AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0751960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0751960 MtrunA17_Chr5g0394031 81.947 565 31 7 7 500 16 580 0.0 891
Msa0751960 MtrunA17_Chr8g0346061 58.481 566 162 10 8 500 12 577 0.0 650
Msa0751960 MtrunA17_Chr1g0157561 41.243 354 163 6 188 500 15 364 1.21e-88 276
Msa0751960 MtrunA17_Chr7g0276181 80.292 137 27 0 364 500 12 148 1.10e-70 222
Msa0751960 MtrunA17_Chr7g0276161 66.102 118 25 2 8 110 14 131 4.33e-44 152
Msa0751960 MtrunA17_Chr1g0157571 44.776 201 79 7 21 192 30 227 1.94e-40 145
Msa0751960 MtrunA17_Chr8g0346031 50.000 152 47 4 128 278 12 135 5.28e-38 135
Msa0751960 MtrunA17_Chr1g0157541 48.120 133 61 3 294 420 3 133 5.75e-34 125
Msa0751960 MtrunA17_Chr8g0346041 77.083 48 11 0 373 420 3 50 1.03e-24 96.7
Msa0751960 MtrunA17_Chr7g0276171 67.797 59 17 1 292 348 1 59 1.86e-18 79.3
Msa0751960 MtrunA17_Chr1g0172001 45.946 74 34 2 336 403 15 88 5.91e-15 70.9
Msa0751960 MtrunA17_Chr8g0346051 82.500 40 5 2 448 486 4 42 2.53e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0751960 AT2G46760.1 56.093 558 172 8 16 500 30 587 0.0 623
Msa0751960 AT2G46740.1 55.376 558 176 8 16 500 26 583 0.0 617
Msa0751960 AT2G46750.1 54.839 558 179 8 16 500 22 579 0.0 612
Msa0751960 AT1G32300.1 53.249 554 185 9 21 500 18 571 0.0 577
Msa0751960 AT5G56490.1 51.142 569 202 10 8 500 2 570 0.0 566
Msa0751960 AT5G11540.1 42.059 573 249 16 3 500 9 573 3.65e-137 408
Msa0751960 AT5G56470.1 61.603 237 82 4 273 500 9 245 1.96e-97 295

Find 113 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCTATTTATAATATATA+TGG 0.145093 5_2:+5544332 Msa0751960:CDS
CCCCACCAATATGGTGTATT+TGG 0.188327 5_2:-5544731 None:intergenic
CATGAGCACCAGTGCTAATT+AGG 0.257383 5_2:-5544769 None:intergenic
TATAGGGGACTCAAGAATTA+AGG 0.267243 5_2:+5547523 Msa0751960:CDS
AGGGACATGTTTGGATAGTT+TGG 0.269173 5_2:+5547478 Msa0751960:CDS
CAAATAGGGTTGTTCAAATA+TGG 0.278248 5_2:+5547811 Msa0751960:CDS
AATGCAGCCAGAATTTCTTT+AGG 0.279442 5_2:+5544920 Msa0751960:CDS
ATTGAAGAGATAGAACAAAT+AGG 0.284529 5_2:+5547796 Msa0751960:CDS
AGAATTTCTTTAGGGGTTCT+TGG 0.296221 5_2:+5544929 Msa0751960:CDS
ATGCAGCCAGAATTTCTTTA+GGG 0.319315 5_2:+5544921 Msa0751960:CDS
GGTGATGAATTGATTACTTT+TGG 0.325703 5_2:+5545514 Msa0751960:CDS
CAACTTCTAGGGCATATACT+TGG 0.339877 5_2:+5547690 Msa0751960:intron
AAATGAGCACAGCTTGTATA+GGG 0.346844 5_2:+5547507 Msa0751960:CDS
ACCCCATATATATTATAAAT+AGG 0.347265 5_2:-5544335 None:intergenic
TTCTGGCTGCATTAAGATCT+TGG 0.351590 5_2:-5544910 None:intergenic
CGTGTCTCTGTAAATACATT+TGG 0.353710 5_2:+5545607 Msa0751960:CDS
TTATTTGATGAACACTGAAT+TGG 0.359791 5_2:-5544380 None:intergenic
TTTATAGGTTACCCTACAAT+TGG 0.371803 5_2:+5545438 Msa0751960:intron
AATAGAAATGTAGGATTTGT+GGG 0.373649 5_2:+5547856 Msa0751960:CDS
TAAGGATGCAAAGGGTTTGT+AGG 0.373655 5_2:+5548101 Msa0751960:CDS
TTCCTATTTATAATATATAT+GGG 0.375839 5_2:+5544333 Msa0751960:CDS
CAAATGAGCACAGCTTGTAT+AGG 0.376160 5_2:+5547506 Msa0751960:CDS
TCTGTAAATACATTTGGAAA+TGG 0.379112 5_2:+5545613 Msa0751960:CDS
ATATGGAGGGTTACCCCATT+GGG 0.386637 5_2:+5547828 Msa0751960:CDS
TCTAAGCCACACAGTGCCTT+TGG 0.390414 5_2:-5547635 None:intergenic
AAGAACCCCTAAAGAAATTC+TGG 0.393239 5_2:-5544927 None:intergenic
CAGACCAGGCAGAATCTATA+AGG 0.400088 5_2:+5548083 Msa0751960:CDS
CTAGCTTGTCCTGATGATAA+TGG 0.400394 5_2:+5544578 Msa0751960:CDS
TTGAAGAGATAGAACAAATA+GGG 0.401394 5_2:+5547797 Msa0751960:CDS
