AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1163130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163130 MtrunA17_Chr7g0259891 94.755 286 8 3 1 282 1 283 0.0 514
Msa1163130 MtrunA17_Chr1g0151081 36.652 221 126 2 73 282 185 402 1.76e-36 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163130 AT3G63170.1 55.396 278 120 2 1 278 1 274 2.17e-102 300
Msa1163130 AT2G26310.1 37.245 196 117 1 83 272 192 387 1.49e-33 126
Msa1163130 AT2G26310.5 37.245 196 117 1 83 272 192 387 1.49e-33 126
Msa1163130 AT2G26310.3 36.571 175 105 1 83 251 192 366 6.27e-26 105
Msa1163130 AT2G26310.2 33.163 196 100 2 83 272 192 362 7.25e-25 102
Msa1163130 AT2G26310.4 36.076 158 94 2 83 233 192 349 4.48e-21 91.7

Find 91 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGAGGATTGAGGTGGTTT+TGG 0.135229 7_4:+54199971 None:intergenic
GTTAAGAAGGAAAAGAATTT+TGG 0.153628 7_4:-54199693 Msa1163130:CDS
CAACAACTCCTTGCCTCTTT+GGG 0.168951 7_4:-54199819 Msa1163130:CDS
GGCTGCTGCAGCGGCGAATT+TGG 0.206859 7_4:+54199940 None:intergenic
AGATGTCTGTCTGAGAAATA+TGG 0.266325 7_4:-54199385 Msa1163130:CDS
TCTCAGAAACTCTGTGGAAT+TGG 0.270486 7_4:-54199716 Msa1163130:CDS
AACATTGATGTATATGCTTT+TGG 0.274436 7_4:-54199662 Msa1163130:intron
GCAACAACTCCTTGCCTCTT+TGG 0.280639 7_4:-54199820 Msa1163130:CDS
AATGAGATATGAATAAATTC+AGG 0.340733 7_4:+54197359 None:intergenic
GCTGCAGCAGCCGCCACTGC+TGG 0.344961 7_4:-54199929 Msa1163130:CDS
TCTTTAGCTTGTTTATCAAA+TGG 0.380206 7_4:+54197576 None:intergenic
CTCCTTGTTTCCCTTCAATT+CGG 0.388808 7_4:+54199348 None:intergenic
CCTCGCCAACGTATAAATCT+AGG 0.389464 7_4:+54197601 None:intergenic
CTCAGAAACTCTGTGGAATT+GGG 0.392277 7_4:-54199715 Msa1163130:CDS
AGCACAAGGGATGCATCAAC+AGG 0.396096 7_4:+54197404 None:intergenic
AAAGTAAATCTTCTTGACTT+TGG 0.407936 7_4:+54197245 None:intergenic
AAAGAGACGGTGGCGGTCAT+TGG 0.410130 7_4:+54199877 None:intergenic
CCGATTGTTGACTCGAGGAC+TGG 0.423846 7_4:-54199767 Msa1163130:CDS
ACGGAAGTTACGAAGTGTTT+CGG 0.427586 7_4:+54200037 None:intergenic
GGAGTTTAATGAGGATCTAC+TGG 0.431474 7_4:-54199329 Msa1163130:CDS
ACCTACACAGGAGTTTACTT+TGG 0.433749 7_4:+54197628 None:intergenic
TCTTTGGGGTTCTCTCAGTC+TGG 0.434966 7_4:-54199804 Msa1163130:CDS
ATGATATACATTTAACAGTA+AGG 0.442640 7_4:-54199303 Msa1163130:CDS
TGCAGTTGACGGACAGGAAG+TGG 0.444813 7_4:-54197658 Msa1163130:intron
AAGAGGCAAGGAGTTGTTGC+TGG 0.461051 7_4:+54199823 None:intergenic
GTTACGAAGTGTTTCGGAGT+TGG 0.469859 7_4:+54200043 None:intergenic
AGCAGTGGCGGCTGCTGCAG+CGG 0.471585 7_4:+54199931 None:intergenic
GAGAAAGGGCGTGAGGATTG+AGG 0.476918 7_4:+54199962 None:intergenic
GCAGCGGCGAATTTGGAGAA+AGG 0.483136 7_4:+54199947 None:intergenic
AACAACTCCTTGCCTCTTTG+GGG 0.492409 7_4:-54199818 Msa1163130:CDS
GATGTCTGTCTGAGAAATAT+GGG 0.494327 7_4:-54199384 Msa1163130:CDS
AACTTTGGAGGTAAGAAGCC+AGG 0.495322 7_4:+54197538 None:intergenic
TCTCTCAGTCTGGCTGATAG+TGG 0.497372 7_4:-54199794 Msa1163130:CDS
TGCGGCGGTGGCACCAGCAG+TGG 0.498989 7_4:+54199916 None:intergenic
TCTGTGGAATTGGGTTAAGA+AGG 0.500714 7_4:-54199706 Msa1163130:CDS
GGTTGTTGCAGTTGACGGAC+AGG 0.501877 7_4:-54197664 Msa1163130:intron
CGGAGTTGGAACATGGAGAC+TGG 0.504539 7_4:+54200057 None:intergenic
