic 15.0%
!!! AACTCTTTTTTTTTTTTTTG+AGG + chr3_2:27625169-27625188 None:intergenic 15.0%
!! AAAGAAATTATTACCTAAAA+AGG + chr3_2:27625343-27625362 None:intergenic 15.0%
!! ATATTGAGTAATATATTTAG+GGG + chr3_2:27625392-27625411 None:intergenic 15.0%
!!! AAAATTAATGTGTCTTTTAT+AGG - chr3_2:27625774-27625793 Msa0401500:intron 15.0%
!!! TTTTTTATGCTATCAAAAAT+GGG + chr3_2:27626078-27626097 None:intergenic 15.0%
!!! AATATTTTATACAGTAGTAT+AGG - chr3_2:27626125-27626144 Msa0401500:intron 15.0%
!!! ATGAAATCATATAGTTTTTT+AGG - chr3_2:27626241-27626260 Msa0401500:intron 15.0%
!!! TAAATTTTTTTGACCAAATA+TGG - chr3_2:27627510-27627529 Msa0401500:intron 15.0%
!! AAAGAAAAATTATCCATATT+TGG + chr3_2:27627526-27627545 None:intergenic 15.0%
!! TTTATTATTCAACTAACTAT+TGG + chr3_2:27628349-27628368 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+GGG + chr3_2:27628967-27628986 None:intergenic 15.0%
!! AAATGCTATTAAAATTAAGT+AGG + chr3_2:27628966-27628985 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG + chr3_2:27628875-27628894 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG - chr3_2:27628775-27628794 Msa0401500:intron 15.0%
!! AAATGCTATTAAAATTAAGT+AGG - chr3_2:27628966-27628985 Msa0401500:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG - chr3_2:27628967-27628986 Msa0401500:intron 15.0%
!!! ATTGTGTTAATTTGTTATGA+AGG + chr3_2:27622410-27622429 None:intergenic 20.0%
!!! AATTTAGGATAGTTTATGTA+AGG + chr3_2:27622991-27623010 None:intergenic 20.0%
!! ATAAACTATCCTAAATTTAG+TGG - chr3_2:27622994-27623013 Msa0401500:intron 20.0%
!! CCTTGATATTACTAAAATTT+AGG + chr3_2:27623045-27623064 None:intergenic 20.0%
!!! CCTAAATTTTAGTAATATCA+AGG - chr3_2:27623042-27623061 Msa0401500:intron 20.0%
!!! TACAATGATTAAACTTTTTG+TGG + chr3_2:27623090-27623109 None:intergenic 20.0%
!! TAATTATGTCCTTAATTGTT+AGG + chr3_2:27623155-27623174 None:intergenic 20.0%
!! AGTTTAGATAATGTCTTTAT+AGG - chr3_2:27624004-27624023 Msa0401500:intron 20.0%
!! GATGAAAGATAATATTATGT+TGG + chr3_2:27624044-27624063 None:intergenic 20.0%
!! AATTATAACAAAACATGCTA+GGG + chr3_2:27624339-27624358 None:intergenic 20.0%
!! AATGAAGGAAAATATTTGAT+TGG + chr3_2:27625029-27625048 None:intergenic 20.0%
!! AATATATGAGAAATACTAAC+CGG - chr3_2:27625219-27625238 Msa0401500:intron 20.0%
!! CTGATTAAGAATACTAAAAA+AGG - chr3_2:27625253-27625272 Msa0401500:intron 20.0%
!!! AATCAATATTTTATACCACA+AGG - chr3_2:27625530-27625549 Msa0401500:intron 20.0%
!! AAAGAAATAAAATAAGTCAC+CGG - chr3_2:27625664-27625683 Msa0401500:intron 20.0%
!! ATCTCAATAAATTCTTATAC+CGG + chr3_2:27625686-27625705 None:intergenic 20.0%
!!! CTTTTTTATGCTATCAAAAA+TGG + chr3_2:27626079-27626098 None:intergenic 20.0%
!!! TGAATAGTTATTTTTGTGAA+GGG + chr3_2:27626432-27626451 None:intergenic 20.0%
!!! ATGAATAGTTATTTTTGTGA+AGG + chr3_2:27626433-27626452 None:intergenic 20.0%
!! TTCACAAAAATAACTATTCA+TGG - chr3_2:27626432-27626451 Msa0401500:intron 20.0%
!! AAAAAGAATTGATCAATTTG+AGG + chr3_2:27626482-27626501 None:intergenic 20.0%
!!! TTTTCCCTAAATAGATAAAA+TGG - chr3_2:27626604-27626623 Msa0401500:intron 20.0%
!!! ATTGCCATTTTATCTATTTA+GGG + chr3_2:27626611-27626630 None:intergenic 20.0%
!!! TATTGCCATTTTATCTATTT+AGG + chr3_2:27626612-27626631 None:intergenic 20.0%
!!! ACTATGTTTTTTTAGTGAAT+TGG - chr3_2:27626873-27626892 Msa0401500:CDS 20.0%
!! AAATCTCTATTCTTATATTC+AGG + chr3_2:27626911-27626930 None:intergenic 20.0%
!! TATTCTCTACCATAATAAAA+AGG - chr3_2:27626985-27627004 Msa0401500:intron 20.0%
!!! CAATTTGATAGCAAATAAAA+GGG + chr3_2:27627070-27627089 None:intergenic 20.0%
!! TTAAATGAGACAACATTAAA+TGG + chr3_2:27627478-27627497 None:intergenic 20.0%
!!! TTCTTTTGTTACAATAAGAT+TGG - chr3_2:27627540-27627559 Msa0401500:intron 20.0%
!!! TCTTTTGTTACAATAAGATT+GGG - chr3_2:27627541-27627560 Msa0401500:intron 20.0%
!!! GTTTATTCAATTTTGAATCA+TGG - chr3_2:27627673-27627692 Msa0401500:intron 20.0%
!!! TTGTTGATGTTTTTTCTTTT+TGG - chr3_2:27627948-27627967 Msa0401500:intron 20.0%
!!! TGTTGATGTTTTTTCTTTTT+GGG - chr3_2:27627949-27627968 Msa0401500:intron 20.0%
!!! GTATTTTTAGTATTTCAGTT+AGG + chr3_2:27628037-27628056 None:intergenic 20.0%
!!! AGCATAATTCCTTTTTTAAT+TGG - chr3_2:27628162-27628181 Msa0401500:intron 20.0%
!!! GCATAATTCCTTTTTTAATT+GGG - chr3_2:27628163-27628182 Msa0401500:intron 20.0%
!! ATGTATGTAAACACAAAAAT+TGG + chr3_2:27628322-27628341 None:intergenic 20.0%
!!! AATTTTGCGATAATTTTTTG+CGG - chr3_2:27628810-27628829 Msa0401500:intron 20.0%
