AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1398150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1398150 MtrunA17_Chr7g0259311 96.330 218 8 0 1 218 1 218 6.07e-158 435
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1398150 AT2G48070.1 80.986 142 27 0 77 218 56 197 3.33e-84 248
Msa1398150 AT2G48070.2 80.986 142 27 0 77 218 56 197 3.33e-84 248
Msa1398150 AT2G48070.3 78.767 146 27 1 77 218 56 201 6.63e-82 243

Find 98 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCGTTAATTAAGAATTTA+AGG 0.115602 tig0022246:+14022 Msa1398150:five_prime_UTR
ATGATCTGTATCACTGATTT+TGG 0.119161 tig0022246:+16337 Msa1398150:three_prime_UTR
CTTCAGACCAACCTGATCTT+TGG 0.218609 tig0022246:+15012 Msa1398150:CDS
ACTAAATTACATTTCATCTT+TGG 0.225995 tig0022246:-16297 None:intergenic
CACCTTAAATTCTTAATTAA+CGG 0.265433 tig0022246:-14024 None:intergenic
GCAGATATAATAGCTTTCTT+TGG 0.277583 tig0022246:+15774 Msa1398150:CDS
CTTCAAACCATTACCTTTGT+AGG 0.281560 tig0022246:+14194 Msa1398150:CDS
CTAAATTACATTTCATCTTT+GGG 0.304114 tig0022246:-16296 None:intergenic
TTGCCTTAGTTAACATTTGA+TGG 0.308946 tig0022246:-16598 None:intergenic
AATAGACAAAGAACTTAAAA+AGG 0.327859 tig0022246:+14402 Msa1398150:CDS
AGAGGAAGTGCTTTCTTCAT+TGG 0.351463 tig0022246:-14365 None:intergenic
TAAGGTGGTTCCTCATTGTT+TGG 0.363170 tig0022246:+14040 Msa1398150:five_prime_UTR
AAAGGTAATGGTTTGAAGAA+TGG 0.382770 tig0022246:-14189 None:intergenic
GGTGTGGATTTGAACACATT+TGG 0.384933 tig0022246:-14003 None:intergenic
ACCTGATCTTTGGAGATTGA+TGG 0.394975 tig0022246:+15022 Msa1398150:CDS
TGATGGGAATGTGGTCCATT+TGG 0.397897 tig0022246:+15039 Msa1398150:CDS
GATGGTCCTTCAATAATTCA+TGG 0.407473 tig0022246:-16580 None:intergenic
CTTAAGGTTGAAAGGTACTT+TGG 0.417588 tig0022246:-14265 None:intergenic
AGTGCTTTCTTCATTGGTGT+TGG 0.419272 tig0022246:-14359 None:intergenic
GAACTTACTGAACATCCAAA+TGG 0.422454 tig0022246:-15054 None:intergenic
TGAAGTCCTTTGCTGTTGTT+TGG 0.424798 tig0022246:+15748 Msa1398150:CDS
TGAAAGGTACTTTGGAAGGT+TGG 0.424998 tig0022246:-14257 None:intergenic
ACAGTATACAAGGTACTTCC+AGG 0.432743 tig0022246:-14924 None:intergenic
TGTGTCTACTAGGGAGTTAG+AGG 0.436256 tig0022246:+16174 Msa1398150:three_prime_UTR
AACACAAGGATGAAAGAATT+CGG 0.439484 tig0022246:+16130 Msa1398150:three_prime_UTR
GGGATAAGGTGAGCGTCTTA+AGG 0.439792 tig0022246:-14281 None:intergenic
AGCGTATGCATCAATGTTGT+TGG 0.443654 tig0022246:+14959 Msa1398150:CDS
AGCTGCAACCTTTGCACCGA+GGG 0.452896 tig0022246:+14872 Msa1398150:CDS
ATTTGAAGTGGCACATGCAA+TGG 0.456020 tig0022246:-14302 None:intergenic
CAACATTGAGCAAGGGAACT+AGG 0.460297 tig0022246:-15710 None:intergenic
TTTGATGCCGTTGAAGCCCT+CGG 0.469009 tig0022246:-14888 None:intergenic
CTTTGGAATGTATGCATGGA+AGG 0.470844 tig0022246:+15791 Msa1398150:CDS
AAAGAGTTAACCGCCAGGTT+GGG 0.471650 tig0022246:-15999 None:intergenic