TTTGGGTTAGAAAATGTGAA+AGG 0.508855 7_4:+54199989 None:intergenic
GACGGCGATGAATGCGGCGG+TGG 0.511495 7_4:+54199904 None:intergenic
GGCGGTGGCACCAGCAGTGG+CGG 0.517725 7_4:+54199919 None:intergenic
TGAGAAGCTTCAAGAACAGA+AGG 0.519226 7_4:+54199734 None:intergenic
GAGACGGTGGCGGTCATTGG+AGG 0.519519 7_4:+54199880 None:intergenic
GGAAGTGAAGAAAGAGTTCA+AGG 0.519936 7_4:+54199844 None:intergenic
CAGCGGCGAATTTGGAGAAA+GGG 0.523567 7_4:+54199948 None:intergenic
ATGAGATATGAATAAATTCA+GGG 0.526922 7_4:+54197360 None:intergenic
GTATTATATAAAGATGCTCT+CGG 0.528758 7_4:-54200087 Msa1163130:five_prime_UTR
CCAGTCCTCGAGTCAACAAT+CGG 0.530890 7_4:+54199767 None:intergenic
TTGTTTCCCTTCAATTCGGA+CGG 0.540407 7_4:+54199352 None:intergenic
AGTGCATTTGAAGAGTCTGT+TGG 0.545083 7_4:-54199238 Msa1163130:CDS
AGTGTTTCGGAGTTGGAACA+TGG 0.547591 7_4:+54200050 None:intergenic
AAGATGTTACGTTTATGAGT+GGG 0.552958 7_4:+54197272 None:intergenic
CAAGAAGATTTACTTTGTCG+AGG 0.555340 7_4:-54197238 None:intergenic
GTCCGAATTGAAGGGAAACA+AGG 0.569239 7_4:-54199350 Msa1163130:CDS
TTGGGTTAGAAAATGTGAAA+GGG 0.569537 7_4:+54199990 None:intergenic
TCAATCCTAGATTTATACGT+TGG 0.577790 7_4:-54197606 Msa1163130:CDS
CAAGATGTTACGTTTATGAG+TGG 0.581286 7_4:+54197271 None:intergenic
ATAATAAAGAATTGCTTCAG+AGG 0.585265 7_4:-54199186 Msa1163130:intron
GGGAAACAAGGAGTTTAATG+AGG 0.593911 7_4:-54199338 Msa1163130:CDS
CTAGAGGCATGGAATTAGCA+AGG 0.595016 7_4:+54197475 None:intergenic
AATTCATCTCACAAGAGAGA+AGG 0.595124 7_4:-54198741 Msa1163130:CDS
ATTCATCTCACAAGAGAGAA+GGG 0.595545 7_4:-54198740 Msa1163130:CDS
GAACAAAGTTACTAGAGGCA+TGG 0.595989 7_4:+54197464 None:intergenic
AATCTAGGATTGACCTACAC+AGG 0.602235 7_4:+54197616 None:intergenic
GATGTTACGTTTATGAGTGG+GGG 0.603466 7_4:+54197274 None:intergenic
GCAGTTGACGGACAGGAAGT+GGG 0.604670 7_4:-54197657 Msa1163130:intron
GAGAGAACCCCAAAGAGGCA+AGG 0.606859 7_4:+54199811 None:intergenic
GTGTTCCGATTGTTGACTCG+AGG 0.607374 7_4:-54199772 Msa1163130:CDS
GGAGGAGACGGCGATGAATG+CGG 0.608626 7_4:+54199898 None:intergenic
GTGGCGGTCATTGGAGGAGA+CGG 0.609813 7_4:+54199886 None:intergenic
AGATGTTACGTTTATGAGTG+GGG 0.611777 7_4:+54197273 None:intergenic
TTTGTAGAAAGAGACGGTGG+CGG 0.615662 7_4:+54199870 None:intergenic
CCTAGATTTATACGTTGGCG+AGG 0.617834 7_4:-54197601 Msa1163130:CDS
TTCTTGTCTCTTGAAGCACA+AGG 0.619784 7_4:+54197390 None:intergenic
ATTGAATCCATGTCCTACAA+AGG 0.620352 7_4:+54197498 None:intergenic
ATGAAATCAAAATACCTCGT+GGG 0.630447 7_4:-54198769 Msa1163130:CDS
AAAGGGCGTGAGGATTGAGG+TGG 0.632521 7_4:+54199965 None:intergenic
TACTTGTTGTGCGAAGAACA+TGG 0.634201 7_4:+54198717 None:intergenic
TCTTGTCTCTTGAAGCACAA+GGG 0.643717 7_4:+54197391 None:intergenic
TTCAAGAACAGAAGGGAACG+AGG 0.644777 7_4:+54199742 None:intergenic
GAATTTGGAGAAAGGGCGTG+AGG 0.655933 7_4:+54199955 None:intergenic
AGACTGAGAGAACCCCAAAG+AGG 0.657269 7_4:+54199806 None:intergenic
GATGAAATCAAAATACCTCG+TGG 0.663911 7_4:-54198770 Msa1163130:CDS
TCCAAAGTAAACTCCTGTGT+AGG 0.666013 7_4:-54197629 Msa1163130:CDS
GAGAAGCTTCAAGAACAGAA+GGG 0.668073 7_4:+54199735 None:intergenic
AGAAGAAATAGAGCTCAACC+TGG 0.668098 7_4:-54197556 Msa1163130:CDS
GAAGCTTCTCAGAAACTCTG+TGG 0.672841 7_4:-54199722 Msa1163130:CDS
GATTGAGCATTCGTTCTGTG+AGG 0.683191 7_4:-54199261 Msa1163130:CDS