TGAAGAGGGGTTCCAATTGT+AGG 0.412025 5_2:-5545450 None:intergenic
CGGTTGTTGAATCCAACAAC+GGG 0.428344 5_2:-5547443 None:intergenic
ACAATCATCAGGGACATGTT+TGG 0.432635 5_2:+5547469 Msa0751960:CDS
AACAACCGAATACAATCATC+AGG 0.432752 5_2:+5547458 Msa0751960:CDS
GAACACTGAATTGGATCTGC+TGG 0.438312 5_2:-5544371 None:intergenic
GTAAAGATCCATTGACTCCT+AGG 0.438786 5_2:+5547758 Msa0751960:CDS
TTTATTGGATACCCCGTTGT+TGG 0.439150 5_2:+5547431 Msa0751960:CDS
TGGTGGGGTTTAACCATTGG+TGG 0.442781 5_2:+5544746 Msa0751960:CDS
CTCTGCCAAATACACCATAT+TGG 0.446772 5_2:+5544726 Msa0751960:CDS
ATGGTTAAACCCCACCAATA+TGG 0.449948 5_2:-5544740 None:intergenic
TGAGGCTGCAAGGTTTGAAA+TGG 0.451881 5_2:+5544703 Msa0751960:intron
TCATCAGGACAAGCTAGCTT+TGG 0.454874 5_2:-5544572 None:intergenic
ATGTCCCTGATGATTGTATT+CGG 0.457805 5_2:-5547463 None:intergenic
GGAAGTACATTGTGGGGTAA+AGG 0.462925 5_2:+5544791 Msa0751960:CDS
AATGGTTTATATGATTCCAT+TGG 0.463396 5_2:+5545631 Msa0751960:CDS
ATTAGTAGTCCATTATCATC+AGG 0.465886 5_2:-5544587 None:intergenic
AAATAGAAATGTAGGATTTG+TGG 0.469318 5_2:+5547855 Msa0751960:CDS
AATATGGAGGGTTACCCCAT+TGG 0.476962 5_2:+5547827 Msa0751960:CDS
TGGCAACAAGCATGAATTTG+CGG 0.478856 5_2:+5545534 Msa0751960:CDS
GCATCCTTATAGATTCTGCC+TGG 0.484118 5_2:-5548087 None:intergenic
TCATAAAGCCTAGGAGTCAA+TGG 0.486792 5_2:-5547766 None:intergenic
TTAACACTTGCTAGAACTAC+AGG 0.489651 5_2:+5545679 Msa0751960:CDS
TATTGGTGGGGTTTAACCAT+TGG 0.490022 5_2:+5544743 Msa0751960:CDS
TGCACCATCACGAATTCATA+TGG 0.491511 5_2:+5544410 Msa0751960:CDS
ATGGTATCCAAATCAACAAA+AGG 0.495917 5_2:+5545564 Msa0751960:CDS
TCACTAGAGAAAAGTCTCTT+CGG 0.496911 5_2:-5547937 None:intergenic
ATTAAAAGATGGATGTGCAT+TGG 0.503020 5_2:+5548002 Msa0751960:CDS
TGGACTTCGCTCAACACCTT+CGG 0.503539 5_2:+5545651 Msa0751960:CDS
AATGCTGTATCGTAATTGAA+TGG 0.505261 5_2:-5547548 None:intergenic
AAAGATGGATGTGCATTGGA+AGG 0.509773 5_2:+5548006 Msa0751960:CDS
CTAATTAGCACTGGTGCTCA+TGG 0.510117 5_2:+5544770 Msa0751960:CDS
ATTAGAATAGTTAGCCCTGC+AGG 0.512832 5_2:+5544842 Msa0751960:CDS
TATCCATCTTCACATCCTGC+AGG 0.513188 5_2:-5544857 None:intergenic
GCCAAATACACCATATTGGT+GGG 0.516331 5_2:+5544730 Msa0751960:CDS
TGTAAGAGATCGCTTGAAGA+GGG 0.521505 5_2:-5545464 None:intergenic
ATGAGCTCCGCCTCTGTGGT+TGG 0.522032 5_2:-5544479 None:intergenic
GGAGTGACAATATTAAAAGA+TGG 0.527315 5_2:+5547991 Msa0751960:CDS
TGCTCATGGAAGTACATTGT+GGG 0.529109 5_2:+5544784 Msa0751960:CDS
GAAGAGGGGTTCCAATTGTA+GGG 0.530740 5_2:-5545449 None:intergenic
AACTTCTAGGGCATATACTT+GGG 0.530859 5_2:+5547691 Msa0751960:intron
AAGAACTACTTCTGCAGACC+AGG 0.530862 5_2:+5548069 Msa0751960:CDS
TGCCAAATACACCATATTGG+TGG 0.542586 5_2:+5544729 Msa0751960:CDS
ATAGGGTTGTTCAAATATGG+AGG 0.543202 5_2:+5547814 Msa0751960:CDS
ATTATATCTTCATAAAGCCT+AGG 0.544553 5_2:-5547775 None:intergenic
GCTTGTTCAGTTGGAGCCAA+AGG 0.549454 5_2:+5547619 Msa0751960:intron
AGAATCTATAAGGATGCAAA+GGG 0.550088 5_2:+5548093 Msa0751960:CDS
GATTGGACAGACCAAGTGCT+TGG 0.552501 5_2:+5547958 Msa0751960:CDS
ATAGGGGACTCAAGAATTAA+GGG 0.555298 5_2:+5547524 Msa0751960:CDS
ATGAATTTGCGGATGTAACA+TGG 0.558719 5_2:+5545545 Msa0751960:CDS
CAGAATCTATAAGGATGCAA+AGG 0.561034 5_2:+5548092 Msa0751960:CDS
AGCCCTGCAGGATGTGAAGA+TGG 0.570090 5_2:+5544854 Msa0751960:CDS
AGGTGTTGAGCGAAGTCCAA+TGG 0.576754 5_2:-5545647 None:intergenic
ATGTGAAGATGGATATGCTA+AGG 0.584411 5_2:+5544865 Msa0751960:CDS
ATTGGTGGCCTAATTAGCAC+TGG 0.597316 5_2:+5544761 Msa0751960:CDS