CCTGGCGGTTAACTCTTTGA+AGG 0.473984 tig0022246:+16004 Msa1398150:three_prime_UTR
GTTTGAATTGGAGAGACTAA+AGG 0.476477 tig0022246:-14226 None:intergenic
GCTTGGATGGCTCCAGAAAA+CGG 0.476983 tig0022246:+15967 Msa1398150:intron
CCCATCAATCTCCAAAGATC+AGG 0.478700 tig0022246:-15023 None:intergenic
TTTGAATTGGAGAGACTAAA+GGG 0.483141 tig0022246:-14225 None:intergenic
TACAACTTCTTCATTTGAAG+TGG 0.486651 tig0022246:-14314 None:intergenic
TTTGAAGTGGCACATGCAAT+GGG 0.489031 tig0022246:-14301 None:intergenic
GAATTCGGCGTGGAAATTCC+AGG 0.493667 tig0022246:+16145 Msa1398150:three_prime_UTR
TTCAAACCATTACCTTTGTA+GGG 0.495407 tig0022246:+14195 Msa1398150:CDS
AAGGTACTTCCAGGTACTGC+AGG 0.496122 tig0022246:-14915 None:intergenic
CCTGATCTTTGGAGATTGAT+GGG 0.498697 tig0022246:+15023 Msa1398150:CDS
CAAAGATCAGGTTGGTCTGA+AGG 0.501488 tig0022246:-15011 None:intergenic
CTTTGCACCGAGGGCTTCAA+CGG 0.504270 tig0022246:+14881 Msa1398150:CDS
TGATGGCCATGAATTATTGA+AGG 0.512425 tig0022246:+16574 Msa1398150:three_prime_UTR
TTCTGAAATTAAGTTGTCAT+CGG 0.512941 tig0022246:-14134 None:intergenic
GTTGACTCTTGAATTTCTCA+AGG 0.513512 tig0022246:+16030 Msa1398150:three_prime_UTR
CGAGGATGGTGATGAGAAGA+TGG 0.517965 tig0022246:-14106 None:intergenic
TGATGAGAAGATGGAAGATA+AGG 0.519078 tig0022246:-14097 None:intergenic
GTCCTTTGCTGTTGTTTGGT+CGG 0.519274 tig0022246:+15752 Msa1398150:CDS
GTGGCACATGCAATGGGATA+AGG 0.520683 tig0022246:-14295 None:intergenic
CAAAGAGTTAACCGCCAGGT+TGG 0.522405 tig0022246:-16000 None:intergenic
CAATCTCGAGCTCGCAAGGA+AGG 0.524706 tig0022246:-15648 None:intergenic
GCTCCAGAAAACGGACTAGT+TGG 0.530122 tig0022246:+15976 Msa1398150:exon
GATGAAATGTAATTTAGTCA+TGG 0.530814 tig0022246:+16302 Msa1398150:three_prime_UTR
AGGTTGAAAGGTACTTTGGA+AGG 0.535613 tig0022246:-14261 None:intergenic
AAATGAAGAAGTTGTAGAAG+AGG 0.535694 tig0022246:+14321 Msa1398150:CDS
AAAGATCAGGTTGGTCTGAA+GGG 0.540412 tig0022246:-15010 None:intergenic
TGAGCAATCTCGAGCTCGCA+AGG 0.542578 tig0022246:-15652 None:intergenic
AATTGGAGAGACTAAAGGGT+AGG 0.543404 tig0022246:-14221 None:intergenic
CGTTGAAGCCCTCGGTGCAA+AGG 0.550250 tig0022246:-14880 None:intergenic
GCGTATGCATCAATGTTGTT+GGG 0.556094 tig0022246:+14960 Msa1398150:CDS
CTAGTAGACACAAAAGCACC+TGG 0.556106 tig0022246:-16163 None:intergenic
AGGGTACCCTACAAAGGTAA+TGG 0.556258 tig0022246:-14201 None:intergenic
TAAATTCTTAATTAACGGTG+TGG 0.563403 tig0022246:-14019 None:intergenic
ACTAGGGAGTTAGAGGTCAA+AGG 0.567066 tig0022246:+16181 Msa1398150:three_prime_UTR
CTTTCTTTGGAATGTATGCA+TGG 0.570202 tig0022246:+15787 Msa1398150:CDS
ACGGACTAGTTGGCCCAACC+TGG 0.571324 tig0022246:+15986 Msa1398150:exon
GATGGAAGATAAGGAATGTG+AGG 0.576599 tig0022246:-14088 None:intergenic
AATTACATTTCATCTTTGGG+AGG 0.577037 tig0022246:-16293 None:intergenic
GTGTTGATGATTGTGATCTA+CGG 0.584292 tig0022246:-16112 None:intergenic
GGAAGATAAGGAATGTGAGG+TGG 0.589140 tig0022246:-14085 None:intergenic