GCACAAGGGATGCATCAACA+GGG 0.683819 7_4:+54197405 None:intergenic
GGAGACGGCGATGAATGCGG+CGG 0.700801 7_4:+54199901 None:intergenic
ATATTGAACAAAGTTACTAG+AGG 0.703138 7_4:+54197459 None:intergenic
AGATGAATTACAGACCCACG+AGG 0.819642 7_4:+54198755 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAAAATAATTAGATAAAAA+AGG + chr7_4:54197730-54197749 None:intergenic 10.0%
!!! TTTTTATAATGTTTCTTATT+TGG - chr7_4:54197874-54197893 Msa1163130:intron 10.0%
!!! TTTTATAATGTTTCTTATTT+GGG - chr7_4:54197875-54197894 Msa1163130:intron 10.0%
!! TATAAATGAAATATTATTGT+GGG + chr7_4:54198927-54198946 None:intergenic 10.0%
!! ATATAAATGAAATATTATTG+TGG + chr7_4:54198928-54198947 None:intergenic 10.0%
!! ATTAGATAAAAAAGGTAAAT+TGG + chr7_4:54197722-54197741 None:intergenic 15.0%
!!! ATTTTAGTAATGTTGAAATA+TGG - chr7_4:54199162-54199181 Msa1163130:intron 15.0%
!!! TTTTAGTAATGTTGAAATAT+GGG - chr7_4:54199163-54199182 Msa1163130:intron 15.0%
!! TTCTTAAAAAAAAAAAAAGG+AGG + chr7_4:54199244-54199263 None:intergenic 15.0%
!! AGGTTCTTAAAAAAAAAAAA+AGG + chr7_4:54199247-54199266 None:intergenic 15.0%
!!! TTGCTTTTTTTTTTTTTTTG+TGG + chr7_4:54199370-54199389 None:intergenic 15.0%
!!! TTAAGAAGGAAAAGAATTTT+GGG - chr7_4:54197642-54197661 Msa1163130:CDS 20.0%
!! ATTGGTAAAATAATTAGTTG+AGG + chr7_4:54197704-54197723 None:intergenic 20.0%
!!! AAAATTATGTTGTTTGTTGA+AGG - chr7_4:54197898-54197917 Msa1163130:intron 20.0%
!! ATGATATACATTTAACAGTA+AGG - chr7_4:54198031-54198050 Msa1163130:intron 20.0%
!! TGCTCATAAAAAAAAAGAAA+AGG + chr7_4:54198333-54198352 None:intergenic 20.0%
!! TACAGTAAAAAAAAAAGTAG+CGG + chr7_4:54199101-54199120 None:intergenic 20.0%
!! AAAAAAAAAAAAAGGAGGTA+AGG + chr7_4:54199239-54199258 None:intergenic 20.0%
!!! CTTTTTTTTTTTTTTTGTGG+TGG + chr7_4:54199367-54199386 None:intergenic 20.0%
!! ATGAGATATGAATAAATTCA+GGG + chr7_4:54199977-54199996 None:intergenic 20.0%
!! AATGAGATATGAATAAATTC+AGG + chr7_4:54199978-54199997 None:intergenic 20.0%
! GTATTATATAAAGATGCTCT+CGG - chr7_4:54197247-54197266 Msa1163130:three_prime_UTR 25.0%
!!! TAGTGATACCATTTTTGTTA+CGG + chr7_4:54197319-54197338 None:intergenic 25.0%
!! GTTAAGAAGGAAAAGAATTT+TGG - chr7_4:54197641-54197660 Msa1163130:CDS 25.0%
!! AACATTGATGTATATGCTTT+TGG - chr7_4:54197672-54197691 Msa1163130:intron 25.0%
! ATAATAAAGAATTGCTTCAG+AGG - chr7_4:54198148-54198167 Msa1163130:intron 25.0%
!!! ACTTGAGTTATCTTTTTCAT+AGG - chr7_4:54198187-54198206 Msa1163130:intron 25.0%
! GAAGAAAAAGATACAAACAA+AGG + chr7_4:54198301-54198320 None:intergenic 25.0%
! AAAATGGAAATGCAAATACA+GGG + chr7_4:54198653-54198672 None:intergenic 25.0%
!! AATTCTGAAAGTTGAGAAAA+TGG + chr7_4:54198669-54198688 None:intergenic 25.0%
!!! ATATCTTCCCCATTATTTTA+AGG - chr7_4:54198944-54198963 Msa1163130:intron 25.0%
! ACCCATTTCCTTAAAATAAT+GGG + chr7_4:54198955-54198974 None:intergenic 25.0%
! AAACCTGACAATTTGATTAT+TGG - chr7_4:54199120-54199139 Msa1163130:intron 25.0%
! TATCCAATAATCAAATTGTC+AGG + chr7_4:54199126-54199145 None:intergenic 25.0%
!! CTTTGATGTTAATTTTGTCT+TGG - chr7_4:54199649-54199668 Msa1163130:intron 25.0%
!!! TCTTTAGCTTGTTTATCAAA+TGG + chr7_4:54199761-54199780 None:intergenic 25.0%