!! AAACAAATTTGAATTGAGTA+AGG - chr3_2:27628905-27628924 Msa0401500:intron 20.0%
!! AATGCAGAAAAACAAAATTA+GGG - chr3_2:27628938-27628957 Msa0401500:intron 20.0%
!! TTATATTATATGCACAGATT+GGG - chr3_2:27629128-27629147 Msa0401500:intron 20.0%
!!! GCTAGTTTTATATATTGTAA+GGG - chr3_2:27629490-27629509 Msa0401500:intron 20.0%
!!! CTAGTTTTATATATTGTAAG+GGG - chr3_2:27629491-27629510 Msa0401500:intron 20.0%
!! AATATGATGAATATATCATC+AGG - chr3_2:27629514-27629533 Msa0401500:intron 20.0%
!!! TGTGTTTTATTTGTAAAGAA+AGG + chr3_2:27629636-27629655 None:intergenic 20.0%
!! ATTAGTTCAAACCAAATAAA+TGG - chr3_2:27629830-27629849 Msa0401500:intron 20.0%
!! TACTTTATTGTAAAGTTGTA+TGG - chr3_2:27630206-27630225 Msa0401500:intron 20.0%
!! AATATAATGCTTATGAAACA+AGG + chr3_2:27630529-27630548 None:intergenic 20.0%
!!! TCATATAATCAACATTTTGT+TGG + chr3_2:27630576-27630595 None:intergenic 20.0%
!! ATCAAAATTATAGAAGGAAA+AGG + chr3_2:27630746-27630765 None:intergenic 20.0%
!! AAGTAAATCAAATAAACACT+AGG + chr3_2:27630817-27630836 None:intergenic 20.0%
!!! TTAATATGAACATTTTGTGA+TGG - chr3_2:27631062-27631081 Msa0401500:CDS 20.0%
!! TCATATAATCTTTGAGTAAT+AGG + chr3_2:27631240-27631259 None:intergenic 20.0%
! AAAGAGAGTTATAATGAGAA+TGG + chr3_2:27622465-27622484 None:intergenic 25.0%
! TATTGAGAGAATTTCACATT+TGG + chr3_2:27622674-27622693 None:intergenic 25.0%
! AATGTGAAATTCTCTCAATA+TGG - chr3_2:27622674-27622693 Msa0401500:intron 25.0%
! TTCCACAAAGTAATAGTAAA+AGG + chr3_2:27622735-27622754 None:intergenic 25.0%
!! TTTAGTCTTCCTAACAATTA+AGG - chr3_2:27623143-27623162 Msa0401500:intron 25.0%
!! AAGTCCTAAAATTCTAGTTA+AGG - chr3_2:27623734-27623753 Msa0401500:intron 25.0%
!! TGTACCTTAACTAGAATTTT+AGG + chr3_2:27623741-27623760 None:intergenic 25.0%
! AAAAGTAGTATTACTAACTC+TGG + chr3_2:27623840-27623859 None:intergenic 25.0%
! TATTATCTTTCATCTTCTAG+TGG - chr3_2:27624050-27624069 Msa0401500:intron 25.0%
!! TCTTTTATAATCACTTTGCA+TGG - chr3_2:27624076-27624095 Msa0401500:intron 25.0%
!! TATCATTTAGTTTCCTATGT+TGG - chr3_2:27624105-27624124 Msa0401500:intron 25.0%
!! ATCATTTAGTTTCCTATGTT+GGG - chr3_2:27624106-27624125 Msa0401500:intron 25.0%
!! TCAATCTCTCTTTAAGTTAT+TGG + chr3_2:27624248-27624267 None:intergenic 25.0%
! GAATTATAACAAAACATGCT+AGG + chr3_2:27624340-27624359 None:intergenic 25.0%
!!! AATTTTTTAGCTCTTTTCTC+TGG - chr3_2:27624539-27624558 Msa0401500:intron 25.0%
!!! AAAAATAACTTTTGGCCTTT+GGG + chr3_2:27625194-27625213 None:intergenic 25.0%
!! GAAGTTTGTTTGACTATTTA+TGG + chr3_2:27625321-27625340 None:intergenic 25.0%
!!! TTATAGTCATTTTCTGATGA+TGG - chr3_2:27625827-27625846 Msa0401500:intron 25.0%
! ATAAAATTACATCAAGTGGA+GGG + chr3_2:27625989-27626008 None:intergenic 25.0%
! AATAAAATTACATCAAGTGG+AGG + chr3_2:27625990-27626009 None:intergenic 25.0%
! TCGAATAAAATTACATCAAG+TGG + chr3_2:27625993-27626012 None:intergenic 25.0%
! ACACTATGTTATTGTAGTAA+AGG - chr3_2:27626154-27626173 Msa0401500:intron 25.0%
!! ATTTTTCATTTCTCCTTCAA+AGG - chr3_2:27626332-27626351 Msa0401500:intron 25.0%
! AATAACTATTCATGGAACTA+TGG - chr3_2:27626440-27626459 Msa0401500:intron 25.0%
! ACCATAATAAAAAGGCTAAT+AGG - chr3_2:27626993-27627012 Msa0401500:intron 25.0%
!!! TCCTATTAGCCTTTTTATTA+TGG + chr3_2:27626997-27627016 None:intergenic 25.0%
!! CCAATTTGATAGCAAATAAA+AGG + chr3_2:27627071-27627090 None:intergenic 25.0%
!!! CCTTTTATTTGCTATCAAAT+TGG - chr3_2:27627068-27627087 Msa0401500:intron 25.0%
! TGTCCATGATTTATGTTTAA+GGG + chr3_2:27627137-27627156 None:intergenic 25.0%
! ATGTCCATGATTTATGTTTA+AGG + chr3_2:27627138-27627157 None:intergenic 25.0%
! AAAATTACAGCCAATCTAAT+AGG - chr3_2:27627167-27627186 Msa0401500:intron 25.0%
! TTTGAAAAAGCCTATTAGAT+TGG + chr3_2:27627180-27627199 None:intergenic 25.0%
!!! TGATGGTGGAAAAAAAAATT+AGG - chr3_2:27627216-27627235 Msa0401500:CDS 25.0%
!!! ATCTCAGACGTTTATTTTTT+AGG - chr3_2:27627309-27627328 Msa0401500:intron 25.0%
! TTTCATAGACTACTAATAAC+TGG - chr3_2:27627345-27627364 Msa0401500:intron 25.0%
!!! CATTGGCTATTTTTTGTTTT+AGG - chr3_2:27627721-27627740 Msa0401500:intron 25.0%
! ATGTAACAACTAACATTGAA+TGG - chr3_2:27627774-27627793 Msa0401500:intron 25.0%
! CATTATAGATAGATATGTCA+AGG - chr3_2:27627852-27627871 Msa0401500:intron 25.0%
!!! TAGTTGTTGATGTTTTGTTT+TGG - chr3_2:27627918-27627937 Msa0401500:intron 25.0%
!!! TTTTTGAGCCCAATTAAAAA+AGG + chr3_2:27628174-27628193 None:intergenic 25.0%