CCTTCAAAGAGTTAACCGCC+AGG 0.591371 tig0022246:-16004 None:intergenic
TGGGATTACAACATTGAGCA+AGG 0.596838 tig0022246:-15718 None:intergenic
GTGAGCGTCTTAAGGTTGAA+AGG 0.597321 tig0022246:-14273 None:intergenic
AGTGTCAAACAATTAAGCAA+TGG 0.602769 tig0022246:-16497 None:intergenic
AGGTACTTCCAGGTACTGCA+GGG 0.609643 tig0022246:-14914 None:intergenic
ATTGGAGAGACTAAAGGGTA+GGG 0.611399 tig0022246:-14220 None:intergenic
TGTCATCGGAAACTCGAGGA+TGG 0.615104 tig0022246:-14120 None:intergenic
AGAATGAGAGACATTAGTGA+TGG 0.615201 tig0022246:+16557 Msa1398150:three_prime_UTR
TGCCGACCAAACAACAGCAA+AGG 0.622540 tig0022246:-15754 None:intergenic
TTTGGAGATTGATGGGAATG+TGG 0.629488 tig0022246:+15030 Msa1398150:CDS
AAGGGTAGGGTACCCTACAA+AGG 0.641142 tig0022246:-14207 None:intergenic
TTTAAATGAAAATTAAACAG+TGG 0.642441 tig0022246:-16467 None:intergenic
AATGATGTGTCCAAACAATG+AGG 0.646677 tig0022246:-14050 None:intergenic
TCAATCTCCAAAGATCAGGT+TGG 0.648619 tig0022246:-15019 None:intergenic
TATGCATCAATGTTGTTGGG+TGG 0.664299 tig0022246:+14963 Msa1398150:CDS
CGTTAATTAAGAATTTAAGG+TGG 0.671556 tig0022246:+14025 Msa1398150:five_prime_UTR
GACTAGTTGGCCCAACCTGG+CGG 0.672800 tig0022246:+15989 Msa1398150:exon
GGGATTACAACATTGAGCAA+GGG 0.677230 tig0022246:-15717 None:intergenic
CAGCTGCAACCTTTGCACCG+AGG 0.683525 tig0022246:+14871 Msa1398150:CDS
AGATCACAATCATCAACACA+AGG 0.704089 tig0022246:+16116 Msa1398150:three_prime_UTR
AAGGATGAAAGAATTCGGCG+TGG 0.714240 tig0022246:+16135 Msa1398150:three_prime_UTR
CATTGAGCAAGGGAACTAGG+AGG 0.737552 tig0022246:-15707 None:intergenic
ATTGTTTGGACACATCATTG+CGG 0.742330 tig0022246:+14054 Msa1398150:five_prime_UTR
AAGTTGTCATCGGAAACTCG+AGG 0.750720 tig0022246:-14124 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATTTCAAATCATATTTTA+AGG + tig0022246:14464-14483 Msa1398150:intron 15.0%
!!! CTTTTCTAAAAATTGATTAA+GGG + tig0022246:14511-14530 Msa1398150:intron 15.0%
!! TTCAAAATCAAGATAAAAAA+TGG - tig0022246:15088-15107 None:intergenic 15.0%
!! TAAATATGAGAAAGAATATT+AGG + tig0022246:15211-15230 Msa1398150:intron 15.0%
!! TTTAAATGAAAATTAAACAG+TGG - tig0022246:16470-16489 None:intergenic 15.0%
!! CACCTTAAATTCTTAATTAA+CGG - tig0022246:14027-14046 None:intergenic 20.0%
!!! TTTTTAAGTTCTTTGTCTAT+TGG - tig0022246:14403-14422 None:intergenic 20.0%
!! AATAGACAAAGAACTTAAAA+AGG + tig0022246:14402-14421 Msa1398150:CDS 20.0%
!! ATTGAAAGATTATACAAAGA+TGG - tig0022246:14442-14461 None:intergenic 20.0%
!!! AGCATAGATTTTTACAAAAT+GGG - tig0022246:14493-14512 None:intergenic 20.0%
!!! AAGCATAGATTTTTACAAAA+TGG - tig0022246:14494-14513 None:intergenic 20.0%
!!! GCTTTTCTAAAAATTGATTA+AGG + tig0022246:14510-14529 Msa1398150:intron 20.0%
!! ACACAATCATATATATGATA+AGG + tig0022246:14674-14693 Msa1398150:intron 20.0%
!! CACAATCATATATATGATAA+GGG + tig0022246:14675-14694 Msa1398150:intron 20.0%