TGATATGAGCTCCGCCTCTG+TGG 0.597346 5_2:-5544483 None:intergenic
AAGATGGATGTGCATTGGAA+GGG 0.602495 5_2:+5548007 Msa0751960:CDS
ATGTAAGAGATCGCTTGAAG+AGG 0.606639 5_2:-5545465 None:intergenic
TAGGGTTGTTCAAATATGGA+GGG 0.607320 5_2:+5547815 Msa0751960:CDS
CCAAATACACCATATTGGTG+GGG 0.608182 5_2:+5544731 Msa0751960:CDS
TGCAGCCAGAATTTCTTTAG+GGG 0.610090 5_2:+5544922 Msa0751960:CDS
TCCTATTTATAATATATATG+GGG 0.612433 5_2:+5544334 Msa0751960:CDS
GTGCTCATGGAAGTACATTG+TGG 0.613279 5_2:+5544783 Msa0751960:CDS
TGTCAAATTGTTGAGAATGA+CGG 0.619117 5_2:+5544646 Msa0751960:CDS
CACTGAATTGGATCTGCTGG+AGG 0.620282 5_2:-5544368 None:intergenic
ATCCATCTTCACATCCTGCA+GGG 0.623850 5_2:-5544856 None:intergenic
ATAGAAATGTAGGATTTGTG+GGG 0.623934 5_2:+5547857 Msa0751960:CDS
ATGTGTTACATACTCATGCA+CGG 0.628045 5_2:-5544819 None:intergenic
GCAAGTGTTAATGTGGCCGA+AGG 0.628687 5_2:-5545667 None:intergenic
AGTGCTAATTAGGCCACCAA+TGG 0.631088 5_2:-5544759 None:intergenic
TCGGTTGTTGAATCCAACAA+CGG 0.632919 5_2:-5547444 None:intergenic
TAGAAATGTAGGATTTGTGG+GGG 0.638234 5_2:+5547858 Msa0751960:CDS
AATGAGCACAGCTTGTATAG+GGG 0.645893 5_2:+5547508 Msa0751960:CDS
AGTTCTAGCAAGTGTTAATG+TGG 0.647109 5_2:-5545674 None:intergenic
CACGCCATATGAATTCGTGA+TGG 0.651634 5_2:-5544414 None:intergenic
TATGTATCCAACCACAGAGG+CGG 0.656615 5_2:+5544472 Msa0751960:CDS
TATGGAGGGTTACCCCATTG+GGG 0.660407 5_2:+5547829 Msa0751960:CDS
GTAAGAGATCGCTTGAAGAG+GGG 0.684242 5_2:-5545463 None:intergenic
TTGGAGCCAAAGGCACTGTG+TGG 0.693379 5_2:+5547629 Msa0751960:CDS
ACAACCGAATACAATCATCA+GGG 0.704131 5_2:+5547459 Msa0751960:CDS
TGTGGCTTAGAATTGTACAA+TGG 0.725191 5_2:+5547647 Msa0751960:CDS
GAGTCAATGGATCTTTACTG+CGG 0.732097 5_2:-5547753 None:intergenic
GCTCATGGAAGTACATTGTG+GGG 0.748013 5_2:+5544785 Msa0751960:CDS
GGTTATGTATCCAACCACAG+AGG 0.789941 5_2:+5544469 Msa0751960:intron
GGTTGTTGAATCCAACAACG+GGG 0.798806 5_2:-5547442 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCCTATTTATAATATATAT+GGG + chr5_2:5544333-5544352 Msa0751960:CDS 10.0%
!! TATTAACTAATAATATTCTA+AGG + chr5_2:5547083-5547102 Msa0751960:intron 10.0%
!!! TGAATTTTTGTTAAAAAAAA+TGG + chr5_2:5547269-5547288 Msa0751960:intron 10.0%
!!! GAATTTTTGTTAAAAAAAAT+GGG + chr5_2:5547270-5547289 Msa0751960:intron 10.0%
!!! AATTTTTGTTAAAAAAAATG+GGG + chr5_2:5547271-5547290 Msa0751960:intron 10.0%
!! CTTCCTATTTATAATATATA+TGG + chr5_2:5544332-5544351 Msa0751960:CDS 15.0%
!! TCCTATTTATAATATATATG+GGG + chr5_2:5544334-5544353 Msa0751960:CDS 15.0%
!!! ATAACAATTTTAACTTTCTA+TGG - chr5_2:5546165-5546184 None:intergenic 15.0%
!!! TTTTTTGAAATAAAGTCATA+TGG - chr5_2:5546633-5546652 None:intergenic 15.0%
!! TGAAAATGATCATATAAAAA+GGG - chr5_2:5546806-5546825 None:intergenic 15.0%
!! TTGAAAATGATCATATAAAA+AGG - chr5_2:5546807-5546826 None:intergenic 15.0%
!! TTAAACATATTTATACACAA+AGG - chr5_2:5546904-5546923 None:intergenic 15.0%
!! ACATTGATATTATTAATAAC+AGG + chr5_2:5546948-5546967 Msa0751960:intron 15.0%
!! GGCAATAAAAAAATATAATA+AGG + chr5_2:5547879-5547898 Msa0751960:CDS 15.0%
!! AAAAATATAATAAGGCAAAT+AGG + chr5_2:5547887-5547906 Msa0751960:CDS 15.0%
!! ACCCCATATATATTATAAAT+AGG - chr5_2:5544338-5544357 None:intergenic 20.0%
!! TACTAGAAATACAAAACAAA+AGG - chr5_2:5544975-5544994 None:intergenic 20.0%
!! TTATACTTCCAAAATAACTT+AGG + chr5_2:5545157-5545176 Msa0751960:intron 20.0%
!!! AAGATAAGTGTTGAATTTAA+AGG + chr5_2:5545207-5545226 Msa0751960:intron 20.0%
!! ACAAAAAATGATTCTGATTT+GGG + chr5_2:5545493-5545512 Msa0751960:CDS 20.0%
