AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1297550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1297550 MtrunA17_Chr4g0054691 99.462 186 1 0 1 186 1 186 6.48e-140 387
Msa1297550 MtrunA17_Chr1g0210631 39.535 86 52 0 74 159 133 218 5.22e-18 78.2
Msa1297550 MtrunA17_Chr4g0026331 38.372 86 53 0 74 159 70 155 1.50e-17 75.5
Msa1297550 MtrunA17_Chr2g0277481 40.244 82 49 0 77 158 67 148 1.90e-17 75.1
Msa1297550 MtrunA17_Chr1g0210661 38.824 85 52 0 74 158 69 153 1.95e-17 75.5
Msa1297550 MtrunA17_Chr8g0380641 36.585 82 52 0 77 158 65 146 1.18e-16 73.2
Msa1297550 MtrunA17_Chr2g0321501 26.897 145 97 2 24 159 11 155 9.49e-16 70.9
Msa1297550 MtrunA17_Chr5g0394481 31.373 102 67 2 63 164 51 149 8.83e-13 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1297550 AT1G32550.1 67.760 183 53 3 6 186 3 181 1.83e-86 252
Msa1297550 AT1G32550.2 61.307 199 52 5 6 186 3 194 3.86e-79 234
Msa1297550 AT2G27510.1 40.244 82 49 0 78 159 74 155 3.48e-17 75.1
Msa1297550 AT1G10960.1 38.667 75 46 0 84 158 73 147 6.12e-15 68.9
Msa1297550 AT1G60950.1 30.702 114 67 2 54 158 37 147 2.84e-14 67.0

Find 74 sgRNAs with CRISPR-Local

Find 414 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGGCTTTGTATTAATAAA+TGG 0.188342 8_3:-57957184 None:intergenic
CCCTTGACTCACAGGTATAT+TGG 0.273197 8_3:+57962522 Msa1297550:intron
TTTGCATAGTATAGAAGATT+TGG 0.283845 8_3:+57963052 Msa1297550:three_prime_UTR
TAGAAGATTTGGCATGCTTT+TGG 0.287361 8_3:+57963063 Msa1297550:three_prime_UTR
CAGGTATATTGGCTTCAATT+TGG 0.291335 8_3:+57962533 Msa1297550:intron
TCTACTTCAAGATCAGAGTA+TGG 0.311983 8_3:-57959752 None:intergenic
TTGTTACAATGTGGTTCAAT+AGG 0.320510 8_3:+57963089 Msa1297550:three_prime_UTR
CTTATCCATTACTGTGCGTT+TGG 0.350556 8_3:-57963159 None:intergenic
TAACGGAAGCAAACGATTAC+CGG 0.393000 8_3:+57957278 Msa1297550:CDS
ATAATGTGAGAAAATGAAAA+TGG 0.394552 8_3:-57962865 None:intergenic
AATCGAACAACAACTACTAC+TGG 0.397418 8_3:-57957161 None:intergenic
CTGACACGCACATAACTTAC+GGG 0.425566 8_3:-57957081 None:intergenic
CAGCAGTATGCAATATATAT+TGG 0.427410 8_3:-57957494 None:intergenic
TCTGTCATTGATGTACCTTT+TGG 0.447476 8_3:+57963120 Msa1297550:three_prime_UTR
TACACGTGTCAAGCAGCAAT+TGG 0.453007 8_3:+57957020 Msa1297550:five_prime_UTR
TCGTGTTCAGTGTTTGTGTT+TGG 0.462056 8_3:+57962914 Msa1297550:three_prime_UTR
TTACCCTTCCATTCGCCTGC+AGG 0.464055 8_3:+57957529 Msa1297550:CDS
TGCGCTGTTCGTATAAAGAA+TGG 0.468923 8_3:+57958800 Msa1297550:CDS
ACGTACCTGCTCTCTCAATT+CGG 0.472163 8_3:-57958858 None:intergenic
GCTGACACGCACATAACTTA+CGG 0.474547 8_3:-57957082 None:intergenic
CTTCCATTCGCCTGCAGGCA+TGG 0.476506 8_3:+57957534 Msa1297550:CDS
GTCGACGGTGGCAGCAGCGA+CGG 0.493828 8_3:+57957234 Msa1297550:CDS
CTATCGGTGCTACAGAGAAA+AGG 0.494887 8_3:-57962759 None:intergenic
CTGAACCAAACGCACAGTAA+TGG 0.497127 8_3:+57963154 Msa1297550:three_prime_UTR
TGGTGATGCTCCAACTCATA+AGG 0.497863 8_3:+57957309 Msa1297550:CDS
ATTAAACAGCCAGAGGCACT+TGG 0.500897 8_3:+57958827 Msa1297550:CDS
TTTGCTTCCGTTAGTCTCAC+CGG 0.515595 8_3:-57957268 None:intergenic
TACTACTGGGAATTCGAAGA+AGG 0.516293 8_3:-57957147 None:intergenic
CAAACGCACAGTAATGGATA+AGG 0.522361 8_3:+57963160 Msa1297550:three_prime_UTR
CTGCTGCCACCGTCGACTTG+CGG 0.523336 8_3:-57957228 None:intergenic
GCGCTGTTCGTATAAAGAAT+GGG 0.523958 8_3:+57958801 Msa1297550:CDS
AGATGATTACGCCTTGGAGT+TGG 0.525321 8_3:+57962683 Msa1297550:CDS
TGCCACCGTCGACTTGCGGA+GGG 0.528786 8_3:-57957224 None:intergenic
TTGGAAAAGAATCTAACGGT+TGG 0.533894 8_3:+57957039 Msa1297550:five_prime_UTR
TTACGCCTTGGAGTTGGCCA+TGG 0.537209 8_3:+57962689 Msa1297550:CDS
CTGCCACCGTCGACTTGCGG+AGG 0.539461 8_3:-57957225 None:intergenic
CATGCCTGCAGGCGAATGGA+AGG 0.545098 8_3:-57957533 None:intergenic
CTACTTCAAGATCAGAGTAT+GGG 0.545399 8_3:-57959751 None:intergenic
GAGCATCACCACTAGGATAC+CGG 0.547091 8_3:-57957297 None:intergenic
AAAGTAAGTACCATGCCTGC+AGG 0.550244 8_3:-57957544 None:intergenic
AAAGAAGTTAGAGTCCTTGG+AGG 0.553195 8_3:+57956983 Msa1297550:five_prime_UTR
TAATTCAAACCTCAGGTACA+AGG 0.558777 8_3:-57957372 None:intergenic
ATCTGCCGAATTGAGAGAGC+AGG 0.560872 8_3:+57958853 Msa1297550:CDS
GGAAAGAGATGATTACGCCT+TGG 0.577081 8_3:+57962677 Msa1297550:intron
ACGTCTTCAATATGAACTAT+CGG 0.579743 8_3:-57962775 None:intergenic
TCAGCATTGACTCAACCAAA+AGG 0.579919 8_3:-57963135 None:intergenic
GCCTGCTTACTCGTCACCCA+TGG 0.581117 8_3:-57962706 None:intergenic
TACGCCTTGGAGTTGGCCAT+GGG 0.581629 8_3:+57962690 Msa1297550:CDS
ATCGAACAACAACTACTACT+GGG 0.588470 8_3:-57957160 None:intergenic
GTCACCCATGGCCAACTCCA+AGG 0.593375 8_3:-57962694 None:intergenic
GCCATGGGTGACGAGTAAGC+AGG 0.593531 8_3:+57962705 Msa1297550:exon
ACTACTGGGAATTCGAAGAA+GGG 0.593926 8_3:-57957146 None:intergenic
TCACGAATTCCTTGTACCTG+AGG 0.597412 8_3:+57957363 Msa1297550:CDS
TAAAACCCTCCGCAAGTCGA+CGG 0.598675 8_3:+57957219 Msa1297550:CDS
AGAATACACATATAAACATG+AGG 0.606206 8_3:-57962994 None:intergenic
TTAAACAGCCAGAGGCACTT+GGG 0.610944 8_3:+57958828 Msa1297550:CDS
GTTTATATGTGTATTCTCTG+TGG 0.614176 8_3:+57963000 Msa1297550:three_prime_UTR
TCAAACACCGGTGAGACTAA+CGG 0.619410 8_3:+57957261 Msa1297550:CDS
