AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0787860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0787860 MtrunA17_Chr5g0446131 97.093 516 15 0 1 516 1 516 0.0 1037
Msa0787860 MtrunA17_Chr2g0313751 79.457 516 106 0 1 516 30 545 0.0 867
Msa0787860 MtrunA17_Chr2g0313761 76.163 516 120 1 1 516 1 513 0.0 785
Msa0787860 MtrunA17_Chr2g0307301 69.126 515 159 0 2 516 6 520 0.0 773
Msa0787860 MtrunA17_Chr2g0307291 69.922 512 154 0 5 516 9 520 0.0 768
Msa0787860 MtrunA17_Chr2g0313821 70.841 511 148 1 7 516 8 518 0.0 766
Msa0787860 MtrunA17_Chr2g0313801 70.000 510 152 1 7 515 8 517 0.0 759
Msa0787860 MtrunA17_Chr2g0313781 68.511 524 152 2 5 515 6 529 0.0 747
Msa0787860 MtrunA17_Chr2g0313791 68.945 512 153 2 5 515 6 512 0.0 744
Msa0787860 MtrunA17_Chr2g0313811 70.600 517 139 2 12 515 13 529 0.0 741
Msa0787860 MtrunA17_Chr2g0313831 68.639 507 158 1 10 515 11 517 0.0 736
Msa0787860 MtrunA17_Chr2g0288661 66.277 513 173 0 4 516 8 520 0.0 718
Msa0787860 MtrunA17_Chr2g0313771 58.904 511 202 5 10 514 15 523 0.0 626
Msa0787860 MtrunA17_Chr8g0354511 56.395 516 213 5 7 514 13 524 0.0 590
Msa0787860 MtrunA17_Chr8g0354571 55.447 514 221 4 7 514 13 524 0.0 588
Msa0787860 MtrunA17_Chr8g0354531 54.776 513 225 4 7 514 135 645 0.0 580
Msa0787860 MtrunA17_Chr4g0014051 52.539 512 238 5 6 514 19 528 0.0 569
Msa0787860 MtrunA17_Chr4g0063221 40.600 500 279 6 26 515 29 520 2.91e-130 389
Msa0787860 MtrunA17_Chr7g0262111 39.279 499 284 7 21 514 21 505 6.98e-122 367
Msa0787860 MtrunA17_Chr1g0193811 36.853 502 306 5 20 515 21 517 1.03e-116 354
Msa0787860 MtrunA17_Chr6g0457421 34.682 519 315 9 6 515 5 508 1.19e-104 322
Msa0787860 MtrunA17_Chr7g0215181 34.302 516 315 9 10 516 11 511 4.00e-102 316
Msa0787860 MtrunA17_Chr1g0154731 33.068 502 319 5 17 514 15 503 7.42e-102 315
Msa0787860 MtrunA17_Chr1g0203141 30.645 496 326 7 27 514 30 515 5.91e-93 292
Msa0787860 MtrunA17_Chr1g0203151 31.452 496 318 9 27 514 30 511 6.17e-89 282
Msa0787860 MtrunA17_Chr8g0354561 45.897 329 150 5 7 329 95 401 1.22e-88 278
Msa0787860 MtrunA17_Chr7g0235261 32.465 499 312 7 27 507 12 503 4.93e-87 277
Msa0787860 MtrunA17_Chr8g0354541 67.416 178 58 0 337 514 1 178 2.47e-86 263
Msa0787860 MtrunA17_Chr3g0128461 31.041 509 334 7 16 513 21 523 7.06e-86 274
Msa0787860 MtrunA17_Chr4g0004601 30.874 515 332 8 10 507 17 524 3.39e-84 270
Msa0787860 MtrunA17_Chr6g0479681 29.961 514 319 10 27 514 31 529 2.76e-83 268
Msa0787860 MtrunA17_Chr8g0364081 31.250 512 333 9 22 515 32 542 4.72e-83 268
Msa0787860 MtrunA17_Chr6g0472221 29.644 533 329 11 4 514 18 526 2.99e-81 262
Msa0787860 MtrunA17_Chr8g0336361 28.801 559 338 9 6 514 10 558 1.14e-77 254
Msa0787860 MtrunA17_Chr2g0308651 35.323 402 247 8 126 515 16 416 4.51e-73 238
Msa0787860 MtrunA17_Chr8g0362731 34.031 382 242 5 132 512 32 404 2.15e-71 233
Msa0787860 MtrunA17_Chr2g0307311 64.912 114 40 0 40 153 9 122 6.55e-46 157
Msa0787860 MtrunA17_Chr2g0307321 69.892 93 28 0 164 256 1 93 1.10e-40 142
Msa0787860 MtrunA17_Chr1g0179811 26.807 429 263 14 90 489 108 514 1.93e-38 147
Msa0787860 MtrunA17_Chr5g0396521 26.932 453 263 15 90 487 103 542 2.22e-38 148
Msa0787860 MtrunA17_Chr6g0472161 27.778 360 244 8 22 374 22 372 5.39e-36 137
Msa0787860 MtrunA17_Chr6g0472171 35.507 138 89 0 377 514 21 158 5.09e-35 128
Msa0787860 MtrunA17_Chr1g0182861 36.957 138 87 0 377 514 26 163 8.94e-35 128
Msa0787860 MtrunA17_Chr0c19g0493771 25.740 439 272 14 90 500 218 630 1.75e-34 137
Msa0787860 MtrunA17_Chr3g0108651 43.269 104 59 0 399 502 1 104 3.74e-25 100
Msa0787860 MtrunA17_Chr3g0116741 25.627 359 243 10 142 489 140 485 9.99e-23 101
Msa0787860 MtrunA17_Chr7g0248991 25.705 319 205 10 136 438 49 351 1.41e-22 99.4
Msa0787860 MtrunA17_Chr4g0058231 21.860 430 299 13 83 487 52 469 1.96e-22 100
Msa0787860 MtrunA17_Chr5g0403351 22.062 417 293 11 90 487 68 471 4.78e-22 99.4
Msa0787860 MtrunA17_Chr3g0101711 22.751 378 271 11 142 510 127 492 5.31e-22 99.4
Msa0787860 MtrunA17_Chr1g0164321 23.210 461 291 16 97 513 105 546 1.26e-21 98.2
Msa0787860 MtrunA17_Chr3g0101691 25.281 356 246 11 142 487 128 473 1.44e-21 97.8
Msa0787860 MtrunA17_Chr1g0182871 25.397 252 163 6 136 378 27 262 5.04e-21 92.8
Msa0787860 MtrunA17_Chr1g0162811 24.641 418 283 13 87 487 66 468 8.52e-21 95.5
Msa0787860 MtrunA17_Chr6g0449331 22.991 448 307 15 97 513 74 514 8.67e-21 95.5
Msa0787860 MtrunA17_Chr3g0101631 23.342 377 259 13 123 487 106 464 8.86e-21 95.5
Msa0787860 MtrunA17_Chr5g0403331 21.910 356 258 8 142 487 127 472 1.05e-20 95.1
Msa0787860 MtrunA17_Chr4g0038271 21.749 446 309 13 98 513 124 559 1.28e-20 95.1
Msa0787860 MtrunA17_Chr1g0184421 25.500 400 248 15 132 509 118 489 2.38e-20 94.0
Msa0787860 MtrunA17_Chr5g0445461 22.727 418 295 16 90 493 71 474 2.55e-20 94.0
Msa0787860 MtrunA17_Chr3g0119681 24.601 439 274 17 98 498 80 499 3.26e-20 94.0
Msa0787860 MtrunA17_Chr8g0351391 23.349 424 265 17 101 488 85 484 4.03e-20 93.6
Msa0787860 MtrunA17_Chr3g0101731 21.944 360 261 10 137 487 121 469 4.44e-20 93.2
Msa0787860 MtrunA17_Chr3g0101701 24.156 385 257 14 142 510 128 493 5.03e-20 93.2
Msa0787860 MtrunA17_Chr5g0405001 25.083 303 206 9 199 487 186 481 8.67e-20 92.4
Msa0787860 MtrunA17_Chr4g0047641 21.801 422 298 13 90 492 81 489 1.82e-19 91.7
Msa0787860 MtrunA17_Chr5g0446161 23.315 356 257 9 142 493 131 474 1.90e-19 91.3
Msa0787860 MtrunA17_Chr4g0052851 24.279 416 272 17 85 483 59 448 2.38e-19 90.9
Msa0787860 MtrunA17_Chr7g0218611 25.503 298 207 7 197 486 177 467 2.91e-19 90.9
Msa0787860 MtrunA17_Chr1g0204271 22.749 422 271 16 101 488 79 479 3.56e-19 90.5
Msa0787860 MtrunA17_Chr4g0058191 23.841 302 213 7 197 490 169 461 5.12e-19 90.1
Msa0787860 MtrunA17_Chr7g0260831 22.811 434 283 16 99 504 81 490 5.73e-19 89.7
Msa0787860 MtrunA17_Chr5g0445381 23.908 435 289 20 75 487 85 499 6.65e-19 89.7
Msa0787860 MtrunA17_Chr4g0020041 22.118 425 287 16 87 487 66 470 7.06e-19 89.7
Msa0787860 MtrunA17_Chr3g0101571 25.974 308 206 9 191 487 171 467 7.41e-19 89.4
Msa0787860 MtrunA17_Chr5g0445421 22.482 427 284 14 75 487 128 521 7.83e-19 89.7
Msa0787860 MtrunA17_Chr1g0163391 22.601 469 297 19 87 513 57 501 9.64e-19 89.4
Msa0787860 MtrunA17_Chr8g0351311 23.202 431 258 18 101 488 85 485 1.25e-18 89.0
Msa0787860 MtrunA17_Chr6g0484811 22.778 360 262 11 142 492 126 478 1.30e-18 89.0
Msa0787860 MtrunA17_Chr4g0004481 22.782 417 274 14 124 514 98 492 1.46e-18 88.6
Msa0787860 MtrunA17_Chr8g0351401 23.990 396 248 15 125 487 107 482 2.31e-18 88.2
Msa0787860 MtrunA17_Chr5g0445441 22.779 439 301 17 75 493 95 515 2.54e-18 88.2
Msa0787860 MtrunA17_Chr7g0227281 22.222 459 313 17 82 513 52 493 2.55e-18 87.8
Msa0787860 MtrunA17_Chr5g0419451 22.864 398 271 14 104 483 105 484 3.33e-18 87.4
Msa0787860 MtrunA17_Chr4g0047631 22.328 421 294 14 90 492 80 485 3.37e-18 87.4
Msa0787860 MtrunA17_Chr4g0035921 21.988 332 243 6 171 487 151 481 3.68e-18 87.4
Msa0787860 MtrunA17_Chr5g0403321 22.438 361 253 11 142 487 126 474 4.27e-18 87.0
Msa0787860 MtrunA17_Chr4g0058281 22.590 363 248 12 142 487 135 481 4.41e-18 87.0
Msa0787860 MtrunA17_Chr6g0458561 22.482 427 285 15 90 487 88 497 4.57e-18 87.0
Msa0787860 MtrunA17_Chr1g0174441 26.349 315 204 10 191 487 193 497 5.10e-18 87.0
Msa0787860 MtrunA17_Chr7g0224561 25.949 316 198 11 191 485 168 468 5.94e-18 86.7
Msa0787860 MtrunA17_Chr3g0101721 21.629 356 258 9 142 487 127 471 7.96e-18 86.3
Msa0787860 MtrunA17_Chr3g0101601 23.097 381 262 13 123 490 106 468 8.18e-18 86.3
Msa0787860 MtrunA17_Chr5g0446151 23.315 356 258 8 142 493 131 475 8.53e-18 86.3
Msa0787860 MtrunA17_Chr4g0017411 23.971 413 277 16 85 483 56 445 9.92e-18 85.9