!!! AATACAATGACTTTTAGAAT+GGG - chr5_2:5546349-5546368 None:intergenic 20.0%
!!! AAATACAATGACTTTTAGAA+TGG - chr5_2:5546350-5546369 None:intergenic 20.0%
!! TGTCATAAAAATAAGTCATA+TGG - chr5_2:5546664-5546683 None:intergenic 20.0%
!! TAAGTATTAAGAAAAGTTCT+TGG + chr5_2:5546834-5546853 Msa0751960:intron 20.0%
!! TTATTAATAACAGGTGTATT+TGG + chr5_2:5546957-5546976 Msa0751960:intron 20.0%
!! TTTGGAAAACAAGTAATAAA+CGG + chr5_2:5546975-5546994 Msa0751960:intron 20.0%
!!! TGTAAATAGTCTTATAATTG+TGG + chr5_2:5547045-5547064 Msa0751960:intron 20.0%
!!! TTTTTTGTAGGAACATTTAT+TGG + chr5_2:5547416-5547435 Msa0751960:intron 20.0%
!!! AAGTATTTTACAGTAGTTAA+GGG - chr5_2:5547581-5547600 None:intergenic 20.0%
! AAATAGGAAGATAAAAAGAC+TGG - chr5_2:5544322-5544341 None:intergenic 25.0%
! TTATTTGATGAACACTGAAT+TGG - chr5_2:5544383-5544402 None:intergenic 25.0%
!!! AGATCTATACTTTTAAGATC+TGG + chr5_2:5545132-5545151 Msa0751960:intron 25.0%
!!! ACTTGTGTCTTTGAAATTTT+TGG + chr5_2:5545247-5545266 Msa0751960:intron 25.0%
!! ACCACTTACTACTATTTTAT+AGG + chr5_2:5545423-5545442 Msa0751960:intron 25.0%
! ACCTATAAAATAGTAGTAAG+TGG - chr5_2:5545427-5545446 None:intergenic 25.0%
! GACAAAAAATGATTCTGATT+TGG + chr5_2:5545492-5545511 Msa0751960:CDS 25.0%
! TCTGTAAATACATTTGGAAA+TGG + chr5_2:5545613-5545632 Msa0751960:CDS 25.0%
! AATGGTTTATATGATTCCAT+TGG + chr5_2:5545631-5545650 Msa0751960:CDS 25.0%
!! ATTGTTGTTGTTATTAACAG+AGG + chr5_2:5546208-5546227 Msa0751960:intron 25.0%
!! TATGGATTGTCTAATAACAA+TGG + chr5_2:5546311-5546330 Msa0751960:intron 25.0%
! ACCTATTAAGATGAATAAGT+GGG - chr5_2:5546401-5546420 None:intergenic 25.0%
! TTTATACACAAAGGACAATT+TGG - chr5_2:5546895-5546914 None:intergenic 25.0%
!!! AGTGCAATTTGATTTTTTGT+AGG + chr5_2:5547404-5547423 Msa0751960:intron 25.0%
!!! GAAGTATTTTACAGTAGTTA+AGG - chr5_2:5547582-5547601 None:intergenic 25.0%
! ATTATATCTTCATAAAGCCT+AGG - chr5_2:5547778-5547797 None:intergenic 25.0%
! ATTGAAGAGATAGAACAAAT+AGG + chr5_2:5547796-5547815 Msa0751960:CDS 25.0%
! TTGAAGAGATAGAACAAATA+GGG + chr5_2:5547797-5547816 Msa0751960:CDS 25.0%
!!! ATTTCTATTTTTTCCCCAAT+GGG - chr5_2:5547845-5547864 None:intergenic 25.0%
! AAATAGAAATGTAGGATTTG+TGG + chr5_2:5547855-5547874 Msa0751960:CDS 25.0%
! AATAGAAATGTAGGATTTGT+GGG + chr5_2:5547856-5547875 Msa0751960:CDS 25.0%
ATTAGTAGTCCATTATCATC+AGG - chr5_2:5544590-5544609 None:intergenic 30.0%
TGTCAAATTGTTGAGAATGA+CGG + chr5_2:5544646-5544665 Msa0751960:CDS 30.0%
ATTGAGAGAGATCATTAATG+AGG + chr5_2:5544685-5544704 Msa0751960:intron 30.0%
! TTAGTGTGCCTAAGTTATTT+TGG - chr5_2:5545168-5545187 None:intergenic 30.0%
!! TACAAGTTACACTCTAGTTT+TGG + chr5_2:5545370-5545389 Msa0751960:intron 30.0%
!!! ACAAGTTACACTCTAGTTTT+GGG + chr5_2:5545371-5545390 Msa0751960:intron 30.0%
TTTATAGGTTACCCTACAAT+TGG + chr5_2:5545438-5545457 Msa0751960:intron 30.0%
! GGTGATGAATTGATTACTTT+TGG + chr5_2:5545514-5545533 Msa0751960:CDS 30.0%
ATGGTATCCAAATCAACAAA+AGG + chr5_2:5545564-5545583 Msa0751960:CDS 30.0%
!! TAAAGAGCCTTTTGTTGATT+TGG - chr5_2:5545574-5545593 None:intergenic 30.0%
CCTATTAAGATGAATAAGTG+GGG - chr5_2:5546400-5546419 None:intergenic 30.0%
CACCTATTAAGATGAATAAG+TGG - chr5_2:5546402-5546421 None:intergenic 30.0%
GTTCGAACTAAGTATTTAGA+AGG - chr5_2:5546529-5546548 None:intergenic 30.0%
ACCACTAAATCAATCCAAAT+GGG + chr5_2:5547215-5547234 Msa0751960:intron 30.0%
!!! GACTTATTTTGAAACCCATT+TGG - chr5_2:5547232-5547251 None:intergenic 30.0%