!!! TTTTTTTAGCAGTCTAACTT+TGG + chr7_4:54199814-54199833 None:intergenic 25.0%
! TGCTAAAAAAAATCCTTTGT+AGG - chr7_4:54199823-54199842 Msa1163130:CDS 25.0%
! ATATTGAACAAAGTTACTAG+AGG + chr7_4:54199878-54199897 None:intergenic 25.0%
! AAAGTAAATCTTCTTGACTT+TGG + chr7_4:54200092-54200111 None:intergenic 25.0%
! TTGGGTTAGAAAATGTGAAA+GGG + chr7_4:54197347-54197366 None:intergenic 30.0%
! TTTGGGTTAGAAAATGTGAA+AGG + chr7_4:54197348-54197367 None:intergenic 30.0%
! TATTTTACCAAGATTCTGCA+TGG - chr7_4:54197742-54197761 Msa1163130:intron 30.0%
TAGCTAACTGAATGAATTTG+CGG - chr7_4:54197782-54197801 Msa1163130:intron 30.0%
! TGAATTTTTCACAGTCAACA+TGG + chr7_4:54197852-54197871 None:intergenic 30.0%
AGCAGAAAAGATACAAACAA+AGG + chr7_4:54198357-54198376 None:intergenic 30.0%
! ACTTGGAATACAGTTTTCAA+TGG + chr7_4:54198433-54198452 None:intergenic 30.0%
ATGAAATCAAAATACCTCGT+GGG - chr7_4:54198565-54198584 Msa1163130:intron 30.0%
GAAAATGGAAATGCAAATAC+AGG + chr7_4:54198654-54198673 None:intergenic 30.0%
AATTCAAGTCCTCTAATCAT+TGG - chr7_4:54198752-54198771 Msa1163130:CDS 30.0%
!! TTCTGAAATCCAATGATTAG+AGG + chr7_4:54198764-54198783 None:intergenic 30.0%
!!! TCCCCATTATTTTAAGGAAA+TGG - chr7_4:54198950-54198969 Msa1163130:intron 30.0%
CCCATTTCCTTAAAATAATG+GGG + chr7_4:54198954-54198973 None:intergenic 30.0%
!!! CCCCATTATTTTAAGGAAAT+GGG - chr7_4:54198951-54198970 Msa1163130:intron 30.0%
CACCCATTTCCTTAAAATAA+TGG + chr7_4:54198956-54198975 None:intergenic 30.0%
!!! CATTATTTTAAGGAAATGGG+TGG - chr7_4:54198954-54198973 Msa1163130:intron 30.0%
! GGTTTAAGTGTTATTAGGTT+CGG + chr7_4:54199218-54199237 None:intergenic 30.0%
! GGTAAGGTTTAAGTGTTATT+AGG + chr7_4:54199223-54199242 None:intergenic 30.0%
!!! TTTTTTTTTTTGTGGTGGCT+GGG + chr7_4:54199362-54199381 None:intergenic 30.0%
!!! TTTTTTTTTTTTGTGGTGGC+TGG + chr7_4:54199363-54199382 None:intergenic 30.0%
TAAGTATCAAGTACCTTACA+CGG - chr7_4:54199415-54199434 Msa1163130:CDS 30.0%
AGTTAAACTTTCAACTCAGT+TGG - chr7_4:54199479-54199498 Msa1163130:intron 30.0%
!!! TTAGGTGTTTTAGTTGCTTT+TGG - chr7_4:54199587-54199606 Msa1163130:intron 30.0%
TCAATGCTAAATCACAACAA+GGG - chr7_4:54199625-54199644 Msa1163130:intron 30.0%
TCAATCCTAGATTTATACGT+TGG - chr7_4:54199728-54199747 Msa1163130:CDS 30.0%
AAAAAATCCTTTGTAGGACA+TGG - chr7_4:54199829-54199848 Msa1163130:CDS 30.0%
AAGATGTTACGTTTATGAGT+GGG + chr7_4:54200065-54200084 None:intergenic 30.0%
CGTAACTTCCGTAACAAAAA+TGG - chr7_4:54197308-54197327 Msa1163130:three_prime_UTR 35.0%
! AGGCATTTTGTAGAAAGAGA+CGG + chr7_4:54197473-54197492 None:intergenic 35.0%
AGATGTCTGTCTGAGAAATA+TGG - chr7_4:54197949-54197968 Msa1163130:intron 35.0%
GATGTCTGTCTGAGAAATAT+GGG - chr7_4:54197950-54197969 Msa1163130:intron 35.0%
TCGTGAGATGAATAAACACT+TGG + chr7_4:54198450-54198469 None:intergenic 35.0%
GATGAAATCAAAATACCTCG+TGG - chr7_4:54198564-54198583 Msa1163130:intron 35.0%
AATTCATCTCACAAGAGAGA+AGG - chr7_4:54198593-54198612 Msa1163130:intron 35.0%
ATTCATCTCACAAGAGAGAA+GGG - chr7_4:54198594-54198613 Msa1163130:intron 35.0%
! TAGTATTGAGTCTAACCGAA+AGG - chr7_4:54198837-54198856 Msa1163130:intron 35.0%
! AGTATTGAGTCTAACCGAAA+GGG - chr7_4:54198838-54198857 Msa1163130:intron 35.0%
! TTTGGAATGTGGTATATCAG+GGG + chr7_4:54198867-54198886 None:intergenic 35.0%