! TATAATCTAATTCTGTGCTT+TGG + chr3_2:27628394-27628413 None:intergenic 25.0%
! TAGTGACTCAAATAAAATGT+AGG - chr3_2:27628478-27628497 Msa0401500:intron 25.0%
! AGTGACTCAAATAAAATGTA+GGG - chr3_2:27628479-27628498 Msa0401500:intron 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG + chr3_2:27628615-27628634 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG + chr3_2:27628616-27628635 None:intergenic 25.0%
! CAAAATTAGAACACTATGAA+AGG - chr3_2:27628678-27628697 Msa0401500:intron 25.0%
! CAATGCAGAAAAACAAAATT+AGG - chr3_2:27628937-27628956 Msa0401500:intron 25.0%
!! TTACAAGGTCACTATTTTAT+AGG - chr3_2:27628997-27629016 Msa0401500:intron 25.0%
!! TACAAGGTCACTATTTTATA+GGG - chr3_2:27628998-27629017 Msa0401500:intron 25.0%
! TTAACCCTAAAATGTATGAA+TGG - chr3_2:27629034-27629053 Msa0401500:intron 25.0%
!! TGTTCCATTCATACATTTTA+GGG + chr3_2:27629041-27629060 None:intergenic 25.0%
!! ATGTTCCATTCATACATTTT+AGG + chr3_2:27629042-27629061 None:intergenic 25.0%
! ATGTGAATGAAACAATCTAA+TGG - chr3_2:27629078-27629097 Msa0401500:intron 25.0%
! GTTATATTATATGCACAGAT+TGG - chr3_2:27629127-27629146 Msa0401500:intron 25.0%
! TGTTGATATTATATGCTGTT+TGG + chr3_2:27629228-27629247 None:intergenic 25.0%
! TGATGTTTCTTAAAGCAATT+AGG - chr3_2:27629439-27629458 Msa0401500:intron 25.0%
! GATGTTTCTTAAAGCAATTA+GGG - chr3_2:27629440-27629459 Msa0401500:intron 25.0%
!!! CGCTAGTTTTATATATTGTA+AGG - chr3_2:27629489-27629508 Msa0401500:intron 25.0%
!!! AGTGTTTTTTTTATTGGTCT+AGG - chr3_2:27629561-27629580 Msa0401500:intron 25.0%
! ACTAATTAAGATCTTGTTCA+AGG + chr3_2:27629816-27629835 None:intergenic 25.0%
! ATTTAATCATTATTGTACGC+AGG - chr3_2:27629895-27629914 Msa0401500:intron 25.0%
! ATTTAGGAGATCATGTAAAA+GGG + chr3_2:27630080-27630099 None:intergenic 25.0%
! TATTTAGGAGATCATGTAAA+AGG + chr3_2:27630081-27630100 None:intergenic 25.0%
! TTACATGATCTCCTAAATAA+TGG - chr3_2:27630082-27630101 Msa0401500:intron 25.0%
!!! ATCTCCTAAATAATGGATTA+AGG - chr3_2:27630089-27630108 Msa0401500:intron 25.0%
!!! TCTCCTAAATAATGGATTAA+GGG - chr3_2:27630090-27630109 Msa0401500:intron 25.0%
! AAACCCTTAATCCATTATTT+AGG + chr3_2:27630096-27630115 None:intergenic 25.0%
!!! TAAATAATGGATTAAGGGTT+TGG - chr3_2:27630095-27630114 Msa0401500:intron 25.0%
! TAAGATTGACAGAATAACAA+GGG + chr3_2:27630233-27630252 None:intergenic 25.0%
! TTATCTATTGTATGATACAG+TGG - chr3_2:27630338-27630357 Msa0401500:intron 25.0%
!! ATGAAAAAAGTGTAGTTGAA+AGG + chr3_2:27630959-27630978 None:intergenic 25.0%
! CTAATCATGCATTTCTTAAA+TGG - chr3_2:27631204-27631223 Msa0401500:CDS 25.0%
TCTCATTATAACTCTCTTTG+TGG - chr3_2:27622466-27622485 Msa0401500:CDS 30.0%
TGAAATTCTCTCAATATGGA+GGG - chr3_2:27622678-27622697 Msa0401500:intron 30.0%
! TGCCTTTTACTATTACTTTG+TGG - chr3_2:27622730-27622749 Msa0401500:intron 30.0%
AATCAATGATCGTTTGTGAT+TGG + chr3_2:27623273-27623292 None:intergenic 30.0%
GTTGAAACTAACTGATTGAA+AGG + chr3_2:27623535-27623554 None:intergenic 30.0%
!!! TGTGAACTCACATTCTTTTT+TGG - chr3_2:27623605-27623624 Msa0401500:CDS 30.0%
TCTAGTTAAGGTACATTCTA+TGG - chr3_2:27623746-27623765 Msa0401500:intron 30.0%
CTAGTTAAGGTACATTCTAT+GGG - chr3_2:27623747-27623766 Msa0401500:intron 30.0%
AAGTGTTACATGCACATATA+TGG - chr3_2:27624132-27624151 Msa0401500:intron 30.0%
GCTTAGAAGATTATTTGTAG+AGG - chr3_2:27624172-27624191 Msa0401500:intron 30.0%
! CTGATTTGCATATGAAACTT+TGG + chr3_2:27624640-27624659 None:intergenic 30.0%
TCTTCAATCATTAGAGACTA+TGG + chr3_2:27624730-27624749 None:intergenic 30.0%
ACACTTAAGAAAAGGTTGAA+AGG + chr3_2:27624973-27624992 None:intergenic 30.0%
GAACACAAACACTTAAGAAA+AGG + chr3_2:27624981-27625000 None:intergenic 30.0%
!! TCCTTCATTTATTTGGTGTA+AGG - chr3_2:27625040-27625059 Msa0401500:intron 30.0%
!! CCTTCATTTATTTGGTGTAA+GGG - chr3_2:27625041-27625060 Msa0401500:intron 30.0%
AAAAAAAAGAGTTGTCCCAA+AGG - chr3_2:27625176-27625195 Msa0401500:intron 30.0%
!! CAAAAATAACTTTTGGCCTT+TGG + chr3_2:27625195-27625214 None:intergenic 30.0%
! GTCAAACAAACTTCCTTTTT+AGG - chr3_2:27625327-27625346 Msa0401500:intron 30.0%
CAAATTCGCTAAAAACAAAG+AGG - chr3_2:27625491-27625510 Msa0401500:intron 30.0%
!! GAATTATGGGATTTTAACAC+TGG + chr3_2:27625588-27625607 None:intergenic 30.0%
TTAACATACACATGACTTGA+GGG + chr3_2:27625879-27625898 None:intergenic 30.0%
ATTAACATACACATGACTTG+AGG + chr3_2:27625880-27625899 None:intergenic 30.0%
!!! CGCATCTGTTCTTTTTTTTT+TGG + chr3_2:27626530-27626549 None:intergenic 30.0%