Msa0787860 MtrunA17_Chr3g0101621 22.487 378 265 13 123 490 103 462 1.10e-17 85.9
Msa0787860 MtrunA17_Chr6g0465511 23.971 413 262 17 104 487 80 469 1.38e-17 85.5
Msa0787860 MtrunA17_Chr4g0047691 22.066 426 293 14 83 487 76 483 1.40e-17 85.5
Msa0787860 MtrunA17_Chr4g0011981 24.915 293 203 8 204 487 180 464 1.49e-17 85.5
Msa0787860 MtrunA17_Chr6g0466331 23.971 413 262 17 104 487 80 469 1.60e-17 85.5
Msa0787860 MtrunA17_Chr1g0210091 24.350 423 275 16 69 464 79 483 1.74e-17 85.5
Msa0787860 MtrunA17_Chr7g0246221 22.222 459 301 16 88 516 63 495 2.15e-17 85.1
Msa0787860 MtrunA17_Chr4g0058201 23.377 308 219 7 188 487 162 460 2.31e-17 84.7
Msa0787860 MtrunA17_Chr8g0380501 22.658 459 312 15 82 513 48 490 2.58e-17 84.7
Msa0787860 MtrunA17_Chr8g0377341 23.500 400 278 11 98 483 108 493 2.66e-17 84.7
Msa0787860 MtrunA17_Chr6g0463801 24.451 319 221 10 183 493 165 471 3.14e-17 84.3
Msa0787860 MtrunA17_Chr3g0101671 22.006 359 254 11 142 487 128 473 3.62e-17 84.3
Msa0787860 MtrunA17_Chr8g0361471 23.971 413 262 17 104 487 80 469 3.77e-17 84.3
Msa0787860 MtrunA17_Chr5g0443731 24.317 366 228 15 137 487 115 446 5.21e-17 83.6
Msa0787860 MtrunA17_Chr4g0024771 21.412 425 296 17 84 487 61 468 5.43e-17 83.6
Msa0787860 MtrunA17_Chr5g0443401 22.782 417 266 12 82 483 67 442 6.08e-17 83.6
Msa0787860 MtrunA17_Chr1g0151221 23.608 449 281 15 87 488 67 500 6.18e-17 83.6
Msa0787860 MtrunA17_Chr4g0076161 21.127 355 259 8 142 487 129 471 6.46e-17 83.6
Msa0787860 MtrunA17_Chr6g0449381 20.899 445 310 14 97 513 74 504 6.80e-17 83.6
Msa0787860 MtrunA17_Chr5g0446101 24.333 300 208 8 200 493 1 287 6.84e-17 81.6
Msa0787860 MtrunA17_Chr5g0431501 22.991 448 294 18 77 487 37 470 7.66e-17 83.2
Msa0787860 MtrunA17_Chr5g0431461 22.991 448 294 18 77 487 37 470 7.66e-17 83.2
Msa0787860 MtrunA17_Chr4g0039391 22.249 418 296 12 87 486 63 469 8.30e-17 83.2
Msa0787860 MtrunA17_Chr8g0339331 22.118 425 292 14 90 487 72 484 8.84e-17 83.2
Msa0787860 MtrunA17_Chr5g0431671 21.528 432 313 15 70 487 50 469 1.03e-16 82.8
Msa0787860 MtrunA17_Chr5g0431591 23.390 295 210 10 200 487 1 286 1.09e-16 81.3
Msa0787860 MtrunA17_Chr3g0101661 22.652 362 247 13 142 487 128 472 1.12e-16 82.8
Msa0787860 MtrunA17_Chr3g0135841 24.236 458 272 18 87 488 70 508 1.16e-16 82.8
Msa0787860 MtrunA17_Chr6g0449341 22.545 448 309 15 97 513 122 562 1.28e-16 82.8
Msa0787860 MtrunA17_Chr7g0225531 28.455 246 150 7 252 487 255 484 1.29e-16 82.8
Msa0787860 MtrunA17_Chr8g0390881 23.779 307 217 9 191 487 173 472 1.32e-16 82.4
Msa0787860 MtrunA17_Chr5g0445531 21.516 409 298 13 90 487 71 467 1.37e-16 82.4
Msa0787860 MtrunA17_Chr1g0184461 23.235 439 280 18 98 509 81 489 1.43e-16 82.4
Msa0787860 MtrunA17_Chr5g0445451 22.573 412 291 16 90 487 71 468 1.50e-16 82.4
Msa0787860 MtrunA17_Chr1g0163351 22.511 462 319 16 82 513 52 504 1.77e-16 82.0
Msa0787860 MtrunA17_Chr7g0218601 25.000 304 201 9 197 487 178 467 1.86e-16 82.0
Msa0787860 MtrunA17_Chr6g0463791 23.099 355 250 9 142 487 127 467 2.00e-16 82.0
Msa0787860 MtrunA17_Chr3g0101581 25.868 317 210 12 184 487 166 470 2.46e-16 81.6
Msa0787860 MtrunA17_Chr5g0431641 23.810 294 209 9 200 487 184 468 3.49e-16 81.3
Msa0787860 MtrunA17_Chr4g0056951 22.090 421 273 14 75 464 60 456 3.58e-16 81.3
Msa0787860 MtrunA17_Chr4g0047661 21.583 417 298 15 90 487 79 485 4.18e-16 80.9
Msa0787860 MtrunA17_Chr7g0227291 22.658 459 311 16 82 513 52 493 4.32e-16 80.9
Msa0787860 MtrunA17_Chr4g0058211 27.473 182 129 3 311 490 9 189 4.41e-16 77.4
Msa0787860 MtrunA17_Chr1g0174461 25.559 313 207 10 191 487 173 475 4.49e-16 80.9
Msa0787860 MtrunA17_Chr5g0430031 22.946 353 253 10 145 487 129 472 5.23e-16 80.9
Msa0787860 MtrunA17_Chr7g0265611 24.138 290 208 8 204 488 204 486 5.88e-16 80.5
Msa0787860 MtrunA17_Chr8g0372251 23.588 301 214 9 199 487 177 473 6.10e-16 80.5
Msa0787860 MtrunA17_Chr2g0293421 23.618 398 257 14 98 483 92 454 6.99e-16 80.1
Msa0787860 MtrunA17_Chr8g0380471 27.381 252 161 6 240 487 217 450 8.71e-16 79.7
Msa0787860 MtrunA17_Chr1g0160861 25.781 256 173 8 237 487 63 306 8.79e-16 78.6
Msa0787860 MtrunA17_Chr5g0431511 23.184 358 251 10 143 487 124 470 9.56e-16 79.7
Msa0787860 MtrunA17_Chr5g0395331 25.168 298 203 11 199 487 186 472 1.03e-15 79.7
Msa0787860 MtrunA17_Chr3g0116681 24.415 299 208 10 201 490 185 474 1.08e-15 79.7
Msa0787860 MtrunA17_Chr4g0052861 21.154 416 285 13 90 483 63 457 1.08e-15 79.7
Msa0787860 MtrunA17_Chr5g0395321 22.249 418 286 16 87 487 70 465 1.17e-15 79.7
Msa0787860 MtrunA17_Chr1g0205361 26.016 246 154 9 252 487 238 465 1.40e-15 79.3
Msa0787860 MtrunA17_Chr1g0198191 23.474 426 299 16 82 489 71 487 1.98e-15 79.0
Msa0787860 MtrunA17_Chr8g0390871 26.857 175 126 2 315 487 20 194 2.21e-15 75.9
Msa0787860 MtrunA17_Chr5g0430071 23.986 296 211 7 200 487 36 325 2.51e-15 77.8
Msa0787860 MtrunA17_Chr3g0101811 22.546 377 252 14 137 487 122 484 3.39e-15 78.2
Msa0787860 MtrunA17_Chr1g0205371 23.762 404 259 13 87 464 63 443 3.58e-15 78.2
Msa0787860 MtrunA17_Chr8g0356001 22.129 357 251 9 144 487 132 474 3.71e-15 78.2
Msa0787860 MtrunA17_Chr5g0403451 24.335 263 154 8 283 513 29 278 4.92e-15 75.5
Msa0787860 MtrunA17_Chr3g0101801 21.667 420 296 14 87 487 71 476 8.30e-15 77.0
Msa0787860 MtrunA17_Chr2g0280261 27.476 313 203 9 191 493 170 468 8.69e-15 77.0
Msa0787860 MtrunA17_Chr5g0430081 23.256 301 213 7 197 487 178 470 8.70e-15 77.0
Msa0787860 MtrunA17_Chr1g0163451 26.500 200 136 4 323 513 326 523 1.19e-14 76.6
Msa0787860 MtrunA17_Chr8g0381541 26.271 236 152 8 259 486 241 462 1.33e-14 76.3
Msa0787860 MtrunA17_Chr5g0430091 24.579 297 208 8 200 487 183 472 1.55e-14 76.3
Msa0787860 MtrunA17_Chr8g0362701 25.402 311 203 11 191 483 172 471 1.58e-14 76.3
Msa0787860 MtrunA17_Chr6g0463621 25.389 193 134 5 323 509 2 190 2.21e-14 72.0
Msa0787860 MtrunA17_Chr4g0011901 21.986 423 290 12 88 487 59 464 2.22e-14 75.5
Msa0787860 MtrunA17_Chr1g0197871 24.901 253 176 8 239 487 221 463 2.41e-14 75.5
Msa0787860 MtrunA17_Chr5g0400421 23.940 401 254 15 98 483 92 456 2.52e-14 75.5
Msa0787860 MtrunA17_Chr8g0381571 26.609 233 145 9 259 483 241 455 2.62e-14 75.1
Msa0787860 MtrunA17_Chr1g0197891 25.203 246 171 6 245 487 228 463 2.83e-14 75.1
Msa0787860 MtrunA17_Chr8g0362481 24.194 310 208 10 191 483 103 402 3.08e-14 74.7
Msa0787860 MtrunA17_Chr1g0200951 21.927 301 212 9 196 485 209 497 3.34e-14 75.1
Msa0787860 MtrunA17_Chr1g0197881 25.203 246 171 6 245 487 227 462 4.53e-14 74.7
Msa0787860 MtrunA17_Chr1g0197851 25.610 246 170 7 245 487 228 463 4.53e-14 74.7
Msa0787860 MtrunA17_Chr1g0174451 23.718 312 214 8 191 487 174 476 4.66e-14 74.7
Msa0787860 MtrunA17_Chr8g0387001 22.096 439 289 14 104 509 82 500 5.42e-14 74.3
Msa0787860 MtrunA17_Chr3g0101761 23.511 319 225 9 178 487 161 469 5.99e-14 74.3
Msa0787860 MtrunA17_Chr3g0101651 21.260 381 273 11 142 510 128 493 8.48e-14 73.9
Msa0787860 MtrunA17_Chr4g0057001 21.498 414 283 14 75 464 66 461 8.88e-14 73.9
Msa0787860 MtrunA17_Chr2g0280011 29.688 192 122 7 318 499 5 193 9.44e-14 70.5
Msa0787860 MtrunA17_Chr1g0164211 25.203 246 167 7 247 487 229 462 9.45e-14 73.6
Msa0787860 MtrunA17_Chr1g0156101 22.506 391 261 15 145 508 125 500 1.12e-13 73.6
Msa0787860 MtrunA17_Chr1g0163491 20.759 448 311 14 97 513 86 520 1.33e-13 73.2
Msa0787860 MtrunA17_Chr1g0160851 25.000 256 175 7 237 487 222 465 1.51e-13 72.8
Msa0787860 MtrunA17_Chr7g0214931 24.571 350 219 16 97 416 96 430 2.02e-13 72.4
Msa0787860 MtrunA17_Chr1g0162801 24.769 432 268 17 87 487 66 471 2.18e-13 72.4
Msa0787860 MtrunA17_Chr7g0246151 22.014 427 287 15 89 488 64 471 2.25e-13 72.4
Msa0787860 MtrunA17_Chr5g0400411 23.544 395 256 12 102 483 94 455 2.44e-13 72.4