! GTTTGGAATGTGGTATATCA+GGG + chr7_4:54198868-54198887 None:intergenic 35.0%
! AGTTTGGAATGTGGTATATC+AGG + chr7_4:54198869-54198888 None:intergenic 35.0%
TGATATACCACATTCCAAAC+TGG - chr7_4:54198868-54198887 Msa1163130:intron 35.0%
TAAGATTCATGTAGCCAGTT+TGG + chr7_4:54198885-54198904 None:intergenic 35.0%
! TATACTCGCTCTTTTAAGCA+GGG + chr7_4:54199274-54199293 None:intergenic 35.0%
! TTATACTCGCTCTTTTAAGC+AGG + chr7_4:54199275-54199294 None:intergenic 35.0%
TGCATAATATATGCAACGTC+TGG - chr7_4:54199327-54199346 Msa1163130:CDS 35.0%
GCATAATATATGCAACGTCT+GGG - chr7_4:54199328-54199347 Msa1163130:CDS 35.0%
CATAATATATGCAACGTCTG+GGG - chr7_4:54199329-54199348 Msa1163130:CDS 35.0%
!!! TTTTTTTTTTGTGGTGGCTG+GGG + chr7_4:54199361-54199380 None:intergenic 35.0%
TGGTGATTTCAAATTCGAAC+TGG - chr7_4:54199499-54199518 Msa1163130:intron 35.0%
AACTAAAACACCTAATACCG+GGG + chr7_4:54199582-54199601 None:intergenic 35.0%
CAACTAAAACACCTAATACC+GGG + chr7_4:54199583-54199602 None:intergenic 35.0%
GCAACTAAAACACCTAATAC+CGG + chr7_4:54199584-54199603 None:intergenic 35.0%
GTCAATGCTAAATCACAACA+AGG - chr7_4:54199624-54199643 Msa1163130:intron 35.0%
! TTTTAGCAGTCTAACTTTGG+AGG + chr7_4:54199811-54199830 None:intergenic 35.0%
ATTGAATCCATGTCCTACAA+AGG + chr7_4:54199839-54199858 None:intergenic 35.0%
AGATGTTACGTTTATGAGTG+GGG + chr7_4:54200064-54200083 None:intergenic 35.0%
CAAGATGTTACGTTTATGAG+TGG + chr7_4:54200066-54200085 None:intergenic 35.0%
! ACGGAAGTTACGAAGTGTTT+CGG + chr7_4:54197300-54197319 None:intergenic 40.0%
! CATTTTGTAGAAAGAGACGG+TGG + chr7_4:54197470-54197489 None:intergenic 40.0%
GGAAGTGAAGAAAGAGTTCA+AGG + chr7_4:54197493-54197512 None:intergenic 40.0%
GAGAAGCTTCAAGAACAGAA+GGG + chr7_4:54197602-54197621 None:intergenic 40.0%
TGAGAAGCTTCAAGAACAGA+AGG + chr7_4:54197603-54197622 None:intergenic 40.0%
TCTCAGAAACTCTGTGGAAT+TGG - chr7_4:54197618-54197637 Msa1163130:CDS 40.0%
CTCAGAAACTCTGTGGAATT+GGG - chr7_4:54197619-54197638 Msa1163130:CDS 40.0%
TCTGTGGAATTGGGTTAAGA+AGG - chr7_4:54197628-54197647 Msa1163130:CDS 40.0%
! ATTTTCTCCGTCCGAATTGA+AGG - chr7_4:54197975-54197994 Msa1163130:intron 40.0%
! TTTTCTCCGTCCGAATTGAA+GGG - chr7_4:54197976-54197995 Msa1163130:intron 40.0%
TTGTTTCCCTTCAATTCGGA+CGG + chr7_4:54197985-54198004 None:intergenic 40.0%
! CTCCTTGTTTCCCTTCAATT+CGG + chr7_4:54197989-54198008 None:intergenic 40.0%
GGGAAACAAGGAGTTTAATG+AGG - chr7_4:54197996-54198015 Msa1163130:intron 40.0%
GGAGTTTAATGAGGATCTAC+TGG - chr7_4:54198005-54198024 Msa1163130:intron 40.0%
AGTGCATTTGAAGAGTCTGT+TGG - chr7_4:54198096-54198115 Msa1163130:intron 40.0%
GGAAGCCGATTGCAAAAATA+CGG - chr7_4:54198117-54198136 Msa1163130:intron 40.0%
GAAGCCGATTGCAAAAATAC+GGG - chr7_4:54198118-54198137 Msa1163130:intron 40.0%
AAGCCGATTGCAAAAATACG+GGG - chr7_4:54198119-54198138 Msa1163130:intron 40.0%
!! AACCCCCGTATTTTTGCAAT+CGG + chr7_4:54198125-54198144 None:intergenic 40.0%
GAATTGCTTCAGAGGTGAAA+TGG - chr7_4:54198156-54198175 Msa1163130:intron 40.0%
CAACACGGAATTCACTCAAT+TGG + chr7_4:54198499-54198518 None:intergenic 40.0%
! CATGCTGGTTAACTACAACA+CGG + chr7_4:54198514-54198533 None:intergenic 40.0%
TAACCAGCATGCTTTGATGT+AGG - chr7_4:54198523-54198542 Msa1163130:intron 40.0%