TGAGTTGGAGCATCACCACT+AGG 0.621541 8_3:-57957304 None:intergenic
GCAATTGGAAAAGAATCTAA+CGG 0.626783 8_3:+57957035 Msa1297550:five_prime_UTR
AGAAACTCAAGATGAAGATG+AGG 0.630393 8_3:+57959772 Msa1297550:CDS
CTACTGGGAATTCGAAGAAG+GGG 0.636238 8_3:-57957145 None:intergenic
CGATCGTCAAAACTCCTCCA+AGG 0.637195 8_3:-57956997 None:intergenic
AACCCTCCGCAAGTCGACGG+TGG 0.642319 8_3:+57957222 Msa1297550:CDS
ATGCCTGCAGGCGAATGGAA+GGG 0.644285 8_3:-57957532 None:intergenic
GGTGCTACAGAGAAAAGGAA+AGG 0.645678 8_3:-57962754 None:intergenic
ACTTAGCTAAAGTCCTTGTG+AGG 0.648824 8_3:+57956955 Msa1297550:five_prime_UTR
AGCGACGGAGCTTCAAACAC+CGG 0.654626 8_3:+57957249 Msa1297550:CDS
GAATACACATATAAACATGA+GGG 0.663094 8_3:-57962993 None:intergenic
AACGATTACCGGTATCCTAG+TGG 0.663180 8_3:+57957289 Msa1297550:CDS
TGGGAAAATTAAACAGCCAG+AGG 0.663643 8_3:+57958820 Msa1297550:CDS
TATGAGTATCTGACACGTGT+TGG 0.664513 8_3:+57962799 Msa1297550:three_prime_UTR
TGAACTGTGACCTTATGAGT+TGG 0.666810 8_3:-57957319 None:intergenic
ACAGTTCACGATAGACAACG+AGG 0.785544 8_3:+57957334 Msa1297550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTTCAATTTTCATT+AGG + chr8_3:57958435-57958454 Msa1297550:intron 10.0%
!! AAATTGAATCTATATATAAT+TGG - chr8_3:57958536-57958555 None:intergenic 10.0%
!! AAATAGAAATAAAATGAATA+AGG - chr8_3:57960030-57960049 None:intergenic 10.0%
!! ATTATGATTTATTCAAATTT+AGG + chr8_3:57961693-57961712 Msa1297550:intron 10.0%
!! CAATTCAATAAAATAGTTTA+AGG - chr8_3:57957812-57957831 None:intergenic 15.0%
!!! TATATTGATGTTTTATTCTT+TGG - chr8_3:57958213-57958232 None:intergenic 15.0%
!! TATGTTAAAAATATCAAACT+TGG - chr8_3:57958399-57958418 None:intergenic 15.0%
!! ATAAAAAAAGTTCATAAACA+TGG - chr8_3:57958888-57958907 None:intergenic 15.0%
!!! ATGAACTTTTTTTATTGAAT+CGG + chr8_3:57958893-57958912 Msa1297550:intron 15.0%
!! ATAACATGTATAAAGTATAA+TGG - chr8_3:57959085-57959104 None:intergenic 15.0%
!!! TAATCATAACTTTCATTTTA+TGG + chr8_3:57959810-57959829 Msa1297550:intron 15.0%
!! AAATATTCAAGAATATTCAA+AGG - chr8_3:57959938-57959957 None:intergenic 15.0%
!!! ATATTCTTGAATATTTTACA+CGG + chr8_3:57959942-57959961 Msa1297550:intron 15.0%
!! ATACTAAAACTAATTAAACA+TGG - chr8_3:57960058-57960077 None:intergenic 15.0%
!!! TTTTTGTAATTTCAAATAGA+AGG - chr8_3:57960822-57960841 None:intergenic 15.0%
!!! AAAATTAAGTTGTTAGAAAA+GGG - chr8_3:57960944-57960963 None:intergenic 15.0%
!!! AAAAATTAAGTTGTTAGAAA+AGG - chr8_3:57960945-57960964 None:intergenic 15.0%
!!! TCATTTTATAATTAGTGTTT+AGG - chr8_3:57961173-57961192 None:intergenic 15.0%
!! TTCAAATTTAGGAATTATTT+AGG + chr8_3:57961704-57961723 Msa1297550:intron 15.0%
!!! ATATAATTTGTGTGTTAAAA+AGG - chr8_3:57962654-57962673 None:intergenic 15.0%
!! AAGAAAAAAGAAGAAGAAAA+TGG + chr8_3:57957117-57957136 Msa1297550:exon 20.0%
!! CACATTAACATTGATATATA+CGG - chr8_3:57957451-57957470 None:intergenic 20.0%
!!! TTTTTTTGAAGAAGCTAAAT+TGG - chr8_3:57957964-57957983 None:intergenic 20.0%
!!! ATGGATTTTCATATACTTTA+GGG + chr8_3:57958266-57958285 Msa1297550:intron 20.0%
!!! TTCAATTTTCATTAGGTTAT+TGG + chr8_3:57958442-57958461 Msa1297550:intron 20.0%
!!! TTTTATGAACCTATCATATT+TGG + chr8_3:57958470-57958489 Msa1297550:intron 20.0%
!!! TTTCCATATGTAATTTGTAA+TGG + chr8_3:57958500-57958519 Msa1297550:intron 20.0%
!! TATATATAATTGGTAGGTAA+GGG - chr8_3:57958526-57958545 None:intergenic 20.0%
!! TGAATCTATATATAATTGGT+AGG - chr8_3:57958532-57958551 None:intergenic 20.0%
!!! TGCTTATTTGATACTTTTTA+TGG + chr8_3:57958760-57958779 Msa1297550:intron 20.0%
!!! TATTTGATACTTTTTATGGT+AGG + chr8_3:57958764-57958783 Msa1297550:intron 20.0%
!!! AGTATATACGTGTTTTTTTT+TGG + chr8_3:57959314-57959333 Msa1297550:intron 20.0%
!! AATATACAAACAATCATAAG+AGG - chr8_3:57959435-57959454 None:intergenic 20.0%
!!! TTACATTTTGATTTCTTTGT+TGG + chr8_3:57959455-57959474 Msa1297550:intron 20.0%
!!! TAAGCAAAAAACTACTTTTT+AGG - chr8_3:57961095-57961114 None:intergenic 20.0%
!! TGGATAAAATTATACTTATC+CGG + chr8_3:57961862-57961881 Msa1297550:intron 20.0%
!!! TCGTATTATTTTCATATGTT+GGG - chr8_3:57962141-57962160 None:intergenic 20.0%
!!! TCATATTATTTTCTTTCTTC+TGG + chr8_3:57962251-57962270 Msa1297550:intron 20.0%
!! ACTATTCTAATCAAATATTG+TGG + chr8_3:57962277-57962296 Msa1297550:intron 20.0%
!! TTAACACACAAATTATATAC+AGG + chr8_3:57962656-57962675 Msa1297550:intron 20.0%
!! ATAATGTGAGAAAATGAAAA+TGG - chr8_3:57962868-57962887 None:intergenic 20.0%
! CCTAATTCAATAGTTATATG+AGG - chr8_3:57957618-57957637 None:intergenic 25.0%
! CCTCATATAACTATTGAATT+AGG + chr8_3:57957615-57957634 Msa1297550:intron 25.0%
!! AAGGATTCTACTTCATTTTA+AGG - chr8_3:57957793-57957812 None:intergenic 25.0%
! TTGAATGAGTACAATAAAGA+AGG + chr8_3:57958010-57958029 Msa1297550:intron 25.0%
! TTATAAATAAGAGAAGACCA+AGG - chr8_3:57958117-57958136 None:intergenic 25.0%
!!! GATGGATTTTCATATACTTT+AGG + chr8_3:57958265-57958284 Msa1297550:intron 25.0%
!! TGGATTTTCATATACTTTAG+GGG + chr8_3:57958267-57958286 Msa1297550:intron 25.0%
! AACTAGTTATTATGGCTTAT+GGG + chr8_3:57958320-57958339 Msa1297550:intron 25.0%
! AAAAATATCAAACTTGGTAC+TGG - chr8_3:57958393-57958412 None:intergenic 25.0%
! AAAACAGAACCAAATATGAT+AGG - chr8_3:57958482-57958501 None:intergenic 25.0%