AATAGAGATTTCTACATTGC+TGG - chr3_2:27626920-27626939 Msa0401500:intron 30.0%
TATCAACCTCAAAGGAATTA+TGG - chr3_2:27627021-27627040 Msa0401500:intron 30.0%
ATGCCCTTAAACATAAATCA+TGG - chr3_2:27627131-27627150 Msa0401500:intron 30.0%
ATTTCTCAATCACATCATGA+TGG - chr3_2:27627199-27627218 Msa0401500:intron 30.0%
ATTGGGTTTCCAAATTTATC+TGG - chr3_2:27627558-27627577 Msa0401500:intron 30.0%
TTGGGTTTCCAAATTTATCT+GGG - chr3_2:27627559-27627578 Msa0401500:intron 30.0%
!! TTTTAGGTGCTAGTATATCA+TGG - chr3_2:27627737-27627756 Msa0401500:intron 30.0%
AACATTGAATGGTCTCTATA+TGG - chr3_2:27627785-27627804 Msa0401500:intron 30.0%
TCTATCTATAATGTCTAACC+AGG + chr3_2:27627845-27627864 None:intergenic 30.0%
!!! TCTTTTTGGGTACTACTAAA+TGG - chr3_2:27627962-27627981 Msa0401500:intron 30.0%
AGGAATGAGCAAAAAATGTT+AGG + chr3_2:27628017-27628036 None:intergenic 30.0%
GGCATTATAGTCATTTCAAT+GGG - chr3_2:27628114-27628133 Msa0401500:intron 30.0%
TAAATAATAAGGCAGCAGAT+TGG - chr3_2:27628365-27628384 Msa0401500:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + chr3_2:27628522-27628541 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + chr3_2:27628523-27628542 None:intergenic 30.0%
! AAATTTCATGCCACTTGAAA+GGG + chr3_2:27629420-27629439 None:intergenic 30.0%
TTTCTTAAAGCAATTAGGGT+CGG - chr3_2:27629444-27629463 Msa0401500:intron 30.0%
AATTGTACTTTCGTATCTCA+AGG + chr3_2:27629609-27629628 None:intergenic 30.0%
AACAAACCCTAATGATGTAT+AGG - chr3_2:27629678-27629697 Msa0401500:intron 30.0%
AGCAATCCTATACATCATTA+GGG + chr3_2:27629687-27629706 None:intergenic 30.0%
AAGCAATCCTATACATCATT+AGG + chr3_2:27629688-27629707 None:intergenic 30.0%
TCAACTTAAATCTTTCAGAG+TGG - chr3_2:27629727-27629746 Msa0401500:intron 30.0%
! TTACTATGGCCTTAACTTAT+AGG - chr3_2:27629782-27629801 Msa0401500:intron 30.0%
CTTACTAATTTGAGTAGAGT+CGG + chr3_2:27629874-27629893 None:intergenic 30.0%
ATGTACAAGCATATTTCAAC+CGG - chr3_2:27629945-27629964 Msa0401500:intron 30.0%
TTTAGGAGATCATGTAAAAG+GGG + chr3_2:27630079-27630098 None:intergenic 30.0%
! GATTAAGGGTTTGGATTTTT+AGG - chr3_2:27630104-27630123 Msa0401500:intron 30.0%
TACTCTTTACTTATGACTGT+AGG - chr3_2:27630136-27630155 Msa0401500:intron 30.0%
ACTCTTTACTTATGACTGTA+GGG - chr3_2:27630137-27630156 Msa0401500:intron 30.0%
CTAAGATTGACAGAATAACA+AGG + chr3_2:27630234-27630253 None:intergenic 30.0%
! GAATATTTTGTTGCAGTAAC+GGG + chr3_2:27630383-27630402 None:intergenic 30.0%
! GGAATATTTTGTTGCAGTAA+CGG + chr3_2:27630384-27630403 None:intergenic 30.0%
! TAATCAACATTTTGTTGGTG+TGG + chr3_2:27630571-27630590 None:intergenic 30.0%
TATATTTGTCTGAGTGAAAC+TGG + chr3_2:27631020-27631039 None:intergenic 30.0%
AATCTTTGAGTAATAGGAAG+AGG + chr3_2:27631234-27631253 None:intergenic 30.0%
AGATGAACCAATGAAGAACT+TGG + chr3_2:27622440-27622459 None:intergenic 35.0%
! GTACTTGGACTTTTGTAGTT+TGG + chr3_2:27622528-27622547 None:intergenic 35.0%
GAATATTGTGCTTGATGCAA+TGG - chr3_2:27622592-27622611 Msa0401500:intron 35.0%
ACAAAATTGAGAAGCTACCA+GGG - chr3_2:27622645-27622664 Msa0401500:intron 35.0%
GTGAAATTCTCTCAATATGG+AGG - chr3_2:27622677-27622696 Msa0401500:intron 35.0%
AAACATTGCCTCTTCTTCTT+TGG - chr3_2:27622771-27622790 Msa0401500:intron 35.0%
TCCTAAATTTAGTGGCTCAA+TGG - chr3_2:27623002-27623021 Msa0401500:intron 35.0%
TCCATTGAGCCACTAAATTT+AGG + chr3_2:27623006-27623025 None:intergenic 35.0%
GTTTCAACACAATTGCATCT+AGG - chr3_2:27623547-27623566 Msa0401500:CDS 35.0%
AAGAATGTGAGTTCACAACA+AGG + chr3_2:27623602-27623621 None:intergenic 35.0%
!! TCTTTTTCTCAAGTTGTTCC+TGG + chr3_2:27623646-27623665 None:intergenic 35.0%
TTATAATCACTTTGCATGGC+TGG - chr3_2:27624080-27624099 Msa0401500:intron 35.0%
GTAACACTTAATCCCAACAT+AGG + chr3_2:27624121-27624140 None:intergenic 35.0%
ATATGGACATGTAACGACAT+AGG - chr3_2:27624149-27624168 Msa0401500:intron 35.0%
TATGGACATGTAACGACATA+GGG - chr3_2:27624150-27624169 Msa0401500:intron 35.0%
TTCTTAGAGAGTAATTAGCC+AGG + chr3_2:27624510-27624529 None:intergenic 35.0%
TCTTATAGTGTAGTCTTCGA+AGG - chr3_2:27624817-27624836 Msa0401500:intron 35.0%
!! TGGTTTGGTTGTATGAGTTT+GGG - chr3_2:27624842-27624861 Msa0401500:intron 35.0%
CCCTTACACCAAATAAATGA+AGG + chr3_2:27625044-27625063 None:intergenic 35.0%
TAGTATTCTTAATCAGTGCC+CGG + chr3_2:27625249-27625268 None:intergenic 35.0%
AAGCACAGAAATGTGAAGAA+TGG - chr3_2:27625562-27625581 Msa0401500:intron 35.0%
! ATGTGTCTTTTATAGGCAAG+TGG - chr3_2:27625781-27625800 Msa0401500:intron 35.0%