!! ATTAGAAAGATAGAGAAAAA+TGG + tig0022246:14796-14815 Msa1398150:intron 20.0%
!!! ATGTTTGTTTTTGAATTGAT+AGG + tig0022246:14836-14855 Msa1398150:intron 20.0%
!! AAATCAAGATAAAAAATGGT+AGG - tig0022246:15084-15103 None:intergenic 20.0%
!! TTCTTTCTCATATTTACAAA+AGG - tig0022246:15207-15226 None:intergenic 20.0%
!! CTAAATTACATTTCATCTTT+GGG - tig0022246:16299-16318 None:intergenic 20.0%
!! ACTAAATTACATTTCATCTT+TGG - tig0022246:16300-16319 None:intergenic 20.0%
! TAAATTCTTAATTAACGGTG+TGG - tig0022246:14022-14041 None:intergenic 25.0%
! CACCGTTAATTAAGAATTTA+AGG + tig0022246:14022-14041 Msa1398150:five_prime_UTR 25.0%
! CGTTAATTAAGAATTTAAGG+TGG + tig0022246:14025-14044 Msa1398150:five_prime_UTR 25.0%
!!! TTCTGAAATTAAGTTGTCAT+CGG - tig0022246:14137-14156 None:intergenic 25.0%
!!! TGTTCATCTTTTTTCTTTTG+GGG - tig0022246:14162-14181 None:intergenic 25.0%
!!! GTGTTCATCTTTTTTCTTTT+GGG - tig0022246:14163-14182 None:intergenic 25.0%
!!! AGTGTTCATCTTTTTTCTTT+TGG - tig0022246:14164-14183 None:intergenic 25.0%
! TTGAAAACAGCTTATTATCA+TGG - tig0022246:14621-14640 None:intergenic 25.0%
!!! TTTGTTTTTGAATTGATAGG+TGG + tig0022246:14839-14858 Msa1398150:intron 25.0%
! AACTTCAAAAACAGTATACA+AGG - tig0022246:14937-14956 None:intergenic 25.0%
! AATTACAAGCTAAATTCGAT+GGG - tig0022246:15263-15282 None:intergenic 25.0%
!!! TATGTTAATTTGTCACCATT+GGG - tig0022246:15354-15373 None:intergenic 25.0%
!!! ATATGTTAATTTGTCACCAT+TGG - tig0022246:15355-15374 None:intergenic 25.0%
! AATTGCTATGATTCTTTACT+TGG + tig0022246:15574-15593 Msa1398150:intron 25.0%
! CTTTACTTGGAGTAAAAAAT+TGG + tig0022246:15587-15606 Msa1398150:intron 25.0%
!! TTTAGTTTATTGCTCATTAG+AGG - tig0022246:15842-15861 None:intergenic 25.0%
!! ATCGTCAAATATTGATAACA+TGG - tig0022246:15930-15949 None:intergenic 25.0%
! GATGAAATGTAATTTAGTCA+TGG + tig0022246:16302-16321 Msa1398150:three_prime_UTR 25.0%
!!! TCTCAATTTTAATTTTCGTC+TGG - tig0022246:16386-16405 None:intergenic 25.0%
!!! TTCATCTTTTTTCTTTTGGG+GGG - tig0022246:14160-14179 None:intergenic 30.0%
!!! GTTCATCTTTTTTCTTTTGG+GGG - tig0022246:14161-14180 None:intergenic 30.0%
! AAAGGTAATGGTTTGAAGAA+TGG - tig0022246:14192-14211 None:intergenic 30.0%
TTCAAACCATTACCTTTGTA+GGG + tig0022246:14195-14214 Msa1398150:CDS 30.0%
TTTGAATTGGAGAGACTAAA+GGG - tig0022246:14228-14247 None:intergenic 30.0%
!!! TTGGTTTTGTTGGTTTGAAT+TGG - tig0022246:14241-14260 None:intergenic 30.0%
TACAACTTCTTCATTTGAAG+TGG - tig0022246:14317-14336 None:intergenic 30.0%
AAATGAAGAAGTTGTAGAAG+AGG + tig0022246:14321-14340 Msa1398150:CDS 30.0%
GACAAAGAACTTAAAAAGGT+TGG + tig0022246:14406-14425 Msa1398150:intron 30.0%
!! TAATCACTTTTCAGACTATC+TGG + tig0022246:14572-14591 Msa1398150:intron 30.0%
!! AATCACTTTTCAGACTATCT+GGG + tig0022246:14573-14592 Msa1398150:intron 30.0%
ACAGCTTAATTAAGCACTTA+TGG - tig0022246:14707-14726 None:intergenic 30.0%