! CTATATATAATTGGTAGGTA+AGG - chr8_3:57958527-57958546 None:intergenic 25.0%
! CAAACATATATCAATCTAGA+GGG - chr8_3:57958706-57958725 None:intergenic 25.0%
! ATCAAATAAGCAACCAAATA+AGG - chr8_3:57958752-57958771 None:intergenic 25.0%
! TTTCAAGATTAGAATGAGAA+TGG - chr8_3:57959034-57959053 None:intergenic 25.0%
! TACATGTTATTATAGAGTAG+AGG + chr8_3:57959095-57959114 Msa1297550:intron 25.0%
! AATGTGAACATGTTTAGTAT+TGG - chr8_3:57959177-57959196 None:intergenic 25.0%
! AATAAAGTAAACTTGTAGAC+AGG - chr8_3:57959211-57959230 None:intergenic 25.0%
! GTTTACTTTATTCATTTGAC+AGG + chr8_3:57959219-57959238 Msa1297550:intron 25.0%
!!! CGCATTCATATTTTAATAAC+TGG - chr8_3:57959346-57959365 None:intergenic 25.0%
!! TTTGTTGGTGTTTCAATTTA+AGG + chr8_3:57959470-57959489 Msa1297550:intron 25.0%
!! TTGTTGGTGTTTCAATTTAA+GGG + chr8_3:57959471-57959490 Msa1297550:intron 25.0%
!! TAACTACTATAGTGGAAAAA+GGG - chr8_3:57959590-57959609 None:intergenic 25.0%
!! TTAACTACTATAGTGGAAAA+AGG - chr8_3:57959591-57959610 None:intergenic 25.0%
!! TTTTGTTCCATTTCATTTTC+AGG + chr8_3:57959703-57959722 Msa1297550:intron 25.0%
!! TTTGTTCCATTTCATTTTCA+GGG + chr8_3:57959704-57959723 Msa1297550:intron 25.0%
! AAAATATCTCACATTACTTC+TGG + chr8_3:57959908-57959927 Msa1297550:intron 25.0%
!! TTGTTGATTAGATGACTAAT+TGG - chr8_3:57959989-57960008 None:intergenic 25.0%
! ATATGACTTTCAAAAAGCAA+GGG - chr8_3:57960099-57960118 None:intergenic 25.0%
! AATATGACTTTCAAAAAGCA+AGG - chr8_3:57960100-57960119 None:intergenic 25.0%
! TGTCAATGCAAAACAAAAAT+AGG - chr8_3:57960186-57960205 None:intergenic 25.0%
!! TAATTTGGAGATCTTGTTTA+AGG + chr8_3:57960212-57960231 Msa1297550:intron 25.0%
!! AATTTGGAGATCTTGTTTAA+GGG + chr8_3:57960213-57960232 Msa1297550:intron 25.0%
!!! ATGTTGGTAGTAATCTTAAT+AGG + chr8_3:57960267-57960286 Msa1297550:intron 25.0%
! AAATTAAAGCAGTCATATGT+CGG - chr8_3:57960332-57960351 None:intergenic 25.0%
!!! TACTTTTTATTGAACAAACG+CGG + chr8_3:57960367-57960386 Msa1297550:intron 25.0%
! ATAAGCTCTTGATTTATGTT+AGG + chr8_3:57960570-57960589 Msa1297550:intron 25.0%
! AAATTAAAGCAGTCATATGT+CGG - chr8_3:57960332-57960351 None:intergenic 25.0%
!!! TACTTTTTATTGAACAAACG+CGG + chr8_3:57960367-57960386 Msa1297550:intron 25.0%
! ATTTCAAATAGAAGGAGTTT+AGG - chr8_3:57960814-57960833 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - chr8_3:57961105-57961124 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+TGG + chr8_3:57961105-57961124 Msa1297550:intron 25.0%
!! TAATTAGTGTTTAGGATAGT+GGG - chr8_3:57961165-57961184 None:intergenic 25.0%
!! ATAATTAGTGTTTAGGATAG+TGG - chr8_3:57961166-57961185 None:intergenic 25.0%
!! TATGATGCTTTTCTATTTGT+TGG + chr8_3:57961226-57961245 Msa1297550:intron 25.0%
!!! ATCAATACTCTAGTTTTCTT+TGG + chr8_3:57961268-57961287 Msa1297550:intron 25.0%
! GTTATCACTGAAATTATTGT+TGG - chr8_3:57961493-57961512 None:intergenic 25.0%
! TAAACATGGAAATCAAATCA+AGG - chr8_3:57961574-57961593 None:intergenic 25.0%
! AGCTAAACAAGGAAATAATT+AGG - chr8_3:57961732-57961751 None:intergenic 25.0%
! GGATAAAATTATACTTATCC+GGG + chr8_3:57961863-57961882 Msa1297550:intron 25.0%
!! GTCGTATTATTTTCATATGT+TGG - chr8_3:57962142-57962161 None:intergenic 25.0%
! ATTGTGGTTGATTATTTAAC+CGG + chr8_3:57962293-57962312 Msa1297550:intron 25.0%
!!! TAAACTATGTTGTGTTTTTG+AGG + chr8_3:57962442-57962461 Msa1297550:intron 25.0%
!!! ACATGTTTTCTTTGATAATG+TGG + chr8_3:57962628-57962647 Msa1297550:intron 25.0%
! GAATACACATATAAACATGA+GGG - chr8_3:57962996-57963015 None:intergenic 25.0%
! AGAATACACATATAAACATG+AGG - chr8_3:57962997-57963016 None:intergenic 25.0%
! TTTGCATAGTATAGAAGATT+TGG + chr8_3:57963052-57963071 Msa1297550:three_prime_UTR 25.0%
!!! ACTTCTTTTTTTTCCTCACA+AGG - chr8_3:57956971-57956990 None:intergenic 30.0%
AAAAAAGAAGTTAGAGTCCT+TGG + chr8_3:57956980-57956999 Msa1297550:five_prime_UTR 30.0%
GCAATTGGAAAAGAATCTAA+CGG + chr8_3:57957035-57957054 Msa1297550:five_prime_UTR 30.0%
!! CGTGGCTTTGTATTAATAAA+TGG - chr8_3:57957187-57957206 None:intergenic 30.0%
AGATGATTAATTCAAACCTC+AGG - chr8_3:57957382-57957401 None:intergenic 30.0%
CAGCAGTATGCAATATATAT+TGG - chr8_3:57957497-57957516 None:intergenic 30.0%
AGGCAGTAATTTGAAAAAGA+TGG + chr8_3:57957685-57957704 Msa1297550:intron 30.0%
TTGAAAAAGATGGAAGTGAT+TGG + chr8_3:57957695-57957714 Msa1297550:intron 30.0%
AATTAGAGAGAATCTAGAGA+AGG + chr8_3:57958036-57958055 Msa1297550:intron 30.0%
CAATATGGGAAATATGAATG+TGG - chr8_3:57958144-57958163 None:intergenic 30.0%
AATGAGTCAAAGAGCTTAAA+GGG - chr8_3:57958168-57958187 None:intergenic 30.0%
TAATGAGTCAAAGAGCTTAA+AGG - chr8_3:57958169-57958188 None:intergenic 30.0%
TTTGACTCATTATAGCTACA+TGG + chr8_3:57958177-57958196 Msa1297550:intron 30.0%
TCTCTGCTATTAAGATGTTA+GGG + chr8_3:57958234-57958253 Msa1297550:intron 30.0%
! GACAGATTTTCATATGCTTT+AGG + chr8_3:57958297-57958316 Msa1297550:intron 30.0%
!! GCTTTAGGAACTAGTTATTA+TGG + chr8_3:57958312-57958331 Msa1297550:intron 30.0%
GAACTAGTTATTATGGCTTA+TGG + chr8_3:57958319-57958338 Msa1297550:intron 30.0%
ATTGGAGGGAATAATAGTTT+AGG + chr8_3:57958347-57958366 Msa1297550:intron 30.0%