! TTTTCCCATTACTCTTCACA+CGG + chr3_2:27626409-27626428 None:intergenic 35.0%
TCATCTGATTATGACACCAA+TGG - chr3_2:27626827-27626846 Msa0401500:CDS 35.0%
! GAATATTGTGTGCAAGTTGA+GGG + chr3_2:27626970-27626989 None:intergenic 35.0%
AGAATATTGTGTGCAAGTTG+AGG + chr3_2:27626971-27626990 None:intergenic 35.0%
AGGACAATTATCAACCTCAA+AGG - chr3_2:27627013-27627032 Msa0401500:intron 35.0%
CACATACCATAATTCCTTTG+AGG + chr3_2:27627030-27627049 None:intergenic 35.0%
! GTTTAAGGGCATAATCAACA+TGG + chr3_2:27627123-27627142 None:intergenic 35.0%
CATGAATCACGTAACAAACT+TGG + chr3_2:27627617-27627636 None:intergenic 35.0%
TCCTTTGTCTGTGATATCAT+TGG - chr3_2:27627704-27627723 Msa0401500:intron 35.0%
GGAACAATCCATACTAACTA+TGG + chr3_2:27627824-27627843 None:intergenic 35.0%
! TAGTTAGTATGGATTGTTCC+TGG - chr3_2:27627824-27627843 Msa0401500:intron 35.0%
AGATATGTCAAGGAAACAAC+TGG - chr3_2:27627862-27627881 Msa0401500:intron 35.0%
!!! GTTGATGTTTTGTTTTGGTG+AGG - chr3_2:27627923-27627942 Msa0401500:intron 35.0%
GGGCATTATAGTCATTTCAA+TGG - chr3_2:27628113-27628132 Msa0401500:intron 35.0%
!!! TGGGAATGAGCATTTTTTGT+TGG - chr3_2:27628133-27628152 Msa0401500:intron 35.0%
!!! GGGAATGAGCATTTTTTGTT+GGG - chr3_2:27628134-27628153 Msa0401500:intron 35.0%
AAGTAGGGACTAAACTTACA+AGG + chr3_2:27628982-27629001 None:intergenic 35.0%
AAGTAGGGACTAAACTTACA+AGG - chr3_2:27628982-27629001 Msa0401500:intron 35.0%
GATTCAAATTCCCTTTCAAG+TGG - chr3_2:27629407-27629426 Msa0401500:intron 35.0%
! CAAATTTCATGCCACTTGAA+AGG + chr3_2:27629421-27629440 None:intergenic 35.0%
!!! GCGTCGAGTGTTTTTTTTAT+TGG - chr3_2:27629555-27629574 Msa0401500:intron 35.0%
TATCTCAAGGAAATCAAGAC+GGG + chr3_2:27629596-27629615 None:intergenic 35.0%
GTATCTCAAGGAAATCAAGA+CGG + chr3_2:27629597-27629616 None:intergenic 35.0%
! ATCACACAGCTCTTTTACTA+TGG - chr3_2:27629768-27629787 Msa0401500:intron 35.0%
! TATGGCCTTAACTTATAGGT+TGG - chr3_2:27629786-27629805 Msa0401500:intron 35.0%
TGTACAAGCATATTTCAACC+GGG - chr3_2:27629946-27629965 Msa0401500:intron 35.0%
CAGTACTATCATTCCAAACT+GGG - chr3_2:27630030-27630049 Msa0401500:intron 35.0%
AGTACTATCATTCCAAACTG+GGG - chr3_2:27630031-27630050 Msa0401500:intron 35.0%
AAAAGGGGAATGATTGTTGT+AGG + chr3_2:27630064-27630083 None:intergenic 35.0%
TGATACAGTGGTGATATAGA+TGG - chr3_2:27630350-27630369 Msa0401500:intron 35.0%
! GGGAAGCTTCATCTTTTTAA+GGG + chr3_2:27630405-27630424 None:intergenic 35.0%
! TGGGAAGCTTCATCTTTTTA+AGG + chr3_2:27630406-27630425 None:intergenic 35.0%
! TTGGTATCCTTGGTTCTTTA+AGG - chr3_2:27630436-27630455 Msa0401500:intron 35.0%
! TGGTATCCTTGGTTCTTTAA+GGG - chr3_2:27630437-27630456 Msa0401500:intron 35.0%
AGTAACTATTCGTATTGTCG+TGG + chr3_2:27630625-27630644 None:intergenic 35.0%
TGTCACTAAACTAGTGATGA+AGG - chr3_2:27630702-27630721 Msa0401500:intron 35.0%
AGCTCGAACTCTAAACTTAA+AGG - chr3_2:27630985-27631004 Msa0401500:CDS 35.0%
GCTCGAACTCTAAACTTAAA+GGG - chr3_2:27630986-27631005 Msa0401500:CDS 35.0%
GATGGAATTTCATGTGAAAC+AGG - chr3_2:27631080-27631099 Msa0401500:CDS 35.0%
TAAACCTCCCTTGTATACTT+CGG + chr3_2:27631118-27631137 None:intergenic 35.0%
GAAATGCATGATTAGAGAGA+GGG + chr3_2:27631199-27631218 None:intergenic 35.0%
AGAAATGCATGATTAGAGAG+AGG + chr3_2:27631200-27631219 None:intergenic 35.0%
GAGCAAACCAAGTTCTTCAT+TGG - chr3_2:27622430-27622449 Msa0401500:CDS 40.0%
! CTCTACTTTGTTTGCTTCCA+TGG + chr3_2:27622499-27622518 None:intergenic 40.0%
GCAATGGTTCATTCTCAAGA+TGG - chr3_2:27622608-27622627 Msa0401500:intron 40.0%
GACAAAATTGAGAAGCTACC+AGG - chr3_2:27622644-27622663 Msa0401500:intron 40.0%
AATTTCACATTTGGTTGCCC+TGG + chr3_2:27622665-27622684 None:intergenic 40.0%
! ATATGGAGGGTATGTTACAG+TGG - chr3_2:27622691-27622710 Msa0401500:intron 40.0%
GTTACAGTGGACAAAATAGC+TGG - chr3_2:27622704-27622723 Msa0401500:intron 40.0%
TTGATGCGAGATCAACATAG+AGG - chr3_2:27624677-27624696 Msa0401500:intron 40.0%
TGATGCGAGATCAACATAGA+GGG - chr3_2:27624678-27624697 Msa0401500:intron 40.0%
!! GTGGTTTGGTTGTATGAGTT+TGG - chr3_2:27624841-27624860 Msa0401500:intron 40.0%
! GGTTTGGTTGTATGAGTTTG+GGG - chr3_2:27624843-27624862 Msa0401500:intron 40.0%
AGTATTCTTAATCAGTGCCC+GGG + chr3_2:27625248-27625267 None:intergenic 40.0%
TAGTATCCTTAACCAGTGAC+CGG - chr3_2:27625365-27625384 Msa0401500:intron 40.0%
GAGTAATATATTTAGGGGCC+CGG + chr3_2:27625387-27625406 None:intergenic 40.0%
! CCTCAAGAAGCGTGAATTAT+GGG + chr3_2:27625601-27625620 None:intergenic 40.0%