Msa0787860 MtrunA17_Chr7g0255531 23.077 312 211 9 200 498 178 473 2.47e-13 72.4
Msa0787860 MtrunA17_Chr3g0101831 22.314 363 261 12 135 487 119 470 2.48e-13 72.4
Msa0787860 MtrunA17_Chr1g0200961 24.161 447 305 17 87 514 56 487 2.85e-13 72.0
Msa0787860 MtrunA17_Chr3g0101611 22.482 427 278 17 90 487 69 471 3.21e-13 72.0
Msa0787860 MtrunA17_Chr3g0101821 22.222 306 222 7 191 487 171 469 3.95e-13 71.6
Msa0787860 MtrunA17_Chr1g0163461 26.000 200 137 4 323 513 321 518 4.61e-13 71.6
Msa0787860 MtrunA17_Chr1g0163211 27.660 188 122 5 324 506 315 493 5.10e-13 71.2
Msa0787860 MtrunA17_Chr4g0011961 22.408 299 216 11 197 487 173 463 5.57e-13 71.2
Msa0787860 MtrunA17_Chr8g0334941 22.561 328 212 10 174 487 2 301 7.30e-13 69.7
Msa0787860 MtrunA17_Chr1g0167321 23.714 447 295 16 87 509 63 487 8.08e-13 70.9
Msa0787860 MtrunA17_Chr5g0430101 21.122 303 227 7 191 487 173 469 9.39e-13 70.5
Msa0787860 MtrunA17_Chr8g0339311 23.511 319 212 10 186 483 181 488 1.15e-12 70.1
Msa0787860 MtrunA17_Chr1g0163421 24.500 200 140 4 323 513 342 539 1.22e-12 70.1
Msa0787860 MtrunA17_Chr5g0430131 23.129 294 215 7 200 487 183 471 1.35e-12 70.1
Msa0787860 MtrunA17_Chr2g0280081 21.379 435 312 13 81 494 55 480 1.46e-12 70.5
Msa0787860 MtrunA17_Chr2g0280081 22.989 261 187 6 236 487 720 975 1.91e-12 70.1
Msa0787860 MtrunA17_Chr6g0451751 21.519 316 222 9 185 483 183 489 1.79e-12 69.7
Msa0787860 MtrunA17_Chr1g0153371 22.595 447 294 12 65 487 25 443 2.04e-12 69.3
Msa0787860 MtrunA17_Chr8g0344181 23.349 424 287 14 87 487 66 474 2.57e-12 69.3
Msa0787860 MtrunA17_Chr4g0008101 23.077 429 284 16 90 483 72 489 2.64e-12 69.3
Msa0787860 MtrunA17_Chr8g0387101 27.957 186 123 5 312 487 292 476 2.69e-12 68.9
Msa0787860 MtrunA17_Chr3g0101751 22.977 309 216 8 191 487 178 476 2.71e-12 68.9
Msa0787860 MtrunA17_Chr2g0334021 26.296 270 176 8 223 487 219 470 2.86e-12 68.9
Msa0787860 MtrunA17_Chr6g0466901 22.423 388 262 16 127 488 111 485 2.90e-12 68.9
Msa0787860 MtrunA17_Chr3g0101741 20.345 290 213 6 204 487 114 391 3.38e-12 68.6
Msa0787860 MtrunA17_Chr4g0011921 22.115 312 224 9 186 487 162 464 3.58e-12 68.6
Msa0787860 MtrunA17_Chr8g0364651 25.468 267 163 9 245 488 216 469 4.45e-12 68.2
Msa0787860 MtrunA17_Chr2g0314731 26.316 228 152 9 265 487 249 465 5.62e-12 68.2
Msa0787860 MtrunA17_Chr8g0357421 20.807 322 239 7 174 487 156 469 8.37e-12 67.4
Msa0787860 MtrunA17_Chr3g0101591 27.711 166 117 3 324 487 42 206 1.12e-11 65.1
Msa0787860 MtrunA17_Chr2g0321171 24.691 243 156 7 252 483 240 466 1.23e-11 67.0
Msa0787860 MtrunA17_Chr3g0094231 21.333 300 217 11 196 487 182 470 1.25e-11 67.0
Msa0787860 MtrunA17_Chr2g0280071 28.261 184 122 5 313 487 325 507 1.43e-11 67.0
Msa0787860 MtrunA17_Chr5g0419691 22.259 301 215 8 197 487 173 464 1.46e-11 66.6
Msa0787860 MtrunA17_Chr6g0451681 27.053 207 138 6 288 489 251 449 2.41e-11 65.9
Msa0787860 MtrunA17_Chr5g0429651 22.637 402 256 17 123 493 108 485 2.54e-11 65.9
Msa0787860 MtrunA17_Chr2g0280121 21.024 371 272 9 138 494 123 486 3.01e-11 65.9
Msa0787860 MtrunA17_Chr2g0280061 28.646 192 124 7 318 499 5 193 3.71e-11 62.8
Msa0787860 MtrunA17_Chr7g0254641 20.984 305 216 10 196 484 184 479 3.85e-11 65.5
Msa0787860 MtrunA17_Chr4g0011871 21.598 463 305 17 65 487 21 465 3.92e-11 65.5
Msa0787860 MtrunA17_Chr8g0344151 23.948 309 204 11 197 487 177 472 4.14e-11 65.5
Msa0787860 MtrunA17_Chr1g0183611 25.668 187 128 4 324 501 228 412 4.32e-11 65.1
Msa0787860 MtrunA17_Chr8g0357431 23.662 355 251 11 142 487 127 470 6.15e-11 64.7
Msa0787860 MtrunA17_Chr5g0401691 22.191 356 252 10 137 483 135 474 7.75e-11 64.3
Msa0787860 MtrunA17_Chr6g0469321 37.662 77 44 2 309 384 14 87 9.51e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0787860 AT3G14690.1 54.247 518 227 5 1 514 1 512 0.0 602
Msa0787860 AT3G14690.2 54.247 518 227 5 1 514 36 547 0.0 601
Msa0787860 AT3G14610.1 56.400 500 209 5 18 514 19 512 0.0 592
Msa0787860 AT3G14660.1 55.847 496 211 4 21 514 23 512 0.0 584
Msa0787860 AT3G14680.1 55.444 496 213 3 21 514 23 512 0.0 583
Msa0787860 AT3G14650.1 55.444 496 213 4 21 514 23 512 0.0 582
Msa0787860 AT3G14640.1 55.422 498 212 5 21 514 23 514 0.0 579
Msa0787860 AT3G14640.2 55.422 498 212 5 21 514 45 536 0.0 579
Msa0787860 AT3G14620.1 55.689 501 209 6 18 514 24 515 0.0 570
Msa0787860 AT3G14630.2 53.620 511 225 6 10 514 59 563 0.0 566
Msa0787860 AT3G14630.1 53.620 511 225 6 10 514 4 508 0.0 565
Msa0787860 AT3G14660.2 57.102 352 144 3 164 514 21 366 2.73e-147 427
Msa0787860 AT2G26710.1 40.762 525 286 7 2 514 4 515 7.31e-145 426
Msa0787860 AT3G14660.3 51.541 357 165 4 21 375 23 373 1.62e-129 382
Msa0787860 AT1G75130.1 37.223 497 292 7 26 516 23 505 6.42e-114 347
Msa0787860 AT2G46960.2 37.255 510 293 11 19 515 23 518 3.14e-112 343
Msa0787860 AT4G27710.1 36.329 523 318 6 1 514 1 517 7.21e-112 342
Msa0787860 AT2G46950.1 36.779 503 301 8 19 515 80 571 5.18e-110 338
Msa0787860 AT5G38450.1 34.757 515 324 7 6 514 8 516 1.96e-94 296
Msa0787860 AT2G46960.1 38.293 410 231 8 117 515 4 402 1.00e-91 286
Msa0787860 AT5G52400.1 30.989 526 333 11 3 514 10 519 7.61e-91 287
Msa0787860 AT5G24910.1 32.836 536 316 11 6 513 13 532 2.19e-89 284
Msa0787860 AT1G67110.1 33.204 515 325 7 7 515 10 511 3.10e-88 280
Msa0787860 AT5G24900.1 31.643 493 315 7 32 509 37 522 3.10e-86 276
Msa0787860 AT5G24900.2 34.896 384 240 4 132 509 26 405 7.65e-77 248
Msa0787860 AT1G17060.1 40.357 280 157 3 11 284 15 290 5.10e-72 232
Msa0787860 AT2G46950.2 34.807 362 219 8 19 374 80 430 3.84e-62 210
Msa0787860 AT4G27710.2 33.613 357 220 6 6 355 11 357 2.32e-59 201
Msa0787860 AT5G38450.2 30.548 383 257 5 6 382 8 387 5.60e-46 166
Msa0787860 AT1G67110.2 30.481 374 244 6 7 374 10 373 1.39e-40 150
Msa0787860 AT5G24910.2 27.384 409 254 10 6 387 13 405 1.56e-40 151
Msa0787860 AT3G53130.1 26.526 426 268 12 90 489 108 514 9.46e-38 146
Msa0787860 AT1G31800.1 26.279 430 264 13 90 490 139 544 7.93e-36 141
Msa0787860 AT4G15110.1 26.457 446 275 16 90 487 110 550 5.11e-33 133
Msa0787860 AT3G26125.1 24.454 458 301 14 96 515 85 535 8.48e-29 120
Msa0787860 AT3G48310.1 22.276 413 296 9 90 491 63 461 1.32e-25 110
Msa0787860 AT1G13140.1 22.523 444 309 12 96 511 85 521 1.42e-25 110
Msa0787860 AT1G13150.1 24.558 452 300 16 96 515 78 520 3.84e-25 109
Msa0787860 AT2G30770.1 27.759 299 194 8 199 487 178 464 1.65e-24 107
Msa0787860 AT1G57750.1 26.067 445 279 15 97 513 73 495 3.96e-24 105
Msa0787860 AT1G24540.1 23.251 443 308 14 96 512 82 518 4.57e-24 105
Msa0787860 AT3G48300.1 23.040 421 294 13 78 486 51 453 4.75e-24 105
Msa0787860 AT3G48300.2 23.040 421 294 13 78 486 53 455 4.82e-24 105
Msa0787860 AT3G48270.1 23.317 416 282 12 90 488 62 457 9.61e-24 104
Msa0787860 AT1G13080.1 23.823 361 249 12 142 487 120 469 4.96e-23 102
Msa0787860 AT1G13140.2 21.968 437 294 11 96 511 85 495 5.67e-23 102
Msa0787860 AT5G23190.1 22.991 448 299 14 97 511 103 537 2.50e-22 100
Msa0787860 AT3G48280.1 26.646 319 214 9 197 508 171 476 2.53e-22 100
Msa0787860 AT1G13080.2 24.116 311 213 10 191 487 50 351 3.99e-22 98.6
Msa0787860 AT3G48290.1 24.455 413 279 13 90 487 64 458 3.01e-21 97.1
Msa0787860 AT1G11610.1 24.882 422 278 15 90 490 64 467 3.18e-21 97.1
Msa0787860 AT1G11610.2 24.824 427 272 16 90 490 64 467 3.51e-21 97.1
Msa0787860 AT2G30750.1 28.470 281 179 9 199 469 178 446 6.08e-20 93.2
Msa0787860 AT2G21910.1 24.215 446 297 16 97 513 72 505 9.73e-20 92.8
Msa0787860 AT2G45510.1 22.249 418 281 12 101 488 78 481 1.38e-19 92.4
Msa0787860 AT2G44890.1 21.687 415 287 11 101 488 78 481 1.78e-19 92.0
Msa0787860 AT3G26230.1 23.248 314 215 10 191 487 163 467 2.12e-19 91.7