AATGCTGTATCGTAATTGAA+TGG - chr5_2:5547551-5547570 None:intergenic 30.0%
! TGTTAAAAAGCTTGTTCAGT+TGG + chr5_2:5547610-5547629 Msa0751960:intron 30.0%
CAAATAGGGTTGTTCAAATA+TGG + chr5_2:5547811-5547830 Msa0751960:CDS 30.0%
!!! TTTCTATTTTTTCCCCAATG+GGG - chr5_2:5547844-5547863 None:intergenic 30.0%
!!! CATTTCTATTTTTTCCCCAA+TGG - chr5_2:5547846-5547865 None:intergenic 30.0%
TGGGGAAAAAATAGAAATGT+AGG + chr5_2:5547847-5547866 Msa0751960:CDS 30.0%
ATAGAAATGTAGGATTTGTG+GGG + chr5_2:5547857-5547876 Msa0751960:CDS 30.0%
! TAAGGCAAATAGGTTTTTGA+AGG + chr5_2:5547897-5547916 Msa0751960:CDS 30.0%
GGAGTGACAATATTAAAAGA+TGG + chr5_2:5547991-5548010 Msa0751960:CDS 30.0%
ATTAAAAGATGGATGTGCAT+TGG + chr5_2:5548002-5548021 Msa0751960:CDS 30.0%
!!! TGCAGAAGTAGTTCTTTTTT+GGG - chr5_2:5548065-5548084 None:intergenic 30.0%
AGAATCTATAAGGATGCAAA+GGG + chr5_2:5548093-5548112 Msa0751960:CDS 30.0%
!!! TGACATCGATTTTCAACACA+CGG - chr5_2:5544631-5544650 None:intergenic 35.0%
ATGTGTTACATACTCATGCA+CGG - chr5_2:5544822-5544841 None:intergenic 35.0%
ATGTGAAGATGGATATGCTA+AGG + chr5_2:5544865-5544884 Msa0751960:CDS 35.0%
AATGCAGCCAGAATTTCTTT+AGG + chr5_2:5544920-5544939 Msa0751960:CDS 35.0%
ATGCAGCCAGAATTTCTTTA+GGG + chr5_2:5544921-5544940 Msa0751960:CDS 35.0%
AAGAACCCCTAAAGAAATTC+TGG - chr5_2:5544930-5544949 None:intergenic 35.0%
! AGAATTTCTTTAGGGGTTCT+TGG + chr5_2:5544929-5544948 Msa0751960:CDS 35.0%
ATGAATTTGCGGATGTAACA+TGG + chr5_2:5545545-5545564 Msa0751960:CDS 35.0%
CGTGTCTCTGTAAATACATT+TGG + chr5_2:5545607-5545626 Msa0751960:CDS 35.0%
! AGTTCTAGCAAGTGTTAATG+TGG - chr5_2:5545677-5545696 None:intergenic 35.0%
! TTAACACTTGCTAGAACTAC+AGG + chr5_2:5545679-5545698 Msa0751960:CDS 35.0%
AAAGTTGACCACTGAAACAT+TGG + chr5_2:5546277-5546296 Msa0751960:intron 35.0%
CCCCACTTATTCATCTTAAT+AGG + chr5_2:5546397-5546416 Msa0751960:intron 35.0%
TCATACTCTCGCTTAATGAA+TGG + chr5_2:5546455-5546474 Msa0751960:intron 35.0%
! TTGGATTGATTTAGTGGTGT+TGG - chr5_2:5547213-5547232 None:intergenic 35.0%
CACCACTAAATCAATCCAAA+TGG + chr5_2:5547214-5547233 Msa0751960:intron 35.0%
! ACCCATTTGGATTGATTTAG+TGG - chr5_2:5547219-5547238 None:intergenic 35.0%
AACAACCGAATACAATCATC+AGG + chr5_2:5547458-5547477 Msa0751960:CDS 35.0%
ACAACCGAATACAATCATCA+GGG + chr5_2:5547459-5547478 Msa0751960:CDS 35.0%
ATGTCCCTGATGATTGTATT+CGG - chr5_2:5547466-5547485 None:intergenic 35.0%
AAATGAGCACAGCTTGTATA+GGG + chr5_2:5547507-5547526 Msa0751960:CDS 35.0%
TATAGGGGACTCAAGAATTA+AGG + chr5_2:5547523-5547542 Msa0751960:CDS 35.0%
ATAGGGGACTCAAGAATTAA+GGG + chr5_2:5547524-5547543 Msa0751960:CDS 35.0%
TGTGGCTTAGAATTGTACAA+TGG + chr5_2:5547647-5547666 Msa0751960:CDS 35.0%
TGCGTTATGTTACAACTTCT+AGG + chr5_2:5547678-5547697 Msa0751960:intron 35.0%
GCGTTATGTTACAACTTCTA+GGG + chr5_2:5547679-5547698 Msa0751960:intron 35.0%
!! AACTTCTAGGGCATATACTT+GGG + chr5_2:5547691-5547710 Msa0751960:intron 35.0%
ATAGGGTTGTTCAAATATGG+AGG + chr5_2:5547814-5547833 Msa0751960:CDS 35.0%
TAGGGTTGTTCAAATATGGA+GGG + chr5_2:5547815-5547834 Msa0751960:CDS 35.0%
TAGAAATGTAGGATTTGTGG+GGG + chr5_2:5547858-5547877 Msa0751960:CDS 35.0%
TCACTAGAGAAAAGTCTCTT+CGG - chr5_2:5547940-5547959 None:intergenic 35.0%
! AGAGACTTTTCTCTAGTGAT+TGG + chr5_2:5547941-5547960 Msa0751960:CDS 35.0%
!!! CTTTTTTAAGTCCAAGCACT+TGG - chr5_2:5547972-5547991 None:intergenic 35.0%
CAAGTGCTTGGACTTAAAAA+AGG + chr5_2:5547970-5547989 Msa0751960:CDS 35.0%