! TCCTCAAGAAGCGTGAATTA+TGG + chr3_2:27625602-27625621 None:intergenic 40.0%
AACTTCTTGCATTGCTCCAT+AGG + chr3_2:27626378-27626397 None:intergenic 40.0%
TATGGAGCAATGCAAGAAGT+TGG - chr3_2:27626377-27626396 Msa0401500:intron 40.0%
AGCTGTTCTTCTATCTCCAT+TGG + chr3_2:27626846-27626865 None:intergenic 40.0%
TCTCAATCACATCATGATGG+TGG - chr3_2:27627202-27627221 Msa0401500:CDS 40.0%
TTTCCAAATTTATCTGGGCC+AGG - chr3_2:27627564-27627583 Msa0401500:intron 40.0%
AATCCTGGCCCAGATAAATT+TGG + chr3_2:27627570-27627589 None:intergenic 40.0%
AAATTTATCTGGGCCAGGAT+TGG - chr3_2:27627569-27627588 Msa0401500:intron 40.0%
CTTGGTTTCATCCATATGAG+TGG + chr3_2:27627599-27627618 None:intergenic 40.0%
GCCAATGATATCACAGACAA+AGG + chr3_2:27627708-27627727 None:intergenic 40.0%
ATGGTCTCTATATGGTCCAT+AGG - chr3_2:27627793-27627812 Msa0401500:intron 40.0%
TCTCTATATGGTCCATAGGT+GGG - chr3_2:27627797-27627816 Msa0401500:intron 40.0%
AGCGTGATTTAACTCACACA+TGG - chr3_2:27628092-27628111 Msa0401500:intron 40.0%
GCGTGATTTAACTCACACAT+GGG - chr3_2:27628093-27628112 Msa0401500:intron 40.0%
!! TGGGCTCAAAAAGTGTGTTT+TGG - chr3_2:27628182-27628201 Msa0401500:intron 40.0%
AATGATGACACAGATGAGCA+AGG - chr3_2:27629163-27629182 Msa0401500:intron 40.0%
ACTGCACTCAGTAGTTTGAT+TGG + chr3_2:27629275-27629294 None:intergenic 40.0%
AATCTTACCGAGACCTTCTT+GGG + chr3_2:27629391-27629410 None:intergenic 40.0%
AAAAAACACTCGACGCATTC+AGG + chr3_2:27629551-27629570 None:intergenic 40.0%
GCGATCCAACCTATAAGTTA+AGG + chr3_2:27629794-27629813 None:intergenic 40.0%
TGTACATAATCGTCACTGCA+TGG + chr3_2:27629932-27629951 None:intergenic 40.0%
ATACTCGAGTTTCGTGACAT+TGG + chr3_2:27629996-27630015 None:intergenic 40.0%
! GTTTGGAATGATAGTACTGC+AGG + chr3_2:27630029-27630048 None:intergenic 40.0%
GCAGTACTATCATTCCAAAC+TGG - chr3_2:27630029-27630048 Msa0401500:intron 40.0%
GTACTATCATTCCAAACTGG+GGG - chr3_2:27630032-27630051 Msa0401500:intron 40.0%
TACTATCATTCCAAACTGGG+GGG - chr3_2:27630033-27630052 Msa0401500:intron 40.0%
ACAGTGGTGATATAGATGGA+AGG - chr3_2:27630354-27630373 Msa0401500:intron 40.0%
CAGTGGTGATATAGATGGAA+GGG - chr3_2:27630355-27630374 Msa0401500:intron 40.0%
GGATACCAAGTTGTCTCAAT+GGG + chr3_2:27630425-27630444 None:intergenic 40.0%
AGGATACCAAGTTGTCTCAA+TGG + chr3_2:27630426-27630445 None:intergenic 40.0%
TTGAGACAACTTGGTATCCT+TGG - chr3_2:27630426-27630445 Msa0401500:intron 40.0%
GAAAGGAAAAACCCCACTAA+AGG + chr3_2:27630942-27630961 None:intergenic 40.0%
TTTCATGTGAAACAGGTTGC+TGG - chr3_2:27631087-27631106 Msa0401500:CDS 40.0%
CTCTTTGTGGCTGAAATCCA+TGG - chr3_2:27622479-27622498 Msa0401500:CDS 45.0%
CCATTGAGCCAAAGAAGAAG+AGG + chr3_2:27622782-27622801 None:intergenic 45.0%
! CCTCTTCTTCTTTGGCTCAA+TGG - chr3_2:27622779-27622798 Msa0401500:intron 45.0%
! CTTCTTCTTTGGCTCAATGG+AGG - chr3_2:27622782-27622801 Msa0401500:intron 45.0%
! TGGTTTTCACATCACAAGCC+AGG - chr3_2:27623625-27623644 Msa0401500:CDS 45.0%
ATTGTGTGACGACTCATTCC+TGG - chr3_2:27624489-27624508 Msa0401500:CDS 45.0%
TAGTGTAGTCTTCGAAGGAG+TGG - chr3_2:27624822-27624841 Msa0401500:intron 45.0%
TAGTCTTCGAAGGAGTGGTT+TGG - chr3_2:27624827-27624846 Msa0401500:intron 45.0%
GTATTCTTAATCAGTGCCCG+GGG + chr3_2:27625247-27625266 None:intergenic 45.0%
AGTATCCTTAACCAGTGACC+GGG - chr3_2:27625366-27625385 Msa0401500:intron 45.0%
GTGCTTCTCTCATAACCTTG+TGG + chr3_2:27625548-27625567 None:intergenic 45.0%
CCCATAATTCACGCTTCTTG+AGG - chr3_2:27625598-27625617 Msa0401500:intron 45.0%
TTGTATACAACATGCACGCC+GGG + chr3_2:27625628-27625647 None:intergenic 45.0%
CTTGTATACAACATGCACGC+CGG + chr3_2:27625629-27625648 None:intergenic 45.0%
TACACATGACTTGAGGGTTG+AGG + chr3_2:27625873-27625892 None:intergenic 45.0%
CATTTCTCCTTCAAAGGTCC+TGG - chr3_2:27626338-27626357 Msa0401500:intron 45.0%
CCATTACTCTTCACACGGAA+GGG + chr3_2:27626404-27626423 None:intergenic 45.0%
CCTTCCGTGTGAAGAGTAAT+GGG - chr3_2:27626402-27626421 Msa0401500:intron 45.0%
ATGAATATCCTACCCCAGCT+GGG + chr3_2:27626796-27626815 None:intergenic 45.0%
TATGAATATCCTACCCCAGC+TGG + chr3_2:27626797-27626816 None:intergenic 45.0%
ATTGCTGGAGAAAGCTATGC+TGG - chr3_2:27626935-27626954 Msa0401500:intron 45.0%
GGTTTCATCCATATGAGTGG+TGG + chr3_2:27627596-27627615 None:intergenic 45.0%
GTCTCTATATGGTCCATAGG+TGG - chr3_2:27627796-27627815 Msa0401500:intron 45.0%
ACTAACTATGGTCCCACCTA+TGG + chr3_2:27627812-27627831 None:intergenic 45.0%
AGGTGGGACCATAGTTAGTA+TGG - chr3_2:27627813-27627832 Msa0401500:intron 45.0%