TTGGAGGGAATAATAGTTTA+GGG + chr8_3:57958348-57958367 Msa1297550:intron 30.0%
TAGTTTAGGGACTAAATTGA+TGG + chr8_3:57958361-57958380 Msa1297550:intron 30.0%
!! GATATTTTTAACATACCCGT+AGG + chr8_3:57958404-57958423 Msa1297550:intron 30.0%
AAAAAATATCCTCTCTCCTA+CGG - chr8_3:57958423-57958442 None:intergenic 30.0%
ATCCATGTATAGTTGAAGTA+CGG + chr8_3:57958557-57958576 Msa1297550:intron 30.0%
AAATTTATCTTCCCTCCTAT+TGG + chr8_3:57958602-57958621 Msa1297550:intron 30.0%
AATTTATCTTCCCTCCTATT+GGG + chr8_3:57958603-57958622 Msa1297550:intron 30.0%
TAGATCATGTAATGCATCAT+TGG + chr8_3:57958653-57958672 Msa1297550:intron 30.0%
CCAAACATATATCAATCTAG+AGG - chr8_3:57958707-57958726 None:intergenic 30.0%
CCTCTAGATTGATATATGTT+TGG + chr8_3:57958704-57958723 Msa1297550:intron 30.0%
!!! TTGGTTTTTTATGCTATTCC+TGG + chr8_3:57958723-57958742 Msa1297550:intron 30.0%
TTCTTTAGCATCATTGAAGA+TGG - chr8_3:57958992-57959011 None:intergenic 30.0%
ATGTTATTATAGAGTAGAGG+AGG + chr8_3:57959098-57959117 Msa1297550:intron 30.0%
CAGGAAATAAGACATTGAAT+TGG + chr8_3:57959238-57959257 Msa1297550:intron 30.0%
!! TCTACTCAAACTCATTTTTC+TGG + chr8_3:57959403-57959422 Msa1297550:intron 30.0%
CTTAACTACTTGTTTGTGTT+AGG - chr8_3:57959498-57959517 None:intergenic 30.0%
AATATCTTCGTTCTGTTGTA+GGG - chr8_3:57959527-57959546 None:intergenic 30.0%
AAATATCTTCGTTCTGTTGT+AGG - chr8_3:57959528-57959547 None:intergenic 30.0%
!! CGAAGATATTTTTCAGCTTA+TGG + chr8_3:57959537-57959556 Msa1297550:intron 30.0%
GTAGTTGTTAACTACTATAG+TGG - chr8_3:57959598-57959617 None:intergenic 30.0%
TATAGTAGTTAACAACTACG+AGG + chr8_3:57959599-57959618 Msa1297550:intron 30.0%
AACAGAGAAATAAGAGACAT+TGG - chr8_3:57959666-57959685 None:intergenic 30.0%
! AATGTCTCTTATTTCTCTGT+TGG + chr8_3:57959665-57959684 Msa1297550:intron 30.0%
! AGTAATGTGAGATATTTTGC+AGG - chr8_3:57959906-57959925 None:intergenic 30.0%
! GAATATTTTACACGGTCTTT+AGG + chr8_3:57959950-57959969 Msa1297550:intron 30.0%
CTAATCAACAAAGCAATCTT+AGG + chr8_3:57959998-57960017 Msa1297550:intron 30.0%
TTGAAAGTCATATTAGACTC+AGG + chr8_3:57960106-57960125 Msa1297550:intron 30.0%
TTCTATTAAATGTGTCCATC+CGG - chr8_3:57960147-57960166 None:intergenic 30.0%
! GCATTGACAAGACTTTAATT+TGG + chr8_3:57960197-57960216 Msa1297550:intron 30.0%
AGATTACTACCAACATCTAT+TGG - chr8_3:57960263-57960282 None:intergenic 30.0%
! ACTTTTTATTGAACAAACGC+GGG + chr8_3:57960368-57960387 Msa1297550:intron 30.0%
AAGGAAATACAATAGAGAGA+TGG - chr8_3:57960694-57960713 None:intergenic 30.0%
! ACTTTTTATTGAACAAACGC+GGG + chr8_3:57960368-57960387 Msa1297550:intron 30.0%
AAGGAAATACAATAGAGAGA+TGG + chr8_3:57960694-57960713 Msa1297550:intron 30.0%
! TGAGAGCATATTGAGAAAAA+AGG - chr8_3:57961344-57961363 None:intergenic 30.0%
! TCTTTGTTTGTATGCTATTG+TGG + chr8_3:57961391-57961410 Msa1297550:intron 30.0%
!!! TTGGTTTTGTAATGTTAGCA+TGG + chr8_3:57961414-57961433 Msa1297550:intron 30.0%
TTCCCACTAATGAATTGTAA+TGG + chr8_3:57961517-57961536 Msa1297550:intron 30.0%
CACCATTACAATTCATTAGT+GGG - chr8_3:57961522-57961541 None:intergenic 30.0%
TCACCATTACAATTCATTAG+TGG - chr8_3:57961523-57961542 None:intergenic 30.0%
AAGAGGAAAACTGATAAACA+TGG - chr8_3:57961588-57961607 None:intergenic 30.0%
ATTAGGAAGTTTCAAACAAG+AGG - chr8_3:57961605-57961624 None:intergenic 30.0%
!!! GTGTGTAACATTACTGATTT+TGG + chr8_3:57961647-57961666 Msa1297550:intron 30.0%
!! ACTGATTTTGGTCAAATGAT+CGG + chr8_3:57961659-57961678 Msa1297550:intron 30.0%
GAAATTTCAGAGCAAGTTAA+AGG - chr8_3:57962211-57962230 None:intergenic 30.0%
ACGTCTTCAATATGAACTAT+CGG - chr8_3:57962778-57962797 None:intergenic 30.0%
GTTTATATGTGTATTCTCTG+TGG + chr8_3:57963000-57963019 Msa1297550:three_prime_UTR 30.0%
! TTTTGGATCTTGTTACAATG+TGG + chr8_3:57963080-57963099 Msa1297550:three_prime_UTR 30.0%
TTGTTACAATGTGGTTCAAT+AGG + chr8_3:57963089-57963108 Msa1297550:three_prime_UTR 30.0%
TTGGAAAAGAATCTAACGGT+TGG + chr8_3:57957039-57957058 Msa1297550:five_prime_UTR 35.0%
ATCGAACAACAACTACTACT+GGG - chr8_3:57957163-57957182 None:intergenic 35.0%
AATCGAACAACAACTACTAC+TGG - chr8_3:57957164-57957183 None:intergenic 35.0%
!!! GTTTTAGAAGGAAGATATCG+TGG - chr8_3:57957205-57957224 None:intergenic 35.0%
TAATTCAAACCTCAGGTACA+AGG - chr8_3:57957375-57957394 None:intergenic 35.0%
! TTTTCTACACATGCAACATC+TGG - chr8_3:57957420-57957439 None:intergenic 35.0%
TAAACGTGTTTGTGTCGTAT+TGG + chr8_3:57957724-57957743 Msa1297550:intron 35.0%
! ATTTCCATGCGTTATTTCCT+TGG + chr8_3:57958097-57958116 Msa1297550:intron 35.0%
ATGAGTCAAAGAGCTTAAAG+GGG - chr8_3:57958167-57958186 None:intergenic 35.0%
GTCTCTGCTATTAAGATGTT+AGG + chr8_3:57958233-57958252 Msa1297550:intron 35.0%
!! GATGTTAGGGATTAAGTTGA+TGG + chr8_3:57958247-57958266 Msa1297550:intron 35.0%
! TTATGGCTTATGGGCTAAAT+TGG + chr8_3:57958329-57958348 Msa1297550:intron 35.0%
AAAAATATCCTCTCTCCTAC+GGG - chr8_3:57958422-57958441 None:intergenic 35.0%
GGGCCATTACAAATTACATA+TGG - chr8_3:57958506-57958525 None:intergenic 35.0%
ATCCGTACTTCAACTATACA+TGG - chr8_3:57958562-57958581 None:intergenic 35.0%
ATGCATTACATGATCTACAC+AGG - chr8_3:57958650-57958669 None:intergenic 35.0%
CTATTCCTGGTTTCCTTATT+TGG + chr8_3:57958736-57958755 Msa1297550:intron 35.0%