!!! GCAGAAGTAGTTCTTTTTTG+GGG - chr5_2:5548064-5548083 None:intergenic 35.0%
!!! CTGCAGAAGTAGTTCTTTTT+TGG - chr5_2:5548066-5548085 None:intergenic 35.0%
CAGAATCTATAAGGATGCAA+AGG + chr5_2:5548092-5548111 Msa0751960:CDS 35.0%
TGCACCATCACGAATTCATA+TGG + chr5_2:5544410-5544429 Msa0751960:CDS 40.0%
! CTAGCTTGTCCTGATGATAA+TGG + chr5_2:5544578-5544597 Msa0751960:CDS 40.0%
AGATCATTAATGAGGCTGCA+AGG + chr5_2:5544693-5544712 Msa0751960:intron 40.0%
CTCTGCCAAATACACCATAT+TGG + chr5_2:5544726-5544745 Msa0751960:CDS 40.0%
TGCCAAATACACCATATTGG+TGG + chr5_2:5544729-5544748 Msa0751960:CDS 40.0%
GCCAAATACACCATATTGGT+GGG + chr5_2:5544730-5544749 Msa0751960:CDS 40.0%
CCAAATACACCATATTGGTG+GGG + chr5_2:5544731-5544750 Msa0751960:CDS 40.0%
ATGGTTAAACCCCACCAATA+TGG - chr5_2:5544743-5544762 None:intergenic 40.0%
TATTGGTGGGGTTTAACCAT+TGG + chr5_2:5544743-5544762 Msa0751960:CDS 40.0%
! TGCTCATGGAAGTACATTGT+GGG + chr5_2:5544784-5544803 Msa0751960:CDS 40.0%
ATTAGAATAGTTAGCCCTGC+AGG + chr5_2:5544842-5544861 Msa0751960:CDS 40.0%
! TTCTGGCTGCATTAAGATCT+TGG - chr5_2:5544913-5544932 None:intergenic 40.0%
TGCAGCCAGAATTTCTTTAG+GGG + chr5_2:5544922-5544941 Msa0751960:CDS 40.0%
!! GGTTCTTGGAGTTATTTCTC+AGG + chr5_2:5544943-5544962 Msa0751960:intron 40.0%
TGTAAGAGATCGCTTGAAGA+GGG - chr5_2:5545467-5545486 None:intergenic 40.0%
ATGTAAGAGATCGCTTGAAG+AGG - chr5_2:5545468-5545487 None:intergenic 40.0%
TGGCAACAAGCATGAATTTG+CGG + chr5_2:5545534-5545553 Msa0751960:CDS 40.0%
CACTCCCAAGCTAAAGATAT+CGG - chr5_2:5546140-5546159 None:intergenic 40.0%
GAAGCAACACACGATACTAA+CGG + chr5_2:5546239-5546258 Msa0751960:intron 40.0%
TATCGAACCTGATACTTGAG+AGG + chr5_2:5547167-5547186 Msa0751960:intron 40.0%
TTTATTGGATACCCCGTTGT+TGG + chr5_2:5547431-5547450 Msa0751960:CDS 40.0%
TCGGTTGTTGAATCCAACAA+CGG - chr5_2:5547447-5547466 None:intergenic 40.0%
ACAATCATCAGGGACATGTT+TGG + chr5_2:5547469-5547488 Msa0751960:CDS 40.0%
AGGGACATGTTTGGATAGTT+TGG + chr5_2:5547478-5547497 Msa0751960:CDS 40.0%
CAAATGAGCACAGCTTGTAT+AGG + chr5_2:5547506-5547525 Msa0751960:CDS 40.0%
AATGAGCACAGCTTGTATAG+GGG + chr5_2:5547508-5547527 Msa0751960:CDS 40.0%
!! CAACTTCTAGGGCATATACT+TGG + chr5_2:5547690-5547709 Msa0751960:intron 40.0%
GAGTCAATGGATCTTTACTG+CGG - chr5_2:5547756-5547775 None:intergenic 40.0%
!! GTAAAGATCCATTGACTCCT+AGG + chr5_2:5547758-5547777 Msa0751960:CDS 40.0%
TCATAAAGCCTAGGAGTCAA+TGG - chr5_2:5547769-5547788 None:intergenic 40.0%
AAAGATGGATGTGCATTGGA+AGG + chr5_2:5548006-5548025 Msa0751960:CDS 40.0%
AAGATGGATGTGCATTGGAA+GGG + chr5_2:5548007-5548026 Msa0751960:CDS 40.0%
GAACACTGAATTGGATCTGC+TGG - chr5_2:5544374-5544393 None:intergenic 45.0%
CACGCCATATGAATTCGTGA+TGG - chr5_2:5544417-5544436 None:intergenic 45.0%
AGCTCTGCAAATGCTTCGAT+CGG - chr5_2:5544444-5544463 None:intergenic 45.0%
AAGCATTTGCAGAGCTAGCA+AGG + chr5_2:5544448-5544467 Msa0751960:intron 45.0%
GGTTATGTATCCAACCACAG+AGG + chr5_2:5544469-5544488 Msa0751960:intron 45.0%
TATGTATCCAACCACAGAGG+CGG + chr5_2:5544472-5544491 Msa0751960:CDS 45.0%
! TCATCAGGACAAGCTAGCTT+TGG - chr5_2:5544575-5544594 None:intergenic 45.0%
TTGAGAATGACGGTAGAGAG+CGG + chr5_2:5544656-5544675 Msa0751960:intron 45.0%
TGAGGCTGCAAGGTTTGAAA+TGG + chr5_2:5544703-5544722 Msa0751960:intron 45.0%
CCCCACCAATATGGTGTATT+TGG - chr5_2:5544734-5544753 None:intergenic 45.0%
AGTGCTAATTAGGCCACCAA+TGG - chr5_2:5544762-5544781 None:intergenic 45.0%
! ATTGGTGGCCTAATTAGCAC+TGG + chr5_2:5544761-5544780 Msa0751960:CDS 45.0%