GTGCTTAATTAAGCTGTTTA+TGG + tig0022246:14710-14729 Msa1398150:intron 30.0%
ATTAAGCTGTTTATGGAAAC+AGG + tig0022246:14717-14736 Msa1398150:intron 30.0%
TTAAGCTGTTTATGGAAACA+GGG + tig0022246:14718-14737 Msa1398150:intron 30.0%
CAATTACAAGCTAAATTCGA+TGG - tig0022246:15264-15283 None:intergenic 30.0%
GTAATACTCAAGTCTAACAT+TGG - tig0022246:15332-15351 None:intergenic 30.0%
GGTGACAAATTAACATATCT+AGG + tig0022246:15357-15376 Msa1398150:intron 30.0%
CAAAGGACTTCAAAAAGAAT+GGG - tig0022246:15740-15759 None:intergenic 30.0%
GCAGATATAATAGCTTTCTT+TGG + tig0022246:15774-15793 Msa1398150:CDS 30.0%
AACACAAGGATGAAAGAATT+CGG + tig0022246:16130-16149 Msa1398150:three_prime_UTR 30.0%
AATTACATTTCATCTTTGGG+AGG - tig0022246:16296-16315 None:intergenic 30.0%
!!! ATGATCTGTATCACTGATTT+TGG + tig0022246:16337-16356 Msa1398150:three_prime_UTR 30.0%
AGTGTCAAACAATTAAGCAA+TGG - tig0022246:16500-16519 None:intergenic 30.0%
AATGATGTGTCCAAACAATG+AGG - tig0022246:14053-14072 None:intergenic 35.0%
ATTGTTTGGACACATCATTG+CGG + tig0022246:14054-14073 Msa1398150:five_prime_UTR 35.0%
TGATGAGAAGATGGAAGATA+AGG - tig0022246:14100-14119 None:intergenic 35.0%
CTTCAAACCATTACCTTTGT+AGG + tig0022246:14194-14213 Msa1398150:CDS 35.0%
GTTTGAATTGGAGAGACTAA+AGG - tig0022246:14229-14248 None:intergenic 35.0%
!! CTTAAGGTTGAAAGGTACTT+TGG - tig0022246:14268-14287 None:intergenic 35.0%
TATTGGAGTAGAAAAAGCAG+AGG - tig0022246:14386-14405 None:intergenic 35.0%
! ATGGCATAGACATTTTCCAT+GGG - tig0022246:14602-14621 None:intergenic 35.0%
TAAGCTGTTTATGGAAACAG+GGG + tig0022246:14719-14738 Msa1398150:intron 35.0%
! ATGTTGCTTGAGAGTAAATG+AGG + tig0022246:14771-14790 Msa1398150:intron 35.0%
! TGTTGCTTGAGAGTAAATGA+GGG + tig0022246:14772-14791 Msa1398150:intron 35.0%
GAACTTACTGAACATCCAAA+TGG - tig0022246:15057-15076 None:intergenic 35.0%
TTGCATAAATGAACAAGTGC+TGG + tig0022246:15110-15129 Msa1398150:intron 35.0%
!! TAAATGAACAAGTGCTGGAA+TGG + tig0022246:15115-15134 Msa1398150:intron 35.0%
ACATTCAGCAGAATGATAAC+TGG - tig0022246:15155-15174 None:intergenic 35.0%
CTGCTGAATGTTTGATTGAT+CGG + tig0022246:15164-15183 Msa1398150:intron 35.0%
TAGACTTGAGTATTACCCAA+TGG + tig0022246:15336-15355 Msa1398150:intron 35.0%
TAAGCTAGATAAAAGGCCTA+AGG - tig0022246:15455-15474 None:intergenic 35.0%
CCACACATAAGCTAGATAAA+AGG - tig0022246:15462-15481 None:intergenic 35.0%
!! CCTTTTATCTAGCTTATGTG+TGG + tig0022246:15459-15478 Msa1398150:intron 35.0%
AGCAATTAGATCTTGCAAGA+AGG - tig0022246:15561-15580 None:intergenic 35.0%
GCAAAGGACTTCAAAAAGAA+TGG - tig0022246:15741-15760 None:intergenic 35.0%
!! CTTTCTTTGGAATGTATGCA+TGG + tig0022246:15787-15806 Msa1398150:CDS 35.0%
! GAAGGTACATACGATTTCTT+AGG + tig0022246:15809-15828 Msa1398150:intron 35.0%
! GTTGACTCTTGAATTTCTCA+AGG + tig0022246:16030-16049 Msa1398150:three_prime_UTR 35.0%
!! GTGTTGATGATTGTGATCTA+CGG - tig0022246:16115-16134 None:intergenic 35.0%