CATCATTGAAGATGGTTGAT+GGG - chr8_3:57958984-57959003 None:intergenic 35.0%
CTTCAATGATGCTAAAGAAG+AGG + chr8_3:57958993-57959012 Msa1297550:intron 35.0%
!! AAAAGGGTGTTCATAGCAAA+TGG - chr8_3:57959574-57959593 None:intergenic 35.0%
GCATAACCCTGAAAATGAAA+TGG - chr8_3:57959713-57959732 None:intergenic 35.0%
CTACTTCAAGATCAGAGTAT+GGG - chr8_3:57959754-57959773 None:intergenic 35.0%
TCTACTTCAAGATCAGAGTA+TGG - chr8_3:57959755-57959774 None:intergenic 35.0%
AGAAACTCAAGATGAAGATG+AGG + chr8_3:57959772-57959791 Msa1297550:CDS 35.0%
CTGCTTAGTGATGATTTGAT+TGG - chr8_3:57959854-57959873 None:intergenic 35.0%
!! ACGGTCTTTAGGATATATAC+TGG + chr8_3:57959961-57959980 Msa1297550:intron 35.0%
CAAGGGTTTCAAAAGGAAAA+AGG - chr8_3:57960082-57960101 None:intergenic 35.0%
CAAAAAGCAAGGGTTTCAAA+AGG - chr8_3:57960089-57960108 None:intergenic 35.0%
ACATAAATCAAGAGCTAGTC+AGG - chr8_3:57960304-57960323 None:intergenic 35.0%
! CTTTTTATTGAACAAACGCG+GGG + chr8_3:57960369-57960388 Msa1297550:intron 35.0%
!! CAACAGTGGTTTGTTACAAA+GGG + chr8_3:57960402-57960421 Msa1297550:intron 35.0%
! GTTTGTTACAAAGGGAGAAA+AGG + chr8_3:57960410-57960429 Msa1297550:intron 35.0%
AAGGGAGAAAAGGAAATACA+AGG + chr8_3:57960420-57960439 Msa1297550:intron 35.0%
AGGGAGAAAAGGAAATACAA+GGG + chr8_3:57960421-57960440 Msa1297550:intron 35.0%
! GTTTGTTACAAAGGGAGAAA+AGG - chr8_3:57960410-57960429 None:intergenic 35.0%
!! CAACAGTGGTTTGTTACAAA+GGG - chr8_3:57960402-57960421 None:intergenic 35.0%
! CTTTTTATTGAACAAACGCG+GGG + chr8_3:57960369-57960388 Msa1297550:intron 35.0%
!! CATTTCTCAATAGGTTGGTT+GGG - chr8_3:57960771-57960790 None:intergenic 35.0%
!! TCATTTCTCAATAGGTTGGT+TGG - chr8_3:57960772-57960791 None:intergenic 35.0%
TGGAACAGCAGTTATGAAAT+GGG - chr8_3:57960868-57960887 None:intergenic 35.0%
CTAGCATAATTTCTCACGAT+GGG + chr8_3:57960915-57960934 Msa1297550:intron 35.0%
ATAATACACTATACTCCCTC+CGG + chr8_3:57961010-57961029 Msa1297550:intron 35.0%
TTGCTTATAAATGTGACTGG+AGG + chr8_3:57961108-57961127 Msa1297550:intron 35.0%
TGCTTATAAATGTGACTGGA+GGG + chr8_3:57961109-57961128 Msa1297550:intron 35.0%
!! AGAGTATTGATTGTCACAGT+TGG - chr8_3:57961259-57961278 None:intergenic 35.0%
TGTTTGTATGCTATTGTGGT+TGG + chr8_3:57961395-57961414 Msa1297550:intron 35.0%
! TAATGTTAGCATGGCATTGA+GGG + chr8_3:57961423-57961442 Msa1297550:intron 35.0%
CAGTAATGTTACACACAACA+AGG - chr8_3:57961643-57961662 None:intergenic 35.0%
! TAGAGAGCATAAGCTAAACA+AGG - chr8_3:57961743-57961762 None:intergenic 35.0%
TGCTCTCTAGATATCAGATT+TGG + chr8_3:57961754-57961773 Msa1297550:intron 35.0%
GCTCTCTAGATATCAGATTT+GGG + chr8_3:57961755-57961774 Msa1297550:intron 35.0%
TGCAGTTCGTACATCTAAAT+CGG + chr8_3:57961796-57961815 Msa1297550:intron 35.0%
AAGCTGTGTTTCTTTGTACT+CGG + chr8_3:57961914-57961933 Msa1297550:intron 35.0%
ATCCAGAATGAATGGTGTAA+AGG + chr8_3:57961970-57961989 Msa1297550:intron 35.0%
TCCAGAATGAATGGTGTAAA+GGG + chr8_3:57961971-57961990 Msa1297550:intron 35.0%
!!! CAGGTGTTTTTTGTGTCTTA+TGG - chr8_3:57962035-57962054 None:intergenic 35.0%
! AGTATGTTGTGTTCAAGTTC+AGG - chr8_3:57962054-57962073 None:intergenic 35.0%
ACACAACATACTGTCTATAG+AGG + chr8_3:57962062-57962081 Msa1297550:intron 35.0%
ATAGGTCCTAAAACAAACCA+TGG + chr8_3:57962106-57962125 Msa1297550:intron 35.0%
!!! CTTCATCCATGGTTTGTTTT+AGG - chr8_3:57962115-57962134 None:intergenic 35.0%
ACACTAACTCCTTATTGCAA+GGG + chr8_3:57962160-57962179 Msa1297550:intron 35.0%
! CCAACAAATGAACACTTTTC+CGG - chr8_3:57962315-57962334 None:intergenic 35.0%
CTTAGTAAGAGTCAACTTGA+GGG + chr8_3:57962345-57962364 Msa1297550:intron 35.0%
TTAGTAAGAGTCAACTTGAG+GGG + chr8_3:57962346-57962365 Msa1297550:intron 35.0%
!! CAGGTATATTGGCTTCAATT+TGG + chr8_3:57962533-57962552 Msa1297550:intron 35.0%
!! TTTGGACGTTATTTTGCAAG+AGG + chr8_3:57962551-57962570 Msa1297550:CDS 35.0%
TATATAACAGAACCTACCAC+TGG - chr8_3:57962578-57962597 None:intergenic 35.0%
! ATTCTCTGTGGTCTTTTTGT+TGG + chr8_3:57963012-57963031 Msa1297550:three_prime_UTR 35.0%
! TAGAAGATTTGGCATGCTTT+TGG + chr8_3:57963063-57963082 Msa1297550:three_prime_UTR 35.0%
! TCTGTCATTGATGTACCTTT+TGG + chr8_3:57963120-57963139 Msa1297550:three_prime_UTR 35.0%
ACTTAGCTAAAGTCCTTGTG+AGG + chr8_3:57956955-57956974 Msa1297550:five_prime_UTR 40.0%
AAAGAAGTTAGAGTCCTTGG+AGG + chr8_3:57956983-57957002 Msa1297550:five_prime_UTR 40.0%
ACTACTGGGAATTCGAAGAA+GGG - chr8_3:57957149-57957168 None:intergenic 40.0%
TACTACTGGGAATTCGAAGA+AGG - chr8_3:57957150-57957169 None:intergenic 40.0%
TAACGGAAGCAAACGATTAC+CGG + chr8_3:57957278-57957297 Msa1297550:CDS 40.0%
TGAACTGTGACCTTATGAGT+TGG - chr8_3:57957322-57957341 None:intergenic 40.0%
! GAGTACTGTTTGTGAAATGC+AGG + chr8_3:57957470-57957489 Msa1297550:intron 40.0%
TACCTAACACGATCATGACA+CGG + chr8_3:57957650-57957669 Msa1297550:intron 40.0%
TTGGTCTAGACACCAATAGA+TGG + chr8_3:57957743-57957762 Msa1297550:intron 40.0%
! ACACCAATAGATGGAAGTGT+CGG + chr8_3:57957752-57957771 Msa1297550:intron 40.0%
! ATTCTCACCGGTGTCAATTT+AGG + chr8_3:57957934-57957953 Msa1297550:intron 40.0%
! AATCTAGAGAAGGAGAGTAC+AGG + chr8_3:57958046-57958065 Msa1297550:intron 40.0%