CATGAGCACCAGTGCTAATT+AGG - chr5_2:5544772-5544791 None:intergenic 45.0%
!! CTAATTAGCACTGGTGCTCA+TGG + chr5_2:5544770-5544789 Msa0751960:CDS 45.0%
! GTGCTCATGGAAGTACATTG+TGG + chr5_2:5544783-5544802 Msa0751960:CDS 45.0%
! GCTCATGGAAGTACATTGTG+GGG + chr5_2:5544785-5544804 Msa0751960:CDS 45.0%
! GGAAGTACATTGTGGGGTAA+AGG + chr5_2:5544791-5544810 Msa0751960:CDS 45.0%
ATCCATCTTCACATCCTGCA+GGG - chr5_2:5544859-5544878 None:intergenic 45.0%
TATCCATCTTCACATCCTGC+AGG - chr5_2:5544860-5544879 None:intergenic 45.0%
GAAGAGGGGTTCCAATTGTA+GGG - chr5_2:5545452-5545471 None:intergenic 45.0%
TGAAGAGGGGTTCCAATTGT+AGG - chr5_2:5545453-5545472 None:intergenic 45.0%
GTAAGAGATCGCTTGAAGAG+GGG - chr5_2:5545466-5545485 None:intergenic 45.0%
AGCGACCGATATCTTTAGCT+TGG + chr5_2:5546132-5546151 Msa0751960:intron 45.0%
! GCGACCGATATCTTTAGCTT+GGG + chr5_2:5546133-5546152 Msa0751960:intron 45.0%
!! CGATATCTTTAGCTTGGGAG+TGG + chr5_2:5546138-5546157 Msa0751960:intron 45.0%
TTGACCACTGAAACATTGGC+AGG + chr5_2:5546281-5546300 Msa0751960:intron 45.0%
AATGCCTGCCAATGTTTCAG+TGG - chr5_2:5546288-5546307 None:intergenic 45.0%
! ACATTGGCAGGCATTGCTTA+TGG + chr5_2:5546293-5546312 Msa0751960:intron 45.0%
GAGTCATCCTCTCAAGTATC+AGG - chr5_2:5547177-5547196 None:intergenic 45.0%
GGTTGTTGAATCCAACAACG+GGG - chr5_2:5547445-5547464 None:intergenic 45.0%
CGGTTGTTGAATCCAACAAC+GGG - chr5_2:5547446-5547465 None:intergenic 45.0%
GGGAAAAACAGAAGATGCTG+TGG + chr5_2:5547711-5547730 Msa0751960:CDS 45.0%
AATATGGAGGGTTACCCCAT+TGG + chr5_2:5547827-5547846 Msa0751960:CDS 45.0%
ATATGGAGGGTTACCCCATT+GGG + chr5_2:5547828-5547847 Msa0751960:CDS 45.0%
AAGAACTACTTCTGCAGACC+AGG + chr5_2:5548069-5548088 Msa0751960:CDS 45.0%
CAGACCAGGCAGAATCTATA+AGG + chr5_2:5548083-5548102 Msa0751960:CDS 45.0%
GCATCCTTATAGATTCTGCC+TGG - chr5_2:5548090-5548109 None:intergenic 45.0%
!!! ATAAGAAAAATATTATTTTA+TGG - chr5_2:5546038-5546057 None:intergenic 5.0%
!!! ATAAAATTTAATATATTTTG+AGG - chr5_2:5546499-5546518 None:intergenic 5.0%
CACTGAATTGGATCTGCTGG+AGG - chr5_2:5544371-5544390 None:intergenic 50.0%
CTCTGCAAATGCTTCGATCG+GGG - chr5_2:5544442-5544461 None:intergenic 50.0%
GCTCTGCAAATGCTTCGATC+GGG - chr5_2:5544443-5544462 None:intergenic 50.0%
TGGTGGGGTTTAACCATTGG+TGG + chr5_2:5544746-5544765 Msa0751960:CDS 50.0%
!! AGGTGTTGAGCGAAGTCCAA+TGG - chr5_2:5545650-5545669 None:intergenic 50.0%
TGGACTTCGCTCAACACCTT+CGG + chr5_2:5545651-5545670 Msa0751960:CDS 50.0%
GCAAGTGTTAATGTGGCCGA+AGG - chr5_2:5545670-5545689 None:intergenic 50.0%
GCTTGTTCAGTTGGAGCCAA+AGG + chr5_2:5547619-5547638 Msa0751960:intron 50.0%
TCTAAGCCACACAGTGCCTT+TGG - chr5_2:5547638-5547657 None:intergenic 50.0%
TATGGAGGGTTACCCCATTG+GGG + chr5_2:5547829-5547848 Msa0751960:CDS 50.0%
GATTGGACAGACCAAGTGCT+TGG + chr5_2:5547958-5547977 Msa0751960:CDS 50.0%
TGATATGAGCTCCGCCTCTG+TGG - chr5_2:5544486-5544505 None:intergenic 55.0%
AGCCCTGCAGGATGTGAAGA+TGG + chr5_2:5544854-5544873 Msa0751960:CDS 55.0%
!! TTGGAGCCAAAGGCACTGTG+TGG + chr5_2:5547629-5547648 Msa0751960:CDS 55.0%
ATGAGCTCCGCCTCTGTGGT+TGG - chr5_2:5544482-5544501 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 5544302 5548122 5544302 ID=Msa0751960;Name=Msa0751960
chr5_2 mRNA 5544302 5548122 5544302 ID=Msa0751960-mRNA-1;Parent=Msa0751960;Name=Msa0751960-mRNA-1;_AED=0.07;_eAED=0.09;_QI=0|0|0|1|0.14|0.25|8|0|502
chr5_2 exon 5544302 5544433 5544302 ID=Msa0751960-mRNA-1:exon:2192;Parent=Msa0751960-mRNA-1