AGATCACAATCATCAACACA+AGG + tig0022246:16116-16135 Msa1398150:three_prime_UTR 35.0%
AGAATGAGAGACATTAGTGA+TGG + tig0022246:16557-16576 Msa1398150:three_prime_UTR 35.0%
TGATGGCCATGAATTATTGA+AGG + tig0022246:16574-16593 Msa1398150:three_prime_UTR 35.0%
GATGGTCCTTCAATAATTCA+TGG - tig0022246:16583-16602 None:intergenic 35.0%
TAAGGTGGTTCCTCATTGTT+TGG + tig0022246:14040-14059 Msa1398150:five_prime_UTR 40.0%
GATGGAAGATAAGGAATGTG+AGG - tig0022246:14091-14110 None:intergenic 40.0%
ATTGGAGAGACTAAAGGGTA+GGG - tig0022246:14223-14242 None:intergenic 40.0%
AATTGGAGAGACTAAAGGGT+AGG - tig0022246:14224-14243 None:intergenic 40.0%
!!! CTTTGGAAGGTTGGTTTTGT+TGG - tig0022246:14251-14270 None:intergenic 40.0%
!! TGAAAGGTACTTTGGAAGGT+TGG - tig0022246:14260-14279 None:intergenic 40.0%
!! AGGTTGAAAGGTACTTTGGA+AGG - tig0022246:14264-14283 None:intergenic 40.0%
! TTTGAAGTGGCACATGCAAT+GGG - tig0022246:14304-14323 None:intergenic 40.0%
! ATTTGAAGTGGCACATGCAA+TGG - tig0022246:14305-14324 None:intergenic 40.0%
AGTGCTTTCTTCATTGGTGT+TGG - tig0022246:14362-14381 None:intergenic 40.0%
!! AGAGGAAGTGCTTTCTTCAT+TGG - tig0022246:14368-14387 None:intergenic 40.0%
! CATGGCATAGACATTTTCCA+TGG - tig0022246:14603-14622 None:intergenic 40.0%
AAGCTGTTTATGGAAACAGG+GGG + tig0022246:14720-14739 Msa1398150:intron 40.0%
! ACAGTATACAAGGTACTTCC+AGG - tig0022246:14927-14946 None:intergenic 40.0%
AGCGTATGCATCAATGTTGT+TGG + tig0022246:14959-14978 Msa1398150:CDS 40.0%
GCGTATGCATCAATGTTGTT+GGG + tig0022246:14960-14979 Msa1398150:CDS 40.0%
TATGCATCAATGTTGTTGGG+TGG + tig0022246:14963-14982 Msa1398150:CDS 40.0%
!! AAAGATCAGGTTGGTCTGAA+GGG - tig0022246:15013-15032 None:intergenic 40.0%
TCAATCTCCAAAGATCAGGT+TGG - tig0022246:15022-15041 None:intergenic 40.0%
! ACCTGATCTTTGGAGATTGA+TGG + tig0022246:15022-15041 Msa1398150:CDS 40.0%
! CCTGATCTTTGGAGATTGAT+GGG + tig0022246:15023-15042 Msa1398150:CDS 40.0%
TTTGGAGATTGATGGGAATG+TGG + tig0022246:15030-15049 Msa1398150:CDS 40.0%
! CGTCTTACAAGTCTGGTTTA+TGG - tig0022246:15425-15444 None:intergenic 40.0%
TAAACCAGACTTGTAAGACG+AGG + tig0022246:15425-15444 Msa1398150:intron 40.0%
GGGATTACAACATTGAGCAA+GGG - tig0022246:15720-15739 None:intergenic 40.0%
TGGGATTACAACATTGAGCA+AGG - tig0022246:15721-15740 None:intergenic 40.0%
!! TGAAGTCCTTTGCTGTTGTT+TGG + tig0022246:15748-15767 Msa1398150:CDS 40.0%
!! CTTTGGAATGTATGCATGGA+AGG + tig0022246:15791-15810 Msa1398150:CDS 40.0%
! AGGTGCTTTTGTGTCTACTA+GGG + tig0022246:16165-16184 Msa1398150:three_prime_UTR 40.0%
GGAAGATAAGGAATGTGAGG+TGG - tig0022246:14088-14107 None:intergenic 45.0%
AAGTTGTCATCGGAAACTCG+AGG - tig0022246:14127-14146 None:intergenic 45.0%
! AGGGTACCCTACAAAGGTAA+TGG - tig0022246:14204-14223 None:intergenic 45.0%
GTGAGCGTCTTAAGGTTGAA+AGG - tig0022246:14276-14295 None:intergenic 45.0%
AGCTGTTTATGGAAACAGGG+GGG + tig0022246:14721-14740 Msa1398150:intron 45.0%