Msa0787860 AT5G52320.1 23.516 455 285 17 97 514 74 502 4.11e-19 90.9
Msa0787860 AT5G08250.1 22.146 438 292 15 97 501 42 463 5.35e-19 90.1
Msa0787860 AT5G24950.1 22.464 414 293 13 90 487 63 464 8.15e-19 89.7
Msa0787860 AT5G08250.2 22.146 438 292 15 97 501 104 525 9.93e-19 89.7
Msa0787860 AT3G26160.1 22.014 427 296 13 91 493 62 475 1.03e-18 89.4
Msa0787860 AT5G52320.2 23.714 447 278 17 97 506 74 494 1.42e-18 89.0
Msa0787860 AT3G48320.1 23.932 351 248 7 142 487 121 457 2.10e-18 88.6
Msa0787860 AT3G26150.1 22.326 430 291 15 91 493 62 475 2.68e-18 88.2
Msa0787860 AT3G48290.2 23.202 431 288 13 90 487 64 484 3.57e-18 87.8
Msa0787860 AT2G26170.1 23.414 457 289 17 87 506 73 505 4.54e-18 87.4
Msa0787860 AT5G63450.1 26.027 438 273 20 98 509 79 491 4.76e-18 87.4
Msa0787860 AT1G69500.1 24.036 441 263 18 106 489 73 498 5.27e-18 87.4
Msa0787860 AT2G44890.2 21.308 413 273 11 101 488 78 463 5.39e-18 87.4
Msa0787860 AT5G63450.2 26.027 438 273 20 98 509 137 549 5.65e-18 87.4
Msa0787860 AT5G04330.1 24.251 334 229 9 171 487 146 472 5.95e-18 87.0
Msa0787860 AT5G09970.1 22.983 409 275 15 98 483 111 502 6.96e-18 87.0
Msa0787860 AT3G10560.1 24.122 427 279 18 82 483 72 478 1.53e-17 85.9
Msa0787860 AT3G26210.1 21.853 421 296 15 88 487 60 468 1.70e-17 85.9
Msa0787860 AT3G26830.1 20.471 425 301 16 87 488 56 466 2.04e-17 85.5
Msa0787860 AT2G23180.1 22.707 458 291 17 98 513 75 511 3.28e-17 84.7
Msa0787860 AT4G13310.1 23.022 417 288 13 90 487 63 465 4.09e-17 84.3
Msa0787860 AT2G26170.2 23.371 445 280 17 99 506 2 422 4.74e-17 84.0
Msa0787860 AT5G02900.1 30.542 203 128 6 321 513 279 478 5.15e-17 84.0
Msa0787860 AT1G13090.2 22.928 362 250 12 142 487 117 465 5.60e-17 84.0
Msa0787860 AT4G36220.1 23.754 341 225 11 171 487 154 483 8.23e-17 83.6
Msa0787860 AT4G31500.1 22.093 344 245 8 156 487 134 466 8.26e-17 83.6
Msa0787860 AT1G13100.1 22.010 418 298 14 90 487 56 465 1.06e-16 83.2
Msa0787860 AT5G44620.1 22.549 408 288 15 75 464 62 459 1.18e-16 83.2
Msa0787860 AT4G37400.1 24.048 420 278 16 88 486 60 459 1.28e-16 83.2
Msa0787860 AT4G32170.1 29.703 202 128 5 321 513 306 502 1.34e-16 82.8
Msa0787860 AT4G13290.1 22.434 419 280 12 90 487 64 458 3.61e-16 81.6
Msa0787860 AT4G39510.1 28.643 199 134 4 321 513 308 504 3.83e-16 81.6
Msa0787860 AT3G26310.1 25.168 298 204 9 200 487 176 464 4.38e-16 81.3
Msa0787860 AT3G48520.1 24.208 442 276 18 98 509 76 488 4.67e-16 81.3
Msa0787860 AT5G24960.1 24.172 302 204 9 203 492 182 470 5.37e-16 80.9
Msa0787860 AT3G26300.1 22.512 422 289 14 88 487 60 465 8.09e-16 80.5
Msa0787860 AT2G42850.1 23.210 461 297 15 52 503 56 468 9.20e-16 80.1
Msa0787860 AT4G39500.1 29.293 198 133 5 321 513 270 465 1.16e-15 79.7
Msa0787860 AT2G27690.1 23.000 400 273 11 104 483 76 460 1.43e-15 79.7
Msa0787860 AT3G25180.1 22.673 419 288 13 90 486 72 476 1.47e-15 79.7
Msa0787860 AT4G39500.2 29.293 198 133 5 321 513 320 515 2.17e-15 79.3
Msa0787860 AT3G10570.1 25.877 228 157 8 268 489 263 484 2.23e-15 79.3
Msa0787860 AT5G04630.1 23.235 439 300 21 82 497 64 488 4.14e-15 78.2
Msa0787860 AT1G65340.1 26.500 200 135 5 321 514 310 503 6.86e-15 77.8
Msa0787860 AT2G24180.1 21.752 331 239 8 191 510 173 494 7.84e-15 77.4
Msa0787860 AT1G66540.1 24.036 337 219 12 167 486 29 345 9.04e-15 76.6
Msa0787860 AT3G26270.1 21.028 428 292 14 88 487 61 470 9.39e-15 77.0
Msa0787860 AT4G39490.1 22.588 456 299 17 98 513 74 515 1.01e-14 77.0
Msa0787860 AT1G13110.1 20.670 358 259 11 142 484 121 468 1.08e-14 77.0
Msa0787860 AT5G10610.1 22.566 452 294 20 83 509 57 477 1.39e-14 76.6
Msa0787860 AT3G20950.1 25.806 310 199 10 191 483 184 479 1.53e-14 76.6
Msa0787860 AT1G34540.1 22.464 414 281 15 99 487 72 470 1.61e-14 76.3
Msa0787860 AT5G25140.1 22.169 415 293 13 90 487 60 461 1.66e-14 76.3
Msa0787860 AT5G04660.1 22.075 453 313 16 82 512 67 501 1.89e-14 76.3
Msa0787860 AT3G26190.1 20.536 448 316 14 90 514 59 489 2.98e-14 75.5
Msa0787860 AT1G01280.1 20.764 419 298 13 90 483 63 472 3.44e-14 75.5
Msa0787860 AT4G37410.1 22.249 418 280 16 89 483 61 456 5.76e-14 74.7
Msa0787860 AT1G66540.2 23.333 300 202 9 197 486 5 286 6.60e-14 73.2
Msa0787860 AT5G36220.1 21.703 364 248 11 137 486 124 464 9.31e-14 73.9
Msa0787860 AT1G47620.1 26.500 200 138 4 321 513 317 514 1.32e-13 73.6
Msa0787860 AT4G20240.1 23.280 378 238 12 90 440 64 416 1.67e-13 73.2
Msa0787860 AT4G15360.1 22.222 306 222 7 191 487 178 476 2.89e-13 72.8
Msa0787860 AT4G19230.1 21.429 462 290 16 81 513 44 461 3.15e-13 72.4
Msa0787860 AT1G64940.1 23.345 287 202 7 217 486 193 478 3.94e-13 72.0
Msa0787860 AT4G37370.1 22.888 367 240 14 137 486 117 457 4.09e-13 72.0
Msa0787860 AT1G63710.1 25.366 205 141 2 321 513 302 506 6.01e-13 71.6
Msa0787860 AT4G19230.2 22.222 414 267 15 82 484 60 429 6.77e-13 71.2
Msa0787860 AT1G55940.1 24.590 244 165 6 245 482 228 458 7.51e-13 71.2
Msa0787860 AT1G55940.2 24.590 244 165 6 245 482 228 458 7.91e-13 71.2
Msa0787860 AT4G22690.1 24.129 402 265 16 90 468 116 500 1.29e-12 70.5
Msa0787860 AT5G06900.1 21.226 424 296 14 85 487 59 465 1.30e-12 70.5
Msa0787860 AT3G20935.1 23.569 297 190 8 216 483 13 301 1.32e-12 69.7
Msa0787860 AT5G36220.2 21.569 306 211 8 191 486 32 318 1.38e-12 69.7
Msa0787860 AT4G37320.1 24.176 364 239 14 137 486 118 458 2.44e-12 69.7
Msa0787860 AT5G25120.1 23.684 304 205 7 197 487 172 461 2.67e-12 69.3
Msa0787860 AT4G22710.1 23.990 396 261 16 96 468 91 469 5.39e-12 68.6
Msa0787860 AT4G15396.1 24.454 229 144 9 270 484 227 440 5.45e-12 68.6
Msa0787860 AT4G15396.3 24.454 229 144 9 270 484 227 440 6.57e-12 68.2
Msa0787860 AT1G64930.1 23.913 184 133 4 309 486 296 478 8.27e-12 67.8
Msa0787860 AT3G26200.1 20.950 358 263 11 142 487 117 466 9.22e-12 67.8
Msa0787860 AT4G37310.1 21.016 433 302 15 78 486 54 470 9.73e-12 67.8
Msa0787860 AT2G45580.2 26.347 167 121 2 322 487 157 322 9.80e-12 67.0
Msa0787860 AT1G28430.1 22.000 300 213 9 200 487 187 477 1.14e-11 67.4
Msa0787860 AT1G13710.1 21.000 400 281 14 104 483 96 480 1.16e-11 67.4
Msa0787860 AT4G15330.2 23.837 172 126 3 321 488 276 446 1.45e-11 67.0
Msa0787860 AT4G15310.1 25.837 209 135 6 281 484 249 442 1.45e-11 67.0
Msa0787860 AT3G20140.1 21.753 308 218 9 191 487 180 475 1.49e-11 67.0
Msa0787860 AT1G12740.4 21.780 427 289 13 76 486 53 450 1.54e-11 67.0
Msa0787860 AT2G45580.1 26.347 167 121 2 322 487 311 476 1.55e-11 67.0
Msa0787860 AT4G15330.1 23.837 172 126 3 321 488 304 474 1.80e-11 67.0
Msa0787860 AT4G12310.1 22.698 467 313 20 75 516 60 503 1.90e-11 67.0
Msa0787860 AT3G26220.1 22.222 315 219 8 191 488 166 471 2.82e-11 66.2
Msa0787860 AT4G15393.2 26.009 223 142 7 270 482 227 436 3.01e-11 66.2
Msa0787860 AT5G42590.1 21.934 424 283 13 90 487 63 464 3.67e-11 65.9
Msa0787860 AT5G67310.1 20.000 415 287 15 94 486 78 469 3.81e-11 65.9
Msa0787860 AT5G57220.1 21.412 425 274 17 90 486 61 453 4.89e-11 65.5
Msa0787860 AT3G20940.1 23.473 311 206 9 191 483 180 476 5.58e-11 65.5
Msa0787860 AT2G28860.1 22.590 363 233 14 142 486 127 459 6.80e-11 65.1
Msa0787860 AT1G11600.1 23.891 293 182 9 220 501 232 494 7.53e-11 65.1
Msa0787860 AT3G61880.1 23.320 253 151 8 250 490 280 501 8.57e-11 64.7

Find 114 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGCCTTCCCTTCAGAATT+TGG 0.171134 5_2:-74033533 Msa0787860:CDS
TCCATTTCTCTGTTTGTAAT+TGG 0.176071 5_2:+74036014 None:intergenic
AATAGGAGGATTAATGAAAT+TGG 0.205642 5_2:-74033230 Msa0787860:CDS
GCAATGATTTAATTAGAAAA+TGG 0.211121 5_2:-74033597 Msa0787860:CDS
AACAGCTTCTCTAGCTTCTT+TGG 0.214282 5_2:+74035909 None:intergenic
ATTCCTCCAGAAAATCTTTC+AGG 0.221298 5_2:+74031943 None:intergenic
TGCACCATGATTGTGAATTA+TGG 0.225322 5_2:-74031990 Msa0787860:CDS
CTACTTCAACTTTACTTGTT+TGG 0.238479 5_2:-74032998 Msa0787860:CDS