AAACCTACATCAAAGCATGC+TGG + chr7_4:54198529-54198548 None:intergenic 40.0%
!! TACTTGTTGTGCGAAGAACA+TGG + chr7_4:54198620-54198639 None:intergenic 40.0%
TGGAAATGCAAATACAGGGA+AGG + chr7_4:54198649-54198668 None:intergenic 40.0%
CTACCAGTGTTGCCAAATAT+CGG - chr7_4:54198982-54199001 Msa1163130:intron 40.0%
!!! AGATTTTTTGACAGCAGCCA+TGG - chr7_4:54199023-54199042 Msa1163130:intron 40.0%
AATCCTTCACAAATTGGCCA+TGG + chr7_4:54199043-54199062 None:intergenic 40.0%
ATGGCCACCATATAATACCA+TGG + chr7_4:54199072-54199091 None:intergenic 40.0%
AAAAAAGTAGCGGCAGATCA+TGG + chr7_4:54199091-54199110 None:intergenic 40.0%
! ATACTCGCTCTTTTAAGCAG+GGG + chr7_4:54199273-54199292 None:intergenic 40.0%
!! GGGGCTCTAAAAATTTGCAT+GGG + chr7_4:54199562-54199581 None:intergenic 40.0%
!!! ATGCAAATTTTTAGAGCCCC+CGG - chr7_4:54199562-54199581 Msa1163130:intron 40.0%
ACTAAAACACCTAATACCGG+GGG + chr7_4:54199581-54199600 None:intergenic 40.0%
TCCAAAGTAAACTCCTGTGT+AGG - chr7_4:54199705-54199724 Msa1163130:CDS 40.0%
ACCTACACAGGAGTTTACTT+TGG + chr7_4:54199709-54199728 None:intergenic 40.0%
! AATCTAGGATTGACCTACAC+AGG + chr7_4:54199721-54199740 None:intergenic 40.0%
AGAAGAAATAGAGCTCAACC+TGG - chr7_4:54199778-54199797 Msa1163130:CDS 40.0%
GAACAAAGTTACTAGAGGCA+TGG + chr7_4:54199873-54199892 None:intergenic 40.0%
TCTTGTCTCTTGAAGCACAA+GGG + chr7_4:54199946-54199965 None:intergenic 40.0%
TTCTTGTCTCTTGAAGCACA+AGG + chr7_4:54199947-54199966 None:intergenic 40.0%
GATGTTACGTTTATGAGTGG+GGG + chr7_4:54200063-54200082 None:intergenic 40.0%
AGTGTTTCGGAGTTGGAACA+TGG + chr7_4:54197287-54197306 None:intergenic 45.0%
! GTTACGAAGTGTTTCGGAGT+TGG + chr7_4:54197294-54197313 None:intergenic 45.0%
! GTGAGGATTGAGGTGGTTTT+GGG + chr7_4:54197365-54197384 None:intergenic 45.0%
TTTGTAGAAAGAGACGGTGG+CGG + chr7_4:54197467-54197486 None:intergenic 45.0%
CAACAACTCCTTGCCTCTTT+GGG - chr7_4:54197515-54197534 Msa1163130:three_prime_UTR 45.0%
AACAACTCCTTGCCTCTTTG+GGG - chr7_4:54197516-54197535 Msa1163130:three_prime_UTR 45.0%
TTCAAGAACAGAAGGGAACG+AGG + chr7_4:54197595-54197614 None:intergenic 45.0%
GAAGCTTCTCAGAAACTCTG+TGG - chr7_4:54197612-54197631 Msa1163130:CDS 45.0%
TTGCTTGCCATGCAGAATCT+TGG + chr7_4:54197752-54197771 None:intergenic 45.0%
GTCCGAATTGAAGGGAAACA+AGG - chr7_4:54197984-54198003 Msa1163130:intron 45.0%
GATTGAGCATTCGTTCTGTG+AGG - chr7_4:54198073-54198092 Msa1163130:intron 45.0%
AGCCGATTGCAAAAATACGG+GGG - chr7_4:54198120-54198139 Msa1163130:intron 45.0%
AGATGAATTACAGACCCACG+AGG + chr7_4:54198582-54198601 None:intergenic 45.0%
TATATCAGGGGACACCCTTT+CGG + chr7_4:54198855-54198874 None:intergenic 45.0%
! CATGTAGCCAGTTTGGAATG+TGG + chr7_4:54198878-54198897 None:intergenic 45.0%
TAGCCGATATTTGGCAACAC+TGG + chr7_4:54198988-54199007 None:intergenic 45.0%
! GTGTTGCCAAATATCGGCTA+TGG - chr7_4:54198988-54199007 Msa1163130:intron 45.0%
! TTGCCAAATATCGGCTATGG+CGG - chr7_4:54198991-54199010 Msa1163130:intron 45.0%
GGCCAATTTGTGAAGGATTG+TGG - chr7_4:54199044-54199063 Msa1163130:intron 45.0%
CGCCACAATCCTTCACAAAT+TGG + chr7_4:54199049-54199068 None:intergenic 45.0%
TGTGGCGCCATGGTATTATA+TGG - chr7_4:54199062-54199081 Msa1163130:intron 45.0%