TCAAAAAACCCTGCAGTACC+TGG + tig0022246:14906-14925 Msa1398150:CDS 45.0%
!! CAAAGATCAGGTTGGTCTGA+AGG - tig0022246:15014-15033 None:intergenic 45.0%
CTTCAGACCAACCTGATCTT+TGG + tig0022246:15012-15031 Msa1398150:CDS 45.0%
CCCATCAATCTCCAAAGATC+AGG - tig0022246:15026-15045 None:intergenic 45.0%
TGATGGGAATGTGGTCCATT+TGG + tig0022246:15039-15058 Msa1398150:CDS 45.0%
CAATCCTCGTCTTACAAGTC+TGG - tig0022246:15432-15451 None:intergenic 45.0%
TGTAAGACGAGGATTGCCTT+AGG + tig0022246:15436-15455 Msa1398150:intron 45.0%
GAAGGAGCTGGAACAACTAT+TGG - tig0022246:15543-15562 None:intergenic 45.0%
TAGATCTTGCAAGAAGGAGC+TGG - tig0022246:15555-15574 None:intergenic 45.0%
CAACATTGAGCAAGGGAACT+AGG - tig0022246:15713-15732 None:intergenic 45.0%
!! GTCCTTTGCTGTTGTTTGGT+CGG + tig0022246:15752-15771 Msa1398150:CDS 45.0%
! GTCTTCCTTTTCTTGCAGCT+TGG + tig0022246:15950-15969 Msa1398150:intron 45.0%
! TCCTTTTCTTGCAGCTTGGA+TGG + tig0022246:15954-15973 Msa1398150:intron 45.0%
AAAGAGTTAACCGCCAGGTT+GGG - tig0022246:16002-16021 None:intergenic 45.0%
AAGGATGAAAGAATTCGGCG+TGG + tig0022246:16135-16154 Msa1398150:three_prime_UTR 45.0%
!! CTAGTAGACACAAAAGCACC+TGG - tig0022246:16166-16185 None:intergenic 45.0%
! CAGGTGCTTTTGTGTCTACT+AGG + tig0022246:16164-16183 Msa1398150:three_prime_UTR 45.0%
TGTGTCTACTAGGGAGTTAG+AGG + tig0022246:16174-16193 Msa1398150:three_prime_UTR 45.0%
ACTAGGGAGTTAGAGGTCAA+AGG + tig0022246:16181-16200 Msa1398150:three_prime_UTR 45.0%
! CGAGGATGGTGATGAGAAGA+TGG - tig0022246:14109-14128 None:intergenic 50.0%
TGTCATCGGAAACTCGAGGA+TGG - tig0022246:14123-14142 None:intergenic 50.0%
! AAGGGTAGGGTACCCTACAA+AGG - tig0022246:14210-14229 None:intergenic 50.0%
GGGATAAGGTGAGCGTCTTA+AGG - tig0022246:14284-14303 None:intergenic 50.0%
GTGGCACATGCAATGGGATA+AGG - tig0022246:14298-14317 None:intergenic 50.0%
CAGACTATCTGGGTAACCCA+TGG + tig0022246:14583-14602 Msa1398150:intron 50.0%
ACAGGGGGGTTCACTTAGAA+AGG + tig0022246:14735-14754 Msa1398150:intron 50.0%
TTTGATGCCGTTGAAGCCCT+CGG - tig0022246:14891-14910 None:intergenic 50.0%
! AGGTACTTCCAGGTACTGCA+GGG - tig0022246:14917-14936 None:intergenic 50.0%
! AAGGTACTTCCAGGTACTGC+AGG - tig0022246:14918-14937 None:intergenic 50.0%
CATTGAGCAAGGGAACTAGG+AGG - tig0022246:15710-15729 None:intergenic 50.0%
TGCCGACCAAACAACAGCAA+AGG - tig0022246:15757-15776 None:intergenic 50.0%
GCCATCCAAGCTGCAAGAAA+AGG - tig0022246:15958-15977 None:intergenic 50.0%
GCTTGGATGGCTCCAGAAAA+CGG + tig0022246:15967-15986 Msa1398150:intron 50.0%
!! GCTCCAGAAAACGGACTAGT+TGG + tig0022246:15976-15995 Msa1398150:exon 50.0%
CAAAGAGTTAACCGCCAGGT+TGG - tig0022246:16003-16022 None:intergenic 50.0%
CCTTCAAAGAGTTAACCGCC+AGG - tig0022246:16007-16026 None:intergenic 50.0%
CCTGGCGGTTAACTCTTTGA+AGG + tig0022246:16004-16023 Msa1398150:three_prime_UTR 50.0%