GTTTCGCGAAAGCTCAATTA+TGG 0.250531 5_2:+74032086 None:intergenic
TCATATTATTCTGCGTAAAT+TGG 0.261176 5_2:-74031725 Msa0787860:CDS
TCATGGTGCAACAATATAAT+TGG 0.263625 5_2:+74032003 None:intergenic
TTATTTAGCCCATCAAAATT+TGG 0.263674 5_2:+74032894 None:intergenic
TGCAAGTTGTTCTACTTTGC+AGG 0.275508 5_2:-74033029 Msa0787860:CDS
TTGTGACGCTTGGTTTGATA+TGG 0.276438 5_2:-74035965 Msa0787860:CDS
GAAAATAAGAATGACTTATT+AGG 0.284202 5_2:-74033140 Msa0787860:CDS
AACTCTACCGTTCGTTGCTT+TGG 0.302769 5_2:+74031918 None:intergenic
CAAAAGGGTGAAAATATTAA+AGG 0.308079 5_2:-74033171 Msa0787860:CDS
GAGGAAGTATTACAAATCTT+TGG 0.316129 5_2:-74032927 Msa0787860:CDS
TCTCCATACAAAATCCTATA+TGG 0.323570 5_2:+74035861 None:intergenic
GTTATTTCTCGAACAACATT+TGG 0.349051 5_2:-74033502 Msa0787860:CDS
CAATGATTTAATTAGAAAAT+GGG 0.357344 5_2:-74033596 Msa0787860:CDS
TTGCAGGTTTGTACCTACTA+TGG 0.359334 5_2:-74033255 Msa0787860:intron
CAACACAATGTTAAAATTCA+TGG 0.363907 5_2:-74035747 Msa0787860:intron
GAATATTGAAGATGTAATTC+AGG 0.371272 5_2:-74033054 Msa0787860:CDS
ACCAATTACAAACAGAGAAA+TGG 0.372065 5_2:-74036015 Msa0787860:exon
CTTGCCCTTGCTTGCCACTC+AGG 0.379083 5_2:+74032951 None:intergenic
TTCTCTATTGGAAGCAAAGA+TGG 0.382599 5_2:-74031845 Msa0787860:CDS
TTTAACATTGTGTTGGATGT+AGG 0.388508 5_2:+74035755 None:intergenic
TATATCATCGGTGAGATTCA+TGG 0.389863 5_2:+74035794 None:intergenic
AAAAGTGGAGCAAGCATAGA+AGG 0.399835 5_2:-74033883 Msa0787860:CDS
ATTTCTCTGTTTGTAATTGG+TGG 0.401543 5_2:+74036017 None:intergenic
GCACCATGATTGTGAATTAT+GGG 0.407055 5_2:-74031989 Msa0787860:CDS
ATAGGAGGATTAATGAAATT+GGG 0.411585 5_2:-74033229 Msa0787860:CDS
CCACTCCAGCAGATAATGTT+AGG 0.418409 5_2:+74032037 None:intergenic
TTTCTCTGTTTGTAATTGGT+GGG 0.420505 5_2:+74036018 None:intergenic
CAAACCAAGCGTCACAATGA+TGG 0.423439 5_2:+74035971 None:intergenic
TTAAGAGAACAAGGTCTTCA+AGG 0.436422 5_2:-74035888 Msa0787860:CDS
TTTCGCGAAAGCTCAATTAT+GGG 0.438226 5_2:+74032087 None:intergenic
TTCCATTTGGATGGGGTCCT+AGG 0.438258 5_2:-74031888 Msa0787860:CDS
TGCTGAATTGGTTGTGGTTG+AGG 0.441437 5_2:-74035932 Msa0787860:CDS
GGGCATGGAGGATGCTGAAT+TGG 0.445072 5_2:-74035944 Msa0787860:CDS
TTTGGAAGTAGTTATGAAGA+AGG 0.447029 5_2:-74033484 Msa0787860:CDS
TTAAGGATATGATCAACAAA+AGG 0.447635 5_2:-74033187 Msa0787860:CDS
TTAACATTGTGTTGGATGTA+GGG 0.447689 5_2:+74035756 None:intergenic
TTGTACCTACTATGGTCAAT+AGG 0.448076 5_2:-74033247 Msa0787860:CDS
TTGCCCTTGCTTGCCACTCA+GGG 0.451750 5_2:+74032952 None:intergenic
CATAAAGGATCTTATTAAGA+TGG 0.454230 5_2:-74035838 Msa0787860:CDS
TGTAATTGGTGGGGCAAAGA+AGG 0.460936 5_2:+74036028 None:intergenic
AGATATAAAATCTTCACTTA+AGG 0.461164 5_2:-74033204 Msa0787860:CDS
TCTATTTCACATGATCCATC+TGG 0.465020 5_2:+74033559 None:intergenic
AATACATCTACGATTTGCTC+AGG 0.469074 5_2:+74033986 None:intergenic
TTCTCTGTTTGTAATTGGTG+GGG 0.469380 5_2:+74036019 None:intergenic
ATTCCCATCATTGTGACGCT+TGG 0.486344 5_2:-74035975 Msa0787860:CDS
GTCTTCAAGGGAATCCATAT+AGG 0.486578 5_2:-74035875 Msa0787860:CDS
TTAAGAGCAATTACTGTGGC+TGG 0.493931 5_2:+74031763 None:intergenic
GATCATGTGAAATAGACATA+TGG 0.501447 5_2:-74033552 Msa0787860:CDS
ATCCTAGGACCCCATCCAAA+TGG 0.501917 5_2:+74031886 None:intergenic
GGATCTTATTAAGATGGAAA+AGG 0.509720 5_2:-74035832 Msa0787860:CDS
GGAGGATGCTGAATTGGTTG+TGG 0.511983 5_2:-74035938 Msa0787860:CDS
CATAACCTCATACAAAATCA+TGG 0.515351 5_2:+74032122 None:intergenic
AACTTTACTTGTTTGGACAA+TGG 0.516866 5_2:-74032991 Msa0787860:CDS
GGACAATGGTATTATTGAGT+AGG 0.517455 5_2:-74032977 Msa0787860:CDS
TGTGACGCTTGGTTTGATAT+GGG 0.517779 5_2:-74035964 Msa0787860:CDS
AAACCAAGCGTCACAATGAT+GGG 0.521180 5_2:+74035972 None:intergenic
TAGTGGTCTTGCAAGTCTTG+AGG 0.522354 5_2:-74033909 Msa0787860:CDS
AGTGGTCTTGCAAGTCTTGA+GGG 0.523272 5_2:-74033908 Msa0787860:CDS
GGTTCTGTGAGAATCACCCT+TGG 0.525245 5_2:+74034007 None:intergenic
CCTAACATTATCTGCTGGAG+TGG 0.533125 5_2:-74032037 Msa0787860:CDS
CTGAGTGGCAAGCAAGGGCA+AGG 0.533809 5_2:-74032950 Msa0787860:CDS
TAAGGATATGATCAACAAAA+GGG 0.535704 5_2:-74033186 Msa0787860:CDS
CGCTTGGTTTGATATGGGCA+TGG 0.537175 5_2:-74035959 Msa0787860:CDS
GCAAGTTGTTCTACTTTGCA+GGG 0.538368 5_2:-74033028 Msa0787860:CDS
CACCCCATAATTCACAATCA+TGG 0.542452 5_2:+74031986 None:intergenic
AACATTATCTGCTGGAGTGG+AGG 0.542694 5_2:-74032034 Msa0787860:CDS
AGTCTTAATTACCTCCATAG+AGG 0.552576 5_2:+74033391 None:intergenic
ACACGGAAACAACGTGAATG+TGG 0.557304 5_2:-74033081 Msa0787860:CDS
CATCACTAGCCAAATTCTGA+AGG 0.557704 5_2:+74033524 None:intergenic
TTAAGATGGAAAAGGAAGCC+AGG 0.557908 5_2:-74035824 Msa0787860:CDS
ATTGCTCTTAAGCCACAATA+CGG 0.558864 5_2:-74031751 Msa0787860:CDS
CAAGTCTTGAGGGAGAAAAG+TGG 0.561871 5_2:-74033898 Msa0787860:CDS
ATCCTCCTATTGACCATAGT+AGG 0.562488 5_2:+74033242 None:intergenic
GGTACCCTGAGTGGCAAGCA+AGG 0.562549 5_2:-74032956 Msa0787860:CDS
TGGGGTCCTAGGATCTGCAT+TGG 0.563202 5_2:-74031877 Msa0787860:CDS
GAGAAGCTGTTAAGAGAACA+AGG 0.565605 5_2:-74035897 Msa0787860:CDS
GGAGACCTAACATTATCTGC+TGG 0.567226 5_2:-74032042 Msa0787860:CDS
GCTGGAGCATGAGCATAGGC+TGG 0.568382 5_2:+74031781 None:intergenic
GTGAAAATATTAAAGGAAGG+TGG 0.568967 5_2:-74033164 Msa0787860:CDS
GAGATTCATGGATTTAGACC+TGG 0.569485 5_2:+74035806 None:intergenic
AGGGTGAAAATATTAAAGGA+AGG 0.573235 5_2:-74033167 Msa0787860:CDS
CTAGCCAAATTCTGAAGGGA+AGG 0.581397 5_2:+74033529 None:intergenic
ATAATATGAGCACCGTATTG+TGG 0.582346 5_2:+74031739 None:intergenic
TACCTACTATGGTCAATAGG+AGG 0.583831 5_2:-74033244 Msa0787860:CDS
ATCACTAGCCAAATTCTGAA+GGG 0.584793 5_2:+74033525 None:intergenic
TAAGAGAACAAGGTCTTCAA+GGG 0.585971 5_2:-74035887 Msa0787860:CDS
GTGGCAAGCAAGGGCAAGGG+AGG 0.589601 5_2:-74032946 Msa0787860:CDS
GAGGAAATGTTGTCTCCAGA+TGG 0.591198 5_2:-74033574 Msa0787860:CDS
TTGGTTTGGAACAAAACCAA+GGG 0.591413 5_2:-74034023 Msa0787860:CDS
CACGGAAACAACGTGAATGT+GGG 0.596449 5_2:-74033080 Msa0787860:CDS
TACACGTGGCGTTATATCAT+CGG 0.596840 5_2:+74035782 None:intergenic
TTACAAACAGAGAAATGGAA+TGG 0.598701 5_2:-74036010 Msa0787860:exon
CGCGAAAGCTCAATTATGGG+AGG 0.599936 5_2:+74032090 None:intergenic
TGAGTGGCAAGCAAGGGCAA+GGG 0.606267 5_2:-74032949 Msa0787860:CDS
TGTGGCTGGAGCATGAGCAT+AGG 0.608845 5_2:+74031777 None:intergenic
TTTGGTTTGGAACAAAACCA+AGG 0.613316 5_2:-74034024 Msa0787860:CDS
TGATTTAATTAGAAAATGGG+AGG 0.627740 5_2:-74033593 Msa0787860:CDS
GTACCCTGAGTGGCAAGCAA+GGG 0.646016 5_2:-74032955 Msa0787860:CDS
GGAATTTCCAAAGCAACGAA+CGG 0.652740 5_2:-74031925 Msa0787860:CDS
CACCATGATTGTGAATTATG+GGG 0.656392 5_2:-74031988 Msa0787860:CDS
GACAAGGAAATTAAAGAACA+CGG 0.701783 5_2:-74033098 Msa0787860:CDS
TCTTCTAGAGACAAACGACA+AGG 0.711893 5_2:-74033114 Msa0787860:CDS
TATTGAGTAGGTACCCTGAG+TGG 0.723660 5_2:-74032965 Msa0787860:CDS
TTGGTTTGATATGGGCATGG+AGG 0.730690 5_2:-74035956 Msa0787860:CDS
TGGATGTAGGGAATTACACG+TGG 0.736158 5_2:+74035768 None:intergenic
TGGCTTAAGAGCAATTACTG+TGG 0.764853 5_2:+74031759 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTAATTAAA+TGG + chr5_2:74033519-74033538 None:intergenic 0.0%
!!! TTTTTTTTTTTTTAATTAAA+TGG + chr5_2:74033519-74033538 None:intergenic 0.0%
!!! TATTTCTGTTTAATATAATT+TGG - chr5_2:74032375-74032394 Msa0787860:intron 10.0%
!! ATTTCTGTTTAATATAATTT+GGG - chr5_2:74032376-74032395 Msa0787860:intron 10.0%
!! GTTTATTTAAATGATTTAAT+TGG + chr5_2:74032484-74032503 None:intergenic 10.0%
!! AATGTTTAATTATGTTATTA+AGG - chr5_2:74032803-74032822 Msa0787860:intron 10.0%
!! ATGTTTAATTATGTTATTAA+GGG - chr5_2:74032804-74032823 Msa0787860:intron 10.0%
!! AAAGATAAAACAAATTAAAT+TGG + chr5_2:74032843-74032862 None:intergenic 10.0%
!!! TAAAAAAAATAAAGTTTGTT+AGG - chr5_2:74032995-74033014 Msa0787860:CDS 10.0%