!! GCTCTTTTAAGCAGGGGTAT+AGG + chr7_4:54199267-54199286 None:intergenic 45.0%
AATTACACAAGAGAACCGCG+CGG + chr7_4:54199449-54199468 None:intergenic 45.0%
!! GGGGGCTCTAAAAATTTGCA+TGG + chr7_4:54199563-54199582 None:intergenic 45.0%
!!! TTTTTAGAGCCCCCGGTATT+AGG - chr7_4:54199569-54199588 Msa1163130:intron 45.0%
GTCTTGGTTGTTGCAGTTGA+CGG - chr7_4:54199665-54199684 Msa1163130:CDS 45.0%
CCTCGCCAACGTATAAATCT+AGG + chr7_4:54199736-54199755 None:intergenic 45.0%
CCTAGATTTATACGTTGGCG+AGG - chr7_4:54199733-54199752 Msa1163130:CDS 45.0%
! AACTTTGGAGGTAAGAAGCC+AGG + chr7_4:54199799-54199818 None:intergenic 45.0%
! CTAGAGGCATGGAATTAGCA+AGG + chr7_4:54199862-54199881 None:intergenic 45.0%
! CGTGAGGATTGAGGTGGTTT+TGG + chr7_4:54197366-54197385 None:intergenic 50.0%
! GAATTTGGAGAAAGGGCGTG+AGG + chr7_4:54197382-54197401 None:intergenic 50.0%
CAGCGGCGAATTTGGAGAAA+GGG + chr7_4:54197389-54197408 None:intergenic 50.0%
AAGAGGCAAGGAGTTGTTGC+TGG + chr7_4:54197514-54197533 None:intergenic 50.0%
GCAACAACTCCTTGCCTCTT+TGG - chr7_4:54197514-54197533 Msa1163130:three_prime_UTR 50.0%
AGACTGAGAGAACCCCAAAG+AGG + chr7_4:54197531-54197550 None:intergenic 50.0%
!! TCTTTGGGGTTCTCTCAGTC+TGG - chr7_4:54197530-54197549 Msa1163130:exon 50.0%
TCTCTCAGTCTGGCTGATAG+TGG - chr7_4:54197540-54197559 Msa1163130:CDS 50.0%
!! GTGTTCCGATTGTTGACTCG+AGG - chr7_4:54197562-54197581 Msa1163130:CDS 50.0%
CCAGTCCTCGAGTCAACAAT+CGG + chr7_4:54197570-54197589 None:intergenic 50.0%
CAGCCATGGCCAATTTGTGA+AGG - chr7_4:54199037-54199056 Msa1163130:intron 50.0%
GGCGCCATGGTATTATATGG+TGG - chr7_4:54199065-54199084 Msa1163130:intron 50.0%
GCACAAGGGATGCATCAACA+GGG + chr7_4:54199932-54199951 None:intergenic 50.0%
AGCACAAGGGATGCATCAAC+AGG + chr7_4:54199933-54199952 None:intergenic 50.0%
CGGAGTTGGAACATGGAGAC+TGG + chr7_4:54197280-54197299 None:intergenic 55.0%
! AAAGGGCGTGAGGATTGAGG+TGG + chr7_4:54197372-54197391 None:intergenic 55.0%
! GAGAAAGGGCGTGAGGATTG+AGG + chr7_4:54197375-54197394 None:intergenic 55.0%
GCAGCGGCGAATTTGGAGAA+AGG + chr7_4:54197390-54197409 None:intergenic 55.0%
! AAAGAGACGGTGGCGGTCAT+TGG + chr7_4:54197460-54197479 None:intergenic 55.0%
GAGAGAACCCCAAAGAGGCA+AGG + chr7_4:54197526-54197545 None:intergenic 55.0%
!! CCGATTGTTGACTCGAGGAC+TGG - chr7_4:54197567-54197586 Msa1163130:CDS 55.0%
GCACCGCCATAGCCGATATT+TGG + chr7_4:54198997-54199016 None:intergenic 55.0%
! TATCGGCTATGGCGGTGCAA+CGG - chr7_4:54198999-54199018 Msa1163130:intron 55.0%
TGTGAAGGATTGTGGCGCCA+TGG - chr7_4:54199052-54199071 Msa1163130:intron 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr7_4:54199300-54199319 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr7_4:54199297-54199316 Msa1163130:CDS 55.0%
CGTGAGCTTAGCTCAGTTGG+TGG - chr7_4:54199300-54199319 Msa1163130:CDS 55.0%
! CGCGGAGGTATAACCGTGTA+AGG + chr7_4:54199431-54199450 None:intergenic 55.0%
TACACGGTTATACCTCCGCG+CGG - chr7_4:54199431-54199450 Msa1163130:intron 55.0%
! GGTTGTTGCAGTTGACGGAC+AGG - chr7_4:54199670-54199689 Msa1163130:CDS 55.0%
! TGCAGTTGACGGACAGGAAG+TGG - chr7_4:54199676-54199695 Msa1163130:CDS 55.0%
! GCAGTTGACGGACAGGAAGT+GGG - chr7_4:54199677-54199696 Msa1163130:CDS 55.0%
GGAGGAGACGGCGATGAATG+CGG + chr7_4:54197439-54197458 None:intergenic 60.0%