GTTGTGATTAGTGCAGACTG+GGG + chr3_2:27629356-27629375 None:intergenic 45.0%
GGTTGTGATTAGTGCAGACT+GGG + chr3_2:27629357-27629376 None:intergenic 45.0%
AGGTTGTGATTAGTGCAGAC+TGG + chr3_2:27629358-27629377 None:intergenic 45.0%
GAATCTTACCGAGACCTTCT+TGG + chr3_2:27629392-27629411 None:intergenic 45.0%
!! TTTCAACCGGGTTGATGTTC+AGG - chr3_2:27629958-27629977 Msa0401500:intron 45.0%
TTTCGTGACATTGGCATGGA+GGG + chr3_2:27629987-27630006 None:intergenic 45.0%
TCACGAAACTCGAGTATGAC+TGG - chr3_2:27629999-27630018 Msa0401500:intron 45.0%
CACGAAACTCGAGTATGACT+GGG - chr3_2:27630000-27630019 Msa0401500:intron 45.0%
AGCTTCCCATTGAGACAACT+TGG - chr3_2:27630417-27630436 Msa0401500:intron 45.0%
! TCCTTGGTTCTTTAAGGGAG+AGG - chr3_2:27630442-27630461 Msa0401500:intron 45.0%
ACCTCTCCCTTAAAGAACCA+AGG + chr3_2:27630446-27630465 None:intergenic 45.0%
ATCTAGCGTACCACCTTTAG+TGG - chr3_2:27630926-27630945 Msa0401500:CDS 45.0%
TCTAGCGTACCACCTTTAGT+GGG - chr3_2:27630927-27630946 Msa0401500:CDS 45.0%
AGGAAAAACCCCACTAAAGG+TGG + chr3_2:27630939-27630958 None:intergenic 45.0%
TGTCTGAGTGAAACTGGACT+CGG + chr3_2:27631014-27631033 None:intergenic 45.0%
TGGCTATGCCGAAGTATACA+AGG - chr3_2:27631107-27631126 Msa0401500:CDS 45.0%
GGCTATGCCGAAGTATACAA+GGG - chr3_2:27631108-27631127 Msa0401500:CDS 45.0%
TATGCCGAAGTATACAAGGG+AGG - chr3_2:27631111-27631130 Msa0401500:CDS 45.0%
!!! TAAAAAATTATTTAATTTTG+GGG + chr3_2:27623894-27623913 None:intergenic 5.0%
!! AAATAAAAAATATTAAATGT+GGG + chr3_2:27627455-27627474 None:intergenic 5.0%
!!! TGATTTATTATTTTTTTAAT+TGG - chr3_2:27627650-27627669 Msa0401500:intron 5.0%
!!! GATTTATTATTTTTTTAATT+GGG - chr3_2:27627651-27627670 Msa0401500:intron 5.0%
!!! AAAATTAATTTTAGTTATAA+TGG - chr3_2:27628283-27628302 Msa0401500:intron 5.0%
!!! TAAGTAAATTTTTTTTTATA+GGG + chr3_2:27628582-27628601 None:intergenic 5.0%
!!! ATAAGTAAATTTTTTTTTAT+AGG + chr3_2:27628583-27628602 None:intergenic 5.0%
TGCTCGGAAGGTAGTCAGAT+GGG - chr3_2:27624571-27624590 Msa0401500:intron 50.0%
AGAAATACTAACCGGTGCCC+CGG - chr3_2:27625227-27625246 Msa0401500:intron 50.0%
CACGCTTCTTGAGGATTTCC+CGG - chr3_2:27625607-27625626 Msa0401500:intron 50.0%
TGAGCATCCAGGACCTTTGA+AGG + chr3_2:27626348-27626367 None:intergenic 50.0%
TAGGCAAGAGATGAGCATCC+AGG + chr3_2:27626359-27626378 None:intergenic 50.0%
GGATGCTCATCTCTTGCCTA+TGG - chr3_2:27626359-27626378 Msa0401500:intron 50.0%
CCCTTCCGTGTGAAGAGTAA+TGG - chr3_2:27626401-27626420 Msa0401500:intron 50.0%
CCCATTACTCTTCACACGGA+AGG + chr3_2:27626405-27626424 None:intergenic 50.0%
TGAATATCCTACCCCAGCTG+GGG + chr3_2:27626795-27626814 None:intergenic 50.0%
!! TATGAGTGGTGGACCAATCC+TGG + chr3_2:27627585-27627604 None:intergenic 50.0%
!! GGATTGGTCCACCACTCATA+TGG - chr3_2:27627585-27627604 Msa0401500:intron 50.0%
TAACCGTCCCAAGAAGGTCT+CGG - chr3_2:27629381-27629400 Msa0401500:intron 50.0%
TTACCGAGACCTTCTTGGGA+CGG + chr3_2:27629387-27629406 None:intergenic 50.0%
AAGCAATTAGGGTCGGTCCA+AGG - chr3_2:27629451-27629470 Msa0401500:intron 50.0%
AGCAATTAGGGTCGGTCCAA+GGG - chr3_2:27629452-27629471 Msa0401500:intron 50.0%
GTTTCGTGACATTGGCATGG+AGG + chr3_2:27629988-27630007 None:intergenic 50.0%
CGAGTTTCGTGACATTGGCA+TGG + chr3_2:27629991-27630010 None:intergenic 50.0%
CTAGCGTACCACCTTTAGTG+GGG - chr3_2:27630928-27630947 Msa0401500:CDS 50.0%
TTTGCCACAGTGAGAGAAGC+AGG - chr3_2:27631141-27631160 Msa0401500:CDS 50.0%
ATGTCCTGCTTCTCTCACTG+TGG + chr3_2:27631148-27631167 None:intergenic 50.0%
!! GCTCTTGCTGGTTGATAGCT+TGG + chr3_2:27631177-27631196 None:intergenic 50.0%
ATTAGAGAGAGGGCTCTTGC+TGG + chr3_2:27631189-27631208 None:intergenic 50.0%
TCTCTGGCGCACTTTGTGCT+CGG - chr3_2:27624555-27624574 Msa0401500:intron 55.0%
GTGCTCGGAAGGTAGTCAGA+TGG - chr3_2:27624570-27624589 Msa0401500:intron 55.0%
! GGGGCACTCATTCAACTACG+AGG - chr3_2:27624862-27624881 Msa0401500:intron 55.0%
GAAATACTAACCGGTGCCCC+GGG - chr3_2:27625228-27625247 Msa0401500:intron 55.0%
ATATTTAGGGGCCCGGTCAC+TGG + chr3_2:27625380-27625399 None:intergenic 55.0%
TTGTTCCTTGAGTCCCCAGC+TGG - chr3_2:27626779-27626798 Msa0401500:CDS 55.0%
TGTTCCTTGAGTCCCCAGCT+GGG - chr3_2:27626780-27626799 Msa0401500:CDS 55.0%
CCTTCTTGGGACGGTTAGTG+AGG + chr3_2:27629378-27629397 None:intergenic 55.0%
CCTCACTAACCGTCCCAAGA+AGG - chr3_2:27629375-27629394 Msa0401500:intron 55.0%
GTCCAAGGGTCAAGCTAGTG+AGG - chr3_2:27629466-27629485 Msa0401500:intron 55.0%