!!! AAAAAAAATAAAGTTTGTTA+GGG - chr5_2:74032996-74033015 Msa0787860:CDS 10.0%
!!! AAATTTTATGATTATTCTTT+GGG + chr5_2:74033800-74033819 None:intergenic 10.0%
!!! AAAATTTTATGATTATTCTT+TGG + chr5_2:74033801-74033820 None:intergenic 10.0%
!! ATTTCTAAATATTTAGTAAA+GGG + chr5_2:74033932-74033951 None:intergenic 10.0%
!! AATTTCTAAATATTTAGTAA+AGG + chr5_2:74033933-74033952 None:intergenic 10.0%
!!! ATATTTTATTATTTGGTATT+AGG - chr5_2:74035452-74035471 Msa0787860:intron 10.0%
!! ATAAGTCAAAATAATGTATA+TGG - chr5_2:74032160-74032179 Msa0787860:intron 15.0%
!! ATTCAAGATAATTTATGATT+TGG - chr5_2:74032536-74032555 Msa0787860:intron 15.0%
!!! TTGTTTTATCTTTAATTTTC+AGG - chr5_2:74032850-74032869 Msa0787860:intron 15.0%
!!! TGTTTTATCTTTAATTTTCA+GGG - chr5_2:74032851-74032870 Msa0787860:intron 15.0%
!! AAAAAAACTTGTAATTATGT+TGG - chr5_2:74033331-74033350 Msa0787860:intron 15.0%
!! AAAAAAACTTGTAATTATGT+TGG - chr5_2:74033331-74033350 Msa0787860:intron 15.0%
!! AAAAAAACTTGTAATTATGT+TGG - chr5_2:74033331-74033350 Msa0787860:intron 15.0%
!! AAAAAAACTTGTAATTATGT+TGG - chr5_2:74033331-74033350 Msa0787860:intron 15.0%
!!! AAGAATTTTTTTATTTGGTT+TGG - chr5_2:74033705-74033724 Msa0787860:intron 15.0%
!! CAATGATTTAATTAGAAAAT+GGG - chr5_2:74034146-74034165 Msa0787860:intron 15.0%
!! AACATATAAAATGTTCAAAA+TGG - chr5_2:74035256-74035275 Msa0787860:intron 15.0%
!! ACATATAAAATGTTCAAAAT+GGG - chr5_2:74035257-74035276 Msa0787860:intron 15.0%
!! ACCAAATAATAAAATATTAG+AGG + chr5_2:74035449-74035468 None:intergenic 15.0%
!!! TAATAATGCTTTGAATTTTT+TGG + chr5_2:74035493-74035512 None:intergenic 15.0%
!! TATACTAAAAGTAAGTATTA+TGG + chr5_2:74035581-74035600 None:intergenic 15.0%
!!! TAGTATAATTTTTTTGTCAT+AGG - chr5_2:74035594-74035613 Msa0787860:intron 15.0%
!!! TTTTTTTTTCCTAACAAACT+TGG - chr5_2:74032418-74032437 Msa0787860:intron 20.0%
!!! TTTTTTTTCCTAACAAACTT+GGG - chr5_2:74032419-74032438 Msa0787860:intron 20.0%
!! TAAATAAACTCTTCTACAAA+TGG - chr5_2:74032495-74032514 Msa0787860:intron 20.0%
!! ATTTAGATAAACTCTTCTAA+AGG - chr5_2:74032609-74032628 Msa0787860:intron 20.0%
!! GGTGAATTTAATAACTTATT+TGG - chr5_2:74032642-74032661 Msa0787860:intron 20.0%
!! AGTAGTAATATATATTGTCT+AGG + chr5_2:74032715-74032734 None:intergenic 20.0%
!!! ATATCTAATTAATTTGACGA+TGG - chr5_2:74032925-74032944 Msa0787860:CDS 20.0%
!!! TTTTGTACTTTAATTAAGGT+TGG + chr5_2:74033048-74033067 None:intergenic 20.0%
!!! TGGTTTTTGTACTTTAATTA+AGG + chr5_2:74033052-74033071 None:intergenic 20.0%
!!! AAAATGTTTAAAGTTATCGA+TGG + chr5_2:74033142-74033161 None:intergenic 20.0%
!! ATTTACACAAATTTACTTGA+TGG - chr5_2:74033186-74033205 Msa0787860:CDS 20.0%
!! AAAAAAACTTGTAATTGTGT+TGG - chr5_2:74033232-74033251 Msa0787860:CDS 20.0%
!!! TAGGGAAGAATTTTTTTATT+TGG - chr5_2:74033700-74033719 Msa0787860:intron 20.0%
!! GCAATGATTTAATTAGAAAA+TGG - chr5_2:74034145-74034164 Msa0787860:intron 20.0%
!! AGATATAAAATCTTCACTTA+AGG - chr5_2:74034538-74034557 Msa0787860:intron 20.0%
!! GAAAATAAGAATGACTTATT+AGG - chr5_2:74034602-74034621 Msa0787860:intron 20.0%
!!! AACAAAAAACCAAATTTTGA+TGG - chr5_2:74034839-74034858 Msa0787860:intron 20.0%
!!! ACAAAAAACCAAATTTTGAT+GGG - chr5_2:74034840-74034859 Msa0787860:intron 20.0%
!!! TCTTTCTAGTATTTTACTTA+AGG - chr5_2:74034931-74034950 Msa0787860:intron 20.0%
!!! TTGAACATTTTATATGTTAG+CGG + chr5_2:74035254-74035273 None:intergenic 20.0%
!!! TCAAAAATCAATCACAATTT+TGG - chr5_2:74035340-74035359 Msa0787860:intron 20.0%
!!! GCCTCTAATATTTTATTATT+TGG - chr5_2:74035445-74035464 Msa0787860:intron 20.0%
!!! AAAATTCAAAGCATTATTAC+TGG - chr5_2:74035494-74035513 Msa0787860:intron 20.0%
!! AATCCATATAGGATTTTGTA+TGG - chr5_2:74031878-74031897 Msa0787860:CDS 25.0%
! CATAAAGGATCTTATTAAGA+TGG - chr5_2:74031904-74031923 Msa0787860:CDS 25.0%
!!! CATGAATTTTAACATTGTGT+TGG + chr5_2:74031997-74032016 None:intergenic 25.0%
! CAACACAATGTTAAAATTCA+TGG - chr5_2:74031995-74032014 Msa0787860:CDS 25.0%
! TGAATTCAACTTTGTATACA+GGG + chr5_2:74032521-74032540 None:intergenic 25.0%
! TTGAATTCAACTTTGTATAC+AGG + chr5_2:74032522-74032541 None:intergenic 25.0%
! AAAAACCACTTGAATCTATT+TGG - chr5_2:74033064-74033083 Msa0787860:CDS 25.0%
! TAAAGTTGCAAATGTTATGT+AGG - chr5_2:74033377-74033396 Msa0787860:intron 25.0%
! AAAGTTGCAAATGTTATGTA+GGG - chr5_2:74033378-74033397 Msa0787860:intron 25.0%
!!! ATTTTCAAGTTACTAGTTAG+TGG - chr5_2:74033816-74033835 Msa0787860:intron 25.0%
! TTTCCATTCAGAAAAATTGA+AGG - chr5_2:74033896-74033915 Msa0787860:CDS 25.0%
!! TAACCTTCAATTTTTCTGAA+TGG + chr5_2:74033902-74033921 None:intergenic 25.0%
!!! GCTTTTTTTTCCTTCATTTT+TGG - chr5_2:74033955-74033974 Msa0787860:CDS 25.0%
!!! TTGCAACTTTTGAAAAAAGT+TGG + chr5_2:74034129-74034148 None:intergenic 25.0%
! TGATTTAATTAGAAAATGGG+AGG - chr5_2:74034149-74034168 Msa0787860:intron 25.0%
!! TGAATTTTTACATTCCTCTA+TGG - chr5_2:74034337-74034356 Msa0787860:intron 25.0%
! TTTGTAATTAATCACTAGCT+AGG - chr5_2:74034436-74034455 Msa0787860:intron 25.0%
! AATAGGAGGATTAATGAAAT+TGG - chr5_2:74034512-74034531 Msa0787860:intron 25.0%
! ATAGGAGGATTAATGAAATT+GGG - chr5_2:74034513-74034532 Msa0787860:intron 25.0%
! TTAAGGATATGATCAACAAA+AGG - chr5_2:74034555-74034574 Msa0787860:intron 25.0%
! TAAGGATATGATCAACAAAA+GGG - chr5_2:74034556-74034575 Msa0787860:intron 25.0%
! CAAAAGGGTGAAAATATTAA+AGG - chr5_2:74034571-74034590 Msa0787860:intron 25.0%
! GAATATTGAAGATGTAATTC+AGG - chr5_2:74034688-74034707 Msa0787860:intron 25.0%
! TTATTTAGCCCATCAAAATT+TGG + chr5_2:74034851-74034870 None:intergenic 25.0%
!! ACTTTTGTCCAACAAATTTA+AGG - chr5_2:74034959-74034978 Msa0787860:intron 25.0%
! TGACAAAACCTTAAATTTGT+TGG + chr5_2:74034970-74034989 None:intergenic 25.0%
!! CAAGTAATGCATCTTTTAAA+CGG + chr5_2:74035148-74035167 None:intergenic 25.0%
! AGAAATTATGACCGATAATT+CGG - chr5_2:74035228-74035247 Msa0787860:intron 25.0%
! AAAATATTAGAGTCCAATCA+GGG + chr5_2:74035410-74035429 None:intergenic 25.0%
! AAAAATATTAGAGTCCAATC+AGG + chr5_2:74035411-74035430 None:intergenic 25.0%
!!! AAATATTAGAGGCATTTTTC+TGG + chr5_2:74035438-74035457 None:intergenic 25.0%
!! TGAAAGCTTTTATATTCAAC+TGG - chr5_2:74035527-74035546 Msa0787860:intron 25.0%
! AAAAGTAAGTATTATGGCTT+TGG + chr5_2:74035575-74035594 None:intergenic 25.0%
! ATTGAGAAAAATGTGAAACT+TGG - chr5_2:74035679-74035698 Msa0787860:intron 25.0%
!!! AGAGTTTCATTTTTTCCATT+TGG - chr5_2:74035841-74035860 Msa0787860:CDS 25.0%
!!! TTTCATTTTTTCCATTTGGA+TGG - chr5_2:74035845-74035864 Msa0787860:CDS 25.0%
!!! TTCATTTTTTCCATTTGGAT+GGG - chr5_2:74035846-74035865 Msa0787860:CDS 25.0%
! TCATATTATTCTGCGTAAAT+TGG - chr5_2:74036017-74036036 Msa0787860:exon 25.0%
TTTCTCTGTTTGTAATTGGT+GGG + chr5_2:74031727-74031746 None:intergenic 30.0%
ATTTCTCTGTTTGTAATTGG+TGG + chr5_2:74031728-74031747 None:intergenic 30.0%
ACCAATTACAAACAGAGAAA+TGG - chr5_2:74031727-74031746 Msa0787860:CDS 30.0%
TCCATTTCTCTGTTTGTAAT+TGG + chr5_2:74031731-74031750 None:intergenic 30.0%
TTACAAACAGAGAAATGGAA+TGG - chr5_2:74031732-74031751 Msa0787860:CDS 30.0%
TCTCCATACAAAATCCTATA+TGG + chr5_2:74031884-74031903 None:intergenic 30.0%
! GATTTTGTATGGAGACATAA+AGG - chr5_2:74031889-74031908 Msa0787860:CDS 30.0%
GGATCTTATTAAGATGGAAA+AGG - chr5_2:74031910-74031929 Msa0787860:CDS 30.0%
TTAACATTGTGTTGGATGTA+GGG + chr5_2:74031989-74032008 None:intergenic 30.0%
TTTAACATTGTGTTGGATGT+AGG + chr5_2:74031990-74032009 None:intergenic 30.0%
AAAGATGACACATCACATTT+AGG + chr5_2:74032057-74032076 None:intergenic 30.0%
ATATCGAGTTTGATTCCTTA+TGG - chr5_2:74032336-74032355 Msa0787860:intron 30.0%
! AATATCAACCCAAGTTTGTT+AGG + chr5_2:74032430-74032449 None:intergenic 30.0%
!! ACTTGGGTTGATATTGTTAA+AGG - chr5_2:74032435-74032454 Msa0787860:intron 30.0%