GTGGCGGTCATTGGAGGAGA+CGG + chr7_4:54197451-54197470 None:intergenic 60.0%
TACACAAGAGAACCGCGCGG+AGG + chr7_4:54199446-54199465 None:intergenic 60.0%
GGCTGCTGCAGCGGCGAATT+TGG + chr7_4:54197397-54197416 None:intergenic 65.0%
GGAGACGGCGATGAATGCGG+CGG + chr7_4:54197436-54197455 None:intergenic 65.0%
! GAGACGGTGGCGGTCATTGG+AGG + chr7_4:54197457-54197476 None:intergenic 65.0%
AGCAGTGGCGGCTGCTGCAG+CGG + chr7_4:54197406-54197425 None:intergenic 70.0%
GACGGCGATGAATGCGGCGG+TGG + chr7_4:54197433-54197452 None:intergenic 70.0%
GCTGCAGCAGCCGCCACTGC+TGG - chr7_4:54197405-54197424 Msa1163130:three_prime_UTR 75.0%
GGCGGTGGCACCAGCAGTGG+CGG + chr7_4:54197418-54197437 None:intergenic 75.0%
TGCGGCGGTGGCACCAGCAG+TGG + chr7_4:54197421-54197440 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 54197239 54200117 54197239 ID=Msa1163130;Name=Msa1163130
chr7_4 mRNA 54197239 54200117 54197239 ID=Msa1163130-mRNA-1;Parent=Msa1163130;Name=Msa1163130-mRNA-1;_AED=0.02;_eAED=0.02;_QI=88|1|1|1|1|1|4|297|282
chr7_4 exon 54197239 54197675 54197239 ID=Msa1163130-mRNA-1:exon:15779;Parent=Msa1163130-mRNA-1
chr7_4 exon 54198720 54198811 54198720 ID=Msa1163130-mRNA-1:exon:15778;Parent=Msa1163130-mRNA-1
chr7_4 exon 54199187 54199436 54199187 ID=Msa1163130-mRNA-1:exon:15777;Parent=Msa1163130-mRNA-1
chr7_4 exon 54199663 54200117 54199663 ID=Msa1163130-mRNA-1:exon:15776;Parent=Msa1163130-mRNA-1
chr7_4 five_prime_UTR 54200030 54200117 54200030 ID=Msa1163130-mRNA-1:five_prime_utr;Parent=Msa1163130-mRNA-1
chr7_4 CDS 54199663 54200029 54199663 ID=Msa1163130-mRNA-1:cds;Parent=Msa1163130-mRNA-1
chr7_4 CDS 54199187 54199436 54199187 ID=Msa1163130-mRNA-1:cds;Parent=Msa1163130-mRNA-1
chr7_4 CDS 54198720 54198811 54198720 ID=Msa1163130-mRNA-1:cds;Parent=Msa1163130-mRNA-1
chr7_4 CDS 54197536 54197675 54197536 ID=Msa1163130-mRNA-1:cds;Parent=Msa1163130-mRNA-1
chr7_4 three_prime_UTR 54197239 54197535 54197239 ID=Msa1163130-mRNA-1:three_prime_utr;Parent=Msa1163130-mRNA-1
Gene Sequence

>Msa1163130

ATGGTATCACTACGCTTCCCTTTCACATTTTCTAACCCAAAACCACCTCAATCCTCACGCCCTTTCTCCAAATTCGCCGCTGCAGCAGCCGCCACTGCTGGTGCCACCGCCGCATTCATCGCCGTCTCCTCCAATGACCGCCACCGTCTCTTTCTACAAAATGCCTTGAACTCTTTCTTCACTTCCAGCAACAACTCCTTGCCTCTTTGGGGTTCTCTCAGTCTGGCTGATAGTGGTGTTCCGATTGTTGACTCGAGGACTGGATCCTCGTTCCCTTCTGTTCTTGAAGCTTCTCAGAAACTCTGTGGAATTGGGTTAAGAAGGAAAAGAATTTTGGGTTTGAAGAACATTGATGTATATGCTTTTGGTGTTTATGCTGACGATGATGACGTAAAGAGATGTCTGTCTGAGAAATATGGGAAATTTTCTCCGTCCGAATTGAAGGGAAACAAGGAGTTTAATGAGGATCTACTGGAAAATGATATACATTTAACAGTAAGGCTTCAAATTGTTTATAGTAGATTGAGCATTCGTTCTGTGAGGAGTGCATTTGAAGAGTCTGTTGGAAGCCGATTGCAAAAATACGGGGGTTCAGATAATAAAGAATTGCTTCAGAGGTTTACTTCACAGTTTAGAGATGAAATCAAAATACCTCGTGGGTCTGTAATTCATCTCACAAGAGAGAAGGGCCATGTTCTTCGCACAACAATTGACGGACAGGAAGTGGGAAGCATCCAAAGTAAACTCCTGTGTAGGTCAATCCTAGATTTATACGTTGGCGAGGAACCATTTGATAAACAAGCTAAAGAAGAAATAGAGCTCAACCTGGCTTCTTACCTCCAAAGTTAG

Protein sequence

>Msa1163130

MVSLRFPFTFSNPKPPQSSRPFSKFAAAAAATAGATAAFIAVSSNDRHRLFLQNALNSFFTSSNNSLPLWGSLSLADSGVPIVDSRTGSSFPSVLEASQKLCGIGLRRKRILGLKNIDVYAFGVYADDDDVKRCLSEKYGKFSPSELKGNKEFNEDLLENDIHLTVRLQIVYSRLSIRSVRSAFEESVGSRLQKYGGSDNKELLQRFTSQFRDEIKIPRGSVIHLTREKGHVLRTTIDGQEVGSIQSKLLCRSILDLYVGEEPFDKQAKEEIELNLASYLQS*