!! CAACCGGGTTGATGTTCAGG+AGG - chr3_2:27629961-27629980 Msa0401500:intron 55.0%
TGGCGCACTTTGTGCTCGGA+AGG - chr3_2:27624559-27624578 Msa0401500:intron 60.0%
TTAATCAGTGCCCGGGGCAC+CGG + chr3_2:27625241-27625260 None:intergenic 60.0%
GTTCCTTGAGTCCCCAGCTG+GGG - chr3_2:27626781-27626800 Msa0401500:CDS 60.0%
! CGCCTCACTAGCTTGACCCT+TGG + chr3_2:27629471-27629490 None:intergenic 60.0%
GGGCCTCCTGAACATCAACC+CGG + chr3_2:27629967-27629986 None:intergenic 60.0%
GTAGGACTGTCCCCCCAGTT+TGG + chr3_2:27630046-27630065 None:intergenic 60.0%
! AGGGGCCCGGTCACTGGTTA+AGG + chr3_2:27625374-27625393 None:intergenic 65.0%
CTACCCCAGCTGGGGACTCA+AGG + chr3_2:27626787-27626806 None:intergenic 65.0%
CTTGAGTCCCCAGCTGGGGT+AGG - chr3_2:27626785-27626804 Msa0401500:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 27622398 27631263 27622398 ID=Msa0401500;Name=Msa0401500
chr3_2 mRNA 27622398 27631263 27622398 ID=Msa0401500-mRNA-1;Parent=Msa0401500;Name=Msa0401500-mRNA-1;_AED=0.16;_eAED=0.16;_QI=30|0.16|0.14|0.85|0.66|0.85|7|0|473
chr3_2 exon 27622398 27622559 27622398 ID=Msa0401500-mRNA-1:exon:5704;Parent=Msa0401500-mRNA-1
chr3_2 exon 27623407 27623440 27623407 ID=Msa0401500-mRNA-1:exon:5703;Parent=Msa0401500-mRNA-1
chr3_2 exon 27623536 27623744 27623536 ID=Msa0401500-mRNA-1:exon:5702;Parent=Msa0401500-mRNA-1
chr3_2 exon 27624259 27624516 27624259 ID=Msa0401500-mRNA-1:exon:5701;Parent=Msa0401500-mRNA-1
chr3_2 exon 27626619 27626893 27626619 ID=Msa0401500-mRNA-1:exon:5700;Parent=Msa0401500-mRNA-1
chr3_2 exon 27627200 27627307 27627200 ID=Msa0401500-mRNA-1:exon:5699;Parent=Msa0401500-mRNA-1
chr3_2 exon 27630858 27631263 27630858 ID=Msa0401500-mRNA-1:exon:5698;Parent=Msa0401500-mRNA-1
chr3_2 five_prime_UTR 27631234 27631263 27631234 ID=Msa0401500-mRNA-1:five_prime_utr;Parent=Msa0401500-mRNA-1
chr3_2 CDS 27630858 27631233 27630858 ID=Msa0401500-mRNA-1:cds;Parent=Msa0401500-mRNA-1
chr3_2 CDS 27627200 27627307 27627200 ID=Msa0401500-mRNA-1:cds;Parent=Msa0401500-mRNA-1
chr3_2 CDS 27626619 27626893 27626619 ID=Msa0401500-mRNA-1:cds;Parent=Msa0401500-mRNA-1
chr3_2 CDS 27624259 27624516 27624259 ID=Msa0401500-mRNA-1:cds;Parent=Msa0401500-mRNA-1
chr3_2 CDS 27623536 27623744 27623536 ID=Msa0401500-mRNA-1:cds;Parent=Msa0401500-mRNA-1
chr3_2 CDS 27623407 27623440 27623407 ID=Msa0401500-mRNA-1:cds;Parent=Msa0401500-mRNA-1
chr3_2 CDS 27622398 27622559 27622398 ID=Msa0401500-mRNA-1:cds;Parent=Msa0401500-mRNA-1
Gene Sequence

>Msa0401500

ATGAGCAAACCAAGTTCTTCATTGGTTCATCTATCCATTCTCATTATAACTCTCTTTGTGGCTGAAATCCATGGAAGCAAACAAAGTAGAGCTCTTACCAAACTACAAAAGTCCAAGTACAATATAAATTCAAAAATTGATAAAAGTCACTTTAAGATACATGAGAATATTGTGCTTGATGCAATGGTTCATTCTCAAGATGGTATGAAAGAGAAAGACAAAATTGAGAAGCTACCAGGGCAACCAAATGTGAAATTCTCTCAATATGGAGGGTATGTTACAGTGGACAAAATAGCTGGACGTGCCTTTTACTATTACTTTGTGGAAGCTCATCATTCTAAAGAAACATTGCCTCTTCTTCTTTGGCTCAATGGAGGTCCTGGATGCTCATCTCTTGCCTATGGAGCAATGCAAGAAGTTGGACCCTTCCGTGTGAAGAGTAATGGGAAAACCCTTCACAAAAATAACTATTCATGGAACTATGCTGCAAATTTGTTGTTCCTTGAGTCCCCAGCTGGGGTAGGATATTCATACTCAAATAGATCATCTGATTATGACACCAATGGAGATAGAAGAACAGCTGCAGATAACTATGTTTTTTTAGTGAATTGGTTAGAGAGATTTCCTGAATATAAGAATAGAGATTTCTACATTGCTGGAGAAAGCTATGCTGGTCATTATGTCCCTCAACTTGCACACAATATTCTCTACCATAATAAAAAGGCTAATAGGACAATTATCAACCTCAAAGGAATTATGATTGGGAATGCAGTGATCAATGATGACACAGATGAGCAAGGAATGTACGATTTTCTTGCAAGTCATGCAATCATATCAGACCAAACAGCATATAATATCAACAAATTTTGTAATTTCTCATCAACTTCCAATCAAACTACTGAGTGCAGTGACGCAGCAAGTGAAGTTGATAAGAACACGTTGTTTCTTGATATATACAACATCTATGCCCCAGTCTGCACTAATCACAACCTCACTAACCGTCCCAAGAAGGTCTCGGATGTTCTTGATCCATGCAGTGACGATTATGTACAAGCATATTTCAACCGGGTTGATGTTCAGGAGGCCCTCCATGCCAATGTCACGAAACTCGAGTATGACTGGGAAGCCTGCAGTACTATCATTCCAAACTGGGGGGACAGTCCTACAACAATCATTCCCCTTTTACATGATCTCCTAAATAATGGATTAAGGGTTTGGATTTTTAGTTGTATGGTCCCTTGTTATTCTGTCAATCTTAGTGTTGCTGGCTATGCCGAAGTATACAAGGGAGGTTTAACTTTTGCCACAGTGAGAGAAGCAGGACATCAAGTACCAAGCTATCAACCAGCAAGAGCCCTCTCTCTAATCATGCATTTCTTAAATGGCACTCCTCTTCCTATTACTCAAAGATTATATGACTAA
Protein sequence

>Msa0401500

MSKPSSSLVHLSILIITLFVAEIHGSKQSRALTKLQKSKYNINSKIDKSHFKIHENIVLDAMVHSQDGMKEKDKIEKLPGQPNVKFSQYGGYVTVDKIAGRAFYYYFVEAHHSKETLPLLLWLNGGPGCSSLAYGAMQEVGPFRVKSNGKTLHKNNYSWNYAANLLFLESPAGVGYSYSNRSSDYDTNGDRRTAADNYVFLVNWLERFPEYKNRDFYIAGESYAGHYVPQLAHNILYHNKKANRTIINLKGIMIGNAVINDDTDEQGMYDFLASHAIISDQTAYNINKFCNFSSTSNQTTECSDAASEVDKNTLFLDIYNIYAPVCTNHNLTNRPKKVSDVLDPCSDDYVQAYFNRVDVQEALHANVTKLEYDWEACSTIIPNWGDSPTTIIPLLHDLLNNGLRVWIFSCMVPCYSVNLSVAGYAEVYKGGLTFATVREAGHQVPSYQPARALSLIMHFLNGTPLPITQRLYD*