! TGTTTTGCTTATTGTGATGA+AGG - chr5_2:74032951-74032970 Msa0787860:CDS 30.0%
! TGAATTTAGGCATTTTCGAT+TGG - chr5_2:74033021-74033040 Msa0787860:CDS 30.0%
ATCAACCAAATAGATTCAAG+TGG + chr5_2:74033072-74033091 None:intergenic 30.0%
TTGAATCTATTTGGTTGATC+AGG - chr5_2:74033073-74033092 Msa0787860:CDS 30.0%
TAGAGTTGCAAATGTTATGT+AGG - chr5_2:74033278-74033297 Msa0787860:intron 30.0%
AGAGTTGCAAATGTTATGTA+GGG - chr5_2:74033279-74033298 Msa0787860:intron 30.0%
TAGAGTTGCAAATGTTATGT+AGG - chr5_2:74033278-74033297 Msa0787860:intron 30.0%
AGAGTTGCAAATGTTATGTA+GGG - chr5_2:74033279-74033298 Msa0787860:intron 30.0%
TAGAGTTGCAAATGTTATGT+AGG - chr5_2:74033278-74033297 Msa0787860:intron 30.0%
AGAGTTGCAAATGTTATGTA+GGG - chr5_2:74033279-74033298 Msa0787860:intron 30.0%
TAGAGTTGCAAATGTTATGT+AGG - chr5_2:74033278-74033297 Msa0787860:intron 30.0%
AGAGTTGCAAATGTTATGTA+GGG - chr5_2:74033279-74033298 Msa0787860:intron 30.0%
! ATTTTTCTGAATGGAAAGCA+GGG + chr5_2:74033893-74033912 None:intergenic 30.0%
! AATTTTTCTGAATGGAAAGC+AGG + chr5_2:74033894-74033913 None:intergenic 30.0%
TTTGCAGAAATGTACTTTGA+AGG + chr5_2:74033981-74034000 None:intergenic 30.0%
GATCATGTGAAATAGACATA+TGG - chr5_2:74034190-74034209 Msa0787860:intron 30.0%
!! GTTATTTCTCGAACAACATT+TGG - chr5_2:74034240-74034259 Msa0787860:intron 30.0%
TTTGGAAGTAGTTATGAAGA+AGG - chr5_2:74034258-74034277 Msa0787860:intron 30.0%
! ATTTTTACATTCCTCTATGG+AGG - chr5_2:74034340-74034359 Msa0787860:intron 30.0%
AGGGTGAAAATATTAAAGGA+AGG - chr5_2:74034575-74034594 Msa0787860:intron 30.0%
GTGAAAATATTAAAGGAAGG+TGG - chr5_2:74034578-74034597 Msa0787860:intron 30.0%
GACAAGGAAATTAAAGAACA+CGG - chr5_2:74034644-74034663 Msa0787860:intron 30.0%
CTACTTCAACTTTACTTGTT+TGG - chr5_2:74034744-74034763 Msa0787860:intron 30.0%
AACTTTACTTGTTTGGACAA+TGG - chr5_2:74034751-74034770 Msa0787860:intron 30.0%
!! GAGGAAGTATTACAAATCTT+TGG - chr5_2:74034815-74034834 Msa0787860:intron 30.0%
! TACTTTAGCGAAGGAAATTT+TGG + chr5_2:74035314-74035333 None:intergenic 30.0%
! TGATATTTCTACTTTAGCGA+AGG + chr5_2:74035323-74035342 None:intergenic 30.0%
CATAACCTCATACAAAATCA+TGG + chr5_2:74035623-74035642 None:intergenic 30.0%
TCATGGTGCAACAATATAAT+TGG + chr5_2:74035742-74035761 None:intergenic 30.0%
! TTCAATCCTGAAAGATTTTC+TGG - chr5_2:74035793-74035812 Msa0787860:CDS 30.0%
!!! TCATTTTTTCCATTTGGATG+GGG - chr5_2:74035847-74035866 Msa0787860:CDS 30.0%
! TGGACAAAACTTTTCTCTAT+TGG - chr5_2:74035885-74035904 Msa0787860:CDS 30.0%
TTCTCTGTTTGTAATTGGTG+GGG + chr5_2:74031726-74031745 None:intergenic 35.0%
TTAAGAGAACAAGGTCTTCA+AGG - chr5_2:74031854-74031873 Msa0787860:CDS 35.0%
TAAGAGAACAAGGTCTTCAA+GGG - chr5_2:74031855-74031874 Msa0787860:CDS 35.0%
TATATCATCGGTGAGATTCA+TGG + chr5_2:74031951-74031970 None:intergenic 35.0%
! TATTGTTGGTAAGTGGTAAC+TGG - chr5_2:74032276-74032295 Msa0787860:intron 35.0%
! TCTTCTAAAGGTTCACACTA+AGG - chr5_2:74032621-74032640 Msa0787860:intron 35.0%
! GTTTGTTAGGGCTTGAATTT+AGG - chr5_2:74033008-74033027 Msa0787860:CDS 35.0%
!! TTTGGTTTGGAACAAAACCA+AGG - chr5_2:74033718-74033737 Msa0787860:intron 35.0%
!! TTGGTTTGGAACAAAACCAA+GGG - chr5_2:74033719-74033738 Msa0787860:intron 35.0%
! AATACATCTACGATTTGCTC+AGG + chr5_2:74033759-74033778 None:intergenic 35.0%
! ACTTTGAAGGCCAAAAATGA+AGG + chr5_2:74033968-74033987 None:intergenic 35.0%
TCTATTTCACATGATCCATC+TGG + chr5_2:74034186-74034205 None:intergenic 35.0%
ATCACTAGCCAAATTCTGAA+GGG + chr5_2:74034220-74034239 None:intergenic 35.0%
AGTCTTAATTACCTCCATAG+AGG + chr5_2:74034354-74034373 None:intergenic 35.0%
GTAATTAATCACTAGCTAGG+AGG - chr5_2:74034439-74034458 Msa0787860:intron 35.0%
AAACATGTCATTCGTGTAAC+TGG + chr5_2:74034465-74034484 None:intergenic 35.0%
CGAATGACATGTTTATTTGC+AGG - chr5_2:74034471-74034490 Msa0787860:intron 35.0%
TTGTACCTACTATGGTCAAT+AGG - chr5_2:74034495-74034514 Msa0787860:intron 35.0%
GGACAATGGTATTATTGAGT+AGG - chr5_2:74034765-74034784 Msa0787860:intron 35.0%
!! AAGGTTTTGTCACAATCATG+AGG - chr5_2:74034978-74034997 Msa0787860:intron 35.0%
!! GAGGTCTAAGCTTTAGAAAA+TGG - chr5_2:74034997-74035016 Msa0787860:intron 35.0%
TCCTTAGCGACAAAAAAATC+CGG + chr5_2:74035178-74035197 None:intergenic 35.0%
CCATGAATATATTTGCAGTG+TGG + chr5_2:74035381-74035400 None:intergenic 35.0%
CCACACTGCAAATATATTCA+TGG - chr5_2:74035378-74035397 Msa0787860:intron 35.0%
! GGTTACCATGATTTTGTATG+AGG - chr5_2:74035615-74035634 Msa0787860:intron 35.0%
TTTCGCGAAAGCTCAATTAT+GGG + chr5_2:74035658-74035677 None:intergenic 35.0%
TGCACCATGATTGTGAATTA+TGG - chr5_2:74035752-74035771 Msa0787860:CDS 35.0%
GCACCATGATTGTGAATTAT+GGG - chr5_2:74035753-74035772 Msa0787860:CDS 35.0%
CACCATGATTGTGAATTATG+GGG - chr5_2:74035754-74035773 Msa0787860:CDS 35.0%
! AATCCTGAAAGATTTTCTGG+AGG - chr5_2:74035796-74035815 Msa0787860:CDS 35.0%
ATTCCTCCAGAAAATCTTTC+AGG + chr5_2:74035802-74035821 None:intergenic 35.0%
TTCTCTATTGGAAGCAAAGA+TGG - chr5_2:74035897-74035916 Msa0787860:CDS 35.0%
ATTGCTCTTAAGCCACAATA+CGG - chr5_2:74035991-74036010 Msa0787860:CDS 35.0%
! ATAATATGAGCACCGTATTG+TGG + chr5_2:74036006-74036025 None:intergenic 35.0%
AAACCAAGCGTCACAATGAT+GGG + chr5_2:74031773-74031792 None:intergenic 40.0%
! TTGTGACGCTTGGTTTGATA+TGG - chr5_2:74031777-74031796 Msa0787860:CDS 40.0%
! TGTGACGCTTGGTTTGATAT+GGG - chr5_2:74031778-74031797 Msa0787860:CDS 40.0%
! AACAGCTTCTCTAGCTTCTT+TGG + chr5_2:74031836-74031855 None:intergenic 40.0%
GAGAAGCTGTTAAGAGAACA+AGG - chr5_2:74031845-74031864 Msa0787860:CDS 40.0%
GTCTTCAAGGGAATCCATAT+AGG - chr5_2:74031867-74031886 Msa0787860:CDS 40.0%
TTAAGATGGAAAAGGAAGCC+AGG - chr5_2:74031918-74031937 Msa0787860:CDS 40.0%
GAGATTCATGGATTTAGACC+TGG + chr5_2:74031939-74031958 None:intergenic 40.0%
TACACGTGGCGTTATATCAT+CGG + chr5_2:74031963-74031982 None:intergenic 40.0%
CAAAGTCCAGTGCATATTGT+TGG - chr5_2:74032262-74032281 Msa0787860:intron 40.0%
CACTTACCAACAATATGCAC+TGG + chr5_2:74032271-74032290 None:intergenic 40.0%
! CAGTGCATATTGTTGGTAAG+TGG - chr5_2:74032269-74032288 Msa0787860:intron 40.0%
TAGCAATCAAGTGCACCATA+AGG + chr5_2:74032354-74032373 None:intergenic 40.0%
CTATTTGGTTGATCAGGACA+CGG - chr5_2:74033079-74033098 Msa0787860:CDS 40.0%
TATTTGGTTGATCAGGACAC+GGG - chr5_2:74033080-74033099 Msa0787860:CDS 40.0%
AAAAGTGGAGCAAGCATAGA+AGG - chr5_2:74033859-74033878 Msa0787860:CDS 40.0%
CATCACTAGCCAAATTCTGA+AGG + chr5_2:74034221-74034240 None:intergenic 40.0%
TTGCAGGTTTGTACCTACTA+TGG - chr5_2:74034487-74034506 Msa0787860:intron 40.0%
TACCTACTATGGTCAATAGG+AGG - chr5_2:74034498-74034517 Msa0787860:intron 40.0%
ATCCTCCTATTGACCATAGT+AGG + chr5_2:74034503-74034522 None:intergenic 40.0%
! TCTTCTAGAGACAAACGACA+AGG - chr5_2:74034628-74034647 Msa0787860:intron 40.0%
TGCAAGTTGTTCTACTTTGC+AGG - chr5_2:74034713-74034732 Msa0787860:intron 40.0%
GCAAGTTGTTCTACTTTGCA+GGG - chr5_2:74034714-74034733 Msa0787860:intron 40.0%
!! AAGCTTTAGAAAATGGCTCC+AGG - chr5_2:74035004-74035023 Msa0787860:intron 40.0%
!! AGCTTTAGAAAATGGCTCCA+GGG - chr5_2:74035005-74035024 Msa0787860:intron 40.0%
CTAAGGATCCTATTGTCATG+AGG - chr5_2:74035043-74035062 Msa0787860:intron 40.0%
AGCTTAGACCTCATGACAAT+AGG + chr5_2:74035054-74035073 None:intergenic 40.0%
TACCTCGTACTGAGACATAT+CGG + chr5_2:74035100-74035119 None:intergenic 40.0%
! ATGCATTACTTGTTAGCGAC+CGG - chr5_2:74035156-74035175 Msa0787860:intron 40.0%
!!! ACCGGATTTTTTTGTCGCTA+AGG - chr5_2:74035174-74035193 Msa0787860:intron 40.0%
TTGTCGCTAAGGATGAAAGT+CGG - chr5_2:74035185-74035204 Msa0787860:intron 40.0%
TATGTTAGCGGCCGAATTAT+CGG + chr5_2:74035242-74035261 None:intergenic 40.0%
GTTTCGCGAAAGCTCAATTA+TGG + chr5_2:74035659-74035678 None:intergenic 40.0%