AAGACCAAGGAAATAACGCA+TGG - chr8_3:57958104-57958123 None:intergenic 40.0%
AGAGCTTAAAGGGGCAATAT+GGG - chr8_3:57958158-57958177 None:intergenic 40.0%
AAGAGCTTAAAGGGGCAATA+TGG - chr8_3:57958159-57958178 None:intergenic 40.0%
AATCTAGAGGGAAACAGAAG+CGG - chr8_3:57958694-57958713 None:intergenic 40.0%
AGCAACCAAATAAGGAAACC+AGG - chr8_3:57958744-57958763 None:intergenic 40.0%
TGCGCTGTTCGTATAAAGAA+TGG + chr8_3:57958800-57958819 Msa1297550:CDS 40.0%
GCGCTGTTCGTATAAAGAAT+GGG + chr8_3:57958801-57958820 Msa1297550:CDS 40.0%
TGGGAAAATTAAACAGCCAG+AGG + chr8_3:57958820-57958839 Msa1297550:CDS 40.0%
GCATCATTGAAGATGGTTGA+TGG - chr8_3:57958985-57959004 None:intergenic 40.0%
! CCAACATCTATTGGTCTAAG+CGG - chr8_3:57960254-57960273 None:intergenic 40.0%
CCTTTGTAACAAACCACTGT+TGG - chr8_3:57960523-57960542 None:intergenic 40.0%
!! CCAACAGTGGTTTGTTACAA+AGG + chr8_3:57960401-57960420 Msa1297550:intron 40.0%
CTAAGCTCTCTAATTCCTAG+TGG + chr8_3:57960449-57960468 Msa1297550:intron 40.0%
TGTAACTGCTAGTAACCACT+AGG - chr8_3:57960467-57960486 None:intergenic 40.0%
!! CCAACAGTGGTTTGTTACAA+AGG - chr8_3:57960401-57960420 None:intergenic 40.0%
CCTTTGTAACAAACCACTGT+TGG + chr8_3:57960523-57960542 Msa1297550:intron 40.0%
GAGGAATTATCATCCAACAG+TGG - chr8_3:57960539-57960558 None:intergenic 40.0%
! CAACAGTGGTTAGTTGCAAA+GGG + chr8_3:57960667-57960686 Msa1297550:intron 40.0%
GTTAGTTGCAAAGGGAGAAA+AGG + chr8_3:57960675-57960694 Msa1297550:intron 40.0%
TGTAACAGCTAGTAACCACT+AGG + chr8_3:57960725-57960744 Msa1297550:intron 40.0%
CTAAGCTCTCTAATTCCTAG+TGG - chr8_3:57960449-57960468 None:intergenic 40.0%
TGGGTCATTTCTCAATAGGT+TGG - chr8_3:57960776-57960795 None:intergenic 40.0%
GGATTGGGTCATTTCTCAAT+AGG - chr8_3:57960780-57960799 None:intergenic 40.0%
! ATAGAAGGAGTTTAGGACAG+AGG - chr8_3:57960807-57960826 None:intergenic 40.0%
ACAGCAGTTATGAAATGGGA+CGG - chr8_3:57960864-57960883 None:intergenic 40.0%
CTGGAACAGCAGTTATGAAA+TGG - chr8_3:57960869-57960888 None:intergenic 40.0%
CATTTCATAACTGCTGTTCC+AGG + chr8_3:57960867-57960886 Msa1297550:intron 40.0%
CCATCGTGAGAAATTATGCT+AGG - chr8_3:57960917-57960936 None:intergenic 40.0%
CCTAGCATAATTTCTCACGA+TGG + chr8_3:57960914-57960933 Msa1297550:intron 40.0%
TGCTTATAAATGTGACCGGA+GGG - chr8_3:57961028-57961047 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG - chr8_3:57961029-57961048 None:intergenic 40.0%
GTAATGTTAGCATGGCATTG+AGG + chr8_3:57961422-57961441 Msa1297550:intron 40.0%
! AATGTTAGCATGGCATTGAG+GGG + chr8_3:57961424-57961443 Msa1297550:intron 40.0%
TGGTGATTTGATGTTAGCTG+TGG + chr8_3:57961537-57961556 Msa1297550:intron 40.0%
! GGAGAGTTCACTAAAGCATT+AGG - chr8_3:57961622-57961641 None:intergenic 40.0%
TAACTCGTCAAGTATAGACC+CGG - chr8_3:57961884-57961903 None:intergenic 40.0%
CTCCTACTATCCAGAATGAA+TGG + chr8_3:57961962-57961981 Msa1297550:intron 40.0%
CACCATTCATTCTGGATAGT+AGG - chr8_3:57961967-57961986 None:intergenic 40.0%
TCCCTTTACACCATTCATTC+TGG - chr8_3:57961975-57961994 None:intergenic 40.0%
AATGAATGGTGTAAAGGGAG+AGG + chr8_3:57961976-57961995 Msa1297550:intron 40.0%
ATGAATGGTGTAAAGGGAGA+GGG + chr8_3:57961977-57961996 Msa1297550:intron 40.0%
TGTGTCTTATGGTACAGAAG+CGG - chr8_3:57962024-57962043 None:intergenic 40.0%
!! GAGGTCTTTGAGATTCCTTT+CGG + chr8_3:57962081-57962100 Msa1297550:intron 40.0%
!! AGGTCTTTGAGATTCCTTTC+GGG + chr8_3:57962082-57962101 Msa1297550:intron 40.0%
TTGAGATTCCTTTCGGGAAT+AGG + chr8_3:57962088-57962107 Msa1297550:intron 40.0%
!!! TTTTAGGACCTATTCCCGAA+AGG - chr8_3:57962099-57962118 None:intergenic 40.0%
ATGTTGGGTAACTTCATCCA+TGG - chr8_3:57962126-57962145 None:intergenic 40.0%
GACACTAACTCCTTATTGCA+AGG + chr8_3:57962159-57962178 Msa1297550:intron 40.0%
CACTGATATCCCTTGCAATA+AGG - chr8_3:57962172-57962191 None:intergenic 40.0%
!! CCGGAAAAGTGTTCATTTGT+TGG + chr8_3:57962312-57962331 Msa1297550:intron 40.0%
GCTTAGTAAGAGTCAACTTG+AGG + chr8_3:57962344-57962363 Msa1297550:intron 40.0%
CCAATATACCTGTGAGTCAA+GGG - chr8_3:57962525-57962544 None:intergenic 40.0%
!! TTATTTTGCAAGAGGACCAG+TGG + chr8_3:57962559-57962578 Msa1297550:CDS 40.0%
TATGAGTATCTGACACGTGT+TGG + chr8_3:57962799-57962818 Msa1297550:three_prime_UTR 40.0%
TCGTGTTCAGTGTTTGTGTT+TGG + chr8_3:57962914-57962933 Msa1297550:three_prime_UTR 40.0%
!! TCAGCATTGACTCAACCAAA+AGG - chr8_3:57963138-57963157 None:intergenic 40.0%
CTTATCCATTACTGTGCGTT+TGG - chr8_3:57963162-57963181 None:intergenic 40.0%
!! CAAACGCACAGTAATGGATA+AGG + chr8_3:57963160-57963179 Msa1297550:three_prime_UTR 40.0%
TACACGTGTCAAGCAGCAAT+TGG + chr8_3:57957020-57957039 Msa1297550:five_prime_UTR 45.0%
CTGACACGCACATAACTTAC+GGG - chr8_3:57957084-57957103 None:intergenic 45.0%
GCTGACACGCACATAACTTA+CGG - chr8_3:57957085-57957104 None:intergenic 45.0%
CTACTGGGAATTCGAAGAAG+GGG - chr8_3:57957148-57957167 None:intergenic 45.0%
TCAAACACCGGTGAGACTAA+CGG + chr8_3:57957261-57957280 Msa1297550:CDS 45.0%
! TTTGCTTCCGTTAGTCTCAC+CGG - chr8_3:57957271-57957290 None:intergenic 45.0%
AACGATTACCGGTATCCTAG+TGG + chr8_3:57957289-57957308 Msa1297550:CDS 45.0%
! TGGTGATGCTCCAACTCATA+AGG + chr8_3:57957309-57957328 Msa1297550:CDS 45.0%
ACAGTTCACGATAGACAACG+AGG + chr8_3:57957334-57957353 Msa1297550:CDS 45.0%