chr5_2 exon 5544470 5544667 5544470 ID=Msa0751960-mRNA-1:exon:2193;Parent=Msa0751960-mRNA-1
chr5_2 exon 5544672 5544679 5544672 ID=Msa0751960-mRNA-1:exon:2194;Parent=Msa0751960-mRNA-1
chr5_2 exon 5544715 5544952 5544715 ID=Msa0751960-mRNA-1:exon:2195;Parent=Msa0751960-mRNA-1
chr5_2 exon 5545445 5545700 5545445 ID=Msa0751960-mRNA-1:exon:2196;Parent=Msa0751960-mRNA-1
chr5_2 exon 5547426 5547622 5547426 ID=Msa0751960-mRNA-1:exon:2197;Parent=Msa0751960-mRNA-1
chr5_2 exon 5547629 5547685 5547629 ID=Msa0751960-mRNA-1:exon:2198;Parent=Msa0751960-mRNA-1
chr5_2 exon 5547700 5548122 5547700 ID=Msa0751960-mRNA-1:exon:2199;Parent=Msa0751960-mRNA-1
chr5_2 CDS 5544302 5544433 5544302 ID=Msa0751960-mRNA-1:cds;Parent=Msa0751960-mRNA-1
chr5_2 CDS 5544470 5544667 5544470 ID=Msa0751960-mRNA-1:cds;Parent=Msa0751960-mRNA-1
chr5_2 CDS 5544672 5544679 5544672 ID=Msa0751960-mRNA-1:cds;Parent=Msa0751960-mRNA-1
chr5_2 CDS 5544715 5544952 5544715 ID=Msa0751960-mRNA-1:cds;Parent=Msa0751960-mRNA-1
chr5_2 CDS 5545445 5545700 5545445 ID=Msa0751960-mRNA-1:cds;Parent=Msa0751960-mRNA-1
chr5_2 CDS 5547426 5547622 5547426 ID=Msa0751960-mRNA-1:cds;Parent=Msa0751960-mRNA-1
chr5_2 CDS 5547629 5547685 5547629 ID=Msa0751960-mRNA-1:cds;Parent=Msa0751960-mRNA-1
chr5_2 CDS 5547700 5548122 5547700 ID=Msa0751960-mRNA-1:cds;Parent=Msa0751960-mRNA-1
Gene Sequence

>Msa0751960

AAAACAAGAATTCAAGTCCAGTCTTTTTATCTTCCTATTTATAATATATATGGGGTAATTTCAACTCCTCCAGCAGATCCAATTCAGTGTTCATCAAATAATACAAACTGCACCATCACGAATTCATATGGCGTTATGTATCCAACCACAGAGGCGGAGCTCATATCAATAGTCGCGTTAGCTTCAAAAAACAACAGAAAAATGAAAGTTGCAACGCGCTTCTCTCACAGCATACCAAAGCTAGCTTGTCCTGATGATAATGGACTACTAATAAGCACAAAAAATCTGAACCGTGTGTTGAAAATCGATGTCAAATTGTTGAGAATGACGAGAGCGGTGTTTGAAATGGCTCTGCCAAATACACCATATTGGTGGGGTTTAACCATTGGTGGCCTAATTAGCACTGGTGCTCATGGAAGTACATTGTGGGGTAAAGGAAGTGCCGTGCATGAGTATGTAACACATATTAGAATAGTTAGCCCTGCAGGATGTGAAGATGGATATGCTAAGGTTAGAAATCTTAATGAATCTCACCAAGATCTTAATGCAGCCAGAATTTCTTTAGGGGTTCTTGGAGTTACCCTACAATTGGAACCCCTCTTCAAGCGATCTCTTACATATTTGACAAAAAATGATTCTGATTTGGGTGATGAATTGATTACTTTTGGCAACAAGCATGAATTTGCGGATGTAACATGGTATCCAAATCAACAAAAGGCTCTTTATAGAATTGATGATCGTGTCTCTGTAAATACATTTGGAAATGGTTTATATGATTCCATTGGACTTCGCTCAACACCTTCGGCCACATTAACACTTGCTAGAACTACAGGAACATTTATTGGATACCCCGTTGTTGGATTCAACAACCGAATACAATCATCAGGGACATGTTTGGATAGTTTGGATGATCAAATGAGCACAGCTTGTATAGGGGACTCAAGAATTAAGGGACCATTCAATTACGATACAGCATTTAGTATTCCCTTAACTACTGTAAAATACTTCATTGAAGATGTTAAAAAGCTTTTGGAGCCAAAGGCACTGTGTGGCTTAGAATTGTACAATGGAATTCTCATGCGTTATGGCATATACTTGGGAAAAACAGAAGATGCTGTGGAATTTGATATCATATATTACCGCAGTAAAGATCCATTGACTCCTAGGCTTTATGAAGATATAATTGAAGAGATAGAACAAATAGGGTTGTTCAAATATGGAGGGTTACCCCATTGGGGAAAAAATAGAAATGTAGGATTTGTGGGGGCAATAAAAAAATATAATAAGGCAAATAGGTTTTTGAAGGTTAAAAAGAAATATGATCCGAAGAGACTTTTCTCTAGTGATTGGACAGACCAAGTGCTTGGACTTAAAAAAGGAGTGACAATATTAAAAGATGGATGTGCATTGGAAGGGTTGTGTATATGCTCACAAGATAGTCATTGTGCCCCAAAAAAGAACTACTTCTGCAGACCAGGCAGAATCTATAAGGATGCAAAGGGTTTGTAG

Protein sequence

>Msa0751960

KTRIQVQSFYLPIYNIYGVISTPPADPIQCSSNNTNCTITNSYGVMYPTTEAELISIVALASKNNRKMKVATRFSHSIPKLACPDDNGLLISTKNLNRVLKIDVKLLRMTRAVFEMALPNTPYWWGLTIGGLISTGAHGSTLWGKGSAVHEYVTHIRIVSPAGCEDGYAKVRNLNESHQDLNAARISLGVLGVTLQLEPLFKRSLTYLTKNDSDLGDELITFGNKHEFADVTWYPNQQKALYRIDDRVSVNTFGNGLYDSIGLRSTPSATLTLARTTGTFIGYPVVGFNNRIQSSGTCLDSLDDQMSTACIGDSRIKGPFNYDTAFSIPLTTVKYFIEDVKKLLEPKALCGLELYNGILMRYGIYLGKTEDAVEFDIIYYRSKDPLTPRLYEDIIEEIEQIGLFKYGGLPHWGKNRNVGFVGAIKKYNKANRFLKVKKKYDPKRLFSSDWTDQVLGLKKGVTILKDGCALEGLCICSQDSHCAPKKNYFCRPGRIYKDAKGL*