GAATTCGGCGTGGAAATTCC+AGG + tig0022246:16145-16164 Msa1398150:three_prime_UTR 50.0%
AGCTGCAACCTTTGCACCGA+GGG + tig0022246:14872-14891 Msa1398150:CDS 55.0%
CTTTGCACCGAGGGCTTCAA+CGG + tig0022246:14881-14900 Msa1398150:CDS 55.0%
CAATCTCGAGCTCGCAAGGA+AGG - tig0022246:15651-15670 None:intergenic 55.0%
TGAGCAATCTCGAGCTCGCA+AGG - tig0022246:15655-15674 None:intergenic 55.0%
! GGGCCAACTAGTCCGTTTTC+TGG - tig0022246:15982-16001 None:intergenic 55.0%
CAGCTGCAACCTTTGCACCG+AGG + tig0022246:14871-14890 Msa1398150:CDS 60.0%
! CGTTGAAGCCCTCGGTGCAA+AGG - tig0022246:14883-14902 None:intergenic 60.0%
!! ACGGACTAGTTGGCCCAACC+TGG + tig0022246:15986-16005 Msa1398150:exon 60.0%
! GACTAGTTGGCCCAACCTGG+CGG + tig0022246:15989-16008 Msa1398150:exon 60.0%
Chromosome Type Strat End Strand Name
tig0022246 gene 14004 16610 14004 ID=Msa1398150;Name=Msa1398150
tig0022246 mRNA 14004 16610 14004 ID=Msa1398150-mRNA-1;Parent=Msa1398150;Name=Msa1398150-mRNA-1;_AED=0.10;_eAED=0.10;_QI=171|1|1|1|1|1|4|616|218
tig0022246 exon 14004 14423 14004 ID=Msa1398150-mRNA-1:exon:16449;Parent=Msa1398150-mRNA-1
tig0022246 exon 14858 15068 14858 ID=Msa1398150-mRNA-1:exon:16450;Parent=Msa1398150-mRNA-1
tig0022246 exon 15643 15812 15643 ID=Msa1398150-mRNA-1:exon:16451;Parent=Msa1398150-mRNA-1
tig0022246 exon 15968 16610 15968 ID=Msa1398150-mRNA-1:exon:16452;Parent=Msa1398150-mRNA-1
tig0022246 five_prime_UTR 14004 14174 14004 ID=Msa1398150-mRNA-1:five_prime_utr;Parent=Msa1398150-mRNA-1
tig0022246 CDS 14175 14423 14175 ID=Msa1398150-mRNA-1:cds;Parent=Msa1398150-mRNA-1
tig0022246 CDS 14858 15068 14858 ID=Msa1398150-mRNA-1:cds;Parent=Msa1398150-mRNA-1
tig0022246 CDS 15643 15812 15643 ID=Msa1398150-mRNA-1:cds;Parent=Msa1398150-mRNA-1
tig0022246 CDS 15968 15994 15968 ID=Msa1398150-mRNA-1:cds;Parent=Msa1398150-mRNA-1
tig0022246 three_prime_UTR 15995 16610 15995 ID=Msa1398150-mRNA-1:three_prime_utr;Parent=Msa1398150-mRNA-1
Gene Sequence

>Msa1398150

ATGAACACTTTAATCCATTCTTCAAACCATTACCTTTGTAGGGTACCCTACCCTTTAGTCTCTCCAATTCAAACCAACAAAACCAACCTTCCAAAGTACCTTTCAACCTTAAGACGCTCACCTTATCCCATTGCATGTGCCACTTCAAATGAAGAAGTTGTAGAAGAGGTTAAAGTAGTTGAATCCAACACCAATGAAGAAAGCACTTCCTCTGCTTTTTCTACTCCAATAGACAAAGAACTTAAAAAGGTGGCTCAGAAGACAGCTGCAACCTTTGCACCGAGGGCTTCAACGGCATCAAAAAACCCTGCAGTACCTGGAAGTACCTTGTATACTGTTTTTGAAGTTCAAGCGTATGCATCAATGTTGTTGGGTGGAGCTTTGTCTTTTAATCTCATTTTCCCTTCAGACCAACCTGATCTTTGGAGATTGATGGGAATGTGGTCCATTTGGATGTTCACAATTCCTTCCTTGCGAGCTCGAGATTGCTCAAAGAATGAGAAAGAAGCTCTCAACTATCTTTTCCTCCTAGTTCCCTTGCTCAATGTTGTAATCCCATTCTTTTTGAAGTCCTTTGCTGTTGTTTGGTCGGCAGATATAATAGCTTTCTTTGGAATGTATGCATGGAAGCTTGGATGGCTCCAGAAAACGGACTAG

Protein sequence

>Msa1398150

MNTLIHSSNHYLCRVPYPLVSPIQTNKTNLPKYLSTLRRSPYPIACATSNEEVVEEVKVVESNTNEESTSSAFSTPIDKELKKVAQKTAATFAPRASTASKNPAVPGSTLYTVFEVQAYASMLLGGALSFNLIFPSDQPDLWRLMGMWSIWMFTIPSLRARDCSKNEKEALNYLFLLVPLLNVVIPFFLKSFAVVWSADIIAFFGMYAWKLGWLQKTD*