TCACGAATTCCTTGTACCTG+AGG + chr8_3:57957363-57957382 Msa1297550:CDS 45.0%
AAAGTAAGTACCATGCCTGC+AGG - chr8_3:57957547-57957566 None:intergenic 45.0%
TCACAGCTAATGAACCCACT+TGG + chr8_3:57957849-57957868 Msa1297550:intron 45.0%
CACAGCTAATGAACCCACTT+GGG + chr8_3:57957850-57957869 Msa1297550:intron 45.0%
! TCACCGGTGTCAATTTAGGT+GGG + chr8_3:57957938-57957957 Msa1297550:intron 45.0%
! TGGCTTATGGGCTAAATTGG+AGG + chr8_3:57958332-57958351 Msa1297550:intron 45.0%
! GGCTTATGGGCTAAATTGGA+GGG + chr8_3:57958333-57958352 Msa1297550:intron 45.0%
TTAACATACCCGTAGGAGAG+AGG + chr8_3:57958411-57958430 Msa1297550:intron 45.0%
TGATTGTCGACGTTCCCAAT+AGG - chr8_3:57958620-57958639 None:intergenic 45.0%
!! ATTAAACAGCCAGAGGCACT+TGG + chr8_3:57958827-57958846 Msa1297550:CDS 45.0%
!! TTAAACAGCCAGAGGCACTT+GGG + chr8_3:57958828-57958847 Msa1297550:CDS 45.0%
ACGTACCTGCTCTCTCAATT+CGG - chr8_3:57958861-57958880 None:intergenic 45.0%
AGTAGCAATGCATGATGCTC+TGG + chr8_3:57958932-57958951 Msa1297550:intron 45.0%
CAGGATAATCCAAGTCAAGC+CGG + chr8_3:57960125-57960144 Msa1297550:intron 45.0%
ATAATCCAAGTCAAGCCGGA+TGG + chr8_3:57960129-57960148 Msa1297550:intron 45.0%
CCGCTTAGACCAATAGATGT+TGG + chr8_3:57960251-57960270 Msa1297550:intron 45.0%
GGGGAATTATCATCCAACAG+TGG + chr8_3:57960388-57960407 Msa1297550:intron 45.0%
GAGCTTATTGAACAAACGCG+AGG - chr8_3:57960558-57960577 None:intergenic 45.0%
GGGGAATTATCATCCAACAG+TGG + chr8_3:57960388-57960407 Msa1297550:intron 45.0%
CCTTTGCAACTAACCACTGT+TGG - chr8_3:57960669-57960688 None:intergenic 45.0%
! CCAACAGTGGTTAGTTGCAA+AGG + chr8_3:57960666-57960685 Msa1297550:intron 45.0%
GCATAATTTCTCACGATGGG+AGG + chr8_3:57960918-57960937 Msa1297550:intron 45.0%
! TGATTGTCACAGTTGGTGCA+CGG - chr8_3:57961252-57961271 None:intergenic 45.0%
ATGAAGCGTACAACAACAGC+AGG - chr8_3:57961303-57961322 None:intergenic 45.0%
! ATGTTAGCATGGCATTGAGG+GGG + chr8_3:57961425-57961444 Msa1297550:intron 45.0%
TGTAAAGGGAGAGGGAAACA+AGG + chr8_3:57961985-57962004 Msa1297550:intron 45.0%
GATGATGAGAAGATGCTCAG+AGG - chr8_3:57962233-57962252 None:intergenic 45.0%
TAAGAGTCAACTTGAGGGGA+TGG + chr8_3:57962350-57962369 Msa1297550:intron 45.0%
! ATTTGCTACCCTTGACTCAC+AGG + chr8_3:57962514-57962533 Msa1297550:intron 45.0%
CCCTTGACTCACAGGTATAT+TGG + chr8_3:57962522-57962541 Msa1297550:intron 45.0%
GCCAATATACCTGTGAGTCA+AGG - chr8_3:57962526-57962545 None:intergenic 45.0%
GGAAAGAGATGATTACGCCT+TGG + chr8_3:57962677-57962696 Msa1297550:intron 45.0%
AGATGATTACGCCTTGGAGT+TGG + chr8_3:57962683-57962702 Msa1297550:CDS 45.0%
! GGTGCTACAGAGAAAAGGAA+AGG - chr8_3:57962757-57962776 None:intergenic 45.0%
!! CTATCGGTGCTACAGAGAAA+AGG - chr8_3:57962762-57962781 None:intergenic 45.0%
CTGAACCAAACGCACAGTAA+TGG + chr8_3:57963154-57963173 Msa1297550:three_prime_UTR 45.0%
CGATCGTCAAAACTCCTCCA+AGG - chr8_3:57957000-57957019 None:intergenic 50.0%
!!! GACTTGCGGAGGGTTTTAGA+AGG - chr8_3:57957217-57957236 None:intergenic 50.0%
TAAAACCCTCCGCAAGTCGA+CGG + chr8_3:57957219-57957238 Msa1297550:CDS 50.0%
GAGCATCACCACTAGGATAC+CGG - chr8_3:57957300-57957319 None:intergenic 50.0%
! TGAGTTGGAGCATCACCACT+AGG - chr8_3:57957307-57957326 None:intergenic 50.0%
GTCCGTGTCATGATCGTGTT+AGG - chr8_3:57957655-57957674 None:intergenic 50.0%
ACGATCATGACACGGACACA+TGG + chr8_3:57957658-57957677 Msa1297550:intron 50.0%
! GCACCGACACTTCCATCTAT+TGG - chr8_3:57957758-57957777 None:intergenic 50.0%
GCTAATGAACCCACTTGGGT+TGG + chr8_3:57957854-57957873 Msa1297550:intron 50.0%
!! TTGGGTTGGCCTAGTGGTAT+TGG + chr8_3:57957868-57957887 Msa1297550:intron 50.0%
!! TTGGCCTAGTGGTATTGGCT+TGG + chr8_3:57957873-57957892 Msa1297550:intron 50.0%
!! TGGCCTAGTGGTATTGGCTT+GGG + chr8_3:57957874-57957893 Msa1297550:intron 50.0%
GTCTCAGGTTCGATTCTCAC+CGG + chr8_3:57957922-57957941 Msa1297550:intron 50.0%
! CTCACCGGTGTCAATTTAGG+TGG + chr8_3:57957937-57957956 Msa1297550:intron 50.0%
TGGCCCACCTAAATTGACAC+CGG - chr8_3:57957944-57957963 None:intergenic 50.0%
TGTCGACGTTCCCAATAGGA+GGG - chr8_3:57958616-57958635 None:intergenic 50.0%
TTGTCGACGTTCCCAATAGG+AGG - chr8_3:57958617-57958636 None:intergenic 50.0%
ATCTGCCGAATTGAGAGAGC+AGG + chr8_3:57958853-57958872 Msa1297550:CDS 50.0%
AGCAATGCATGATGCTCTGG+AGG + chr8_3:57958935-57958954 Msa1297550:intron 50.0%
TAGAGTAGAGGAGGACGAAG+TGG + chr8_3:57959107-57959126 Msa1297550:intron 50.0%
TAGGACAGAGGCAGAGGATT+GGG - chr8_3:57960795-57960814 None:intergenic 50.0%
TTAGGACAGAGGCAGAGGAT+TGG - chr8_3:57960796-57960815 None:intergenic 50.0%
GTACAACAACAGCAGGTGGA+AGG - chr8_3:57961296-57961315 None:intergenic 50.0%
AAGCGTACAACAACAGCAGG+TGG - chr8_3:57961300-57961319 None:intergenic 50.0%
ATCCACAACCCTCAAGCATG+AGG - chr8_3:57961847-57961866 None:intergenic 50.0%
TCGGCTCATATCCTCGTACT+CGG + chr8_3:57961933-57961952 Msa1297550:intron 50.0%
TTTGCAAGAGGACCAGTGGT+AGG + chr8_3:57962563-57962582 Msa1297550:intron 50.0%
AGCGACGGAGCTTCAAACAC+CGG + chr8_3:57957249-57957268 Msa1297550:CDS 55.0%
TTACCCTTCCATTCGCCTGC+AGG + chr8_3:57957529-57957548 Msa1297550:CDS 55.0%
ATGCCTGCAGGCGAATGGAA+GGG - chr8_3:57957535-57957554 None:intergenic 55.0%