CACCCCATAATTCACAATCA+TGG + chr5_2:74035759-74035778 None:intergenic 40.0%
GGAATTTCCAAAGCAACGAA+CGG - chr5_2:74035817-74035836 Msa0787860:CDS 40.0%
! TTTTGTCCAATGCAGATCCT+AGG + chr5_2:74035874-74035893 None:intergenic 40.0%
TTAAGAGCAATTACTGTGGC+TGG + chr5_2:74035982-74036001 None:intergenic 40.0%
TGGCTTAAGAGCAATTACTG+TGG + chr5_2:74035986-74036005 None:intergenic 40.0%
ATTCCCATCATTGTGACGCT+TGG - chr5_2:74031767-74031786 Msa0787860:CDS 45.0%
CAAACCAAGCGTCACAATGA+TGG + chr5_2:74031774-74031793 None:intergenic 45.0%
! TTGGTTTGATATGGGCATGG+AGG - chr5_2:74031786-74031805 Msa0787860:CDS 45.0%
TGCTGAATTGGTTGTGGTTG+AGG - chr5_2:74031810-74031829 Msa0787860:CDS 45.0%
TGGATGTAGGGAATTACACG+TGG + chr5_2:74031977-74031996 None:intergenic 45.0%
! TAGTGGTCTTGCAAGTCTTG+AGG - chr5_2:74033833-74033852 Msa0787860:intron 45.0%
! AGTGGTCTTGCAAGTCTTGA+GGG - chr5_2:74033834-74033853 Msa0787860:intron 45.0%
CAAGTCTTGAGGGAGAAAAG+TGG - chr5_2:74033844-74033863 Msa0787860:intron 45.0%
GAGGAAATGTTGTCTCCAGA+TGG - chr5_2:74034168-74034187 Msa0787860:intron 45.0%
ATGGCCTTCCCTTCAGAATT+TGG - chr5_2:74034209-74034228 Msa0787860:intron 45.0%
! CTAGCCAAATTCTGAAGGGA+AGG + chr5_2:74034216-74034235 None:intergenic 45.0%
ACACGGAAACAACGTGAATG+TGG - chr5_2:74034661-74034680 Msa0787860:intron 45.0%
CACGGAAACAACGTGAATGT+GGG - chr5_2:74034662-74034681 Msa0787860:intron 45.0%
TATTGAGTAGGTACCCTGAG+TGG - chr5_2:74034777-74034796 Msa0787860:intron 45.0%
GGATCCTTAGAGCCATTTGA+GGG + chr5_2:74035033-74035052 None:intergenic 45.0%
AGGATCCTTAGAGCCATTTG+AGG + chr5_2:74035034-74035053 None:intergenic 45.0%
TTCCGATATGTCTCAGTACG+AGG - chr5_2:74035095-74035114 Msa0787860:intron 45.0%
TTCATGGATTCGTCCCTGAT+TGG - chr5_2:74035394-74035413 Msa0787860:intron 45.0%
GGAGACCTAACATTATCTGC+TGG - chr5_2:74035700-74035719 Msa0787860:intron 45.0%
CCACTCCAGCAGATAATGTT+AGG + chr5_2:74035708-74035727 None:intergenic 45.0%
CCTAACATTATCTGCTGGAG+TGG - chr5_2:74035705-74035724 Msa0787860:intron 45.0%
AACATTATCTGCTGGAGTGG+AGG - chr5_2:74035708-74035727 Msa0787860:intron 45.0%
AACTCTACCGTTCGTTGCTT+TGG + chr5_2:74035827-74035846 None:intergenic 45.0%
!!! GTTTTTTTTTTTAATAATTT+CGG + chr5_2:74032693-74032712 None:intergenic 5.0%
!!! AAGTTTTTTTTTTAATTAAA+TGG + chr5_2:74033222-74033241 None:intergenic 5.0%
!!! AGTTTTTTTTTTTAATTAAA+TGG + chr5_2:74033320-74033339 None:intergenic 5.0%
!!! GTTTTTTTTTTTTAATTAAA+TGG + chr5_2:74033419-74033438 None:intergenic 5.0%
!! TAATAAATAATAAAGAAATA+AGG + chr5_2:74034089-74034108 None:intergenic 5.0%
!! TTTATTATTTATTATACTAT+AGG - chr5_2:74034095-74034114 Msa0787860:intron 5.0%
! CGCTTGGTTTGATATGGGCA+TGG - chr5_2:74031783-74031802 Msa0787860:CDS 50.0%
GGAGGATGCTGAATTGGTTG+TGG - chr5_2:74031804-74031823 Msa0787860:CDS 50.0%
GGTTCTGTGAGAATCACCCT+TGG + chr5_2:74033738-74033757 None:intergenic 50.0%
! GGATCCCTCAAATGGCTCTA+AGG - chr5_2:74035026-74035045 Msa0787860:intron 50.0%
CGCGAAAGCTCAATTATGGG+AGG + chr5_2:74035655-74035674 None:intergenic 50.0%
TTCCATTTGGATGGGGTCCT+AGG - chr5_2:74035854-74035873 Msa0787860:CDS 50.0%
ATCCTAGGACCCCATCCAAA+TGG + chr5_2:74035859-74035878 None:intergenic 50.0%
GGGCATGGAGGATGCTGAAT+TGG - chr5_2:74031798-74031817 Msa0787860:CDS 55.0%
GTACCCTGAGTGGCAAGCAA+GGG - chr5_2:74034787-74034806 Msa0787860:intron 55.0%
TTGCCCTTGCTTGCCACTCA+GGG + chr5_2:74034793-74034812 None:intergenic 55.0%
TGAGTGGCAAGCAAGGGCAA+GGG - chr5_2:74034793-74034812 Msa0787860:intron 55.0%
AGAGCCATTTGAGGGATCCC+TGG + chr5_2:74035025-74035044 None:intergenic 55.0%
TGGGGTCCTAGGATCTGCAT+TGG - chr5_2:74035865-74035884 Msa0787860:CDS 55.0%
TGTGGCTGGAGCATGAGCAT+AGG + chr5_2:74035968-74035987 None:intergenic 55.0%
GGTACCCTGAGTGGCAAGCA+AGG - chr5_2:74034786-74034805 Msa0787860:intron 60.0%
CTTGCCCTTGCTTGCCACTC+AGG + chr5_2:74034794-74034813 None:intergenic 60.0%
CTGAGTGGCAAGCAAGGGCA+AGG - chr5_2:74034792-74034811 Msa0787860:intron 60.0%
GGCTCCAGGGATCCCTCAAA+TGG - chr5_2:74035018-74035037 Msa0787860:intron 60.0%
GCTGGAGCATGAGCATAGGC+TGG + chr5_2:74035964-74035983 None:intergenic 60.0%
GTGGCAAGCAAGGGCAAGGG+AGG - chr5_2:74034796-74034815 Msa0787860:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 74031717 74036047 74031717 ID=Msa0787860;Name=Msa0787860
chr5_2 mRNA 74031717 74036047 74031717 ID=Msa0787860-mRNA-1;Parent=Msa0787860;Name=Msa0787860-mRNA-1;_AED=0.14;_eAED=0.14;_QI=29|1|0.6|1|1|1|5|0|516
chr5_2 exon 74031717 74032148 74031717 ID=Msa0787860-mRNA-1:exon:22578;Parent=Msa0787860-mRNA-1
chr5_2 exon 74032884 74033271 74032884 ID=Msa0787860-mRNA-1:exon:22577;Parent=Msa0787860-mRNA-1
chr5_2 exon 74033403 74033647 74033403 ID=Msa0787860-mRNA-1:exon:22576;Parent=Msa0787860-mRNA-1
chr5_2 exon 74033847 74034061 74033847 ID=Msa0787860-mRNA-1:exon:22575;Parent=Msa0787860-mRNA-1
chr5_2 exon 74035748 74036047 74035748 ID=Msa0787860-mRNA-1:exon:22574;Parent=Msa0787860-mRNA-1
chr5_2 five_prime_UTR 74036019 74036047 74036019 ID=Msa0787860-mRNA-1:five_prime_utr;Parent=Msa0787860-mRNA-1
chr5_2 CDS 74035748 74036018 74035748 ID=Msa0787860-mRNA-1:cds;Parent=Msa0787860-mRNA-1
chr5_2 CDS 74033847 74034061 74033847 ID=Msa0787860-mRNA-1:cds;Parent=Msa0787860-mRNA-1
chr5_2 CDS 74033403 74033647 74033403 ID=Msa0787860-mRNA-1:cds;Parent=Msa0787860-mRNA-1
chr5_2 CDS 74032884 74033271 74032884 ID=Msa0787860-mRNA-1:cds;Parent=Msa0787860-mRNA-1
chr5_2 CDS 74031717 74032148 74031717 ID=Msa0787860-mRNA-1:cds;Parent=Msa0787860-mRNA-1
Gene Sequence

>Msa0787860

ATGGAATGGTATTCAAGCATCATTCCCATCATTGTGACGCTTGGTTTGATATGGGCATGGAGGATGCTGAATTGGTTGTGGTTGAGGCCAAAGAAGCTAGAGAAGCTGTTAAGAGAACAAGGTCTTCAAGGGAATCCATATAGGATTTTGTATGGAGACATAAAGGATCTTATTAAGATGGAAAAGGAAGCCAGGTCTAAATCCATGAATCTCACCGATGATATAACGCCACGTGTAATTCCCTACATCCAACACAATGTTAAAATTCATGGGAAGAATTTTTTTATTTGGTTTGGAACAAAACCAAGGGTGATTCTCACAGAACCTGAGCAAATCGTAGATGTATTGAACAAGATCTCTGACTTCCCAAAGAATAATCATAAAATTTTCAAGTTACTAGTTAGTGGTCTTGCAAGTCTTGAGGGAGAAAAGTGGAGCAAGCATAGAAGGCTAATCAACCCTGCTTTCCATTCAGAAAAATTGAAGGTTATGACACCAACTTTTTTCAAAAGTTGCAATGATTTAATTAGAAAATGGGAGGAAATGTTGTCTCCAGATGGATCATGTGAAATAGACATATGGCCTTCCCTTCAGAATTTGGCTAGTGATGTTATTTCTCGAACAACATTTGGAAGTAGTTATGAAGAAGGAAGAAGAATATTTCAACTTCAAATTGAGCAAGCTGAACTTATGACAAAAGTTCAAATGAATTTTTACATTCCTCTATGGAGGTTTGTACCTACTATGGTCAATAGGAGGATTAATGAAATTGGGAAAGATATAAAATCTTCACTTAAGGATATGATCAACAAAAGGGTGAAAATATTAAAGGAAGGTGGAGAAAATAAGAATGACTTATTAGGTATTCTTCTAGAGACAAACGACAAGGAAATTAAAGAACACGGAAACAACGTGAATGTGGGAATGAATATTGAAGATGTAATTCAGGAATGCAAGTTGTTCTACTTTGCAGGGCAAGAAACTACTTCAACTTTACTTGTTTGGACAATGGTATTATTGAGTAGGTACCCTGAGTGGCAAGCAAGGGCAAGGGAGGAAGTATTACAAATCTTTGGCAACAAAAAACCAAATTTTGATGGGCTAAATAACTTGAAGATTGTTACCATGATTTTGTATGAGGTTATGAGATTATATCCTCCCATAATTGAGCTTTCGCGAAACATTGAGAAAAATGTGAAACTTGGAGACCTAACATTATCTGCTGGAGTGGAGGTTTTCTTGCCAATTATATTGTTGCACCATGATTGTGAATTATGGGGTGATGATGCTAAAATGTTCAATCCTGAAAGATTTTCTGGAGGAATTTCCAAAGCAACGAACGGTAGAGTTTCATTTTTTCCATTTGGATGGGGTCCTAGGATCTGCATTGGACAAAACTTTTCTCTATTGGAAGCAAAGATGGCAATGACATTGATTTTACAACATTTCTCATTTGAACTTTCTCCAGCCTATGCTCATGCTCCAGCCACAGTAATTGCTCTTAAGCCACAATACGGTGCTCATATTATTCTGCGTAAATTGGAAACATAA

Protein sequence

>Msa0787860

MEWYSSIIPIIVTLGLIWAWRMLNWLWLRPKKLEKLLREQGLQGNPYRILYGDIKDLIKMEKEARSKSMNLTDDITPRVIPYIQHNVKIHGKNFFIWFGTKPRVILTEPEQIVDVLNKISDFPKNNHKIFKLLVSGLASLEGEKWSKHRRLINPAFHSEKLKVMTPTFFKSCNDLIRKWEEMLSPDGSCEIDIWPSLQNLASDVISRTTFGSSYEEGRRIFQLQIEQAELMTKVQMNFYIPLWRFVPTMVNRRINEIGKDIKSSLKDMINKRVKILKEGGENKNDLLGILLETNDKEIKEHGNNVNVGMNIEDVIQECKLFYFAGQETTSTLLVWTMVLLSRYPEWQARAREEVLQIFGNKKPNFDGLNNLKIVTMILYEVMRLYPPIIELSRNIEKNVKLGDLTLSAGVEVFLPIILLHHDCELWGDDAKMFNPERFSGGISKATNGRVSFFPFGWGPRICIGQNFSLLEAKMAMTLILQHFSFELSPAYAHAPATVIALKPQYGAHIILRKLET*