ACCACTAGGCCAACCCAAGT+GGG - chr8_3:57957866-57957885 None:intergenic 55.0%
TACCACTAGGCCAACCCAAG+TGG - chr8_3:57957867-57957886 None:intergenic 55.0%
GGTCCCAAGCCAATACCACT+AGG - chr8_3:57957880-57957899 None:intergenic 55.0%
!! AGTGGTATTGGCTTGGGACC+TGG + chr8_3:57957880-57957899 Msa1297550:intron 55.0%
!! GTGGTATTGGCTTGGGACCT+GGG + chr8_3:57957881-57957900 Msa1297550:intron 55.0%
GAATCGAACCTGAGACCTCG+AGG - chr8_3:57957918-57957937 None:intergenic 55.0%
GCAGATATCCCAAGTGCCTC+TGG - chr8_3:57958839-57958858 None:intergenic 55.0%
AGTAGAGGAGGACGAAGTGG+TGG + chr8_3:57959110-57959129 Msa1297550:intron 55.0%
GGACGAAGTGGTGGTTGTAG+TGG + chr8_3:57959119-57959138 Msa1297550:intron 55.0%
! TGTGTCCATCCGGCTTGACT+TGG - chr8_3:57960137-57960156 None:intergenic 55.0%
! GGAGTTTAGGACAGAGGCAG+AGG - chr8_3:57960801-57960820 None:intergenic 55.0%
ACGTGCAAGCCTCATGCTTG+AGG + chr8_3:57961835-57961854 Msa1297550:intron 55.0%
CGTGCAAGCCTCATGCTTGA+GGG + chr8_3:57961836-57961855 Msa1297550:intron 55.0%
AGCCTCATGCTTGAGGGTTG+TGG + chr8_3:57961842-57961861 Msa1297550:intron 55.0%
AGGAGAATGAGCCGAGTACG+AGG - chr8_3:57961947-57961966 None:intergenic 55.0%
TTACGCCTTGGAGTTGGCCA+TGG + chr8_3:57962689-57962708 Msa1297550:CDS 55.0%
TACGCCTTGGAGTTGGCCAT+GGG + chr8_3:57962690-57962709 Msa1297550:CDS 55.0%
CATGCCTGCAGGCGAATGGA+AGG - chr8_3:57957536-57957555 None:intergenic 60.0%
CTTCCATTCGCCTGCAGGCA+TGG + chr8_3:57957534-57957553 Msa1297550:CDS 60.0%
GTACCATGCCTGCAGGCGAA+TGG - chr8_3:57957540-57957559 None:intergenic 60.0%
TGACACGGACACATGGACGC+AGG + chr8_3:57957665-57957684 Msa1297550:intron 60.0%
!! ACCCACTTGGGTTGGCCTAG+TGG + chr8_3:57957862-57957881 Msa1297550:intron 60.0%
TCGAACCTGAGACCTCGAGG+AGG - chr8_3:57957915-57957934 None:intergenic 60.0%
ACTGCTGTTCCAGGCCCTCT+TGG + chr8_3:57960876-57960895 Msa1297550:intron 60.0%
GTCACCCATGGCCAACTCCA+AGG - chr8_3:57962697-57962716 None:intergenic 60.0%
GCCATGGGTGACGAGTAAGC+AGG + chr8_3:57962705-57962724 Msa1297550:exon 60.0%
GCCTGCTTACTCGTCACCCA+TGG - chr8_3:57962709-57962728 None:intergenic 60.0%
AACCCTCCGCAAGTCGACGG+TGG + chr8_3:57957222-57957241 Msa1297550:CDS 65.0%
!! TGCCACCGTCGACTTGCGGA+GGG - chr8_3:57957227-57957246 None:intergenic 65.0%
!! CTGCTGCCACCGTCGACTTG+CGG - chr8_3:57957231-57957250 None:intergenic 65.0%
! TCGAGGAGGAGCACACTCCC+AGG - chr8_3:57957901-57957920 None:intergenic 65.0%
! TGGGAGTGTGCTCCTCCTCG+AGG + chr8_3:57957900-57957919 Msa1297550:intron 65.0%
GTGCTCCTCCTCGAGGTCTC+AGG + chr8_3:57957907-57957926 Msa1297550:intron 65.0%
!! CTGCCACCGTCGACTTGCGG+AGG - chr8_3:57957228-57957247 None:intergenic 70.0%
GTCGACGGTGGCAGCAGCGA+CGG + chr8_3:57957234-57957253 Msa1297550:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 57956907 57963189 57956907 ID=Msa1297550;Name=Msa1297550
chr8_3 mRNA 57956907 57963189 57956907 ID=Msa1297550-mRNA-1;Parent=Msa1297550;Name=Msa1297550-mRNA-1;_AED=0.03;_eAED=0.03;_QI=229|1|1|1|1|1|6|467|186
chr8_3 exon 57956907 57957384 57956907 ID=Msa1297550-mRNA-1:exon:16584;Parent=Msa1297550-mRNA-1
chr8_3 exon 57957492 57957555 57957492 ID=Msa1297550-mRNA-1:exon:16585;Parent=Msa1297550-mRNA-1
chr8_3 exon 57958786 57958874 57958786 ID=Msa1297550-mRNA-1:exon:16586;Parent=Msa1297550-mRNA-1
chr8_3 exon 57959725 57959793 57959725 ID=Msa1297550-mRNA-1:exon:16587;Parent=Msa1297550-mRNA-1
chr8_3 exon 57962536 57962580 57962536 ID=Msa1297550-mRNA-1:exon:16588;Parent=Msa1297550-mRNA-1
chr8_3 exon 57962678 57963189 57962678 ID=Msa1297550-mRNA-1:exon:16589;Parent=Msa1297550-mRNA-1
chr8_3 five_prime_UTR 57956907 57957135 57956907 ID=Msa1297550-mRNA-1:five_prime_utr;Parent=Msa1297550-mRNA-1
chr8_3 CDS 57957136 57957384 57957136 ID=Msa1297550-mRNA-1:cds;Parent=Msa1297550-mRNA-1
chr8_3 CDS 57957492 57957555 57957492 ID=Msa1297550-mRNA-1:cds;Parent=Msa1297550-mRNA-1
chr8_3 CDS 57958786 57958874 57958786 ID=Msa1297550-mRNA-1:cds;Parent=Msa1297550-mRNA-1
chr8_3 CDS 57959725 57959793 57959725 ID=Msa1297550-mRNA-1:cds;Parent=Msa1297550-mRNA-1
chr8_3 CDS 57962536 57962580 57962536 ID=Msa1297550-mRNA-1:cds;Parent=Msa1297550-mRNA-1
chr8_3 CDS 57962678 57962722 57962678 ID=Msa1297550-mRNA-1:cds;Parent=Msa1297550-mRNA-1
chr8_3 three_prime_UTR 57962723 57963189 57962723 ID=Msa1297550-mRNA-1:three_prime_utr;Parent=Msa1297550-mRNA-1
Gene Sequence

>Msa1297550

ATGGCGCTACCCCTTCTTCGAATTCCCAGTAGTAGTTGTTGTTCGATTCCATTTATTAATACAAAGCCACGATATCTTCCTTCTAAAACCCTCCGCAAGTCGACGGTGGCAGCAGCGACGGAGCTTCAAACACCGGTGAGACTAACGGAAGCAAACGATTACCGGTATCCTAGTGGTGATGCTCCAACTCATAAGGTCACAGTTCACGATAGACAACGAGGAGTTGTTCACGAATTCCTTGTACCTGAGGACCAATATATATTGCATACTGCTGAGTCTCAGAATATTACCCTTCCATTCGCCTGCAGGCATGGTTGTTGTACTAGTTGCGCTGTTCGTATAAAGAATGGGAAAATTAAACAGCCAGAGGCACTTGGGATATCTGCCGAATTGAGAGAGCAGGGTTATGCACTTCTTTGTGTGAGTTTCCCATACTCTGATCTTGAAGTAGAAACTCAAGATGAAGATGAGGTATATTGGCTTCAATTTGGACGTTATTTTGCAAGAGGACCAGTGGAAAGAGATGATTACGCCTTGGAGTTGGCCATGGGTGACGAGTAA

Protein sequence

>Msa1297550

MALPLLRIPSSSCCSIPFINTKPRYLPSKTLRKSTVAAATELQTPVRLTEANDYRYPSGDAPTHKVTVHDRQRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKNGKIKQPEALGISAELREQGYALLCVSFPYSDLEVETQDEDEVYWLQFGRYFARGPVERDDYALELAMGDE*